Citrus Sinensis ID: 016800
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | 2.2.26 [Sep-21-2011] | |||||||
| Q99J62 | 364 | Replication factor C subu | yes | no | 0.850 | 0.892 | 0.566 | 1e-107 | |
| P35249 | 363 | Replication factor C subu | yes | no | 0.897 | 0.944 | 0.553 | 1e-106 | |
| Q54MD4 | 347 | Probable replication fact | yes | no | 0.858 | 0.945 | 0.512 | 6e-99 | |
| Q09843 | 340 | Replication factor C subu | yes | no | 0.866 | 0.973 | 0.492 | 6e-91 | |
| P0C7N7 | 411 | Replication factor C subu | N/A | no | 0.848 | 0.788 | 0.472 | 3e-89 | |
| P40348 | 353 | Replication factor C subu | yes | no | 0.829 | 0.898 | 0.490 | 7e-87 | |
| O28219 | 319 | Replication factor C smal | yes | no | 0.798 | 0.956 | 0.444 | 5e-70 | |
| Q9YBS7 | 325 | Replication factor C smal | yes | no | 0.782 | 0.92 | 0.448 | 8e-67 | |
| A3DNV9 | 329 | Replication factor C smal | yes | no | 0.782 | 0.908 | 0.432 | 1e-65 | |
| Q46C63 | 334 | Replication factor C smal | yes | no | 0.790 | 0.904 | 0.407 | 6e-65 |
| >sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/332 (56%), Positives = 246/332 (74%), Gaps = 7/332 (2%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 33 KKVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTST 87
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI
Sbjct: 88 ILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKI 146
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++
Sbjct: 147 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKI 206
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VS 277
R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++
Sbjct: 207 QQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIA 266
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP ++G+F C SG FD V N+I EG+ A+ L++QL D ++E E++SD+ ++
Sbjct: 267 GVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKS 326
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 327 IITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
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The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. This subunit may be involved in the elongation of the multiprimed DNA template. Mus musculus (taxid: 10090) |
| >sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/354 (55%), Positives = 254/354 (71%), Gaps = 11/354 (3%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
LQ A RL G IT K + ++GVIP E ++G+FA C+SG FD V ++I EG+ A+
Sbjct: 245 LQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAAT 304
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L++QL DVVVE ++SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 305 QLVNQLHDVVVEN-NLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
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The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. This subunit may be involved in the elongation of the multiprimed DNA template. Homo sapiens (taxid: 9606) |
| >sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (926), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 168/328 (51%), Positives = 228/328 (69%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G +PP+++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ L C+ FD V +IIA+GYP S ++SQLFD V+ T+D++ Q++ I +
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGN 306
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCN 373
VD+ L+DG++E+LQL D++S +++ + N
Sbjct: 307 VDRNLIDGSEEFLQLFDLSSYIMKQLNN 334
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The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1. This subunit may be involved in the elongation of the multiprimed DNA template. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rfc2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 169/343 (49%), Positives = 235/343 (68%), Gaps = 12/343 (3%)
Query: 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP 90
+K+E E K+ S PWVE YRPK + V+ QE V+VL TL + N PHMLFYG
Sbjct: 9 KKTEQEAKK--------SIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGS 60
Query: 91 PGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
PGTGKT+T LA++ +LFGP+L KSRVLELNASD+RGI+++R K+K+FA V + + G
Sbjct: 61 PGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN--KVDG 118
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
YPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSIT 269
FKPL E M R+ I ++ ++++ ++ L S GD+R+AIT+LQ AA L G+ IT
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+ ++G +P ++ L + + ++ AEGY ++LSQL DV+++ E
Sbjct: 239 ISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEE 298
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372
+S + +I L+EVDK L DGADE LQLLD+ S+ I VC
Sbjct: 299 TLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSS-ISVVC 340
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The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1. Subunit 2 binds ATP and single-stranded DNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (842), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 178/377 (47%), Positives = 240/377 (63%), Gaps = 53/377 (14%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108
QPWVEKYRPK + +V Q+ +++L+ TL+++N PHMLFYGPPGTGKT+T LA+A QL+G
Sbjct: 33 QPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYG 92
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFA----AVA----VGSGQRRGG---------- 150
PEL KSRVLELNASD+RGI++VR K+K FA +VA V + + GG
Sbjct: 93 PELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDK 152
Query: 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFR
Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFR 212
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT- 269
FK L + RV I E + LDA L ++ GDLR+AIT+LQ AARL G++ T
Sbjct: 213 FKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTA 272
Query: 270 ----------------------SKDLIS------VSGVIPPEVV----EGLF--AVCRSG 295
SK IS ++GVIP + + LF + +S
Sbjct: 273 GRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSI 332
Query: 296 DFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGAD 355
++ K V N+IAEG+ AS +SQL++ V+ E + D ++ R+ +E DK LVDG D
Sbjct: 333 RYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSETDKRLVDGGD 392
Query: 356 EYLQLLDVASNVIRAVC 372
E+L +LD+ V +C
Sbjct: 393 EHLAVLDLGVRVAGVLC 409
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The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1. Subunit 2 binds ATP and single-stranded DNA. Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614) |
| >sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (822), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 159/324 (49%), Positives = 216/324 (66%), Gaps = 7/324 (2%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ QPWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L
Sbjct: 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
Query: 107 FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEA 164
+GP+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEA
Sbjct: 83 YGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEA 142
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
DSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+
Sbjct: 143 DSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLR 202
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 203 FISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 263 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 322
Query: 340 CKCLAEVDKCLVDGADEYLQLLDV 363
L D L +G +E++QLL++
Sbjct: 323 SWLLFTTDSRLNNGTNEHIQLLNL 346
|
Component of ATP-dependent clamp loader (RFC and RFC-like) complexes for DNA clamps, such as the POL30/PCNA homotrimer and the checkpoint clamp DDC1:MEC3:RAD17 complex. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighboring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA. Component of the replication factor C (RFC or activator 1) complex which loads POL30/PCNA and acts during elongation of primed DNA templates by DNA polymerase delta and epsilon. RFC has an essential but redundant activity in sister chromatid cohesion establishment. Component of the RFC-like complex CTF18-RFC which is required for efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. Component of the RFC-like RAD24-RFC complex which loads the checkpoint clamp DDC1:MEC3:RAD17 complex and is involved in DNA repair pathways. Component of the RFC-like ELG1-RFC complex which appears to have a role in DNA replication, replication fork re-start, recombination and repair. RFC2 binds ATP and single-stranded DNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rfcS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 199/317 (62%), Gaps = 12/317 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA A G P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG--------APFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
IC +EG+ + + L L IS GD R+AI LQGAA + G + + + ++ PE
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEE 230
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ L G+F A + ++ ++ E G +++QLF ++ + I D + ++ L
Sbjct: 231 MTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREII-SMPIKDSLKVQLIDKL 289
Query: 344 AEVDKCLVDGADEYLQL 360
EVD L +GA+E +QL
Sbjct: 290 GEVDFRLTEGANERIQL 306
|
Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. The complex possesses DNA-dependent ATPase activity which is further stimulated by PCNA. Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) |
| >sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rfcS PE=3 SV=3 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 190/312 (60%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
WVEKYRP+ + D+ Q+ VV L ++ N PH+LF GPPGTGKTT A A+AH LFG E
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-E 67
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGINV+R K+K FA R P P+KI++LDEAD+MT D
Sbjct: 68 NYRQYMLELNASDERGINVIREKVKEFA--------RSRTPPEIPFKIVLLDEADNMTSD 119
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME YS VTRF I NY S+II+P+ SRCA FRF+PLS++ + R+ +I E
Sbjct: 120 AQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENE 179
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
G++ + EAL + IS+GD+R+AI LQ A+ L +T + V G+ P V + A
Sbjct: 180 GVDYEEEALDAIYEISEGDMRKAINVLQAASYL--GKVTVDAVYRVVGMAKPREVREMLA 237
Query: 291 VCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
GDF A + I+ E G + Q+ + TE + +E + L EV
Sbjct: 238 TALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHY 297
Query: 349 CLVDGADEYLQL 360
LV+G+D+ +QL
Sbjct: 298 RLVEGSDDDIQL 309
|
Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) |
| >sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 191/312 (61%), Gaps = 13/312 (4%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRPK + ++ QEE+V L ++ N PH+LF GPPGTGKTT A +AH LFG E
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-E 71
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
Y+ +LELNASD+RGI+V+R+K+K FA V + P+KI++LDEAD+MT D
Sbjct: 72 NYRQYMLELNASDERGIDVIRSKVKEFARTRVAAN--------IPFKIVLLDEADNMTAD 123
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I +E
Sbjct: 124 AQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQE 183
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290
+ +D EAL + +S+GD+RRAI LQ AA L +T + V G+ P + +
Sbjct: 184 KVEIDEEALEAIHDLSEGDMRRAINILQAAAAL--GKVTVDSVYKVVGLAHPREIRQMIQ 241
Query: 291 VCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETE-DISDEQQARICKCLAEVDK 348
+ +G+F+ A +++ + I G ++ Q+ + T+ I DE + I E+
Sbjct: 242 LALAGNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQF 301
Query: 349 CLVDGADEYLQL 360
LV+GAD+ +QL
Sbjct: 302 RLVEGADDEIQL 313
|
Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) (taxid: 399550) |
| >sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 193/319 (60%), Gaps = 17/319 (5%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W+EKYRP ++ VA QEE + L + + T N PH+LF GPPG GKT +A++IA ++FG +
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
L++ ELNASD+RGI+VVRTKIK FA A G +KII LDEAD++T D
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMGG--------AEFKIIFLDEADALTSD 122
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
AQ+ALRRTME +S RF CNY SRIIEP+ SRCA FRF+ LS+E + R+ +I ++
Sbjct: 123 AQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQ 182
Query: 231 GLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLF 289
L++ + L +SQGD+R+A+ LQ AA + SI+ + + PE + L
Sbjct: 183 VLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLI 242
Query: 290 AVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETED-------ISDEQQARICK 341
G+F +A KE+N ++ EG ++ Q++ + E ++ +S+++ +
Sbjct: 243 ETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVD 302
Query: 342 CLAEVDKCLVDGADEYLQL 360
+ E+D L +GA E +QL
Sbjct: 303 IIGEIDFRLTEGATEKIQL 321
|
Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. Methanosarcina barkeri (strain Fusaro / DSM 804) (taxid: 269797) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| 255558610 | 342 | replication factor C / DNA polymerase II | 0.892 | 0.997 | 0.885 | 0.0 | |
| 225459625 | 341 | PREDICTED: replication factor C subunit | 0.890 | 0.997 | 0.894 | 1e-180 | |
| 147858312 | 341 | hypothetical protein VITISV_019805 [Viti | 0.890 | 0.997 | 0.891 | 1e-180 | |
| 224084964 | 342 | predicted protein [Populus trichocarpa] | 0.892 | 0.997 | 0.868 | 1e-179 | |
| 359492415 | 334 | PREDICTED: replication factor C subunit | 0.871 | 0.997 | 0.873 | 1e-173 | |
| 357463531 | 339 | Replication factor C subunit [Medicago t | 0.884 | 0.997 | 0.843 | 1e-171 | |
| 388505532 | 342 | unknown [Lotus japonicus] | 0.892 | 0.997 | 0.835 | 1e-171 | |
| 225459627 | 329 | PREDICTED: replication factor C subunit | 0.858 | 0.996 | 0.862 | 1e-171 | |
| 356509379 | 342 | PREDICTED: replication factor C subunit | 0.895 | 1.0 | 0.833 | 1e-171 | |
| 18395021 | 339 | replication factor C subunit 2/4 [Arabid | 0.884 | 0.997 | 0.843 | 1e-169 |
| >gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/341 (88%), Positives = 321/341 (94%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET+NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFF+CNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SRVLHIC EEGLNLDAEALSTLS +SQGDLRRAITYLQGAARL+GS+I+SKDLISVSGVI
Sbjct: 181 SRVLHICREEGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGSTISSKDLISVSGVI 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P E V L+A CRSGDFD+ANKEVNNIIAEGYP S +L QL +VVVE +DISDEQ+A+IC
Sbjct: 241 PQEAVGALYAACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQIC 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K L DKCLVDGADEYLQLLDVASN +RA+CNMP+EF Y+
Sbjct: 301 KSLGAADKCLVDGADEYLQLLDVASNTMRALCNMPQEFPYE 341
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis vinifera] gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 305/341 (89%), Positives = 321/341 (94%), Gaps = 1/341 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L QLFDVVVE DISDEQ+ARIC
Sbjct: 241 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LAE DKCLVDGADEYLQLLDVASN +RA+CNMPEEF ++
Sbjct: 300 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 340
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust.
Identities = 304/341 (89%), Positives = 320/341 (93%), Gaps = 1/341 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FA VAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L QLFDVVVE DISDEQ+ARIC
Sbjct: 241 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 299
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LAE DKCLVDGADEYLQLLDVASN +RA+CNMPEEF ++
Sbjct: 300 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 340
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa] gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/341 (86%), Positives = 321/341 (94%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQSSQ WVEKYRPKQ+KDVAHQ+EVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPLLQSSQQWVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQL+GPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSGQR+G YPCPPYKIII
Sbjct: 61 AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL EE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL LD EALSTLSS+SQGDLRRAITYLQGAARLFGSSI+SKDLISVSG I
Sbjct: 181 NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSGAI 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P EV E ++A C++GDFDLANKEVN++IAEGYP S +L+QLF+VVVE +DISDEQ+ARIC
Sbjct: 241 PREVTEAIYAACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARIC 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LA DKCLVDGADEYLQLLDV SN +R++CNMP+EF YD
Sbjct: 301 KSLATADKCLVDGADEYLQLLDVVSNTMRSLCNMPQEFSYD 341
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 298/341 (87%), Positives = 314/341 (92%), Gaps = 8/341 (2%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET NCPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFG VLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 61 AIAHQLFG-------VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 113
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 114 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 173
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 174 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 233
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L QLFDVVVE DISDEQ+ARIC
Sbjct: 234 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 292
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LAE DKCLVDGADEYLQLLDVASN +RA+CNMPEEF ++
Sbjct: 293 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 333
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula] gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula] gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula] gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula] gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula] gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/338 (84%), Positives = 311/338 (92%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QS+QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ + + GYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL+EE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+++IC EEG+ LDAE LSTLS+ISQGDLRRAITYLQ AARLFGSSI+SKDLISVSG++
Sbjct: 181 SRIVYICKEEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P EVVE L CRSG+FDLANKEVNN IAEGYP S +L+QLF+ +VE DISDEQ+ARI
Sbjct: 241 PAEVVEALLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARIS 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
K L E DKCLVDGADEYLQLLDV SN I+A+CNMPE F
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVVSNTIQALCNMPEGF 338
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/341 (83%), Positives = 312/341 (91%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP++QSSQPWVEKYRPKQVKDVA+Q+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPIVQSSQPWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ ++GGYPCPPYKII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNPKKGGYPCPPYKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+ICNEEGL+LDAE LSTLSSISQGDLRRAITYLQ +ARLFGS I+SKDLISVSGV+
Sbjct: 181 SRILYICNEEGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSHISSKDLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VVE + C+SG+FDLANKEVNN IAEGYPAS LL+QLFD +VE + SD+Q+ARIC
Sbjct: 241 PENVVEAILKACKSGNFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKARIC 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K L E DKCLVDGADEYLQLLDV SN +A C+MPE Y+
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVISNTTKAFCDMPEGLSYE 341
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/341 (86%), Positives = 310/341 (90%), Gaps = 13/341 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQ+EV CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQDEV------------CPHMLFYGPPGTGKTTTAL 48
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGSG R+GGYPCPPYKIII
Sbjct: 49 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIII 108
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 109 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMS 168
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+LHIC EE LNLD+EALSTLSSISQGDLRRAITYLQGAARLFGS I+SKDLISVSGV+
Sbjct: 169 SRILHICKEEELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVV 228
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P VV+ LFA C+SGDFD ANKEVNN+IAEGYP S +L QLFDVVVE DISDEQ+ARIC
Sbjct: 229 PQHVVQALFAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARIC 287
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYD 381
K LAE DKCLVDGADEYLQLLDVASN +RA+CNMPEEF ++
Sbjct: 288 KRLAEADKCLVDGADEYLQLLDVASNAMRALCNMPEEFPHE 328
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 285/342 (83%), Positives = 312/342 (91%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAP+LQS+QPWVEKYRPKQVKDVAHQ+EVVRVLTNTLET +CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPILQSTQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVG+ QR+ GYPCPP+KII+
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKSGYPCPPFKIIV 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNY+SRIIEPLASRCAKFRFKPLSEE+MS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
SR+L+I EEGL LDAEALSTLSSIS GDLRRAITYLQ AARLFGSSI+S++LISVSGV+
Sbjct: 181 SRILYISQEEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +VVE L C+SG+FDLANKEVNN IAEGYPAS +L+QLF+ +VE D+SDEQ+ARI
Sbjct: 241 PAKVVEELLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARIS 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEFQYDC 382
K L E DKCLVDGADEYLQLLDV SN ++A NMPE F Y C
Sbjct: 301 KKLGEADKCLVDGADEYLQLLDVVSNTMKAFSNMPETFAYKC 342
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana] gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana] gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana] gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana] gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana] gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/339 (84%), Positives = 313/339 (92%), Gaps = 1/339 (0%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL+TA+CPHMLFYGPPGTGKTTTAL
Sbjct: 1 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTAL 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK FAAVAVGS R+ GYPCP +KIII
Sbjct: 61 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIII 120
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS
Sbjct: 121 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 180
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
+R+LHICNEEGL+LD EALSTLSSISQGDLRRAITYLQ A RLFGS+ITS DL++VSGV+
Sbjct: 181 NRILHICNEEGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVV 240
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE-DISDEQQARI 339
P EVV LF C+SGDFD+ANKEV+NI+AEGYPAS +++QLFD+V E + DI+D Q+A+I
Sbjct: 241 PLEVVNKLFTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKI 300
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378
CKCLAE DK LVDGADEYLQLLDVAS+ I A+ M ++F
Sbjct: 301 CKCLAETDKRLVDGADEYLQLLDVASSTICALSEMAQDF 339
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| UNIPROTKB|F1NEW1 | 362 | RFC4 "Uncharacterized protein" | 0.850 | 0.897 | 0.575 | 1.2e-97 | |
| UNIPROTKB|F1NIY0 | 359 | RFC4 "Uncharacterized protein" | 0.850 | 0.905 | 0.575 | 1.2e-97 | |
| UNIPROTKB|P35249 | 363 | RFC4 "Replication factor C sub | 0.897 | 0.944 | 0.553 | 1.8e-96 | |
| MGI|MGI:2146571 | 364 | Rfc4 "replication factor C (ac | 0.863 | 0.906 | 0.565 | 1.8e-96 | |
| RGD|1310142 | 364 | Rfc4 "replication factor C (ac | 0.876 | 0.920 | 0.565 | 1.8e-96 | |
| UNIPROTKB|E2R2M6 | 363 | RFC4 "Uncharacterized protein" | 0.835 | 0.878 | 0.582 | 2.2e-96 | |
| UNIPROTKB|F1SFI3 | 366 | RFC4 "Uncharacterized protein" | 0.837 | 0.874 | 0.568 | 4.2e-95 | |
| ZFIN|ZDB-GENE-040824-3 | 358 | rfc4 "replication factor C (ac | 0.905 | 0.966 | 0.541 | 4.2e-95 | |
| DICTYBASE|DDB_G0286027 | 347 | rfc4 "replication factor C sub | 0.858 | 0.945 | 0.512 | 2e-88 | |
| UNIPROTKB|Q29RS9 | 337 | RFC4 "Uncharacterized protein" | 0.596 | 0.676 | 0.617 | 5.6e-88 |
| UNIPROTKB|F1NEW1 RFC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 191/332 (57%), Positives = 244/332 (73%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTA-SGSRADGKVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L + +E + + +EA+S L +S GDLR+AITYLQ A RL G IT K + ++
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++GL + C SG F+ N+I EGY + L++QL D+VVE+ED SD+Q++
Sbjct: 265 GVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKS 324
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADEYLQL+ + + V++
Sbjct: 325 IIVEKLAEVDKCLADGADEYLQLISLCALVMQ 356
|
|
| UNIPROTKB|F1NIY0 RFC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 191/332 (57%), Positives = 244/332 (73%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPGTGKT+T
Sbjct: 31 KKLKPV-----PWVEKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNLLFYGPPGTGKTST 85
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
LA A +LFGPEL++ RVLELNASD+RGI V+R K+K FA + SG R G CPP+KI
Sbjct: 86 ILAAARELFGPELFRQRVLELNASDERGIQVIREKVKAFAQLTA-SGSRADGKVCPPFKI 144
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+ILDEADSMT AQ ALRRTME SK TRF ICNYISRIIEPL SRC+KFRFKPLS+++
Sbjct: 145 VILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKI 204
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVS 277
R+L + +E + + +EA+S L +S GDLR+AITYLQ A RL G IT K + ++
Sbjct: 205 QQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIA 264
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
GVIP E ++GL + C SG F+ N+I EGY + L++QL D+VVE+ED SD+Q++
Sbjct: 265 GVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKS 324
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
I + LAEVDKCL DGADEYLQL+ + + V++
Sbjct: 325 IIVEKLAEVDKCLADGADEYLQLISLCALVMQ 356
|
|
| UNIPROTKB|P35249 RFC4 "Replication factor C subunit 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 196/354 (55%), Positives = 254/354 (71%)
Query: 17 PNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT 76
P T+ S+ E+ +K PV PWVEKYRPK V +VA QEEVV VL +
Sbjct: 14 PPLTKDRGVAASAGSSGEN---KKAKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKS 65
Query: 77 LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136
LE A+ P++LFYGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K
Sbjct: 66 LEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKN 125
Query: 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196
FA + V SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+S
Sbjct: 126 FAQLTV-SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Query: 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
RIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+
Sbjct: 185 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITF 244
Query: 257 LQGAARLFGSS-ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
LQ A RL G IT K + ++GVIP E ++G+FA C+SG FD V ++I EG+ A+
Sbjct: 245 LQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAAT 304
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L++QL DVVVE ++SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 305 QLVNQLHDVVVEN-NLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
|
|
| MGI|MGI:2146571 Rfc4 "replication factor C (activator 1) 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 191/338 (56%), Positives = 248/338 (73%)
Query: 33 SEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPG 92
S E K K+ PV PWVEKYRPK V +VA Q+EVV VL +LE A+ P++LFYGPPG
Sbjct: 28 SSGETK-KVKPV-----PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPG 81
Query: 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152
TGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R G P
Sbjct: 82 TGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKP 140
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
CPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFK
Sbjct: 141 CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK 200
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
PLS+++ R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D
Sbjct: 201 PLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSED 260
Query: 273 LIS-VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDI 331
+I+ ++GVIP ++G+F C SG FD V N+I EG+ A+ L++QL D ++E E++
Sbjct: 261 VITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENL 320
Query: 332 SDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
SD+ ++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 321 SDKHKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
|
|
| RGD|1310142 Rfc4 "replication factor C (activator 1) 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 194/343 (56%), Positives = 250/343 (72%)
Query: 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLF 87
SS S E K K+ PV PWVEKYRPK V +VA QEEVV VL +LE A+ P++LF
Sbjct: 23 SSSAGSSGETK-KVKPV-----PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLF 76
Query: 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
YGPPGTGKT+T LA A +LFGPEL++ RVLELNASD+RGI VVR K+K FA + V SG R
Sbjct: 77 YGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSR 135
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+
Sbjct: 136 SDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCS 195
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
KFRFKPLS+++ R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G
Sbjct: 196 KFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGK 255
Query: 268 ITSKDLIS-VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVV 326
S+D+I+ ++GVIP +EG+ C SG FD + N+I EG+ A+ L++QL D ++
Sbjct: 256 EISEDVITDIAGVIPAATIEGIVTACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSII 315
Query: 327 ETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
E E++SD+Q++ I + LAEVDKCL DGADE+LQL+ + + V++
Sbjct: 316 EDENLSDKQKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
|
|
| UNIPROTKB|E2R2M6 RFC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 187/321 (58%), Positives = 242/321 (75%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 38 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 97
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 98 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 156
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I ++
Sbjct: 157 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADK 216
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEGL 288
E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++GVIP ++G+
Sbjct: 217 EHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGI 276
Query: 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
FA C+SG FD V ++I EG+ A+ L+SQ DVVVE +++SD+Q++ I + LAE DK
Sbjct: 277 FAACQSGSFDKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQKSIITEKLAEADK 336
Query: 349 CLVDGADEYLQLLDVASNVIR 369
CL DGADE+LQL+ + + V++
Sbjct: 337 CLADGADEHLQLISLCATVMQ 357
|
|
| UNIPROTKB|F1SFI3 RFC4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 183/322 (56%), Positives = 241/322 (74%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-GSGQRRGGYPCPPYKIIILDEADSMT 168
EL++ RVLELNASD+RGI VVR K+K FA + V GS G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKPCPPFKIVILDEADSMT 158
Query: 169 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +
Sbjct: 159 SAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAD 218
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSGVIPPEVVEG 287
+E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++GV+P E ++G
Sbjct: 219 KEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDG 278
Query: 288 LFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVD 347
+ A C+SG FD V ++I EG+ A+ ++QL DVVVE +++SD+Q++ I + LAE D
Sbjct: 279 VLAACQSGSFDKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEAD 338
Query: 348 KCLVDGADEYLQLLDVASNVIR 369
KCL DGADE+LQL+ + + V++
Sbjct: 339 KCLADGADEHLQLISLCATVMQ 360
|
|
| ZFIN|ZDB-GENE-040824-3 rfc4 "replication factor C (activator 1) 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 189/349 (54%), Positives = 247/349 (70%)
Query: 22 KFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN 81
K S++QS + Q + PWVEKYRPK V +VA QEEVV VL +LE A+
Sbjct: 6 KGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD 65
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141
P++LFYGPPGTGKT+T LA A +L+GP+LY+ RVLELNASD+RGI VVR K+K FA +
Sbjct: 66 LPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLT 125
Query: 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201
V +G R G CPP+KIIILDEADSMT AQ ALRRTME S+ TRF ICNY+SRIIEP
Sbjct: 126 V-AGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEP 184
Query: 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
L SRC+KFRFKPL+ +V R+L IC +E L E + L +S+GDLR+AIT+LQ A
Sbjct: 185 LTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGA 244
Query: 262 RLFGS-SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQ 320
RL IT + +I ++GV+PP+V++ L +C G F+ V ++I +GY A+ LL+Q
Sbjct: 245 RLNSEREITEQTIIEIAGVVPPKVIQSLLHICYKGTFEKLEVAVKDMIDQGYAATNLLNQ 304
Query: 321 LFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L DV++E E +SD+Q++ I + +AEVDKCL DGADEYLQLL + S +++
Sbjct: 305 LHDVIIE-EQLSDKQKSVITEKMAEVDKCLADGADEYLQLLSLCSVIMQ 352
|
|
| DICTYBASE|DDB_G0286027 rfc4 "replication factor C subunit 4" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 168/328 (51%), Positives = 228/328 (69%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ ++PWV KYRPK V DV++QE+V+ L +L T N PH+LFYGPPGTGKT+T LAIA
Sbjct: 7 KDTEPWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMD 66
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++GPEL K RVLELNASD+RGI VVRTKIK FA AV P +K+IILDEAD
Sbjct: 67 IYGPELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEAD 126
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
SMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+
Sbjct: 127 SMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKF 186
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G +PP+++
Sbjct: 187 ISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLI 246
Query: 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAE 345
+ L C+ FD V +IIA+GYP S ++SQLFD V+ T+D++ Q++ I +
Sbjct: 247 KQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGN 306
Query: 346 VDKCLVDGADEYLQLLDVASNVIRAVCN 373
VD+ L+DG++E+LQL D++S +++ + N
Sbjct: 307 VDRNLIDGSEEFLQLFDLSSYIMKQLNN 334
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| UNIPROTKB|Q29RS9 RFC4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
Identities = 142/230 (61%), Positives = 176/230 (76%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK V +VA QEEVV VL +LE A+ P++LFYGPPGTGKT+T LA A +LFGP
Sbjct: 39 PWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGP 98
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
EL++ RVLELNASD+RGI VVR K+K FA + V SG R G PCPP+KI+ILDEADSMT
Sbjct: 99 ELFRLRVLELNASDERGIQVVREKVKNFAQLTV-SGSRSDGKPCPPFKIVILDEADSMTS 157
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I ++
Sbjct: 158 AAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADK 217
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS-ITSKDLISVSG 278
E + + E ++ L +S+GDLR+AIT+LQ A RL G +T K + ++G
Sbjct: 218 EHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAG 267
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q09843 | RFC2_SCHPO | No assigned EC number | 0.4927 | 0.8664 | 0.9735 | yes | no |
| P40348 | RFC2_YEAST | No assigned EC number | 0.4907 | 0.8298 | 0.8980 | yes | no |
| P53016 | RFC4_CAEEL | No assigned EC number | 0.4084 | 0.8193 | 0.9371 | yes | no |
| A2SQT3 | RFCS_METLZ | No assigned EC number | 0.3799 | 0.8272 | 0.9844 | yes | no |
| P35249 | RFC4_HUMAN | No assigned EC number | 0.5536 | 0.8979 | 0.9449 | yes | no |
| Q99J62 | RFC4_MOUSE | No assigned EC number | 0.5662 | 0.8507 | 0.8928 | yes | no |
| Q54MD4 | RFC4_DICDI | No assigned EC number | 0.5121 | 0.8586 | 0.9452 | yes | no |
| A1RWU7 | RFCS_THEPD | No assigned EC number | 0.3938 | 0.8115 | 0.9538 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00015431001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (341 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00024178001 | RecName- Full=Proliferating cell nuclear antigen;; This protein is an auxiliary protein of DNA [...] (266 aa) | • | • | • | • | • | 0.975 | |||
 | GSVIVG00027060001 | SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (354 aa) | • | • | • | • | • | • | 0.905 | ||
 | GSVIVG00006013001 | RecName- Full=DNA polymerase; EC=2.7.7.7; (1126 aa) | • | • | • | • | 0.879 | ||||
 | GSVIVG00022496001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (330 aa) | • | • | 0.852 | ||||||
 | GSVIVG00022150001 | RecName- Full=DNA ligase; EC=6.5.1.1; (783 aa) | • | • | • | 0.826 | |||||
 | GSVIVG00001122001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (326 aa) | • | • | • | • | • | • | 0.818 | ||
 | GSVIVG00015413001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (360 aa) | • | • | • | • | • | • | 0.811 | ||
 | GSVIVG00002439001 | RecName- Full=DNA primase; EC=2.7.7.-; (457 aa) | • | • | • | 0.766 | |||||
 | GSVIVG00017275001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (854 aa) | • | • | • | • | 0.741 | ||||
 | GSVIVG00022048001 | RecName- Full=DNA polymerase; EC=2.7.7.7; (2224 aa) | • | • | • | • | 0.724 | ||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 382 | |||
| PRK00440 | 319 | PRK00440, rfc, replication factor C small subunit; | 1e-116 | |
| PLN03025 | 319 | PLN03025, PLN03025, replication factor C subunit; | 7e-82 | |
| PRK12402 | 337 | PRK12402, PRK12402, replication factor C small sub | 2e-71 | |
| PRK04132 | 846 | PRK04132, PRK04132, replication factor C small sub | 7e-61 | |
| PHA02544 | 316 | PHA02544, 44, clamp loader, small subunit; Provisi | 5e-38 | |
| TIGR02397 | 355 | TIGR02397, dnaX_nterm, DNA polymerase III, subunit | 7e-36 | |
| PRK14953 | 486 | PRK14953, PRK14953, DNA polymerase III subunits ga | 2e-35 | |
| PRK14962 | 472 | PRK14962, PRK14962, DNA polymerase III subunits ga | 2e-34 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 3e-33 | |
| COG2812 | 515 | COG2812, DnaX, DNA polymerase III, gamma/tau subun | 5e-32 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 2e-26 | |
| PRK07133 | 725 | PRK07133, PRK07133, DNA polymerase III subunits ga | 8e-26 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 1e-25 | |
| PRK06305 | 451 | PRK06305, PRK06305, DNA polymerase III subunits ga | 3e-24 | |
| PRK14963 | 504 | PRK14963, PRK14963, DNA polymerase III subunits ga | 5e-23 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 2e-22 | |
| TIGR00678 | 188 | TIGR00678, holB, DNA polymerase III, delta' subuni | 4e-20 | |
| pfam08542 | 89 | pfam08542, Rep_fac_C, Replication factor C C-termi | 7e-20 | |
| PRK14956 | 484 | PRK14956, PRK14956, DNA polymerase III subunits ga | 2e-19 | |
| PRK05563 | 559 | PRK05563, PRK05563, DNA polymerase III subunits ga | 4e-19 | |
| PRK14961 | 363 | PRK14961, PRK14961, DNA polymerase III subunits ga | 1e-18 | |
| pfam13177 | 161 | pfam13177, DNA_pol3_delta2, DNA polymerase III, de | 2e-18 | |
| PRK05896 | 605 | PRK05896, PRK05896, DNA polymerase III subunits ga | 5e-18 | |
| PRK14965 | 576 | PRK14965, PRK14965, DNA polymerase III subunits ga | 6e-18 | |
| PRK14970 | 367 | PRK14970, PRK14970, DNA polymerase III subunits ga | 6e-18 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 8e-18 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 3e-17 | |
| PRK08451 | 535 | PRK08451, PRK08451, DNA polymerase III subunits ga | 5e-17 | |
| PRK06647 | 563 | PRK06647, PRK06647, DNA polymerase III subunits ga | 8e-17 | |
| PRK14969 | 527 | PRK14969, PRK14969, DNA polymerase III subunits ga | 1e-16 | |
| PRK14955 | 397 | PRK14955, PRK14955, DNA polymerase III subunits ga | 3e-16 | |
| PRK06645 | 507 | PRK06645, PRK06645, DNA polymerase III subunits ga | 5e-16 | |
| PRK14964 | 491 | PRK14964, PRK14964, DNA polymerase III subunits ga | 8e-16 | |
| PRK08691 | 709 | PRK08691, PRK08691, DNA polymerase III subunits ga | 1e-15 | |
| PRK14954 | 620 | PRK14954, PRK14954, DNA polymerase III subunits ga | 2e-15 | |
| PRK14959 | 624 | PRK14959, PRK14959, DNA polymerase III subunits ga | 5e-15 | |
| PRK14960 | 702 | PRK14960, PRK14960, DNA polymerase III subunits ga | 2e-13 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-13 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 4e-13 | |
| PRK14957 | 546 | PRK14957, PRK14957, DNA polymerase III subunits ga | 6e-13 | |
| COG0470 | 230 | COG0470, HolB, ATPase involved in DNA replication | 7e-13 | |
| PRK04132 | 846 | PRK04132, PRK04132, replication factor C small sub | 1e-12 | |
| PRK09112 | 351 | PRK09112, PRK09112, DNA polymerase III subunit del | 2e-12 | |
| PRK07399 | 314 | PRK07399, PRK07399, DNA polymerase III subunit del | 3e-12 | |
| PRK14952 | 584 | PRK14952, PRK14952, DNA polymerase III subunits ga | 5e-12 | |
| PRK05564 | 313 | PRK05564, PRK05564, DNA polymerase III subunit del | 6e-12 | |
| PRK09111 | 598 | PRK09111, PRK09111, DNA polymerase III subunits ga | 1e-11 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 4e-11 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 8e-11 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 6e-10 | |
| PRK14958 | 509 | PRK14958, PRK14958, DNA polymerase III subunits ga | 6e-10 | |
| PRK13341 | 725 | PRK13341, PRK13341, recombination factor protein R | 6e-10 | |
| PRK07471 | 365 | PRK07471, PRK07471, DNA polymerase III subunit del | 7e-10 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 9e-10 | |
| TIGR02902 | 531 | TIGR02902, spore_lonB, ATP-dependent protease LonB | 2e-09 | |
| TIGR00602 | 637 | TIGR00602, rad24, checkpoint protein rad24 | 3e-08 | |
| pfam03215 | 490 | pfam03215, Rad17, Rad17 cell cycle checkpoint prot | 3e-08 | |
| COG1474 | 366 | COG1474, CDC6, Cdc6-related protein, AAA superfami | 4e-08 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 2e-07 | |
| pfam13401 | 124 | pfam13401, AAA_22, AAA domain | 3e-07 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 4e-07 | |
| PRK08058 | 329 | PRK08058, PRK08058, DNA polymerase III subunit del | 5e-07 | |
| PRK06090 | 319 | PRK06090, PRK06090, DNA polymerase III subunit del | 1e-06 | |
| pfam05496 | 231 | pfam05496, RuvB_N, Holliday junction DNA helicase | 1e-06 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 2e-06 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 4e-05 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 1e-04 | |
| pfam13086 | 220 | pfam13086, AAA_11, AAA domain | 2e-04 | |
| TIGR02903 | 615 | TIGR02903, spore_lon_C, ATP-dependent protease, Lo | 2e-04 | |
| PRK05707 | 328 | PRK05707, PRK05707, DNA polymerase III subunit del | 3e-04 | |
| PRK06964 | 342 | PRK06964, PRK06964, DNA polymerase III subunit del | 3e-04 | |
| pfam09848 | 348 | pfam09848, DUF2075, Uncharacterized conserved prot | 3e-04 | |
| PRK07993 | 334 | PRK07993, PRK07993, DNA polymerase III subunit del | 3e-04 | |
| PRK08699 | 325 | PRK08699, PRK08699, DNA polymerase III subunit del | 3e-04 | |
| TIGR03345 | 852 | TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp | 8e-04 | |
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 8e-04 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 0.001 | |
| PRK07940 | 394 | PRK07940, PRK07940, DNA polymerase III subunit del | 0.002 | |
| COG1466 | 334 | COG1466, HolA, DNA polymerase III, delta subunit [ | 0.002 | |
| TIGR02881 | 261 | TIGR02881, spore_V_K, stage V sporulation protein | 0.002 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 0.002 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 0.003 | |
| CHL00181 | 287 | CHL00181, cbbX, CbbX; Provisional | 0.003 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 0.003 | |
| PRK07132 | 299 | PRK07132, PRK07132, DNA polymerase III subunit del | 0.004 | |
| pfam01078 | 207 | pfam01078, Mg_chelatase, Magnesium chelatase, subu | 0.004 | |
| pfam13173 | 127 | pfam13173, AAA_14, AAA domain | 0.004 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 0.004 |
| >gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-116
Identities = 132/312 (42%), Positives = 197/312 (63%), Gaps = 12/312 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
WVEKYRP+ + ++ QEE+V L + ++ N PH+LF GPPGTGKTT ALA+A +L+G
Sbjct: 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG- 64
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
E ++ LELNASD+RGI+V+R KIK FA A GG P +KII LDEAD++T
Sbjct: 65 EDWRENFLELNASDERGIDVIRNKIKEFARTAPV-----GGAP---FKIIFLDEADNLTS 116
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
DAQ ALRRTME YS+ TRF CNY S+II+P+ SRCA FRF PL +E ++ R+ +I
Sbjct: 117 DAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN 176
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
EG+ + +AL + +S+GD+R+AI LQ AA G +T + + ++G PE + +
Sbjct: 177 EGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEEAVYKITGTARPEEIREMI 235
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASL-LLSQLFDVVVETEDISDEQQARICKCLAEVDK 348
+ +GDF A +++ +++ + + ++ Q+ V DI +E + + + E D
Sbjct: 236 ELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWS-LDIPEELKVELIDAIGEADF 294
Query: 349 CLVDGADEYLQL 360
+ +GA+E +QL
Sbjct: 295 RITEGANERIQL 306
|
Length = 319 |
| >gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (646), Expect = 7e-82
Identities = 120/276 (43%), Positives = 161/276 (58%), Gaps = 9/276 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP ++ D+ E+ V L N P+++ GPPGTGKTT+ LA+AH+L GP
Sbjct: 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
YK VLELNASDDRGI+VVR KIK FA Q++ P +KI+ILDEADSMT
Sbjct: 62 -NYKEAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKIVILDEADSMTS 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF CN S+IIEP+ SRCA RF LS++ + R++ +
Sbjct: 114 GAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA 173
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289
E + E L + + GD+R+A+ LQ FG + +++ V P V+ +
Sbjct: 174 EKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFG-FVNQENVFKVCDQPHPLHVKNIV 232
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV 325
C G FD A + + GY + +++ LF VV
Sbjct: 233 RNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVV 268
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Length = 319 |
| >gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 2e-71
Identities = 108/331 (32%), Positives = 167/331 (50%), Gaps = 27/331 (8%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
W EKYRP ++D+ Q+EVV L+ +++ N PH+L GPPG+GKT A+A +L+G +
Sbjct: 5 WTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-D 63
Query: 111 LYKSRVLELNASD--DRGINVVRTKIKTFAAVAVGSGQRR--------------GGYPCP 154
+++ E N +D D+G + FA + R Y P
Sbjct: 64 PWENNFTEFNVADFFDQGKKYLVED-PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYR-P 121
Query: 155 ---PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
YK I+LD A+++ EDAQ ALRR ME YS+ RF S++I P+ SRC F
Sbjct: 122 LSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFF 181
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271
+ +++ + + I EG++ D + L ++ + GDLR+AI LQ AA L IT +
Sbjct: 182 RAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA-LAAGEITME 240
Query: 272 DLISVSGVIP-PEVVEGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE 329
G + EV+E L +GDF A K +++ +I EG +L +L V
Sbjct: 241 AAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRY 300
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQL 360
+ AR+ + A+ D L DGA++ +QL
Sbjct: 301 --RGDNLARLHRLAADADARLTDGANDRIQL 329
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Length = 337 |
| >gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (535), Expect = 7e-61
Identities = 110/266 (41%), Positives = 158/266 (59%), Gaps = 12/266 (4%)
Query: 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155
TT ALA+A +LFG E ++ LELNASD+RGINV+R K+K FA G
Sbjct: 580 TTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGA--------S 630
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+KII LDEAD++T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL
Sbjct: 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 690
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275
+E ++ R+ +I EGL L E L + I++GD+RRAI LQ AA L IT +++
Sbjct: 691 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DDKITDENVFL 749
Query: 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDE 334
V+ PE + + + G+F A +++ I+ + G +L Q+ V I +
Sbjct: 750 VASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNL-PIDEP 808
Query: 335 QQARICKCLAEVDKCLVDGADEYLQL 360
++ + + E + LV+GA+E +QL
Sbjct: 809 KKVELADKIGEYNFRLVEGANEMIQL 834
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Length = 846 |
| >gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 5e-38
Identities = 87/283 (30%), Positives = 126/283 (44%), Gaps = 36/283 (12%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP-PGTGKTTTALAIAHQLFGP 109
W +KYRP + + + ++ P+ML + P PGTGKTT A A+ +++
Sbjct: 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV--- 67
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAA-VAVGSGQRRGGYPCPPYKIIILDEAD-SM 167
+ VL +N SD R I+ VR ++ FA+ V++ K+II+DE D
Sbjct: 68 ---GAEVLFVNGSDCR-IDFVRNRLTRFASTVSL----------TGGGKVIIIDEFDRLG 113
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF-KPLSEE---VMSS-- 221
DAQ LR ME YSK F N + IIEPL SRC F P EE +M
Sbjct: 114 LADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMI 173
Query: 222 -RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R I EG+ +D + L+ L + D RR I LQ A I + L V+
Sbjct: 174 VRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS--TGKIDAGILSEVTNSD 231
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
+VVE L ++ DF N + + + +L+D
Sbjct: 232 IDDVVEAL----KAKDFKAVRALAPNYANDY---ASFVGKLYD 267
|
Length = 316 |
| >gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 7e-36
Identities = 77/291 (26%), Positives = 131/291 (45%), Gaps = 33/291 (11%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY 112
KYRP+ +DV QE +V+ L N ++ H LF GP GTGKT+ A A L
Sbjct: 7 KYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGP 66
Query: 113 KSR------------------VLELNASDDRGINVVRTKIKT--FAAVAVGSGQRRGGYP 152
V+E++A+ + G++ +R + +A SG+
Sbjct: 67 DGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPS---SGK------ 117
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
YK+ I+DE +++ A NAL +T+E + F +I + SRC +F FK
Sbjct: 118 ---YKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFK 174
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
+ E + R+ I ++EG+ ++ EAL ++ + G LR A++ L +IT +D
Sbjct: 175 RIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYED 234
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
+ + G++ E + L + D A K ++ I+ G L L +
Sbjct: 235 VNELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIE 285
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355 |
| >gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 86/301 (28%), Positives = 137/301 (45%), Gaps = 41/301 (13%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTA--------- 99
P+ KYRPK K+V QE VVR+L N ++ H +F GP GTGKTT A
Sbjct: 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64
Query: 100 ---------------LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
+ I F P+L E++A+ +RGI+ +R ++ +
Sbjct: 65 LNPQEGEPCGKCENCVEIDKGSF-PDLI-----EIDAASNRGIDDIRA-LRDAVSYTPIK 117
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
G+ YK+ I+DEA +T++A NAL +T+E T F +I + S
Sbjct: 118 GK---------YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILS 168
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC +F F ++E + + ICNEE + + +AL L+ S+G +R A + L A+
Sbjct: 169 RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG 228
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDV 324
+T K + G++ E V + D D A K + + +GY + QL +
Sbjct: 229 EGKVTIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEE 288
Query: 325 V 325
+
Sbjct: 289 I 289
|
Length = 486 |
| >gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 86/293 (29%), Positives = 141/293 (48%), Gaps = 29/293 (9%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL------ 106
KYRPK +V Q+ V +++ N L+ + H +F GP GTGKTT A +A L
Sbjct: 7 KYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRK 66
Query: 107 FGPELYKSR------------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
+ R V+EL+A+ +RGI+ +R KI+ AVG G Y
Sbjct: 67 GVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIR-KIRD----AVGYRPMEGKY--- 118
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
K+ I+DE +T++A NAL +T+E F + ++ + SRC F+ +
Sbjct: 119 --KVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNI 176
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
S+E++ R+ + EG+ +D EALS ++ + G LR A+T L+ + IT + +
Sbjct: 177 SDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVH 236
Query: 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327
G+IP EVV +GD ++++ G +L+ Q + +VE
Sbjct: 237 EALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVE 289
|
Length = 472 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-33
Identities = 77/240 (32%), Positives = 105/240 (43%), Gaps = 31/240 (12%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET--ANCPH--MLFYGPPGTGKTTTALAIAHQ 105
PWVEKYRPK + DV E+ L +E+ P +L YGPPG GKT+ A A+A+
Sbjct: 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
Y V+ELNASD R I+ A G G K+I+LDE D
Sbjct: 63 ------YGWEVIELNASDQRT----ADVIERVA----GEAATSGSLFGARRKLILLDEVD 108
Query: 166 SM--TEDA--QNALRRTMETYSKVTRFFFIC---NYISRIIEPLASRCAKFRFKPLSEEV 218
+ ED A+ + K + I + + L + C FK LS
Sbjct: 109 GIHGNEDRGGARAILELI----KKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRS 164
Query: 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
+ + IC +EG+ D EAL ++ S GDLR AI LQ A G + + + G
Sbjct: 165 IVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE--GYGKLTLEDVKTLG 222
|
Length = 482 |
| >gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 5e-32
Identities = 84/298 (28%), Positives = 134/298 (44%), Gaps = 33/298 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA-- 103
S Q KYRPK DV QE VV+ L+N LE H LF GP G GKTT A +A
Sbjct: 2 SYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKA 61
Query: 104 -------HQLFGPELYKSR---------VLELNASDDRGINVVRTKIKT--FAAVAVGSG 145
+ + V+E++A+ + G++ +R I+ +A
Sbjct: 62 LNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR-- 119
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205
YK+ I+DE +++ A NAL +T+E +F +I + SR
Sbjct: 120 ----------YKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR 169
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C +F FK L E ++ + I ++EG+N++ +ALS ++ ++G LR A++ L A
Sbjct: 170 CQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE 229
Query: 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323
IT + + + G+ E + L GD A + +N +I EG L L +
Sbjct: 230 GEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLN 287
|
Length = 515 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 34/237 (14%)
Query: 53 EKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
E+ RPK + +V QE ++ + L +E M+ +GPPGTGKTT A IA
Sbjct: 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT--- 60
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
+ L+A G+ +R I+ A +G+R I+ +DE +
Sbjct: 61 ---DAPFEALSAVTS-GVKDLREVIEE-ARQRRSAGRR---------TILFIDEIHRFNK 106
Query: 170 DAQNALRRTMETYSKVTRFFFIC----N-YISRIIEPLASRCAKFRFKPLSEEVMSS--- 221
Q+AL +E +T I N + L SR F KPLSEE +
Sbjct: 107 AQQDALLPHVEDG-TIT---LIGATTENPSFE-VNPALLSRAQVFELKPLSEEDIEQLLK 161
Query: 222 RVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
R L + LD EAL L+ ++ GD RRA+ L+ AA SIT + L
Sbjct: 162 RALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEEALQ 217
|
Length = 413 |
| >gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 8e-26
Identities = 84/304 (27%), Positives = 144/304 (47%), Gaps = 32/304 (10%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA------ 103
KYRPK D+ Q+ +V+ L N +++ H LF GP GTGKT+ A A
Sbjct: 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67
Query: 104 HQ--LFGP------ELYKS-RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
H+ L P + S ++E++A+ + G++ +R I+ + S
Sbjct: 68 HKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS---------- 117
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
YKI I+DE +++ A NAL +T+E K F + +I + SR +F F+ +
Sbjct: 118 KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRI 177
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
SE+ + SR+ I +E ++ + AL ++ +S G LR A++ + + + IT K++
Sbjct: 178 SEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVE 237
Query: 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE------T 328
+ G++ E + L + S D +N I +G LLL L ++V E T
Sbjct: 238 ELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKT 297
Query: 329 EDIS 332
+D S
Sbjct: 298 KDNS 301
|
Length = 725 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-25
Identities = 49/149 (32%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125
QEE + L LE ++L YGPPGTGKTT A AIA++LF P + L LNASD
Sbjct: 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLL 59
Query: 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185
VV F + + ++ +DE DS++ AQNAL R +ET + +
Sbjct: 60 EGLVVAELFGHFLVRLLFELAEKA-----KPGVLFIDEIDSLSRGAQNALLRVLETLNDL 114
Query: 186 T------RFFFICNYIS--RIIEPLASRC 206
R N + L R
Sbjct: 115 RIDRENVRVIGATNRPLLGDLDRALYDRL 143
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 76/287 (26%), Positives = 122/287 (42%), Gaps = 30/287 (10%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIA 103
+ S Q KYRP+ ++ Q+ VV VL N L H LF G GTGKTT A A
Sbjct: 1 MTSYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFA 60
Query: 104 HQLFGPELYKSR-------------------VLELNASDDRGINVVRTKIKTFAAVAVGS 144
L + + VLE++ + RGI +R +T
Sbjct: 61 KALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPS-K 119
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
+ YKI I+DE +T++A N+L +T+E + +FF I +I + S
Sbjct: 120 SR---------YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS 170
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
RC K K + EE + ++ I +EG+ EAL ++ +QG LR A + LF
Sbjct: 171 RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLF 230
Query: 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311
S+ + G++ + + L + ++ A + V + + G
Sbjct: 231 PKSLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSG 277
|
Length = 451 |
| >gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 5e-23
Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 33/289 (11%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTA--LAIAHQLFGP 109
++ RP +V QE V VL L H LF GP G GKTTTA +A+A G
Sbjct: 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE 65
Query: 110 ---------------ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
VLE++A+ + + VR ++ +A G R
Sbjct: 66 DPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVR-DLREKVLLAPLRGGR------- 117
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
K+ ILDEA M++ A NAL +T+E + F ++ + SR FRF+ L
Sbjct: 118 --KVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRL 175
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSSITSKD 272
+EE ++ ++ + EG + EAL ++ ++ G +R A + L+ RL G+ +T K
Sbjct: 176 TEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLE---RLLALGTPVTRKQ 232
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQL 321
+ G+ P E + G+ A GD A + +G+ A L+ L
Sbjct: 233 VEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGL 281
|
Length = 504 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-22
Identities = 68/235 (28%), Positives = 94/235 (40%), Gaps = 41/235 (17%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
P E+ RPK + +V QE ++ + L +E + M+ +GPPGTGKTT A IA
Sbjct: 10 FRMPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIA 69
Query: 104 HQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
+ L+A G+ +R I+ A G+R I+ LDE
Sbjct: 70 GTT------NAAFEALSAVTS-GVKDLREIIEE-ARKNRLLGRR---------TILFLDE 112
Query: 164 ADSMTEDAQNALRRTMETYSKVTRF-------FFICNYISRIIEPLASRCAKFRFKPLSE 216
+ Q+AL +E + F N L SR F KPLS
Sbjct: 113 IHRFNKAQQDALLPHVENG-TIILIGATTENPSFELN------PALLSRARVFELKPLSS 165
Query: 217 EVMSSRVLHICN--EEGL-----NLDAEALSTLSSISQGDLRRAITYLQGAARLF 264
E + + E GL LD EAL L +S GD RRA+ L+ AA
Sbjct: 166 EDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSA 220
|
Length = 436 |
| >gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 4e-20
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 36/203 (17%)
Query: 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKS----------RVLEL 119
+ L LE H LF GP G GK ALA+A L + +
Sbjct: 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAG 61
Query: 120 NASDDR---------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
N D ++ VR ++ + SG +++I+++A+ M E
Sbjct: 62 NHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESG----------RRVVIIEDAERMNEA 111
Query: 171 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE 230
A NAL +T+E T F I +++ + SRC F PLSEE + + L
Sbjct: 112 AANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEAL-LQWL-----I 165
Query: 231 GLNLDAEALSTLSSISQGDLRRA 253
+ EA L +++ G A
Sbjct: 166 RQGISEEAAELLLALAGGSPGAA 188
|
This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188 |
| >gnl|CDD|203973 pfam08542, Rep_fac_C, Replication factor C C-terminal domain | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 7e-20
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQA 337
G PPE ++ + GDFD A + + ++ EG A +L QL +V++ DI D +
Sbjct: 1 GWPPPEDIKEILDSILKGDFDEARETLYELLVEGISAEDILKQLHEVLI-RLDIPDSLKL 59
Query: 338 RICKCLAEVDKCLVDGADEYLQLLDVAS 365
I K LAE++ L DGA E +QL + +
Sbjct: 60 EIIKELAEIEHRLSDGAKEIIQLEALIA 87
|
This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A. Length = 89 |
| >gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 2e-19
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 29/226 (12%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------ 106
KYRP+ +DV HQ+ + L N L++ H +F+GP G GKTT A +A +L
Sbjct: 11 KYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPI 70
Query: 107 ---------FGPELYK---SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
E+ K S VLE++A+ +RGI +R +G
Sbjct: 71 GNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGG---------- 120
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
YK+ I+DE +T+ + NAL +T+E F +I E + SRC F FK +
Sbjct: 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKV 180
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
V+ +C E + D E L ++ G +R +++++ A
Sbjct: 181 PLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQA 226
|
Length = 484 |
| >gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 4e-19
Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 73/299 (24%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTA--LAIA----HQL 106
K+RP+ +DV QE + + L N ++ H LF GP GTGKT+ A A A +
Sbjct: 9 KWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP 68
Query: 107 FG-P----ELYKS-------RVLELNASDDRGINVVRT---KIKTFAAVAVGSGQRRGGY 151
G P E+ K+ V+E++A+ + G++ +R K+K +A
Sbjct: 69 DGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVK-YAPSEA--------- 118
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP-------LA- 203
YK+ I+DE ++ A NAL +T+E EP LA
Sbjct: 119 ---KYKVYIIDEVHMLSTGAFNALLKTLE-------------------EPPAHVIFILAT 156
Query: 204 -----------SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252
SRC +F FK +S E + R+ +I ++EG+ + EAL ++ ++G +R
Sbjct: 157 TEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRD 216
Query: 253 AITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311
A++ L A +T +D + V+G + E ++ L GD A K + ++ EG
Sbjct: 217 ALSILDQAISFGDGKVTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEG 275
|
Length = 559 |
| >gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 1e-18
Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 29/249 (11%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------ 106
K+RP+ +D+ Q+ +V ++N L H L G G GKTT A +A L
Sbjct: 9 KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI 68
Query: 107 ---------FGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY- 156
E+ K L+L D RTK++ + Y P
Sbjct: 69 TSNPCRKCIICKEIEKGLCLDLIEID----AASRTKVEEMREIL------DNIYYSPSKS 118
Query: 157 --KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
K+ ++DE ++ + NAL +T+E + +F + +I + + SRC +F+ K +
Sbjct: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKII 178
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
SEE + + + +I +E ++ D AL ++ + G +R A+ L+ A L +I K++
Sbjct: 179 SEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVT 238
Query: 275 SVSGVIPPE 283
+ G++ +
Sbjct: 239 DMLGLLNEK 247
|
Length = 363 |
| >gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-18
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 30/170 (17%)
Query: 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLF----------GPELYKS 114
Q +V+++L N+++ H LF GP G GK AL A LF G
Sbjct: 2 QPKVIKLLKNSIKKNKLSHAYLFSGPDGVGKLELALEFAKALFCENPQDDEPCGECKSCK 61
Query: 115 RVLELN-------ASDDRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
R+ N + + I + +R I+ F+ K+ I+++A+
Sbjct: 62 RIENGNHPDVIIIEPEGKSIKIDQIRELIEEFSKKPFEGK----------KKVYIIEDAE 111
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
MTE A NAL +T+E + T F + + ++++ + SRC FKPLS
Sbjct: 112 KMTESAANALLKTLEEPPENTYFILLTSNPNKLLPTIRSRCQVINFKPLS 161
|
DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161 |
| >gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 5e-18
Identities = 63/295 (21%), Positives = 119/295 (40%), Gaps = 31/295 (10%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL 111
KYRP K + QE + ++L N + H +F GP G GKT+ A A +
Sbjct: 8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNP 67
Query: 112 YKSRV------------------LELNASDDRGINVVRTKIKT-FAAVAVGSGQRRGGYP 152
+EL+A+ + G++ +R I
Sbjct: 68 KDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFK-------- 119
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
YK+ I+DEA ++ A NAL +T+E K F F +I + SRC ++ FK
Sbjct: 120 ---YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFK 176
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
L+ + + I +E + ++ A+ ++ ++ G LR ++ L + S I +D
Sbjct: 177 KLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIED 236
Query: 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327
+ G++ L + + D + +N + ++G L +++++
Sbjct: 237 INKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLID 291
|
Length = 605 |
| >gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 6e-18
Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 29/246 (11%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL---FGP 109
KYRP+ D+ QE V R L N ++T H LF G G GKT+TA +A L G
Sbjct: 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGL 68
Query: 110 ------------ELYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
E+ + R V E++ + + G++ +R + + S R
Sbjct: 69 TAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRE--NVKYLPSRSR------- 119
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
YKI I+DE ++ +A NAL +T+E +F F ++ + SRC +F F+ +
Sbjct: 120 -YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRI 178
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+ + R+ +I ++EG+++ AL+ ++ G +R +++ L G ++ D+
Sbjct: 179 PLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVA 238
Query: 275 SVSGVI 280
+ GV+
Sbjct: 239 ELLGVV 244
|
Length = 576 |
| >gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 6e-18
Identities = 65/275 (23%), Positives = 118/275 (42%), Gaps = 17/275 (6%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGP--- 109
KYRP+ DV Q + L N +E + +LF GP G GKTT A +A ++ P
Sbjct: 10 KYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYD 69
Query: 110 ---ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
E + + EL+A+ + ++ +R I + +G+ YKI I+DE
Sbjct: 70 DPNEDFSFNIFELDAASNNSVDDIRNLIDQ-VRIPPQTGK---------YKIYIIDEVHM 119
Query: 167 MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI 226
++ A NA +T+E F +II + SRC F FK ++ + + + I
Sbjct: 120 LSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGI 179
Query: 227 CNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286
+EG+ + +AL ++ + G LR A++ G +IT + + ++ +
Sbjct: 180 AVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYI 239
Query: 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQL 321
+ + N I+ +G+ ++ L
Sbjct: 240 NVTDLILENKIPELLLAFNEILRKGFDGHHFIAGL 274
|
Length = 367 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-18
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 41/151 (27%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV------VRTKIKTFA 138
+L YGPPGTGKTT A A+A +L + +E++ S+ V +R + F
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKEL------GAPFIEISGSELVSKYVGESEKRLR---ELFE 51
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETY-SKVT 186
A + PC +I +DE D++ + N L ++ + S ++
Sbjct: 52 AAKKLA-------PC----VIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLS 100
Query: 187 RFFFIC--NYISRIIEPL-ASRCAKFRFKPL 214
+ I N ++ L R + PL
Sbjct: 101 KVIVIAATNRPDKLDPALLRGRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-17
Identities = 74/285 (25%), Positives = 123/285 (43%), Gaps = 30/285 (10%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTA--LAIA 103
+ Q K+R + ++ QE VV+ L N + H LF GP G GKT+TA LA A
Sbjct: 2 TVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKA 61
Query: 104 HQLFGPE--------------LYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
+ + + V+E++A+ ++ R I+ V
Sbjct: 62 VNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIER---VQFRPAL 118
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
R YK+ I+DE ++ A NAL +T+E F + ++ + SRC
Sbjct: 119 AR-------YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRC 171
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+F F S M++ + I EG+NL+ AL ++ + G +R A LQ A +G
Sbjct: 172 QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGG 231
Query: 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311
I+ + S+ G+ E V+ L + D A + +N + A+G
Sbjct: 232 EISLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADG 276
|
Length = 585 |
| >gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 82/310 (26%), Positives = 134/310 (43%), Gaps = 77/310 (24%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF---GP 109
KYRPK ++ QE V + L+ L+ H LF G G+GKT++A A L GP
Sbjct: 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGP 66
Query: 110 ELYKSR------------------VLELNASDDRGINVVR-----TKIK-TFAAVAVGSG 145
S ++E++A+ +RGI+ +R TK K + A
Sbjct: 67 ---SSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMAR------ 117
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME---TYSKVTRFFFICNYISRIIEPL 202
+KI I+DE +T++A NAL +T+E +Y K +I +PL
Sbjct: 118 ----------FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVK---------FILATTDPL 158
Query: 203 A------SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256
SR FRFK + + + S + I +EG++ + EAL L+ G LR +T
Sbjct: 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTL 218
Query: 257 LQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI-----IAEG 311
L A ++IT + + G++ P +E F + N++ + E
Sbjct: 219 LDQAIIYCKNAITESKVADMLGLLDPSKLEDFFQA-------ILNQDKEKLFELLKELED 271
Query: 312 YPASLLLSQL 321
Y A ++L ++
Sbjct: 272 YEAEMVLDEM 281
|
Length = 535 |
| >gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 8e-17
Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 29/269 (10%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S + K RP+ + Q+ VV L +++E+ + +F GP G GKT++A A A
Sbjct: 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARC 61
Query: 106 L---FGP------ELYKSR---------VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L GP E + V+E++ + + + VR +IK S +
Sbjct: 62 LNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVR-QIKEEIMFPPASSR- 119
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
Y++ I+DE ++ A NAL +T+E F F + ++ + SRC
Sbjct: 120 --------YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQ 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
F F+ LS E + + + +C E+ + + EAL ++ S G +R A T S
Sbjct: 172 HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSD 231
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGD 296
IT + + S G+ E +E L + + D
Sbjct: 232 ITLEQIRSKMGLTGDEFLEKLASSILNED 260
|
Length = 563 |
| >gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 29/253 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q K+RPK ++ QE VVR LTN LE H LF G G GKTT A +A
Sbjct: 2 SYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKS 61
Query: 106 L-------FGP--------ELYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L P E+ R ++E++A+ + ++ +R + A A G+
Sbjct: 62 LNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDN-AQYAPTRGR- 119
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
+K+ I+DE +++ A NA+ +T+E + +F +I + SRC
Sbjct: 120 --------FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+F K + ++ S + HI +E + DA AL L+ + G +R A++ L A G +
Sbjct: 172 QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGT 231
Query: 268 ITSKDLISVSGVI 280
+ ++ ++ G I
Sbjct: 232 VNESEVRAMLGAI 244
|
Length = 527 |
| >gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 3e-16
Identities = 62/238 (26%), Positives = 103/238 (43%), Gaps = 37/238 (15%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQ 105
S Q KYRPK+ D+ QE + R + N+L H +F G G GKTT A A
Sbjct: 2 SYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKA 61
Query: 106 LFGPELYKS--------------------------RVLELNASDDRGINVVRTKIKTFAA 139
+ + + E +A+ + ++ +R +
Sbjct: 62 VNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLREN--- 118
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199
V G ++G Y++ I+DE ++ A NA +T+E F F + +I
Sbjct: 119 --VRYGPQKG-----RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171
Query: 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
+ASRC +F FK + E + ++ IC EG+++DA+AL + +QG +R A + L
Sbjct: 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSIL 229
|
Length = 397 |
| >gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 5e-16
Identities = 67/269 (24%), Positives = 116/269 (43%), Gaps = 42/269 (15%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFG 108
P+ KYRP ++ QE +V+VL+ T+ L G G GKTT+A IA +
Sbjct: 10 PFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69
Query: 109 PELY----------------------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146
L ++E++A+ ++ +R I++ +
Sbjct: 70 SALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG-- 127
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
+KI I+DE +++ A NAL +T+E F F + +I + SRC
Sbjct: 128 --------KHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRC 179
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
++ + LS E + + +I +E L D EAL ++ S+G R A++ L AA +
Sbjct: 180 QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASM--- 236
Query: 267 SITSKDLISVSGVIPPEVVEGLFAVCRSG 295
S S ++IS P+V+ + + S
Sbjct: 237 SAKSDNIIS------PQVINQMLGLVDSS 259
|
Length = 507 |
| >gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 8e-16
Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 35/245 (14%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL---FGP 109
KYRP KD+ Q+ +VR+L N P +L G G GKTT A I+ L GP
Sbjct: 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGP 65
Query: 110 ---------------ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
V+E++A+ + ++ ++ ++ + + S
Sbjct: 66 TSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISS---------- 115
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
+K+ I+DE ++ A NAL +T+E + +F + +I + SRC +F + +
Sbjct: 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKI 175
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274
+ + ++ I +E + D E+L ++ S G +R A+ L+ AA I S + I
Sbjct: 176 PTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAA------IYSNNKI 229
Query: 275 SVSGV 279
S V
Sbjct: 230 SEKSV 234
|
Length = 491 |
| >gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 78.6 bits (193), Expect = 1e-15
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 29/253 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
+ Q K+RPK D+ QE VV+ L N L+ H L G G GKTT A +A
Sbjct: 2 AYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61
Query: 106 L---------------FGPELYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L ++ R +LE++A+ + GI+ +R ++ A A +G+
Sbjct: 62 LNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN-AQYAPTAGK- 119
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
YK+ I+DE +++ A NA+ +T+E + +F ++ + SRC
Sbjct: 120 --------YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCL 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+F + ++ + ++ + H+ + E + + AL L + G +R A++ L A L
Sbjct: 172 QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGK 231
Query: 268 ITSKDLISVSGVI 280
+ D+ + G +
Sbjct: 232 VAENDVRQMIGAV 244
|
Length = 709 |
| >gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 2e-15
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIA-- 103
S Q KYRP + D+ QE + + N+L H +F G G GKTT A A
Sbjct: 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKA 61
Query: 104 ---HQLFGPELYKSRVLE----------------LNASD-DRGINVVRTKIKTFAAVAVG 143
++ +Y V E LN S+ D N I+ V
Sbjct: 62 VNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRE-NVR 120
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
G ++G Y++ I+DE ++ A NA +T+E F F + +I +A
Sbjct: 121 YGPQKG-----RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIA 175
Query: 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
SRC +F FK + + + S++ IC EG+ +DA+AL ++ +QG +R A + L
Sbjct: 176 SRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSIL 229
|
Length = 620 |
| >gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (187), Expect = 5e-15
Identities = 73/294 (24%), Positives = 117/294 (39%), Gaps = 29/294 (9%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQ 105
S +YRP+ +VA QE V +L+ E P LF G G GKTT A A
Sbjct: 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKA 61
Query: 106 LFGPELYKSR------------------VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L V+E++ + +RGI+ + ++K A+G
Sbjct: 62 LNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAK-RLKE----AIGYAPM 116
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
G YK+ I+DEA +T +A NAL +T+E F + + SRC
Sbjct: 117 EG-----RYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQ 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
F F LSE + + + + EG++ D A+ ++ + G +R +++ L L S
Sbjct: 172 HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQL 321
+T V G+ E+ L + D V ++ G L +L
Sbjct: 232 LTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLREL 285
|
Length = 624 |
| >gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 30/235 (12%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLF 107
Q KYRP+ ++ Q V R L++ LE H LF G G GKTT A +A L
Sbjct: 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62
Query: 108 GPELYKSRVLELNAS-----DDRGINVV------RTKIKT----FAAVAVGSGQRRGGYP 152
S E+ A+ + R I+++ RTK++ V Q R
Sbjct: 63 CETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGR---- 118
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
+K+ ++DE ++ + NAL +T+E + +F F ++ + SRC +F +
Sbjct: 119 ---FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLR 175
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLR-------RAITYLQGA 260
PL+ + ++ + I +E + D +A+ ++ +QG LR +AI Y QGA
Sbjct: 176 PLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGA 230
|
Length = 702 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 2e-13
Identities = 30/144 (20%), Positives = 47/144 (32%), Gaps = 21/144 (14%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
+L GPPG+GKTT A A+A +L P V+ ++ D + + +
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 144 SGQRRGG--------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV--------TR 187
P ++ILDE S+ + Q AL +E +
Sbjct: 61 GSGELRLRLALALARKLKP--DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
Query: 188 FFFICNYISRIIEPLASRCAKFRF 211
N + L R R
Sbjct: 119 VILTTNDEKDLGPALLRRRFDRRI 142
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 4e-13
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 34/233 (14%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTA--LAIA 103
S Q K+RP+ + QE VVR LT+ LE H LF G G GKTT + LA +
Sbjct: 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKS 61
Query: 104 HQLFGP------------------ELYKSRV---LELNASDDRGINVVRTKIKTFAAVAV 142
G E+ R +E++A+ +RG++ + ++ A A
Sbjct: 62 LNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEM-AQLLDKAVYAP 120
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
+G+ +K+ ++DE +T A NA+ +T+E + +F +I +
Sbjct: 121 TAGR---------FKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 171
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
SRC +F K + + S + I EEG+ + AL L+ +QG +R A++
Sbjct: 172 LSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALS 224
|
Length = 700 |
| >gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 6e-13
Identities = 61/258 (23%), Positives = 110/258 (42%), Gaps = 29/258 (11%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
S Q KYRP+ +VA Q+ + L + LET H LF G G GKTT +A
Sbjct: 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKC 61
Query: 106 LFGPELYKSR------------------VLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
L + ++E++A+ G+ + + + Q
Sbjct: 62 LNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETK---EILDNIQYMPSQG 118
Query: 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207
R YK+ ++DE +++ + NAL +T+E + +F +I + SRC
Sbjct: 119 R-------YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCI 171
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267
+ K +S+ + ++ I +E +N D ++L ++ ++G LR A++ L A G
Sbjct: 172 QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGE 231
Query: 268 ITSKDLISVSGVIPPEVV 285
+ + + G+I E V
Sbjct: 232 LKQAQIKQMLGIIDSEEV 249
|
Length = 546 |
| >gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 7e-13
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
K TRF I N S+I+ + SRC + RFKP S I E + L
Sbjct: 39 TAPPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRL------EAIAWLE-----DQGL 87
Query: 240 STLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEG----LFAVCRSG 295
++++++GD R+AI LQ A ++ +P + + L + +
Sbjct: 88 EEIAAVAEGDARKAINPLQALA--ALEIGEESIYEALLLALPESLAQLAALELLKLAENK 145
Query: 296 DFDLANKEVNNIIAEGYPASLLLSQLFDVVV--ETEDISDEQQARICKCLAEVDKCLVDG 353
+ K ++ EG LL QL ++ + I +E+ A + LA+ + L+DG
Sbjct: 146 FLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDG 205
Query: 354 ADEYLQL 360
+QL
Sbjct: 206 LLALIQL 212
|
Length = 230 |
| >gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98
+PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GK T
Sbjct: 7 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56
|
Length = 846 |
| >gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 26/222 (11%)
Query: 57 PKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLF---GPELY 112
P + + EE L H +LF GP G GK T A +A+ + P
Sbjct: 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEA 78
Query: 113 KSRVL--ELNASDDRGI------NV------VRTKIKTFAAVAVGSGQRRGGY------P 152
+ + + R I N+ K F RR G+
Sbjct: 79 PETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSG 138
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
++I+I+D AD M +A NA+ +T+E F I + R++ + SRC K
Sbjct: 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLK 198
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254
PL ++ + + H+ D E L S+G +R+A+
Sbjct: 199 PLDDDELKKALSHL--GSSQGSDGEITEALLQRSKGSVRKAL 238
|
Length = 351 |
| >gnl|CDD|236011 PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 31/222 (13%)
Query: 66 QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLF----GPELYKSRVLELN 120
Q + +LT ++ P LF GP G G+ AL L + + R+ E N
Sbjct: 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68
Query: 121 ASDDRGIN---VVRTKIKTFAAVAVGSGQRRGGYPC---------------PPY----KI 158
D + + K+ T A+ A +G +R P PP K+
Sbjct: 69 HPDLLWVEPTYQHQGKLIT-ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKV 127
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218
+++++A++M E A NAL +T+E T I ++ + SRC F LS+E
Sbjct: 128 VVIEDAETMNEAAANALLKTLEEPGNGT-LILIAPSPESLLPTIVSRCQIIPFYRLSDEQ 186
Query: 219 MSSRVLHIC-NEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259
+ VL +EE LN++ L L+ S G I LQ
Sbjct: 187 LEQ-VLKRLGDEEILNINFPELLALAQGSPGAAIANIEQLQS 227
|
Length = 314 |
| >gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 73/300 (24%), Positives = 124/300 (41%), Gaps = 38/300 (12%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------ 106
KYRP +V QE V L++ L+ H LF GP G GKT++A +A L
Sbjct: 6 KYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGP 65
Query: 107 -------------FGPELYKS-RVLELNASDDRGINVVRT-KIKTFAAVAVGSGQRRGGY 151
P S V+EL+A+ G++ R + + F A A Q R
Sbjct: 66 TATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPA----QSR--- 118
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211
Y+I I+DEA +T NAL + +E + F F +++ + SR + F
Sbjct: 119 ----YRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPF 174
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL-QGAARLFGSSITS 270
+ L M + + IC +EG+ +D + G R ++ L Q A + +T
Sbjct: 175 RLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTY 234
Query: 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYP----ASLLLSQLFDVVV 326
+ + + G +++ + D + ++I G+ A+ LL + D++V
Sbjct: 235 QRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIV 294
|
Length = 584 |
| >gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-12
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 67 EEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELYKSRV--LELNASD 123
E + + N++ H + G G GK+ A IA ++ G + V +E +
Sbjct: 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69
Query: 124 DRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPY----KIIILDEADSMTEDAQNALRR 177
+ I V +R I+ PY K+II+ ++ MTE AQNA +
Sbjct: 70 KKSIGVDDIRNIIEEVNK--------------KPYEGDKKVIIIYNSEKMTEQAQNAFLK 115
Query: 178 TMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAE 237
T+E K +C + +I++ + SRC ++ LS+E + + + + ++ E
Sbjct: 116 TIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI----SYKYNDIKEE 171
Query: 238 ALSTLSSISQG 248
+ + S G
Sbjct: 172 EKKSAIAFSDG 182
|
Length = 313 |
| >gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 40/214 (18%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQL----- 106
KYRP+ D+ QE +VR LTN ET ML G G GKTTTA +A L
Sbjct: 17 KYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFML-TGVRGVGKTTTARILARALNYEGP 75
Query: 107 ---FGPEL------------YKSR---VLELNASDDRGINVVRTKIKT--FAAVAVGSGQ 146
GP + + R VLE++A+ G++ +R I++ + V
Sbjct: 76 DGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPV-----S 130
Query: 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
R YK+ I+DE ++ A NAL +T+E +F F I ++ + SRC
Sbjct: 131 AR-------YKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRC 183
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS 240
+F + + +V+++ + I +EG+ ++ EAL+
Sbjct: 184 QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALA 217
|
Length = 598 |
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 64/244 (26%), Positives = 105/244 (43%), Gaps = 36/244 (14%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAH----QLFG 108
KYRP + V QE + L N + T H LF GP G GKTT A A Q
Sbjct: 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT 69
Query: 109 PE------------LYKSR---VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
+ + R + EL+A+ + ++ +R I+ Q R P
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIE----------QVR--IP- 116
Query: 154 PP---YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210
P YKI I+DE +++ A NA +T+E F +I+ + SRC F
Sbjct: 117 PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFD 176
Query: 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270
F + + + + ++ ++EG+ + EAL+ ++ + G +R A++ G +IT
Sbjct: 177 FNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITY 236
Query: 271 KDLI 274
K +I
Sbjct: 237 KSVI 240
|
Length = 614 |
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 35/231 (15%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAH 104
+ +P KYRP++ ++ QE + L N L + P LF GP GTGKT++A +A
Sbjct: 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAK 60
Query: 105 QLF-----GP--------ELYKS-------RVLELNASDDRGINVVRTKIK--TFAAVAV 142
L P EL ++ V+E++A+ + G++ +R I+ FA V
Sbjct: 61 SLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV-- 118
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
Q R +K+ ++DE ++ A NAL +T+E F R++ +
Sbjct: 119 ---QAR-------WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253
SRC +F F+ + E M + I +E + ++ EAL+ ++ SQG LR A
Sbjct: 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDA 219
|
Length = 620 |
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 35/237 (14%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL--FGP- 109
KYRP+ ++ QE VV+ LTN L H LF G G GKTT + +A L GP
Sbjct: 9 KYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPD 68
Query: 110 -----------------ELYKSRVL---ELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149
++ R + EL+A+ +RG++ V+ ++ AV R
Sbjct: 69 GQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQ--AVYKPVQGR-- 124
Query: 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
+K+ ++DE +T A NA+ +T+E + +F ++ + SRC +F
Sbjct: 125 ------FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQF 178
Query: 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+P++ E + + + E + + +AL L+ ++G +R A++ L A FGS
Sbjct: 179 NLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALS-LTDQAIAFGS 234
|
Length = 618 |
| >gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 6e-10
Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 39/317 (12%)
Query: 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQ 105
+ Q K+RP+ ++V Q VVR L+N L+ H LF G G GKTT + +A
Sbjct: 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKC 61
Query: 106 L-------FGP--------ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150
L P E+ + R +L D RTK++ + +
Sbjct: 62 LNCEKGVSANPCNDCENCREIDEGRFPDLFEVD----AASRTKVED-------TRELLDN 110
Query: 151 YPCPP----YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
P P +K+ ++DE ++ + NAL +T+E +F ++ + SRC
Sbjct: 111 IPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRC 170
Query: 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
+F L +++ H+ EE + + AL L+ + G +R A++ L +
Sbjct: 171 LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNG 230
Query: 267 SITSKDLISVSGVIPP----EVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLF 322
+ D+ ++ G I P +++E L A ++GD L V ++ +G S L+ L
Sbjct: 231 KVLIADVKTMLGTIEPLLLFDILEALAA--KAGDRLLGC--VTRLVEQGVDFSNALADLL 286
Query: 323 DVVVETEDISDEQQARI 339
++ + I +A I
Sbjct: 287 SLLHQIAIIQTVPEALI 303
|
Length = 509 |
| >gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 42/234 (17%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALA 101
QS P ++ RP+ +++ Q+ ++ R+L ++ ++ YGPPG GKTT A
Sbjct: 12 SQSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71
Query: 102 IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161
IA+ ++ LNA G+ +R ++ + +R + I+ +
Sbjct: 72 IANH------TRAHFSSLNAV-LAGVKDLRAEVDR-------AKERLERH--GKRTILFI 115
Query: 162 DEADSMTEDAQNAL-----RRTMETYSKVTR--FFFICNYISRIIEPLASRCAKFRFKPL 214
DE + Q+AL T+ T +F + + L SR FR K L
Sbjct: 116 DEVHRFNKAQQDALLPWVENGTITLIGATTENPYF-------EVNKALVSRSRLFRLKSL 168
Query: 215 SEEVMSS---RVLHICNEEG-----LNLDAEALSTLSSISQGDLRRAITYLQGA 260
S+E + R L E G ++L+ EA L ++ GD R + L+ A
Sbjct: 169 SDEDLHQLLKRALQDK-ERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELA 221
|
Length = 725 |
| >gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-10
Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 50/243 (20%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIA-----HQLFGP 109
P++ + L + + H L GP G GK T A +A G
Sbjct: 14 HPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGG 73
Query: 110 ELYKSRV--LELNASD-----------------DRGIN----VVRTKI--------KTFA 138
+ L ++ +R N +RT I +F
Sbjct: 74 DGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFF 133
Query: 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198
+ G R ++I+D AD M +A NAL + +E + F + + +R+
Sbjct: 134 GLTAAEGGWR---------VVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARL 184
Query: 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258
+ + SRC K R +PL+ E + L G +L + + L+++++G + RA+
Sbjct: 185 LPTIRSRCRKLRLRPLAPEDVID-ALA---AAGPDLPDDPRAALAALAEGSVGRALRLAG 240
Query: 259 GAA 261
G
Sbjct: 241 GDG 243
|
Length = 365 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 9e-10
Identities = 60/221 (27%), Positives = 100/221 (45%), Gaps = 29/221 (13%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQL------ 106
K+RPK + QE VVR LT+ L+ H LF G G GKTT + A L
Sbjct: 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV 68
Query: 107 -FGP--------ELYKSRVL---ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154
P E+ + R + E++A+ +RG++ + ++ AV R
Sbjct: 69 TSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDAR------- 119
Query: 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214
+K+ ++DE +T A NA+ +T+E +F +I + SRC +F K +
Sbjct: 120 -FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQM 178
Query: 215 SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255
+ S + I EE + + +AL L+ +QG +R A++
Sbjct: 179 PAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALS 219
|
Length = 830 |
| >gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 73/294 (24%), Positives = 117/294 (39%), Gaps = 63/294 (21%)
Query: 20 TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET 79
T K + + S K E E KM + + ++P EK RPK ++ QEE ++ L L
Sbjct: 27 TNKITIDKES--KKELEKLNKMRAI-RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG 83
Query: 80 ANCPHMLFYGPPGTGKTTTA-----LAIAHQLFGPELYKSRVLELNAS----DDRGI--- 127
N H++ YGPPG GKT A A + P + +E++A+ D+RGI
Sbjct: 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNP-ASPFKEGAAFVEIDATTARFDERGIADP 142
Query: 128 --NVVRTKIKTFAAVAVGSGQRRGGYPCPPY--------KIIILDEADSMTEDAQNALRR 177
V I A +G G P P ++ +DE + N L +
Sbjct: 143 LIGSVHDPIYQGAG-PLGI----AGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLK 197
Query: 178 TMETYSKV---TRFFF-----ICNYISRIIE----------------------PLASRCA 207
+E KV + ++ I ++I I + L SRC
Sbjct: 198 VLED-RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCV 256
Query: 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261
+ F+PL +E + + + G+NL+ AL + + R A+ +Q AA
Sbjct: 257 EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYASNG-REAVNIVQLAA 309
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]. Length = 531 |
| >gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24 | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 46/255 (18%)
Query: 49 QPWVEKYRPKQVKDVA-HQEEVVRV----LTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+PWVEKY+P+ ++A H++++ V LE A +L GP G GK+TT ++
Sbjct: 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILS 131
Query: 104 HQL-------FGPELYKSRVLELNASDDRGINVVR--TKIKTFAAV---AVGSGQRRGGY 151
+L P L + + + ++I+ F+ A Q G
Sbjct: 132 KELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDD 191
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMET-YSKVTRFFFICNYISRIIEPLAS------ 204
KII++++ + AL + Y + R + I+ +E +
Sbjct: 192 LMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVF-IITESLEGDNNQRRLLF 250
Query: 205 --------------RCAKFRFKPLSEEVMSSRVLHICNEEGLNL-------DAEALSTLS 243
R + F P++ +M + I E ++ L
Sbjct: 251 PAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLC 310
Query: 244 SISQGDLRRAITYLQ 258
GD+R AI LQ
Sbjct: 311 QGCSGDIRSAINSLQ 325
|
All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 637 |
| >gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 3e-08
Identities = 55/252 (21%), Positives = 93/252 (36%), Gaps = 44/252 (17%)
Query: 49 QPWVEKYRPKQVKDVA-HQEEVVRV----LTNTLETANCPHMLFYGPPGTGKTTTALAIA 103
+ W EKY+P++ ++A H++++ V LE+ +L GP G GK+TT ++
Sbjct: 7 ELWTEKYKPRRRDELAIHKKKIAEVDHWLKAVFLESNKQLILLLTGPSGCGKSTTVKVLS 66
Query: 104 HQL-------FGPELYKSRVLELNASDDRGINVVR-----TKIKTFAAVAVGSGQRRGGY 151
+L PE + E D RG +V + + F G +GG
Sbjct: 67 KELGIEIIEWSNPEYLHNPDNECQKPDFRGDCIVNSLSQMEQFREFLLRGARYGSLQGGG 126
Query: 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI------CNYISRIIEP---- 201
K+I+++E + R + + + CN +
Sbjct: 127 --LKKKLILVEELPNQFYSDAEKFREVIREVLQSIWHLPLIFCLTECNSLEGDNNQDRFG 184
Query: 202 ------------LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ-- 247
+ R F P++ M ++ I +EG ++ S L I Q
Sbjct: 185 IDAETIMTKDILIMPRIDTITFNPIAPTFMKKALVRISVQEGKLKSPKSDSKLEVICQEA 244
Query: 248 -GDLRRAITYLQ 258
GDLR AI LQ
Sbjct: 245 GGDLRSAINSLQ 256
|
Length = 490 |
| >gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 61/300 (20%), Positives = 103/300 (34%), Gaps = 47/300 (15%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA- 141
+++ YGP GTGKT T + +L V+ +N +RT + + +
Sbjct: 43 SNIIIYGPTGTGKTATVKFVMEELEES-SANVEVVYINC------LELRTPYQVLSKILN 95
Query: 142 -VGSGQRRGGYPCPPYK-------------IIILDEADSMTEDAQNALR---RTMETYSK 184
+G G K I+ILDE D++ + L R
Sbjct: 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKV 155
Query: 185 VTRFFFICN---YISRIIEPLASRCAKFR--FKPLSEEVMSSRVLHICNEEGLNLDAEAL 239
+ N ++ + + S F P + E + +L EEG +
Sbjct: 156 KVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYD-ILRERVEEGFSAGVIDD 214
Query: 240 STLSSISQ------GDLRRAITYLQGAARLF---GSSITSKDLIS-VSGVIPPEVVEGLF 289
L I+ GD R+AI L+ A + GS S+D + I +V+E +
Sbjct: 215 DVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVL 274
Query: 290 AVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKC 349
L K V I E + +L+DV + Q R ++E++
Sbjct: 275 K-----TLPLHQKIVLLAIVELTV-EISTGELYDVYESLCERLRTSQRRFSDIISELEGL 328
|
Length = 366 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 17/83 (20%)
Query: 29 SPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA----NCP- 83
SPEK E+E+K + + RPK + + QE+V L ++ A
Sbjct: 6 SPEKQEEEMKIERSL------------RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALD 53
Query: 84 HMLFYGPPGTGKTTTALAIAHQL 106
H+L +GPPG GKTT A IA++L
Sbjct: 54 HVLLFGPPGLGKTTLAHIIANEL 76
|
Length = 332 |
| >gnl|CDD|222104 pfam13401, AAA_22, AAA domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-07
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 22/120 (18%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
+ G G+GKTT +A Q L RV+ + A + KI A+G
Sbjct: 6 IGVLTGESGSGKTTLLRRLARQ-----LPNRRVVYVEAPSLGTPKDLLRKI----LRALG 56
Query: 144 SGQRRGGYP------------CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191
G ++I+DEA ++ +A LR + K + +
Sbjct: 57 LPLSGGTTAELLEAILDALKRR-GRPLLIIDEAQHLSLEALEELRDLYDLSEKGIQVILV 115
|
Length = 124 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 48/229 (20%), Positives = 76/229 (33%), Gaps = 47/229 (20%)
Query: 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT--KIKTFAA 139
+L YGPPGTGKT A A+A + +SR + + S+ V + I+
Sbjct: 276 PKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEKNIRELFE 329
Query: 140 VAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETYSKVTRF 188
A R P II +DE DS+ L ++ K
Sbjct: 330 KA------RKLAPS----IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379
Query: 189 FFIC--NYISRIIEPLASRCAKFRFK---PLSEEVMSSRVLHICNEEGL-----NLDAEA 238
I N ++P R +F PL + + I + ++D E
Sbjct: 380 LVIAATNRP-DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEE 438
Query: 239 LSTLSSISQG-----DLRRAITYLQGAARLFGSSITSKDLISVSGVIPP 282
L+ ++ G +R A L+ +T D + I P
Sbjct: 439 LAEITEGYSGADIAALVREAA--LEALREARRREVTLDDFLDALKKIKP 485
|
Length = 494 |
| >gnl|CDD|181214 PRK08058, PRK08058, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 37/197 (18%)
Query: 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKS---------- 114
Q VV++L N++ H LF G GTGK TAL +A LF E
Sbjct: 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70
Query: 115 RVLELN-------ASDDRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
R+ N A D + I +R + F+ V S + K+ I++ AD
Sbjct: 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNK----------KVYIIEHAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
MT A N+L + +E S T + +I+ + SRC F+PL E + R+
Sbjct: 121 KMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ- 179
Query: 226 ICNEEGLNLDAEALSTL 242
EEG+ +E+L+TL
Sbjct: 180 ---EEGI---SESLATL 190
|
Length = 329 |
| >gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
Y++ +++ AD+M E A NAL +T+E + F + + R++ + SRC ++ P S
Sbjct: 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPS 168
Query: 216 EEVMSSRVLHICNEEGLNLDAEAL--------STLSSISQGDL 250
+ +G+ + A AL TL+ + +G L
Sbjct: 169 TAQAMQWL----KGQGITVPAYALKLNMGSPLKTLAMMKEGGL 207
|
Length = 319 |
| >gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETA---NCP--HMLFYGPPGTGKTTTALAIAHQL 106
RP+++ + QE+V L +E A H+L YGPPG GKTT A IA+++
Sbjct: 19 RPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 74
|
The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAIAHQL 106
RPK + + QE+V L +E A H+L YGPPG GKTT A IA+++
Sbjct: 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75
|
Length = 328 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
HMLF GPPGTGKTT A +A G L K V E++ +D G + ++ KT +
Sbjct: 314 HMLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAKTNEIIDS 373
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTE 169
G ++ LDEA ++ E
Sbjct: 374 ALG-----------GVLFLDEAYTLVE 389
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQL 106
H+L YGPPG GKTT A IA+++
Sbjct: 32 HLLLYGPPGLGKTTLAHIIANEM 54
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
| >gnl|CDD|221912 pfam13086, AAA_11, AAA domain | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 35/186 (18%), Positives = 58/186 (31%), Gaps = 44/186 (23%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVL-------------ELNASDDRGINVVRT 132
L GPPGTGKTTT + I QL +VL E G+ +VR
Sbjct: 21 LIQGPPGTGKTTTIVEIIKQLLSN-APGKKVLVCAPSNSAVDNILERLLEQKFGLKIVR- 78
Query: 133 KIKTFAAVAVGSGQRRGGYPCPPYKI--IILDEADSMTEDAQNALRRTMETYSKVTRFFF 190
+GS R Y + ++ + + + + + E
Sbjct: 79 ---------IGSPAREIHEDVLQYSLEYLLEAKFEQLLKRIRKLKSLLEEKSKLKRERRK 129
Query: 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDL 250
+ + I ++ + L R E + + V +C +TLS L
Sbjct: 130 LRSEIKKLKKELERL----RKSIRKEILDEADV--VC------------TTLSGAGSSLL 171
Query: 251 RRAITY 256
+
Sbjct: 172 EGLKKF 177
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. Length = 220 |
| >gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
RP+ ++ QE ++ L + + H++ YGPPG GKTT A
Sbjct: 149 RPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAA 192
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC [Protein fate, Degradation of proteins, peptides, and glycopeptides, Cellular processes, Sporulation and germination]. Length = 615 |
| >gnl|CDD|180215 PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
K+++++ A++M +A NAL +++E S T I + SR++ + SRC + PL
Sbjct: 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC-PLP 165
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSS 244
S + L E + L TL+
Sbjct: 166 SNEESLQWLQQALPESDERERIELLTLAG 194
|
Length = 328 |
| >gnl|CDD|235898 PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 49/171 (28%)
Query: 83 PH-MLFYGPPGTGKTTTALAIAHQL--------------------FG----PELYKSR-- 115
PH +L +G G GK A +A L F P+ R
Sbjct: 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPE 80
Query: 116 VLELNAS----------DDRGINVVRT-----KIKTFAAV--AVGSGQRRGGYPCPPYKI 158
L A D G + KI+ A+ G G RGG ++
Sbjct: 81 ALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGA-----RV 135
Query: 159 IILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
++L A+++ A NAL +T+E T F + I R++ + SRC +F
Sbjct: 136 VVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQF 186
|
Length = 342 |
| >gnl|CDD|220440 pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 25/127 (19%)
Query: 83 PHMLF-YGPPGTGKTTTALAIAHQLFGPELYKSRVLEL-NASDDRGINVVRTKIK----- 135
+ G PGTGKT AL + +L +L ++ V N + V+ +
Sbjct: 1 KAVFLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPL---VLVLYEALAGDLKV 57
Query: 136 TFAAVAVGSGQRRGGY--PCPPYKIIILDEA----------DSMTEDAQNALRRTMETYS 183
+ P ++I+DEA + + Q L M+ +
Sbjct: 58 RKKKLFRKPTSFINNLHKAPPHEDVVIVDEAHRLWTKSDLYFNFSGPNQ--LDEIMKR-A 114
Query: 184 KVTRFFF 190
KV FF
Sbjct: 115 KVVVFFI 121
|
This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function. Length = 348 |
| >gnl|CDD|181190 PRK07993, PRK07993, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206
K++ L +A +T+ A NAL +T+E + T FF C +R++ L SRC
Sbjct: 110 KVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159
|
Length = 334 |
| >gnl|CDD|181538 PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 41/162 (25%)
Query: 86 LFYGPPGTGKTTTALAIAHQL--------------------FG----PELYKSRVLELNA 121
LF G G GKT A A L FG P+ Y + L+
Sbjct: 25 LFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFY--EITPLSD 82
Query: 122 SDDRGINVVRTKIKT------FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
+ G +++ KI + G R +I++ A+SM A N+L
Sbjct: 83 EPENGRKLLQIKIDAVREIIDNVYLTSVRGGLR---------VILIHPAESMNLQAANSL 133
Query: 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
+ +E F + + +++ + SRC K S E
Sbjct: 134 LKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHE 175
|
Length = 325 |
| >gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPE 110
L GP G GKT TALA+A L+G E
Sbjct: 600 LLVGPSGVGKTETALALAELLYGGE 624
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
+L GPPGTGK+ A +A L P Y + D +G + ++ +
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL 60
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175
R G +I +LDE + D N+L
Sbjct: 61 VRAAREG-------EIAVLDEINRANPDVLNSL 86
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 86 LFYGPPGTGKTTTALAIAHQ 105
L YGPPGTGKT A A+AH+
Sbjct: 169 LLYGPPGTGKTLLAKAVAHE 188
|
Length = 389 |
| >gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 38/147 (25%)
Query: 62 DVAHQEEVVRVLTN------TLETANCPHM----LFYGPPGTGKTTTALAIAHQLFGPEL 111
D+ QE VV L A M LF GPPG+G++ A A A L +
Sbjct: 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP 65
Query: 112 YK---------SRVLELNASDDR---------GINVVRTKIKTFAAVAVGSGQRRGGYPC 153
+ VL D R G++ VR + AA +G
Sbjct: 66 DEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTI-AARRPSTG-------- 116
Query: 154 PPYKIIILDEADSMTEDAQNALRRTME 180
++I+++++AD +TE A NAL + +E
Sbjct: 117 -RWRIVVIEDADRLTERAANALLKAVE 142
|
Length = 394 |
| >gnl|CDD|224383 COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 12/176 (6%)
Query: 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI--CNYISRI------IEPLASRCAK 208
++++L A+ +N + T + N + + ++ LA
Sbjct: 76 RLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVV- 134
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267
KPL E + + E GL +D EA+ L G+L ++ A
Sbjct: 135 VECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKE 194
Query: 268 ITSKDLIS-VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLF 322
IT +D+ VS V + + A+ + GD A + + +++ EG LL+ L
Sbjct: 195 ITLEDVEEVVSDVAEFNIFDLADALLK-GDVKKALRLLRDLLLEGEEPLKLLAALT 249
|
Length = 334 |
| >gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
HM+F G PGTGKTT A + L K ++E+ +D G + T KT +
Sbjct: 44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIK- 102
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYS 183
+ GG ++ +DEA S+ ++A + L + ME
Sbjct: 103 ---KALGG-------VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR 141
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group [Cellular processes, Sporulation and germination]. Length = 261 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 23/134 (17%), Positives = 35/134 (26%), Gaps = 32/134 (23%)
Query: 89 GPPGTGKTTTALAIAHQLFGPELYK-------SRVL------ELNASDDRGINVV----- 130
P G+GKT AL +L +R L L GI V
Sbjct: 7 APTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGG 66
Query: 131 ------RTKIKTFAAVAVGS------GQRRGGYPCPPYKIIILDEADSMTE--DAQNALR 176
+ + VG+ R ++ILDEA + L+
Sbjct: 67 TSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLK 126
Query: 177 RTMETYSKVTRFFF 190
++
Sbjct: 127 ILLKLPKDRQVLLL 140
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Query: 86 LFYGPPGTGKTTTALAIAHQ-------LFGPEL 111
L YGPPGTGKT A A+A+Q + G EL
Sbjct: 189 LLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221
|
Length = 406 |
| >gnl|CDD|177083 CHL00181, cbbX, CbbX; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLF 107
HM F G PGTGKTT AL +A L+
Sbjct: 61 HMSFTGSPGTGKTTVALKMADILY 84
|
Length = 287 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL---ELNASDDRGINVVRTKIKTFAAV 140
H+L GPPG GKT A A+A + G R+ +L SD G +
Sbjct: 45 HVLLEGPPGVGKTLLARALA-RALGLPF--VRIQCTPDLLPSDLLGTYAYAALLL----- 96
Query: 141 AVGSGQRR---GGYPCPPYKIIILDEADSMTEDAQNALRRTME 180
G+ R G I++LDE + + QNAL +E
Sbjct: 97 --EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137
|
Length = 329 |
| >gnl|CDD|180855 PRK07132, PRK07132, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
KI+I+ + + NAL +T+E K T F I++++ + SRC F K
Sbjct: 91 KKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147
|
Length = 299 |
| >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.004
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
DV QE+ R L + A ++L GPPG+GKT A
Sbjct: 3 ADVKGQEQAKRALE--IAAAGGHNLLMIGPPGSGKTMLA 39
|
Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 |
| >gnl|CDD|221955 pfam13173, AAA_14, AAA domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.004
Identities = 32/134 (23%), Positives = 45/134 (33%), Gaps = 21/134 (15%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145
+ GP GKTT L F EL +L +N D R A + +
Sbjct: 6 VITGPRQVGKTTLLL-----QFLKELLSENILYINLDDPR--------FLRLALLDLLEE 52
Query: 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF----ICNYISRIIEP 201
+ P Y + LDE D ++AL+R + + R I
Sbjct: 53 FLKLLLPGKKY--LFLDEI-QKVPDWEDALKRLYDDGRNL-RIILTGSSSLLLSKEIATS 108
Query: 202 LASRCAKFRFKPLS 215
LA R + PLS
Sbjct: 109 LAGRAEELELYPLS 122
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 127 |
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLS 215
+K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K L+
Sbjct: 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLT 179
Query: 216 EEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266
++ + +++ HI +E L +AEAL+ L+ + G +R A++ L A FG
Sbjct: 180 QDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALS-LTDQAIAFGG 229
|
Length = 944 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 100.0 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 100.0 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 100.0 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 100.0 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 100.0 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 100.0 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 100.0 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 100.0 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 100.0 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 100.0 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 100.0 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 100.0 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 100.0 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 100.0 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 100.0 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 100.0 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 99.98 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.98 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.98 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.97 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 99.95 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.95 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 99.95 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.94 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 99.94 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.94 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.93 | |
| PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 99.93 | |
| PRK05907 | 311 | hypothetical protein; Provisional | 99.93 | |
| PRK05629 | 318 | hypothetical protein; Validated | 99.93 | |
| PRK07914 | 320 | hypothetical protein; Reviewed | 99.92 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.92 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.92 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.92 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 99.91 | |
| PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 99.9 | |
| PRK08487 | 328 | DNA polymerase III subunit delta; Validated | 99.89 | |
| PRK05574 | 340 | holA DNA polymerase III subunit delta; Reviewed | 99.89 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 99.89 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.88 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.87 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.86 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.86 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.85 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.85 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.84 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 99.84 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.84 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.84 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 99.83 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.83 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.83 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 99.83 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 99.83 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.81 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.81 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.8 | |
| COG1466 | 334 | HolA DNA polymerase III, delta subunit [DNA replic | 99.79 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.79 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.78 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.78 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 99.77 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.77 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.77 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 99.76 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.76 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.75 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.75 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.75 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.74 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.73 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.72 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.72 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.71 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.71 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.7 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.69 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 99.69 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.68 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.68 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.67 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.66 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.65 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 99.64 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 99.64 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.64 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.64 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.63 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.63 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.62 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.62 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 99.61 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.61 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.61 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.6 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.6 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.6 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.59 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 99.59 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.59 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.58 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.58 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.58 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.58 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.57 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 99.56 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.56 | |
| PRK06526 | 254 | transposase; Provisional | 99.55 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.55 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.55 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.54 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.54 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 99.54 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.54 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 99.53 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 99.52 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.51 | |
| PRK08181 | 269 | transposase; Validated | 99.51 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.51 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.5 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.49 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.48 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.48 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.47 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 99.47 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 99.46 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.46 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.46 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 99.46 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.45 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.45 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.45 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 99.45 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 99.44 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.44 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 99.44 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.43 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.43 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 99.42 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.42 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.42 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.42 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 99.41 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.41 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.4 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 99.4 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.38 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 99.38 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.38 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.36 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.35 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.35 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 99.35 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.34 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.33 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.31 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 99.31 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 99.3 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.3 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 99.3 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.28 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 99.27 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.26 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.26 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 99.25 | |
| PHA02244 | 383 | ATPase-like protein | 99.25 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.24 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 99.24 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.23 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.23 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.23 | |
| PF06144 | 172 | DNA_pol3_delta: DNA polymerase III, delta subunit; | 99.23 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 99.22 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.22 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.21 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 99.21 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.19 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 99.19 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.17 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 99.17 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.17 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.15 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 99.14 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 99.1 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 99.09 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 99.09 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.07 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 99.07 | |
| PRK12377 | 248 | putative replication protein; Provisional | 99.07 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 99.06 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 99.06 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.05 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 99.04 | |
| PF13173 | 128 | AAA_14: AAA domain | 99.03 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.02 | |
| PRK08116 | 268 | hypothetical protein; Validated | 99.01 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 99.01 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 99.01 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 99.0 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.99 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.98 | |
| PF08542 | 89 | Rep_fac_C: Replication factor C C-terminal domain; | 98.97 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 98.95 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.92 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 98.92 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.91 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.9 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.89 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.89 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 98.89 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 98.88 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.87 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.87 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.84 | |
| PF12169 | 143 | DNA_pol3_gamma3: DNA polymerase III subunits gamma | 98.82 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.8 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.8 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.77 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.76 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.75 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 98.69 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 98.68 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 98.66 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 98.66 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.62 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.62 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.62 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 98.59 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 98.57 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 98.57 | |
| KOG0477 | 854 | consensus DNA replication licensing factor, MCM2 c | 98.52 | |
| KOG0480 | 764 | consensus DNA replication licensing factor, MCM6 c | 98.52 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 98.51 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 98.5 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 98.47 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.45 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 98.42 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 98.41 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 98.39 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 98.39 | |
| PHA02774 | 613 | E1; Provisional | 98.37 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 98.33 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.32 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 98.3 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 98.28 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 98.27 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 98.26 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 98.24 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 98.22 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 98.19 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.16 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 98.15 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 98.13 | |
| PHA02624 | 647 | large T antigen; Provisional | 98.06 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 98.06 | |
| KOG0481 | 729 | consensus DNA replication licensing factor, MCM5 c | 98.05 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 98.02 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.96 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 97.96 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.95 | |
| COG3899 | 849 | Predicted ATPase [General function prediction only | 97.95 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 97.93 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.9 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.88 | |
| PTZ00202 | 550 | tuzin; Provisional | 97.85 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.85 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 97.84 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 97.83 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.81 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.81 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 97.8 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.78 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 97.76 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.75 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 97.74 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 97.73 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.73 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 97.72 | |
| PF05272 | 198 | VirE: Virulence-associated protein E; InterPro: IP | 97.68 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.66 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 97.66 | |
| COG2842 | 297 | Uncharacterized ATPase, putative transposase [Gene | 97.66 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 97.66 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 97.66 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.66 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 97.64 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.63 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.62 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 97.59 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 97.56 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.56 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.54 | |
| KOG1808 | 1856 | consensus AAA ATPase containing von Willebrand fac | 97.53 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.53 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.52 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 97.51 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 97.48 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.48 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.48 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 97.45 | |
| PF00519 | 432 | PPV_E1_C: Papillomavirus helicase; InterPro: IPR00 | 97.45 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.44 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.44 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 97.44 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 97.43 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 97.43 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 97.42 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.4 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.4 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.4 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 97.4 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.39 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 97.36 | |
| KOG0479 | 818 | consensus DNA replication licensing factor, MCM3 c | 97.36 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.36 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 97.35 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.35 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 97.34 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 97.32 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 97.32 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.31 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.3 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.3 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 97.29 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 97.29 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.28 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.27 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 97.24 | |
| PF13479 | 213 | AAA_24: AAA domain | 97.23 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 97.23 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 97.23 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 97.22 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 97.22 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 97.22 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.21 | |
| PF14840 | 125 | DNA_pol3_delt_C: Processivity clamp loader gamma c | 97.21 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 97.21 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 97.21 | |
| PF10923 | 416 | DUF2791: P-loop Domain of unknown function (DUF279 | 97.18 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 97.18 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 97.17 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.16 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.16 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 97.16 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 97.16 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 97.15 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 97.15 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 97.12 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.11 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.11 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.11 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 97.1 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 97.1 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.1 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 97.1 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 97.09 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 97.09 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 97.07 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 97.07 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.06 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 97.05 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 97.05 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.02 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 97.02 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 97.01 | |
| TIGR01613 | 304 | primase_Cterm phage/plasmid primase, P4 family, C- | 97.01 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 97.0 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.0 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 96.99 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 96.99 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.99 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 96.99 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 96.98 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 96.97 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 96.97 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.96 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 96.96 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 96.96 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 96.96 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 96.96 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 96.95 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 96.94 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 96.94 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.94 | |
| TIGR01663 | 526 | PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | 96.94 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 96.93 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 96.93 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 96.92 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 96.92 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.92 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 96.92 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 96.91 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 96.89 | |
| PRK03839 | 180 | putative kinase; Provisional | 96.89 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 96.88 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 96.87 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.86 | |
| PLN02674 | 244 | adenylate kinase | 96.86 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 96.86 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 96.85 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.85 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 96.85 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 96.85 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 96.84 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 96.83 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 96.82 | |
| KOG3928 | 461 | consensus Mitochondrial ribosome small subunit com | 96.81 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 96.8 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 96.8 | |
| PF08303 | 168 | tRNA_lig_kinase: tRNA ligase kinase domain; InterP | 96.79 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 96.79 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.79 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.79 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.79 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 96.78 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 96.78 | |
| COG0529 | 197 | CysC Adenylylsulfate kinase and related kinases [I | 96.78 | |
| PRK06696 | 223 | uridine kinase; Validated | 96.77 | |
| PHA00350 | 399 | putative assembly protein | 96.76 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 96.76 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 96.75 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 96.75 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.75 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 96.75 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 96.74 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.73 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 96.72 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 96.72 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 96.72 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 96.72 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 96.71 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.71 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 96.71 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 96.71 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 96.71 | |
| COG0572 | 218 | Udk Uridine kinase [Nucleotide transport and metab | 96.7 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 96.69 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 96.68 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 96.67 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 96.67 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 96.67 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.66 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.66 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 96.65 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 96.65 | |
| PRK12337 | 475 | 2-phosphoglycerate kinase; Provisional | 96.65 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 96.64 | |
| PRK06217 | 183 | hypothetical protein; Validated | 96.64 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 96.64 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 96.62 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 96.62 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 96.62 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 96.62 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 96.62 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 96.62 |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=364.43 Aligned_cols=323 Identities=51% Similarity=0.773 Sum_probs=297.3
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
.+..|++||||++|++++||+.++..|.+.+.....||+|||||||||||++|.+++++++|++.....+.+.|+++.++
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 34569999999999999999999999999999988999999999999999999999999999999889999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
+..+++.++.|+....... ...++....++|+|+||+|.|+.++|++|+++||+++.+++||++||..++++.++.|||
T Consensus 102 isvvr~Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ccchhhhhcCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 9999999999887654432 233455668899999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC-hhhHhhhhCCCCHHHH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT-SKDLISVSGVIPPEVV 285 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It-~~~v~~~~~~~~~~~~ 285 (382)
+.++|+++..+++...|+.+|.+||+.++++++..|+..|+||+|+|+..||.++.. +..|| .-.++.+.+..++..+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~-gk~It~~~~~e~~~GvVp~~~l 259 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLL-GKRITTSLVNEELAGVVPDEKL 259 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhcc-CcccchHHHHHHHhccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999884 78888 4455556668899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHH
Q 016800 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVAS 365 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~ 365 (382)
.++++....+|+.......+++...|+++..++.++...+.....++......+-..+.+.+.++.-|.+..++|-.|+.
T Consensus 260 ~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~ 339 (346)
T KOG0989|consen 260 LDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLE 339 (346)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998855677788889999999999999999999999999999
Q ss_pred HHHHHH
Q 016800 366 NVIRAV 371 (382)
Q Consensus 366 ~l~~~~ 371 (382)
...+++
T Consensus 340 ~~~ql~ 345 (346)
T KOG0989|consen 340 AEKQLR 345 (346)
T ss_pred HHHHHh
Confidence 888764
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=348.89 Aligned_cols=315 Identities=37% Similarity=0.596 Sum_probs=293.3
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
-..||++||||..+.|++|+++.+..+.-..+.|.+||++|.||||+||||.+.++|++++++.. ...++++|++++++
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-ke~vLELNASdeRG 91 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-KEAVLELNASDERG 91 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-hhHhhhccCccccc
Confidence 34679999999999999999999999999999999999999999999999999999999988764 35689999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
++.+|+.++.|++.....+ .++.++||+||+|.|+..+|++|+++||-++..++|.++||...++.++|.|||
T Consensus 92 IDvVRn~IK~FAQ~kv~lp-------~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRC 164 (333)
T KOG0991|consen 92 IDVVRNKIKMFAQKKVTLP-------PGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRC 164 (333)
T ss_pred cHHHHHHHHHHHHhhccCC-------CCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhh
Confidence 9999999999998765432 348899999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~ 286 (382)
..++|..+++.++...|..+++.|++.++++.++.++..+.||+|+++|.||..... -+.++.+.|.++++..++..+.
T Consensus 165 AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g-~g~Vn~enVfKv~d~PhP~~v~ 243 (333)
T KOG0991|consen 165 AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNG-FGLVNQENVFKVCDEPHPLLVK 243 (333)
T ss_pred HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhcc-ccccchhhhhhccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999987764 3679999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHH
Q 016800 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASN 366 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~ 366 (382)
+++.++..+++++|++.+..++..|++|.+++..+++.++.. .++.....++++.+.-+..++..|++..|+|.+|+.+
T Consensus 244 ~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~-~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~glla~ 322 (333)
T KOG0991|consen 244 KMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM-DVAESLRLEFIKEIGLTHMRILEGVNSLLQLSGLLAK 322 (333)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998874 3455556799999999999999999999999999999
Q ss_pred HHHHH
Q 016800 367 VIRAV 371 (382)
Q Consensus 367 l~~~~ 371 (382)
++..-
T Consensus 323 l~~~~ 327 (333)
T KOG0991|consen 323 LCKVG 327 (333)
T ss_pred HHHhc
Confidence 99763
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=364.15 Aligned_cols=315 Identities=39% Similarity=0.605 Sum_probs=286.2
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
.||.+||||.+|++++||++++..|..++..++.||++|+||||+|||++|++++++++|+.. ...++++++++..+++
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-KEAVLELNASDDRGID 79 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccceeeecccccccHH
Confidence 489999999999999999999999999999999999999999999999999999999988653 3467899999888888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccce
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 208 (382)
.+++.++.+....... ..++++++||||+|.|+.+++++|++++|.++..++||++||...++.++|+|||..
T Consensus 80 ~vr~~i~~~~~~~~~~-------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 80 VVRNKIKMFAQKKVTL-------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHHHHHHhccccC-------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 8888888766442211 112679999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHH
Q 016800 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288 (382)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~ 288 (382)
++|++++.+++..+|..+++++|+.++++++..+++.++||+|.+++.||..... .+.||.++|.++++...+..++.+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~-~~~i~~~~v~~~~~~~~~~~i~~~ 231 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSG-FGFVNQENVFKVCDQPHPLHVKNI 231 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999955432 468999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHH
Q 016800 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVI 368 (382)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~ 368 (382)
++++..+++++++.++++|+..|+++..|+..+.+.+... .++......++..++++++++..|.++.++|++|+.+++
T Consensus 232 i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~ 310 (319)
T PLN03025 232 VRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY-DMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLC 310 (319)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877653 578888889999999999999999999999999999999
Q ss_pred HHHcc
Q 016800 369 RAVCN 373 (382)
Q Consensus 369 ~~~~~ 373 (382)
..-.+
T Consensus 311 ~~~~~ 315 (319)
T PLN03025 311 LVRET 315 (319)
T ss_pred HHHHH
Confidence 77543
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-48 Score=356.87 Aligned_cols=314 Identities=24% Similarity=0.353 Sum_probs=272.8
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
....||.+||||++|+|++||+++++.|..++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 567899999999999999999999999999999999998 899999999999999999999988531
Q ss_pred -----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCce
Q 016800 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (382)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~ 186 (382)
...+++++++....+++.+++........... ++++|+||||+|.|+.+++|+|++.||+|+.++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~----------g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~v 152 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG----------GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHI 152 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhc----------CCCEEEEEechhhcCHHHHHHHHHHhhcCCCce
Confidence 22357788887777888888766654433222 278999999999999999999999999999999
Q ss_pred EEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 016800 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~ 266 (382)
+||++|+.+.++.++|+|||+.+.|.+++.+++..++.+++..+|+.++++++..|++.++|++|+|+++|+.+..+.++
T Consensus 153 iFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~ 232 (484)
T PRK14956 153 VFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDS 232 (484)
T ss_pred EEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987766667
Q ss_pred CCChhhHhhhhCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------
Q 016800 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQLFDVVVET----------------- 328 (382)
Q Consensus 267 ~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~----------------- 328 (382)
.||.+.|.++++..+.+.++++++++..++. .+++.++.+++..|.++..++..+..+++..
T Consensus 233 ~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~ 312 (484)
T PRK14956 233 KLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPK 312 (484)
T ss_pred CcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCH
Confidence 8999999999999999999999999999875 6899999999999999999998887777652
Q ss_pred ----------CCCCHHHHHHHHHHHHHH-----hhHhhcCCChHHHHHHHHHHHHH
Q 016800 329 ----------EDISDEQQARICKCLAEV-----DKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 329 ----------~~~~~~~~~~~~~~~~~~-----~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
..++...+..++..+..+ +..++...++++.+|.++++++.
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 313 EDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 234555555554443222 23456678999999999999985
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-47 Score=358.50 Aligned_cols=312 Identities=27% Similarity=0.405 Sum_probs=282.8
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC----------------
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~---------------- 111 (382)
.+|.+||||++|++++||+++++.|..++..++.+| +|||||+|+|||++|+.+++.++|+..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999999999999 799999999999999999999988642
Q ss_pred --CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 016800 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 189 (382)
.+..++++++.+..+++.+++.+......+.. ++++|+||||+|.|+.+++++|+++||+|+.++.||
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~----------~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSM----------ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCccc----------CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 23467888877767889999887654322211 278999999999999999999999999999999999
Q ss_pred EeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 016800 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It 269 (382)
++|+.+.+++++|+|||..++|.+++.+++..++..+++++|+.++++++..|++.++||+|.++++++++..+.++.||
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It 231 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAIT 231 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777899
Q ss_pred hhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHH
Q 016800 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE-----TEDISDEQQARICKCLA 344 (382)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~~~~~ 344 (382)
.++|.++++......++.+++++..++...++.++.++ .|+++..++..+..+++. ...++...+.+.+..+.
T Consensus 232 ~~~V~~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~ 309 (535)
T PRK08451 232 ESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILS 309 (535)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 579999999999888873 23466777889999999
Q ss_pred HHhhHhhcCCChHHHHHHHHHHHHHHHc
Q 016800 345 EVDKCLVDGADEYLQLLDVASNVIRAVC 372 (382)
Q Consensus 345 ~~~~~l~~g~~~~l~l~~l~~~l~~~~~ 372 (382)
+++..+..|.+.+++++.++++++..+.
T Consensus 310 ~~k~~l~~g~~~~i~l~~~~~~~~~~~~ 337 (535)
T PRK08451 310 SAKSLLKEGADDGFVLLLMLFKMKEALK 337 (535)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998653
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=357.97 Aligned_cols=321 Identities=28% Similarity=0.359 Sum_probs=287.9
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
...+|.+||||++|+|++||+.+++.|.++++.++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 46789999999999999999999999999999999998 899999999999999999999988631
Q ss_pred -----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCce
Q 016800 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (382)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~ 186 (382)
.+.+++++++....+++.++............ ++++||||||+|.|+.++++.|++++|++++.+
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~----------~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSK----------SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhc----------CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 12456777776666778887755544332221 278999999999999999999999999999999
Q ss_pred EEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 016800 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~ 266 (382)
.||++++.+.++.++|+|||..++|++++.+++..|+..+++++|+.+++++++.|+..++||+|.+++++++++.+.++
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~ 232 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPK 232 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877667
Q ss_pred CCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------cCCCCH
Q 016800 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE-------------TEDISD 333 (382)
Q Consensus 267 ~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------~~~~~~ 333 (382)
.|+.++|.++++...++.++++++++..++..+++.++.+|+..|.++..++..+..+++. ...|+.
T Consensus 233 ~It~~~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~ 312 (451)
T PRK06305 233 SLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSS 312 (451)
T ss_pred CcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCH
Confidence 7999999999999999999999999999999999999999999999999887776555443 246899
Q ss_pred HHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHccCCCc
Q 016800 334 EQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEE 377 (382)
Q Consensus 334 ~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~~~~~ 377 (382)
+.+.++++.+.+++++++.|.++++.||.|++++++++...+.+
T Consensus 313 ~~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~~~~~~~~ 356 (451)
T PRK06305 313 EQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIYQRPTLS 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999998877643
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=364.30 Aligned_cols=314 Identities=23% Similarity=0.303 Sum_probs=282.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+...|.+||||++|++++||+++++.|.+++..++++| +||+||+|+|||++++.|++.++|...
T Consensus 2 sY~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred ccHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 46789999999999999999999999999999999999 799999999999999999999998531
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...++++++..+..+++.+++.+......... +++||+||||+|.|+..++|.|+++||+++.+++
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~----------gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVD----------ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhcccc----------CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 11357888888778888998877664433221 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|++..+++++|+|||+.++|++++.+++.++|.+++..+++.++++++..|++.++||+|+++++++....+.++.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~ 231 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANE 231 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888776778
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
|+.+.|..+++....+.++.+++++..+++.+++.++++|...|++...++..|..++.+.
T Consensus 232 It~~~V~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~ 311 (830)
T PRK07003 232 VTETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAAD 311 (830)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999998887776665554431
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++.+.+..++.++.+.+..++...++++.+|..++++...
T Consensus 312 ~~~~a~~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~ 358 (830)
T PRK07003 312 LRRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAF 358 (830)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 467788889999999999999999999999999999999854
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-47 Score=362.56 Aligned_cols=310 Identities=21% Similarity=0.303 Sum_probs=278.6
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC------------------
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE------------------ 110 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~------------------ 110 (382)
.|.+||||++|+|++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 47799999999999999999999999999999999 89999999999999999999999853
Q ss_pred --CCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEE
Q 016800 111 --LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~ 188 (382)
..+.+++++++....+++.+++........... ++++|+||||+|.|+.+++|+|+++||+++.+++|
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~----------~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQ----------SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhc----------CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 123567888887777899988766554333222 27899999999999999999999999999999999
Q ss_pred EEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCC
Q 016800 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267 (382)
Q Consensus 189 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~ 267 (382)
|++|+.+.+++++|+|||+.++|.+++.+++.+||.++++++|+.++++++..+++.++||+|.++++|++++.+. ++.
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~ 231 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTH 231 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876 578
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++...++.++.+++..|.++..++..+..+++..
T Consensus 232 It~~~v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~ 311 (584)
T PRK14952 232 VTYQRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPE 311 (584)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCH
Confidence 9999999999999999999999999999999999999999999999988887776665431
Q ss_pred ----------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHH
Q 016800 329 ----------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 329 ----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
..|+...+.++++.+.+....++.+.++++.+|.++++++.
T Consensus 312 ~~~~~l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 312 DVLERMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 24777888889998888888888889999999999999984
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=360.74 Aligned_cols=314 Identities=20% Similarity=0.276 Sum_probs=281.3
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|+|++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 56789999999999999999999999999999999999 899999999999999999999998632
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...+++++++....+++.+++.+......... ++++|+||||+|.|+.+++|+|+++||+|++++.
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~----------~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTK----------GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhcccc----------CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 22357889988778899999877765443322 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+++.+++++|+|||..++|.+++.+++..++.++++++|+.++++++..|++.++|++|.+++++++++.+.++.
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~ 231 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGK 231 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776678
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++...+..++++++++..++.+.++..+++|+..|.++..++..+..++...
T Consensus 232 It~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (509)
T PRK14958 232 VLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLR 311 (509)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999988877765554431
Q ss_pred ---CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 ---EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 ---~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++.+.+..++..+......++...++++.+|..+++++..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 356 (509)
T PRK14958 312 QLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAF 356 (509)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc
Confidence 345666666677788888889999999999999999999854
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-47 Score=368.21 Aligned_cols=315 Identities=23% Similarity=0.330 Sum_probs=281.1
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|++++||+++++.|.+++..++++| +||+||+|+|||++|+.|++.++|...
T Consensus 2 sY~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 2 SYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 46799999999999999999999999999999999999 699999999999999999999998632
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
....++++++.+..+++.+|+.+..+...... ++++|+||||+|+|+.+++|+|+++||+|+.+++
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~----------gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSR----------GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhc----------CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 12345677776657788888877665433222 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+.+++++|+|||..++|++++.+++..+|.+++..+++.++++++..|+..++|++|.++++++.+..+..+.
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~ 231 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQ 231 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777666678
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
++.+.|.++++......+..+++.+..++...++.++..|+..|.++..++..+..+++..
T Consensus 232 It~~~V~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i 311 (944)
T PRK14949 232 VMLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQI 311 (944)
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHH
Confidence 9999999999999888899999999999999999999999999999999988876665531
Q ss_pred ----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 ----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..++...+..+++.+.++...|+.+.|+++.||.++++++.+.
T Consensus 312 ~~~a~~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~~ 358 (944)
T PRK14949 312 RAFAEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358 (944)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcC
Confidence 2466677888999999999999999999999999999998643
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=353.68 Aligned_cols=310 Identities=21% Similarity=0.334 Sum_probs=280.5
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~----------------- 111 (382)
.|.+||||++|+|++||+++++.|.+.+..++.+| +||+||+|+||||+|+.+++.++|...
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 47899999999999999999999999999999998 999999999999999999999987532
Q ss_pred -CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Q 016800 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 190 (382)
.+.+++++++.+..+++++++.+......+.. ++++|+||||+|.|+.+++|+|+++||+|++++.||+
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~----------~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPIS----------SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhcccc----------CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 34578999998888999999887765544332 2889999999999999999999999999999999999
Q ss_pred eecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCh
Q 016800 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270 (382)
Q Consensus 191 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~ 270 (382)
+++...++.++|+|||+.++|.+++.+++..++.++++++|+.++++++..|++.++|++|.+++++++++.+.++.||.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~ 231 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISE 231 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888789999
Q ss_pred hhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------
Q 016800 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET---------------------- 328 (382)
Q Consensus 271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~---------------------- 328 (382)
++|.++++......++++++++..+|..+++.++++|+..| ++..++..+..+++..
T Consensus 232 e~V~~llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T PRK14964 232 KSVRDLLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIK 310 (491)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999865 7888887776544331
Q ss_pred --CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 --EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 --~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+....++...++++++|.++++++.+
T Consensus 311 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~~ 354 (491)
T PRK14964 311 SLKIGSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYL 354 (491)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc
Confidence 016677888899999999999999999999999999999865
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-47 Score=367.19 Aligned_cols=314 Identities=23% Similarity=0.354 Sum_probs=284.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|....
T Consensus 2 sy~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 45678999999999999999999999999999999999 8999999999999999999999986421
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
..+++++++....+++.+++.+......... ++++|+||||+|.|+..++|+|+++||+|+++++
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~----------~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSR----------SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcccc----------CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 3467888887777888888876654433222 2889999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.++++.++|+|||+.++|.+++.+++..++..+++++|+.++++++..+++.++||+|.++++|+++..+.++.
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~ 231 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDA 231 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888788
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++..+++.++.++...|.++..++..+..+++..
T Consensus 232 It~edV~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~ 311 (576)
T PRK14965 232 VGDDDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAE 311 (576)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHH
Confidence 9999999999999999999999999999999999999999999999988887765555431
Q ss_pred --------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 --------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 --------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..|+...+..+++.+.++++.++.|.++++.||.++++++..
T Consensus 312 ~~~~~~~A~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~ 361 (576)
T PRK14965 312 LAELRAQAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATL 361 (576)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhc
Confidence 357788899999999999999999999999999999999874
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=363.86 Aligned_cols=317 Identities=22% Similarity=0.314 Sum_probs=286.4
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
.....|.+||||++|++++||+++++.|.+++..++.+| +|||||+|+|||++|+.+++.++|...
T Consensus 2 ~~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 2 ENYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred chhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 345789999999999999999999999999999999999 899999999999999999999987431
Q ss_pred ------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCc
Q 016800 112 ------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185 (382)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~ 185 (382)
.+.++.++++.+..+++.++..+......+..+ +++|+||||+|.|+.+++++|+++||+|+.+
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~----------~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIG----------KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccC----------CcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 235677888876677888888776654433322 8899999999999999999999999999999
Q ss_pred eEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 016800 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~ 265 (382)
++||++++...++.++|+|||..++|.+++.+++..|+.+++.++|+.++++++..|+..++||+|.+++++++++.+.+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~ 231 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTG 231 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------
Q 016800 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE------------------ 327 (382)
Q Consensus 266 ~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------------ 327 (382)
+.|+.++|.+.+.....+.++++++++..++..+++..+++|+..|+++..++..+..+++.
T Consensus 232 ~~It~~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~ 311 (614)
T PRK14971 232 GNITYKSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGES 311 (614)
T ss_pred CCccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHH
Confidence 67999999999999999999999999999999999999999999999998888776654433
Q ss_pred --------cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHc
Q 016800 328 --------TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVC 372 (382)
Q Consensus 328 --------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~ 372 (382)
+..++...+.++++.+.+++++++.|.|.+++||.++++++....
T Consensus 312 ~~~~~~~qa~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~~~ 364 (614)
T PRK14971 312 IRQRYLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQ 364 (614)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 146788889999999999999999999999999999999998754
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=356.02 Aligned_cols=314 Identities=22% Similarity=0.296 Sum_probs=281.1
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|+|++||+++++.|.+++.+++++| +||+||+|+|||++++.|++.++|...
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 46789999999999999999999999999999999999 799999999999999999999998320
Q ss_pred ---------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
...+++++++....+++.+++.+......... ++++|+||||+|.|+..++|+|+++||++
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~----------gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTA----------GRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhc----------CCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 12367888888778899999887765443322 27899999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+.++.||++|+++.+++++|+|||+.+.|++++.+++.++|.+++.++|+.++++++..|++.++|++|.++++++.+..
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA 231 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------
Q 016800 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET-------------- 328 (382)
Q Consensus 263 ~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------- 328 (382)
+.++.|+.+.|..+++......+..+++.+..++...++.++..+...|.+...++..+...+...
T Consensus 232 ~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~ 311 (700)
T PRK12323 232 YSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDW 311 (700)
T ss_pred hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhccccc
Confidence 666789999999999999999999999999999999999999999999999766666554443321
Q ss_pred ----------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 ----------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 ----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++.+.+..++..+.+....++...++++.+|..++++..+
T Consensus 312 ~~~~~~~~~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~ 363 (700)
T PRK12323 312 PEADDIRRLAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAF 363 (700)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 247788899999999999999999999999999999999865
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=344.09 Aligned_cols=314 Identities=21% Similarity=0.273 Sum_probs=277.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+..+|.+||||++|++++||+++++.|.+.+..++.+| ++|+||+|+|||++|+++++.+.|....
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 46789999999999999999999999999999999999 7999999999999999999999875311
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
..++.++++.....++.+++.+......+.. ++++|+||||+|.++..++++|++++|+++.++.
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~----------~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSK----------SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCccc----------CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1345666665545667777665544322211 2779999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|++..++.++|+|||..++|+|++.+++.+++..+++.+|+.++++++..+++.++||+|.+++.++.++.+..+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~ 231 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGN 231 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776688
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++...+..++++++++..++..+++.++++++..|.++..++..+..+++..
T Consensus 232 It~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~ 311 (363)
T PRK14961 232 INIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYK 311 (363)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHH
Confidence 9999999999999999999999999999999999999999999999999887776655531
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..+++.+.++...++.+.|+++++|.+++++...
T Consensus 312 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~ 360 (363)
T PRK14961 312 NQIQKIAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINA 360 (363)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhC
Confidence 346677888899999999999999999999999999999853
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=359.87 Aligned_cols=314 Identities=25% Similarity=0.380 Sum_probs=285.1
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~--------------- 110 (382)
+...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|..
T Consensus 2 ~y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 2 MYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred CcHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 45679999999999999999999999999999999999 89999999999999999999999864
Q ss_pred ---CCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
....+++++++....+++.+++.+......+.. ++++|+||||+|.|+..++|+|++++|+|+.+++
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~----------~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~i 151 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSE----------AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCccc----------CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeE
Confidence 224578888887777888888776654433222 2889999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+++++++|+|||+.+.|.+++.+++..++.++++++|+.++++++..++..++|++|.+++.|+++..+.++.
T Consensus 152 fIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~ 231 (559)
T PRK05563 152 FILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGK 231 (559)
T ss_pred EEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877778
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++..+++..+.+++..|.++..++..+..+++..
T Consensus 232 It~~~V~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~ 311 (559)
T PRK05563 232 VTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTEND 311 (559)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHH
Confidence 9999999999999999999999999999999999999999999999998887776555431
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+.++++.+.+++..++.|.++++.+|.++++++..
T Consensus 312 ~~~~~~a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~ 360 (559)
T PRK05563 312 ELFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQ 360 (559)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhh
Confidence 257888999999999999999999999999999999999984
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-46 Score=357.71 Aligned_cols=316 Identities=25% Similarity=0.360 Sum_probs=285.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
....+|.+||||++|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 9 ~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 9 TPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred ccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 456889999999999999999999999999999999998 999999999999999999999998632
Q ss_pred ----------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh
Q 016800 112 ----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (382)
Q Consensus 112 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~ 181 (382)
.+.+++++++....+++++++.+......... ++++||||||+|.|+..++|+|+++||+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~----------a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVS----------ARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhc----------CCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 12356778877777899999877654433332 2789999999999999999999999999
Q ss_pred cCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 182 ~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
|++++.|||+++...+++++|+|||+.++|.+++.+++..||.++++++|+.++++++..|++.++|++|.++++++++.
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli 238 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAI 238 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------
Q 016800 262 RLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------- 328 (382)
Q Consensus 262 ~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------- 328 (382)
.+..+.||.++|.++++......++++++++..++..+++..+.+++..|.++..++..+.++++..
T Consensus 239 ~~g~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~ 318 (598)
T PRK09111 239 AHGAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDP 318 (598)
T ss_pred hhcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 7766789999999999999999999999999999999999999999999999999888776555421
Q ss_pred --------------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 --------------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 --------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..++...+.+++..+.++++.++.+.|+.+.+|.++++++.+-
T Consensus 319 ~~~p~~~~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~~ 375 (598)
T PRK09111 319 SLSEAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAA 375 (598)
T ss_pred cCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhhc
Confidence 3567888999999999999999999999999999999998653
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=358.23 Aligned_cols=315 Identities=22% Similarity=0.327 Sum_probs=283.4
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+.....+||||++|++++||+.+++.|.+++.+++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CcHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 35568899999999999999999999999999999999 999999999999999999999998431
Q ss_pred ------------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHH
Q 016800 112 ------------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (382)
Q Consensus 112 ------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~l 179 (382)
.+.++.++++....+++.+++.+..+......+ +++||||||+|.|+..++++|+++|
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~----------~~KVvIIdEad~Lt~~a~naLLK~L 151 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKG----------RYRVYIIDEVHMLSTAAFNAFLKTL 151 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcC----------CCEEEEEeChhhcCHHHHHHHHHHH
Confidence 123566777766667888988776664433322 7899999999999999999999999
Q ss_pred HhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016800 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (382)
Q Consensus 180 e~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~ 259 (382)
|+|++.++||++++...++.++|+|||+.++|.+++.+++..|+.++++.+|+.+++++++.|++.++||+|.+++++++
T Consensus 152 EePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 152 EEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred hCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc-----CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------
Q 016800 260 AARLF-----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------ 328 (382)
Q Consensus 260 ~~~~~-----~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------ 328 (382)
+..+. ++.||.++|.++++...++.++++++++..++..+++.++++|+..|.++..++..+.++++..
T Consensus 232 L~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~ 311 (620)
T PRK14954 232 VIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNL 311 (620)
T ss_pred HHHhccccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99886 5689999999999999999999999999999999999999999999999998887666655431
Q ss_pred --------------------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 --------------------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 --------------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..|+...+.++++.+.+++++++.+.+.++.+|.|+++++++-
T Consensus 312 ~~~~l~~~~~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 312 RSTRLIERPESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred cccccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 4578888999999999999999999999999999999999864
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=349.09 Aligned_cols=315 Identities=22% Similarity=0.302 Sum_probs=283.1
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
++..||.+||||++|+|++||+++++.|.+.+..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 578999999999999999999999999999999999887 999999999999999999999988531
Q ss_pred ---------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
.+.++.++++....+++.+++.+......+.. ++++|+||||+|.++..+++.|++++|+|
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~----------~~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQ----------GKHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcccc----------CCcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 23467888887777889999877665433322 27899999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+.+++||++++...++.++|+|||+.++|.+++.+++..++..+++++|+.++++++..|++.++||+|.++++|++++.
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred hcC---CCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------
Q 016800 263 LFG---SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET----------- 328 (382)
Q Consensus 263 ~~~---~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~----------- 328 (382)
+.+ +.||.++|.++++...+..++++++++..++..+++..+++++..|.++..++..+.++++..
T Consensus 236 ~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~ 315 (507)
T PRK06645 236 MSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSL 315 (507)
T ss_pred hhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 653 379999999999999999999999999999999999999999999999999887665544321
Q ss_pred --------------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 --------------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 --------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..+++.+.+....++...++++.+|.++++++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~ 371 (507)
T PRK06645 316 PIYESFNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYS 371 (507)
T ss_pred ccchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 245667888999999999999999999999999999999865
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=351.59 Aligned_cols=313 Identities=21% Similarity=0.295 Sum_probs=280.8
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC----------------
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE---------------- 110 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~---------------- 110 (382)
..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+++++.++|..
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 4689999999999999999999999999999999999 79999999999999999999998843
Q ss_pred --CCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEE
Q 016800 111 --LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 111 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~ 188 (382)
....+++++++.+..+++.+++.+......... ++++|+||||+|+|+..++++|+++||+++.++.|
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~----------gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQ----------GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhc----------CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 122367888888777888998877665433322 27899999999999999999999999999999999
Q ss_pred EEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCC
Q 016800 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (382)
Q Consensus 189 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~I 268 (382)
|++|+.+.++..+++|||..++|.+++.+++..+|.++++++|+.++++++..|++.++||+|.++++++++..+.++.|
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~I 231 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAV 231 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877767889
Q ss_pred ChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------
Q 016800 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET-------------------- 328 (382)
Q Consensus 269 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------------- 328 (382)
+.++|..+++......++++++++..++...++..+.++...|.++..++..+...++..
T Consensus 232 T~edV~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~ 311 (702)
T PRK14960 232 HHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAK 311 (702)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHH
Confidence 999999999999999999999999999999999999999999999887776665544331
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+....++...++++.+|.++++++.+
T Consensus 312 ~~~la~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~ 358 (702)
T PRK14960 312 ILQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAF 358 (702)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence 356777888999999999999999999999999999999865
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=358.38 Aligned_cols=318 Identities=26% Similarity=0.382 Sum_probs=282.5
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------- 111 (382)
++..+|.+||||++|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.++|+..
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 567899999999999999999999999999999999999 899999999999999999999998642
Q ss_pred --CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 016800 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 189 (382)
.+..++++++....+++.+++.+......+..+ +++|+||||+|.|+.+++++|+++||+|++.++||
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g----------~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS----------KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC----------CCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 123456677655567888888776655443322 88999999999999999999999999999999999
Q ss_pred EeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 016800 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It 269 (382)
++|+.+++++++|+|||+.++|.+++.+++..+|..++.++|+.++++++..++..++|++|.|++++++++.+..+.|+
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It 232 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKIT 232 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877666799
Q ss_pred hhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------
Q 016800 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET--------------------- 328 (382)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------------- 328 (382)
.++|..+++......++.+++++..++...++.++.+++..|.++..++..+...++..
T Consensus 233 ~e~V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~ 312 (725)
T PRK07133 233 LKNVEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLE 312 (725)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHH
Confidence 99999999999999999999999999999999999999999999998887665554431
Q ss_pred -CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHcc
Q 016800 329 -EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 329 -~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~ 373 (382)
-.++...+..+++.+.++...++.++++++++|.+++++++....
T Consensus 313 ~~~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~~~ 358 (725)
T PRK07133 313 KLKIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSEL 358 (725)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Confidence 124566778889999999999999999999999999999976443
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=368.68 Aligned_cols=312 Identities=22% Similarity=0.326 Sum_probs=278.4
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~----------------- 111 (382)
.|.+||||++|++++||+++++.|.+++..++.+| |||+||+|+|||++|+.|++.++|...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47799999999999999999999999999999999 899999999999999999999998532
Q ss_pred ---CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEE
Q 016800 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~ 188 (382)
.+.+++++++....+++++++........... +++||+||||+|+|+...+|.|+++||+++.+++|
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~----------~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAE----------SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhc----------CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 23567888887777899998865544332221 28899999999999999999999999999999999
Q ss_pred EEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCC
Q 016800 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267 (382)
Q Consensus 189 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~ 267 (382)
||+|++.++++++|+|||+.+.|.+++.+++..||.++++++|+.++++++..+++.++||+|.++++|++++.+. ++.
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~ 233 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEG 233 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765 467
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++...++.++.+|+..|+++..++..++++++..
T Consensus 234 IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~ 313 (824)
T PRK07764 234 VTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPA 313 (824)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCH
Confidence 9999999999999999999999999999999999999999999999877766655544431
Q ss_pred ----------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 ----------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 ----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..|+...+.++++.+.++...++.+.+++|.+|.|+++++.-.
T Consensus 314 d~~~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~~ 366 (824)
T PRK07764 314 DQLDRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLPS 366 (824)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhhc
Confidence 3577788889999999999889999999999999999998543
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=346.56 Aligned_cols=319 Identities=24% Similarity=0.339 Sum_probs=283.5
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~--------------- 111 (382)
...+.+||||++|++++||+.+++.|.+++.+++.+| +||+||+|+|||++|+++++.++|+..
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 5678899999999999999999999999999999999 999999999999999999999998531
Q ss_pred -----------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 016800 112 -----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (382)
Q Consensus 112 -----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le 180 (382)
.+.++.++++....+++.+++....+...+..+ +++|+||||+|.|+.++++.|++++|
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~----------~~kvvIIdea~~l~~~~~~~LLk~LE 152 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKG----------RYRVYIIDEVHMLSIAAFNAFLKTLE 152 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcC----------CeEEEEEeChhhCCHHHHHHHHHHHh
Confidence 123566677766667888887666554333222 78999999999999999999999999
Q ss_pred hcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 016800 181 TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (382)
Q Consensus 181 ~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~ 260 (382)
+|++.+.||++++...++.++|+|||..++|.+++.+++..|+..+++.+|+.+++++++.+++.++||+|.+++.++++
T Consensus 153 ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl 232 (397)
T PRK14955 153 EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQV 232 (397)
T ss_pred cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhc-----CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------
Q 016800 261 ARLF-----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------- 328 (382)
Q Consensus 261 ~~~~-----~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------- 328 (382)
..+. +..||.++|.++++...++.++++++++..++..+++.++.+|+..|.++..++..+..+++..
T Consensus 233 ~~~~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~ 312 (397)
T PRK14955 233 IAFSVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLR 312 (397)
T ss_pred HHhccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 8774 3589999999999999999999999999999999999999999999999988777665554431
Q ss_pred -------------------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHccCCC
Q 016800 329 -------------------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPE 376 (382)
Q Consensus 329 -------------------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~~~~ 376 (382)
..|+.+.+.++++.+.+++++++.|+|+++.+|.|+++++...+..++
T Consensus 313 ~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~~~~~~ 379 (397)
T PRK14955 313 STRLVERPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIGHPAPT 379 (397)
T ss_pred ccccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhCCCccc
Confidence 468889999999999999999999999999999999999988655443
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=356.10 Aligned_cols=314 Identities=22% Similarity=0.306 Sum_probs=277.7
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|++++||+++++.|.+.+..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 sy~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 2 SYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 46789999999999999999999999999999999999 799999999999999999999998531
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...+++++++....+++.+++.+..+...... ++++|+||||+|.|+..++|+|+++||+|+++++
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~----------g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~ 151 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPAR----------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhc----------CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeE
Confidence 12356778877656888898877665443322 2889999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+++.+++++|+|||..++|.+++.+++..+|.+++..+++.++++++..|+..++|++|.++++++.+..+.++.
T Consensus 152 FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~ 231 (647)
T PRK07994 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQ 231 (647)
T ss_pred EEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877665678
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE-------------------- 327 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------------- 327 (382)
|+.++|..+.+....+.+.++++++..++...++.++.++...|.++..++..+...++.
T Consensus 232 it~~~v~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~ 311 (647)
T PRK07994 232 VTTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIEL 311 (647)
T ss_pred cCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHH
Confidence 999999999998888889999999999999999999999999999887766655443322
Q ss_pred -----cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 328 -----TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 328 -----~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
...++...+..+++.+.++...|..+.|+++.+|.+++++...
T Consensus 312 ~l~~la~~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~ 359 (647)
T PRK07994 312 RLRELARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAF 359 (647)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence 1346777778889999999999999999999999999999855
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=354.87 Aligned_cols=314 Identities=22% Similarity=0.316 Sum_probs=283.6
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 46789999999999999999999999999999999999 799999999999999999999998521
Q ss_pred ---------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
...+++++++....+++.+++.+......... ++++|+||||+|.|+..++|+|++++|++
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~----------g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQ----------GRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCccc----------CCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 22367888887778889999887664433322 27899999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+.++.||++|+++.+++.+|+|||..++|++++.+++..+|.+++.++|+.++++++..|++.++||+|.++++++++..
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia 231 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIA 231 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------
Q 016800 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET-------------- 328 (382)
Q Consensus 263 ~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------- 328 (382)
+.++.||.++|.++++......++.+++++..++...++.++++|...|+++..++..+...++..
T Consensus 232 ~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~ 311 (618)
T PRK14951 232 FGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAAT 311 (618)
T ss_pred hcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccC
Confidence 767789999999999999999999999999999999999999999999999999888776665431
Q ss_pred -----------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+....+....++++.+|..++++...
T Consensus 312 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~ 364 (618)
T PRK14951 312 DPEAAEVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAF 364 (618)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence 345777788999999999999999999999999999998854
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=353.98 Aligned_cols=319 Identities=24% Similarity=0.316 Sum_probs=284.8
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+...+.+||||++|++++||+++++.|.+++.+++.+| +||+||+|+|||++|+++++.++|...
T Consensus 2 ~y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 35678999999999999999999999999999999999 999999999999999999999988521
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
.+.+++++++....+++.+++........+.. ++++|+||||+|.|+..++|+|++++|+|+..+.
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~----------~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPAS----------SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhc----------CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 23466777776556778887765544333322 2889999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++++.+.++.++|+|||+.++|.+++.+++..+|.++++.+|+.++++++..|++.++||+|.+++++++++.+.++.
T Consensus 152 fI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~ 231 (563)
T PRK06647 152 FIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSD 231 (563)
T ss_pred EEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887788
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++......++++++++..++..+++.++.+++..|.++..++..+..+++..
T Consensus 232 It~e~V~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~ 311 (563)
T PRK06647 232 ITLEQIRSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAER 311 (563)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHH
Confidence 9999999999999999999999999999999999999999999999999888776665431
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHccCC
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMP 375 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~~~ 375 (382)
..|+...+.+++..+.++++.++.+.++++.+|.++++++..-...+
T Consensus 312 l~k~~~~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~~~~~ 363 (563)
T PRK06647 312 LPEKLREFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKDYVP 363 (563)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccCCC
Confidence 24888899999999999999999999999999999999997654433
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=349.58 Aligned_cols=314 Identities=23% Similarity=0.324 Sum_probs=283.7
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|+...
T Consensus 2 sy~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 2 AYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred cchhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 46789999999999999999999999999999999999 8999999999999999999999886421
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
..+++++++....+++.+++.+......... ++++|+||||+|.|+..++++|+++||+++.++.
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~----------gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTA----------GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhh----------CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 2356778877777888888877654333222 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+.++..+|+|||..+.|.+++.+++..+|.++++++|+.++++++..|++.++||+|.++++|+++..+..+.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~ 231 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGK 231 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776678
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
|+.++|..+++......++++++++..++...++..+++|+..|.++..++..|..+++..
T Consensus 232 It~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~ 311 (709)
T PRK08691 232 VAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDI 311 (709)
T ss_pred cCHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999888776665541
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+....++...++++.+|..++++..+
T Consensus 312 ~~~~a~~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~ 358 (709)
T PRK08691 312 LHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAF 358 (709)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence 467888899999999999999999999999999999999855
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=348.01 Aligned_cols=314 Identities=22% Similarity=0.313 Sum_probs=275.6
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|+|++||+++++.|.+++.+++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 57799999999999999999999999999999999877 999999999999999999999998531
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
.+.+++++++....+++.++.....+...... ++++||||||+|.|+.++++.|+++||+++..++
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~----------g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPME----------GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhc----------CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 23457788877667888888755444333222 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+.++.++|+|||+.++|++++.+++..+|..++..+++.+++++++.|++.++||+|.++++|+++....++.
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~ 231 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876444568
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++....+.++++++++..++...++.++..|+..|.++..++..+..+++..
T Consensus 232 It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~ 311 (624)
T PRK14959 232 LTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPED 311 (624)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHH
Confidence 9999999999999899999999999999999999999999988988877766554444321
Q ss_pred ---------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 ---------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 ---------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..+++.+.++...++.|+|+++++|.++++++.+
T Consensus 312 ~~~~~~~~A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~ 362 (624)
T PRK14959 312 EARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAML 362 (624)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 246667778889999999999999999999999999998743
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=345.62 Aligned_cols=315 Identities=30% Similarity=0.410 Sum_probs=287.4
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~--------------- 110 (382)
...++..||||++|+|++||+++.+.|.+.+..++.+| |+|+||.||||||+|+.+|+.++|..
T Consensus 2 ~yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 2 SYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred chHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 35678899999999999999999999999999999999 99999999999999999999999874
Q ss_pred ---CCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
....+++++++....+++++|+.+......+.. +++||+||||+|.|+..+.|+|++++|+||.++.
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~----------~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~ 151 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSE----------GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVK 151 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCcc----------ccceEEEEecHHhhhHHHHHHHhcccccCccCeE
Confidence 122467888888888999999987775444332 2899999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
|||+|+++.+++.+|+|||+.+.|.+++.+++...|..++.++++.++++++..+++.++|.+|+++++|+.+..+.++.
T Consensus 152 FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~ 231 (515)
T COG2812 152 FILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGE 231 (515)
T ss_pred EEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.+.|..+++......+..+++++..+|...++..+++++..|.++..++..+..+++..
T Consensus 232 It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~ 311 (515)
T COG2812 232 ITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIE 311 (515)
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999888777666431
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 329 -------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..++...+..++..+......++.+.++++.+|.+++++...-
T Consensus 312 ~~~~~~a~~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~ 361 (515)
T COG2812 312 ERTKELASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAA 361 (515)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhc
Confidence 2355666777899999999999999999999999999998764
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=343.63 Aligned_cols=314 Identities=22% Similarity=0.312 Sum_probs=278.9
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 46799999999999999999999999999999999999 899999999999999999999987421
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...+++++++....+++.++..+..+...... ++++|+||||+|+|+.++++.|+++||+|++.+.
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~----------g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQ----------GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhc----------CCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 12366777776667888888877665443322 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|++..+++++|+|||..++|.+++.+++..+|.++++++|+.++++++..|++.++||+|.+++++++++.+.++.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~ 231 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGE 231 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH----------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVV---------------------- 325 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~---------------------- 325 (382)
|+.++|+++++....+.++++++++..++..+++..+..+...|.+...++..+...+
T Consensus 232 It~~~V~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~ 311 (546)
T PRK14957 232 LKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDI 311 (546)
T ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 9999999999998888899999999999999999999999988988877776554110
Q ss_pred -Hh-cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 326 -VE-TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 326 -~~-~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
.. ...++...+..+++.+.++...++.+.|+++++|..++++...
T Consensus 312 i~~~a~~~s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~ 358 (546)
T PRK14957 312 INNILAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF 358 (546)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 00 1357888889999999999999999999999999999999855
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=341.90 Aligned_cols=313 Identities=27% Similarity=0.369 Sum_probs=278.4
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..||.++|||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred CchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 46799999999999999999999999999999999999 799999999999999999999987321
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...++++++++...+++.++.........+.. ++++|+||||+|.|+.+++++|++++++|++.++
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~----------~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIK----------GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCccc----------CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11356677776667788887755443332222 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++++..++++++++|||+.+.|.+++.+++..|+..+++.+|+.++++++..+++.++||+|.++++|++++.+.++.
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~ 231 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGK 231 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777778
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++......++++++++..++...++.++.+|...|.++..++..+..+++..
T Consensus 232 It~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~ 311 (486)
T PRK14953 232 VTIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFY 311 (486)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHH
Confidence 9999999999999999999999999999999999999999999999999988887766541
Q ss_pred --CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 --EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 --~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..+++.+.++...++. .|+++++|.++++++.+
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~ 354 (486)
T PRK14953 312 RKLEKPLEALLYLEDVINKAFSEART-RDPLRAYELAILKLLYV 354 (486)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHhh
Confidence 123456677889999999999999 99999999999999865
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=326.33 Aligned_cols=314 Identities=41% Similarity=0.717 Sum_probs=280.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
....+|.+||||.+|++++|+++++..+..+++.+..|+++|+||+|+|||++++.+++.+.++.+ ...++++++.+..
T Consensus 2 ~~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~~~ 80 (319)
T PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASDER 80 (319)
T ss_pred CccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEecccccc
Confidence 356789999999999999999999999999999999889999999999999999999999977654 3466777777665
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 205 (382)
+.+.++..+..+....+.. ..++++|+|||+|.++.+.++.|+++++.++..+.+|++++...++.+++++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~--------~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 81 GIDVIRNKIKEFARTAPVG--------GAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred chHHHHHHHHHHHhcCCCC--------CCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 5565656565554332111 12578999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHH
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~ 285 (382)
|..++|++++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++.++.. +..||.++|.++++...+..+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~-~~~it~~~v~~~~~~~~~~~i 231 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEEAVYKITGTARPEEI 231 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988775 578999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHH
Q 016800 286 EGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~ 364 (382)
+++++++..+++.+++..+++|+. .|+++..++..+..++.. .+++...+.++++.+.+++++++.|.++.++||.|+
T Consensus 232 ~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~-~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i 310 (319)
T PRK00440 232 REMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWS-LDIPEELKVELIDAIGEADFRITEGANERIQLEALL 310 (319)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999999999984 899999999888766544 479999999999999999999999999999999999
Q ss_pred HHHHHH
Q 016800 365 SNVIRA 370 (382)
Q Consensus 365 ~~l~~~ 370 (382)
++++.+
T Consensus 311 ~~~~~~ 316 (319)
T PRK00440 311 AKLALL 316 (319)
T ss_pred HHHHHh
Confidence 999875
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=333.64 Aligned_cols=310 Identities=27% Similarity=0.390 Sum_probs=275.2
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC---------------
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------- 112 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~--------------- 112 (382)
.||.+||||++|++++||+++++.|.+++..++.+| +||+||||+|||++++.+++.+.|+...
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999999999999999999998 8999999999999999999999876321
Q ss_pred ---CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 016800 113 ---KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 189 (382)
+.+++++++.+..+.+.++..+......+.. ++++||||||+|.++.++++.|++++++++.++.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~----------~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSS----------GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCccc----------CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 3456777776555666666666554322222 278899999999999999999999999999999999
Q ss_pred EeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 016800 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It 269 (382)
++++++.++.++++|||..++|++++.+++..|+..+++++|+.++++++..+++.++||+|.+++.+++++.+.++.||
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it 231 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNIT 231 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777899
Q ss_pred hhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------
Q 016800 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET--------------------- 328 (382)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------------- 328 (382)
.++|+++++......++++++++..++..+++.++.++...|.++..++..+..+++..
T Consensus 232 ~~~v~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l 311 (355)
T TIGR02397 232 YEDVNELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFL 311 (355)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777665544431
Q ss_pred ----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHH
Q 016800 329 ----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVI 368 (382)
Q Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~ 368 (382)
..|+...+..+++.+.++++++++|.|.++++|.|++++|
T Consensus 312 ~~~a~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 312 KELALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 4577888899999999999999999999999999999985
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=335.51 Aligned_cols=309 Identities=27% Similarity=0.357 Sum_probs=276.8
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC-----------------CC
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE-----------------LY 112 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~-----------------~~ 112 (382)
+.+||||++|+|++||+++++.|.+++..++++| +||+||||+||||+|+++++.+.|.+ ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 4599999999999999999999999999999999 69999999999999999999998743 22
Q ss_pred CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 113 KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
+.++.++++.+..+++.+++........... ++++||||||+|.++...++.|++.+++++.++.||+++
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~----------~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t 153 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLR----------GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILAT 153 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhcccc----------CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 3467888887777888888764443332221 278999999999999999999999999999999999999
Q ss_pred cCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhh
Q 016800 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272 (382)
Q Consensus 193 ~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~ 272 (382)
+.+.++.++++|||..++|.+++.+++..||.++++++|+.++++++..|++.++||+|.++++|+++..+ ++.||.++
T Consensus 154 ~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~-~~~It~~~ 232 (504)
T PRK14963 154 TEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQ 232 (504)
T ss_pred CChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765 56899999
Q ss_pred HhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------cCCCCHHHHHHHH
Q 016800 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE------------TEDISDEQQARIC 340 (382)
Q Consensus 273 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------~~~~~~~~~~~~~ 340 (382)
|.++++....+.++++++++..++..+++.++++|+..|+++..++..+.++++. .-.++...+..++
T Consensus 233 V~~~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l 312 (504)
T PRK14963 233 VEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAM 312 (504)
T ss_pred HHHHHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888872 0135677889999
Q ss_pred HHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..+.+.++++..+.+ +..+|..+++++...
T Consensus 313 ~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~ 342 (504)
T PRK14963 313 TALDEQMERFARRSD-ALSLELALLHALLAL 342 (504)
T ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHhhh
Confidence 999999999988886 788999999998655
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=332.27 Aligned_cols=312 Identities=26% Similarity=0.398 Sum_probs=270.7
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC----------------
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~---------------- 111 (382)
..|.+||||++|++++||+++.+.|.+.+..++.+| +||+||||+||||+|+++++.+.|...
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 468999999999999999999999999999999988 899999999999999999999987532
Q ss_pred --CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 016800 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 189 (382)
....+.++++....+++.++.......... .. ++++||||||+|.++.++++.|++++++++++++||
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p-~~---------~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRP-ME---------GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHHHHhhCh-hc---------CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 123578888877778888876444332222 11 278999999999999999999999999999999999
Q ss_pred EeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCC
Q 016800 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It 269 (382)
++++.+.++.++|+|||..+.|.+++.+++..++..+++.+|+.++++++..|++.++||+|.+++.|+.++.+.++.||
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It 231 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKIT 231 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Confidence 99988889999999999999999999999999999999999999999999999999999999999999998877666799
Q ss_pred hhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHhh
Q 016800 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISD-EQQARICKCLAEVDK 348 (382)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 348 (382)
.++|.++++....+.++++++++.++|.++|+.++.+|+..|++|..+++++...+...-.... .....++..+.++-.
T Consensus 232 ~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~ 311 (472)
T PRK14962 232 LETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILR 311 (472)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988876211222 445667777777777
Q ss_pred HhhcCCChHHHHHHHHHHHHHH
Q 016800 349 CLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 349 ~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
.+...-...+..+.++++++.-
T Consensus 312 ~i~~~e~~~~l~~~~~~~~~~~ 333 (472)
T PRK14962 312 EIKFAEEKRLVCKLGSASIATR 333 (472)
T ss_pred HhCCcchHHHHHHHHHHHHHHh
Confidence 7666667778888888777753
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=327.00 Aligned_cols=315 Identities=21% Similarity=0.328 Sum_probs=279.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------CCCceEE
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------YKSRVLE 118 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------~~~~~~~ 118 (382)
....+|.+||||++|++++||+.+.+.+.++++.++.+| ++||||||+|||++++++++.+.|+.. .+..+++
T Consensus 2 ~~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred cchHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 356799999999999999999999999999999998886 999999999999999999999987432 2345566
Q ss_pred eecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcccc
Q 016800 119 LNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 198 (382)
++.....+.+.++..+......+.. +++++|+|||+|.++...++.|++++++++..+.||++++...++
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~----------~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQT----------GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhcccc----------CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 6665555667777766654332222 277899999999999999999999999999999999999999999
Q ss_pred chhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhC
Q 016800 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278 (382)
Q Consensus 199 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~ 278 (382)
.++++|||..++|++++.+++..|+..+++++|+.+++++++.++..++||+|.+++.+++++.+.+..||.++|+.+++
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~ 231 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLN 231 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988766699999999999
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------------CCCC
Q 016800 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET--------------------------EDIS 332 (382)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------------------~~~~ 332 (382)
......++++++++..++..+++..+++++..|.+|..++..+.++++.. +.|+
T Consensus 232 ~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~~s 311 (367)
T PRK14970 232 ILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVS 311 (367)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887776554431 4688
Q ss_pred HHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 333 DEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
...+.+++..+.++++++++|.++.+.+|.++++++..
T Consensus 312 ~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~ 349 (367)
T PRK14970 312 QSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASI 349 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999864
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=338.75 Aligned_cols=314 Identities=24% Similarity=0.321 Sum_probs=279.1
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 2 SYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred CcHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 46789999999999999999999999999999999999 799999999999999999999988531
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...+++++++....+++.+++.+........ . ++++|+||||+|.|+.+++|+|+++||++++++.
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~-~---------~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT-R---------GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc-c---------CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 1235677777666778888877665433222 1 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+++.+++++|+|||..++|++++.+++..++.++++++|+.++++++..|++.++||+|.++++++++..+.++.
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~ 231 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGT 231 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887789
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
|+.++|..+++......++++++++..++...++..+++|...|.+...++..+...++..
T Consensus 232 I~~~~v~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~ 311 (527)
T PRK14969 232 VNESEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDR 311 (527)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHH
Confidence 9999999999998888899999999999999999999999998988887776654443321
Q ss_pred -----CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 -----EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 -----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++.+.+..+++.+.++...+...-++++.+|.+++++...
T Consensus 312 ~~~~a~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~ 358 (527)
T PRK14969 312 LLDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAF 358 (527)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcc
Confidence 357788889999999999999999999999999999999854
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=342.25 Aligned_cols=312 Identities=25% Similarity=0.349 Sum_probs=278.7
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~--------------- 111 (382)
...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 3 VQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred cHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 4568899999999999999999999999999999988 799999999999999999999987532
Q ss_pred ----CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
.+.+++++++....+++.+++.+......... ++++||||||+|.|+.++++.|++++|+++.++.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~----------~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv 152 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPAL----------ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAI 152 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCccc----------CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeE
Confidence 12356777776666788888766543322221 2789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++++..+++.++|+|||..+.|++++..++..++.+++.++|+.++++++..|++.++||+|.++++|++++.+.++.
T Consensus 153 ~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~ 232 (585)
T PRK14950 153 FILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGE 232 (585)
T ss_pred EEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877788
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|..+++......++++++++..++..+++.++.+|+..|.++..++..+.++++..
T Consensus 233 It~e~V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~ 312 (585)
T PRK14950 233 ISLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEK 312 (585)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHH
Confidence 9999999999999999999999999999999999999999999999999887665554431
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHH
Q 016800 329 -------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 329 -------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
+.|+...+..++..+.++++.++.|.+.++.+|.++++++.
T Consensus 313 ~~~~~qa~~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~ 360 (585)
T PRK14950 313 AALQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALL 360 (585)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence 46888999999999999999999998889999999999884
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=339.78 Aligned_cols=313 Identities=24% Similarity=0.365 Sum_probs=277.0
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------- 111 (382)
+..||.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+++++.++|...
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 46899999999999999999999999999999998866 999999999999999999999998531
Q ss_pred ------CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCc
Q 016800 112 ------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185 (382)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~ 185 (382)
.+.+++++++....+++.+++.+......... ++++|+||||+|.|+.+++++|+++||+++..
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~----------~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQ----------ARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhc----------CCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 12356677776667788888887664433222 27899999999999999999999999999999
Q ss_pred eEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 016800 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~ 265 (382)
++||++++++.++.++|+|||+.++|.+++.+++..++.+++.++|+.++++++..+++.++|++|.|++++++.+.+.
T Consensus 152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~- 230 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP- 230 (620)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------
Q 016800 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE------------------ 327 (382)
Q Consensus 266 ~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------------ 327 (382)
+.||.++|..+++......++++++++..++...++.++.+|+..|.++..++..+..+++.
T Consensus 231 ~~It~e~V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~ 310 (620)
T PRK14948 231 GPITPEAVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQ 310 (620)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCH
Confidence 67999999999998888889999999999999999999999999998888766655444332
Q ss_pred ---------cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 328 ---------TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 328 ---------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
.+.++...+..+++.+.++++.++.+.++++.+|.|++++...
T Consensus 311 d~~~~l~~~A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~ 362 (620)
T PRK14948 311 QTWDELCKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPS 362 (620)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhcc
Confidence 1357788899999999999999999999999999999999865
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=329.64 Aligned_cols=271 Identities=24% Similarity=0.427 Sum_probs=246.2
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+..+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|.++.
T Consensus 2 ~~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred cchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 35789999999999999999999999999999999998 9999999999999999999999986432
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
+.+++++++....+++.+++.+..+...+..+ +++|+||||+|.|+.+++++|+++||+|+++++
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~----------~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tv 151 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTF----------KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVV 151 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhC----------CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEE
Confidence 23567777766678888888776655443322 789999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++|+.+.++.++|+|||+.++|.+++.+++..||..++.++|+.++++++..+++.++||+|.|+++++.++.+.+..
T Consensus 152 fIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~ 231 (605)
T PRK05896 152 FIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSE 231 (605)
T ss_pred EEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887767
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (382)
|+.++|.++++......++++++++..++..+++.++.+|+..|.++..++..+..+++.
T Consensus 232 It~e~V~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD 291 (605)
T PRK05896 232 IDIEDINKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLID 291 (605)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999998888889999999999999999999999999999999999988777665
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=317.36 Aligned_cols=306 Identities=33% Similarity=0.556 Sum_probs=263.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc---
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--- 125 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--- 125 (382)
.+|.+||||.+|++++|++.+++.|.+++..++.||++|+||||+|||++|+++++.+.+..+ ...++++++.+..
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-ENNFTEFNVADFFDQG 81 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-ccceEEechhhhhhcc
Confidence 489999999999999999999999999999999899999999999999999999999976542 2345566654321
Q ss_pred -----------------------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 126 -----------------------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 126 -----------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
..+.++..+..+...... .+++++|||||++.++.+.++.|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vlilDe~~~l~~~~~~~L~~~le~~ 152 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPL---------SADYKTILLDNAEALREDAQQALRRIMEQY 152 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCC---------CCCCcEEEEeCcccCCHHHHHHHHHHHHhc
Confidence 011122222222211111 125689999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+..++||++++.+.++.+++++||..+.|.+++.+++..++..++.++|+.+++++++.+++.++||+|.+++.++..+.
T Consensus 153 ~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~ 232 (337)
T PRK12402 153 SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAAL 232 (337)
T ss_pred cCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88899999998888899999999999999999999999999999999999999999999999999999999999998774
Q ss_pred hcCCCCChhhHhhhhCC-CCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 016800 263 LFGSSITSKDLISVSGV-IPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARIC 340 (382)
Q Consensus 263 ~~~~~It~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 340 (382)
. ++.||.++|.+++.. ..+..++++++++..++..+++.++++|+ ..|+++..++..+...+.. .|+...+.+++
T Consensus 233 ~-~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~--~~~~~~l~~~~ 309 (337)
T PRK12402 233 A-AGEITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARS--RYRGDNLARLH 309 (337)
T ss_pred c-CCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HCCHHHHHHHH
Confidence 2 468999999999887 56889999999999999999999999997 7999999999998776555 49999999999
Q ss_pred HHHHHHhhHhhcCCChHHHHHHHHHHH
Q 016800 341 KCLAEVDKCLVDGADEYLQLLDVASNV 367 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~~l~l~~l~~~l 367 (382)
..+.+++++++.|.++.++||.|+.++
T Consensus 310 ~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 310 RLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 999999999999999999999999876
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=278.68 Aligned_cols=315 Identities=27% Similarity=0.437 Sum_probs=259.3
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC------------------
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL------------------ 111 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~------------------ 111 (382)
.|.++|||..++.++++++....+......+..||++||||+|+||.|.+.++.+++++++.
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 59999999999999999999999999999899999999999999999999999999998652
Q ss_pred -----CCCceEEeecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC
Q 016800 112 -----YKSRVLELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184 (382)
Q Consensus 112 -----~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~ 184 (382)
.....++++++|... ...+.+.++..++...-.. .....+++|+|.|+|.++.++|.+|+++||.+..
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~-----~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-----QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-----ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 122446667766432 3346777777775543221 1122789999999999999999999999999999
Q ss_pred ceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 016800 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~ 264 (382)
++++|++||+.+++.++|+|||..++.+.|+++|+...+..+++++|+.++.+.+..|++.|+||+|+|+-+++......
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999776542
Q ss_pred CCCCChhhHhhhhCCCCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 016800 265 GSSITSKDLISVSGVIPPEVVEGLFAVCRSG----DFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340 (382)
Q Consensus 265 ~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 340 (382)
...+.+. .....-..+..+.++.+.+... ..-+.+..+++|+..+.+|.-|+..+...+.. ..+......++
T Consensus 237 -~~~~a~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~--~~d~~~k~~~~ 312 (351)
T KOG2035|consen 237 -EPFTANS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL--KCDTQLKLEVI 312 (351)
T ss_pred -ccccccC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh--cCCchhHHHHH
Confidence 2222111 1111111123334444444442 34567778999999999999999999988877 57777788999
Q ss_pred HHHHHHhhHhhcCCChHHHHHHHHHHHHHHHcc
Q 016800 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~ 373 (382)
+..+++++++..|.....|||+|++++|.+|++
T Consensus 313 ~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~iy~~ 345 (351)
T KOG2035|consen 313 QHAAKYEHRLRLGQKAIFHLEAFVAKFMCIYKK 345 (351)
T ss_pred HHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999865
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=283.50 Aligned_cols=299 Identities=27% Similarity=0.331 Sum_probs=252.4
Q ss_pred chhhhhcCCCCCCcccCcHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.|+.+++||.+++|++||++.+ +-|.+.++.+.+++++|||||||||||+|+.++... +..|..+++.. .
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------~~~f~~~sAv~-~ 84 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------NAAFEALSAVT-S 84 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh------CCceEEecccc-c
Confidence 4999999999999999999999 789999999999999999999999999999999987 56788888876 4
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCccccchhhh
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLA 203 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l~~~l~ 203 (382)
++.+++..++........ +++.|++|||+|++++..|+.|+..+|+. ...+|-+| |+.+.+.++|+
T Consensus 85 gvkdlr~i~e~a~~~~~~----------gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 85 GVKDLREIIEEARKNRLL----------GRRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGATTENPSFELNPALL 152 (436)
T ss_pred cHHHHHHHHHHHHHHHhc----------CCceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEeccCCCCCeeecHHHh
Confidence 788888888776443322 16789999999999999999999999974 33344444 56678999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHH--hCCC-----CCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CCCChhhHh
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNE--EGLN-----LDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLI 274 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~--~~~~-----~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~--~~It~~~v~ 274 (382)
|||+++.|+|++.+++...+.+.+.. .|+. +++++.+.++..++||.|.++|.|+.++.... ..++.+.++
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 99999999999999999999985443 3443 77999999999999999999999998887762 345578887
Q ss_pred hhh----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016800 275 SVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLA 344 (382)
Q Consensus 275 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (382)
+++ +..+++.++.++++++..|.++++.|+.+|+..|.+|..|.+++.....+ +++.+....+.-.++
T Consensus 233 ~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsE--DIGlAdP~Al~~a~a 310 (436)
T COG2256 233 EILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASE--DIGLADPNALQVAVA 310 (436)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh--hccCCChhHHHHHHH
Confidence 777 35678889999999999999999999999999999999999999876655 788877777777777
Q ss_pred HHhhHhhcCCCh-HHHHHHHHHHHH
Q 016800 345 EVDKCLVDGADE-YLQLLDVASNVI 368 (382)
Q Consensus 345 ~~~~~l~~g~~~-~l~l~~l~~~l~ 368 (382)
..+.....|.++ ++.|...++.|+
T Consensus 311 a~da~~~lG~PE~~i~LAqavvyLA 335 (436)
T COG2256 311 ALDAVERLGSPEARIALAQAVVYLA 335 (436)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHH
Confidence 788888889754 777777777666
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=274.13 Aligned_cols=322 Identities=34% Similarity=0.473 Sum_probs=285.2
Q ss_pred ccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 45 ~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.....||.++|+|..+.++++|++++..+.++...+++||+|||||||+|||+...+.++.+.|+......+.++|+++.
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 45678999999999999999999999999999999999999999999999999999999999997655666889999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCC-CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYP-CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
++++.++..+..|........ +. ...+++||+||+|.|+.++||+|++.+|.+..+++|++++|++.++.++++
T Consensus 105 rgid~vr~qi~~fast~~~~~-----fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~q 179 (360)
T KOG0990|consen 105 RGIDPVRQQIHLFASTQQPTT-----YSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQ 179 (360)
T ss_pred cCCcchHHHHHHHHhhcccee-----ccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhh
Confidence 999999999988876542211 11 126799999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC----CCCChhhHhhhhCC
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSGV 279 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~----~~It~~~v~~~~~~ 279 (382)
|||+.++|.|++.++....+.++++.+....+++....+++.+.||+|.++|.||....+.+ .+++.+.+....+.
T Consensus 180 sRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~ 259 (360)
T KOG0990|consen 180 SRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGA 259 (360)
T ss_pred cccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998887652 34666779999999
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHH
Q 016800 280 IPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l 358 (382)
.....+..+++.+....+.++..-+..+. ..|.+..+++..+..++... .+.......++..++++++.+..|.+.++
T Consensus 260 p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~-~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~ 338 (360)
T KOG0990|consen 260 PQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIV-ISKTPVEGHILYQLADIEERLSKGCMQKE 338 (360)
T ss_pred CChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH-hcchHHHHHHHHhHHHHHHHHhcchhHHH
Confidence 98999999999999999988777777775 47788888888887776653 34457788999999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 016800 359 QLLDVASNVIRAVC 372 (382)
Q Consensus 359 ~l~~l~~~l~~~~~ 372 (382)
++.+++..+...++
T Consensus 339 ql~aii~~~~~~~~ 352 (360)
T KOG0990|consen 339 QLKAIIKNFAAELK 352 (360)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=277.88 Aligned_cols=300 Identities=27% Similarity=0.381 Sum_probs=250.4
Q ss_pred ccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 45 ~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.....+|.+||||.+|++++||+++.+.+..+++.++.|| ++|+||+|+|||++++++++.+ ...+.++++.+
T Consensus 5 ~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~------~~~~~~i~~~~ 78 (316)
T PHA02544 5 NPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV------GAEVLFVNGSD 78 (316)
T ss_pred CCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CccceEeccCc
Confidence 4567899999999999999999999999999999999999 5669999999999999999987 23567778776
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC-CHHHHHHHHHHHHhcCCceEEEEeecCccccchhh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 202 (382)
. ..+.+++.+..+....... +++++|||||+|.+ +.++++.|..++++++..+.||+++|...++.++|
T Consensus 79 ~-~~~~i~~~l~~~~~~~~~~---------~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 79 C-RIDFVRNRLTRFASTVSLT---------GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred c-cHHHHHHHHHHHHHhhccc---------CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH
Confidence 3 3555666565554332211 26789999999999 67778889889999999999999999999999999
Q ss_pred hcccceEEecCCCHHHHHHHHH-------HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhh
Q 016800 203 ASRCAKFRFKPLSEEVMSSRVL-------HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275 (382)
Q Consensus 203 ~sr~~~i~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~ 275 (382)
+|||..+.|++|+.++...++. .++..+|+.++++++..+++.+.||+|.+++.++..+. ++.|+.+++..
T Consensus 149 ~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~--~~~i~~~~l~~ 226 (316)
T PHA02544 149 RSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS--TGKIDAGILSE 226 (316)
T ss_pred HhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc--cCCCCHHHHHH
Confidence 9999999999999988775543 44556799999999999999999999999999997654 46788888776
Q ss_pred hhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCC
Q 016800 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGAD 355 (382)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 355 (382)
+. ...++.+++++...+..+.... .. ..+.++..++..+.+.+.. .+....+.++++.+++++..+..|.|
T Consensus 227 ~~----~~~~~~l~~~l~~~d~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (316)
T PHA02544 227 VT----NSDIDDVVEALKAKDFKAVRAL-AP--NYANDYASFVGKLYDELYP--QVTPPSIIRLIEIIGENNQYHGFAAD 297 (316)
T ss_pred hh----HHHHHHHHHHHHcCCHHHHHHH-HH--HhccCHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 54 5667888999999988887773 22 2367888999888777766 46888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 016800 356 EYLQLLDVASNVIRAV 371 (382)
Q Consensus 356 ~~l~l~~l~~~l~~~~ 371 (382)
+.++++.|++++|..+
T Consensus 298 ~~l~le~~l~~~~~~~ 313 (316)
T PHA02544 298 QEIHLLYLLTQLMLEC 313 (316)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999654
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=291.83 Aligned_cols=275 Identities=40% Similarity=0.637 Sum_probs=249.3
Q ss_pred EEEeC--CCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 85 MLFYG--PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 85 lll~G--p~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
.++.| |.+.||||+|+++++.+++.+ +..+++++|+++.++++.+++.++.+....... .++++|+|||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~--------~~~~KVvIID 637 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGEN-WRHNFLELNASDERGINVIREKVKEFARTKPIG--------GASFKIIFLD 637 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC--------CCCCEEEEEE
Confidence 56778 888999999999999997754 456899999999889999999998877543321 1257999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 016800 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL 242 (382)
Q Consensus 163 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 242 (382)
|+|.|+.++|++|+++||+|+.++.||++||++.++.++|+|||+.+.|++++.+++...|.++++++|+.++++++..|
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~I 717 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 717 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 016800 243 SSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQL 321 (382)
Q Consensus 243 ~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l 321 (382)
+..++||+|.|++.||.++.. ...||.++|..+.+......+.++++.+..+++.+++..+++++ ..|+++..++..+
T Consensus 718 a~~s~GDlR~AIn~Lq~~~~~-~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l 796 (846)
T PRK04132 718 LYIAEGDMRRAINILQAAAAL-DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQM 796 (846)
T ss_pred HHHcCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999987754 46799999999999988889999999999999999999999987 7999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 322 FDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
...+... .++......++..++++++++..|.++.++|++|+++++.+
T Consensus 797 ~~~l~~~-~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~ 844 (846)
T PRK04132 797 HREVFNL-PIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844 (846)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9888653 47788888999999999999999999999999999999753
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=267.39 Aligned_cols=282 Identities=17% Similarity=0.280 Sum_probs=219.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--CCCceEEeec--CCCcchHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNA--SDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~--~~~~~~~~~~~ 132 (382)
++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|... .+.++..+.+ ....+++++++
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~ 80 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN 80 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH
Confidence 578999999999999999999999999 799999999999999999999988642 2335555544 23356788888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEec
Q 016800 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212 (382)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 212 (382)
.+..+...+.. +++||+|||++|.|+.+++|+|++++|+||+++.||++|+++++++++|+|||+.++|.
T Consensus 81 ~~~~~~~~p~~----------~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~ 150 (313)
T PRK05564 81 IIEEVNKKPYE----------GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLN 150 (313)
T ss_pred HHHHHhcCccc----------CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCC
Confidence 77655433322 28899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHH
Q 016800 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVC 292 (382)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~ 292 (382)
+++.+++..|+...+. .++++.++.++..++|++..|...+...... . ....++++++++
T Consensus 151 ~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~--------~--------~~~~~~~~~~~l 210 (313)
T PRK05564 151 RLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSLK--------N--------IRNMSLEILKDI 210 (313)
T ss_pred CcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHHH--------H--------HHHHHHHHHHHH
Confidence 9999999999975442 4688889999999999999987665432210 0 023445555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------------------cCCCCHHHHHHHHHHHHHHh
Q 016800 293 RSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE-------------------------TEDISDEQQARICKCLAEVD 347 (382)
Q Consensus 293 ~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~ 347 (382)
..++...++.++..+...+.++..++..+..+++. ...++.+.+..+++.+.+++
T Consensus 211 ~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~l~~~~ 290 (313)
T PRK05564 211 KKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTR 290 (313)
T ss_pred HcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 55555555555555544444444433322222211 13678889999999999999
Q ss_pred hHhhcCCChHHHHHHHHHHHHH
Q 016800 348 KCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 348 ~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
+.++.|+|+++++|.+++++.+
T Consensus 291 ~~l~~n~n~~l~le~lll~~~~ 312 (313)
T PRK05564 291 DNLSSNVNPTLVFDSMLIKMQE 312 (313)
T ss_pred HHHHHcCCccHHHHHHHHhhhc
Confidence 9999999999999999999864
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=271.82 Aligned_cols=297 Identities=27% Similarity=0.333 Sum_probs=241.2
Q ss_pred hhhhhcCCCCCCcccCcHHHHHH---HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRV---LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~---l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
||.++|||.+|++++||++++.. +.+++..+..++++|+||||||||++|+.+++.. +..+..+++... +
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~------~~~~~~l~a~~~-~ 73 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT------DAPFEALSAVTS-G 73 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecccc-c
Confidence 79999999999999999999766 9999999998889999999999999999999987 345677777653 5
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCccccchhhhc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLAS 204 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l~~~l~s 204 (382)
...++..+......... +++.+|+|||+|.++...++.|+..+++. ...+|.++ |....+.++++|
T Consensus 74 ~~~ir~ii~~~~~~~~~----------g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 74 VKDLREVIEEARQRRSA----------GRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHHHHHHHHHHHHhhhc----------CCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCChhhhccHHHhc
Confidence 56666655554322211 16689999999999999999999999873 34445444 334578899999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHh--CC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCC--
Q 016800 205 RCAKFRFKPLSEEVMSSRVLHICNEE--GL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV-- 279 (382)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~-- 279 (382)
||..+.|++++.+++..++.+.+... ++ .+++++++.+++.++||+|.+++.++.++.. +..|+.+++..+++.
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEEALQKRA 220 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHhhhh
Confidence 99999999999999999999987653 44 7899999999999999999999999988765 678999999988863
Q ss_pred --------CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhh
Q 016800 280 --------IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV 351 (382)
Q Consensus 280 --------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 351 (382)
.+.+.+..+++++...|.+.++.|+..|+..|++|..|++++...+.+ +++.+....+.-..+..+..-.
T Consensus 221 ~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e--dig~a~~~~~~~~~~~~~~~~~ 298 (413)
T PRK13342 221 ARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE--DIGLADPNALQVAVAAADAVER 298 (413)
T ss_pred hccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--hhcccCHHHHHHHHHHHHHHHH
Confidence 235567778888889999999999999999999999999999887766 5666655555555666666667
Q ss_pred cCCCh-HHHHHHHHHHHH
Q 016800 352 DGADE-YLQLLDVASNVI 368 (382)
Q Consensus 352 ~g~~~-~l~l~~l~~~l~ 368 (382)
.|.++ ++.|...++-++
T Consensus 299 ~g~pe~~~~l~~~~~~l~ 316 (413)
T PRK13342 299 IGMPEGRIALAQAVIYLA 316 (413)
T ss_pred hCCcHHHHHHHHHHHHHH
Confidence 88754 677776666655
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=280.10 Aligned_cols=302 Identities=22% Similarity=0.285 Sum_probs=236.3
Q ss_pred CCchhhhhcCCCCCCcccCcHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
...||.++|||.+|+|++||++++ ..+.+.+..++.++++|+|||||||||+|+++++... ..+..+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~------~~f~~lna~~ 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR------AHFSSLNAVL 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc------Ccceeehhhh
Confidence 455999999999999999999998 4788899999999999999999999999999999863 3456666653
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCccccchh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEP 201 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l~~~ 201 (382)
.++..+++.+.......... +++.++||||+|.++...++.|+..+++. ...+|.++ |....+.++
T Consensus 88 -~~i~dir~~i~~a~~~l~~~---------~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 88 -AGVKDLRAEVDRAKERLERH---------GKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVNKA 155 (725)
T ss_pred -hhhHHHHHHHHHHHHHhhhc---------CCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhhhH
Confidence 34445555444432211111 15679999999999999999999999863 33344433 333568899
Q ss_pred hhcccceEEecCCCHHHHHHHHHHHHH-------HhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--C--C--CC
Q 016800 202 LASRCAKFRFKPLSEEVMSSRVLHICN-------EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--G--S--SI 268 (382)
Q Consensus 202 l~sr~~~i~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~--~--~--~I 268 (382)
+.|||.++.|++++.+++..++.+.+. .+++.+++++++.|++.++||+|.+++.|+.++... + . .|
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~I 235 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDI 235 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceec
Confidence 999999999999999999999999887 456789999999999999999999999999876533 1 1 27
Q ss_pred ChhhHhhhh----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHH
Q 016800 269 TSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338 (382)
Q Consensus 269 t~~~v~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 338 (382)
|.+.+++.+ +..+++.+.+++++++.+|+++++.|+.+|+..|++|..|++++.....+ +++.+....
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asE--digladp~a 313 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASE--DVGLADPQA 313 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--ccCCCChHH
Confidence 777777654 34678999999999999999999999999999999999999999887765 566654455
Q ss_pred HHHHHHHHhhHhhcCCCh-HHHHHHHHHHHH
Q 016800 339 ICKCLAEVDKCLVDGADE-YLQLLDVASNVI 368 (382)
Q Consensus 339 ~~~~~~~~~~~l~~g~~~-~l~l~~l~~~l~ 368 (382)
+.-.++.++.....|.++ ++.+..+.+-++
T Consensus 314 l~~~~~~~~a~~~~g~pE~~~~laq~~~~la 344 (725)
T PRK13341 314 LVVVEACAAAFERVGLPEGLYPLAQAALYLA 344 (725)
T ss_pred HHHHHHHHHHHHHhCCcchhhHHHHHHHHHH
Confidence 555566666666778644 555555554444
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=246.02 Aligned_cols=297 Identities=22% Similarity=0.299 Sum_probs=244.6
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
++-.+.|+.++.||.+++|.+||++++ ..|+.+++++++|.++||||||||||++|+.++.....+ ...++++.
T Consensus 121 ~~~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~---SyrfvelS 197 (554)
T KOG2028|consen 121 QMLQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVELS 197 (554)
T ss_pred HHhccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEEEe
Confidence 445788999999999999999999998 578999999999999999999999999999999876333 25678887
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCcccc
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRI 198 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l 198 (382)
+... ...++|..++..-...... +++.|++|||++++++..|+.|+..+|... ..+|-.| |+.+.+
T Consensus 198 At~a-~t~dvR~ife~aq~~~~l~---------krkTilFiDEiHRFNksQQD~fLP~VE~G~--I~lIGATTENPSFql 265 (554)
T KOG2028|consen 198 ATNA-KTNDVRDIFEQAQNEKSLT---------KRKTILFIDEIHRFNKSQQDTFLPHVENGD--ITLIGATTENPSFQL 265 (554)
T ss_pred cccc-chHHHHHHHHHHHHHHhhh---------cceeEEEeHHhhhhhhhhhhcccceeccCc--eEEEecccCCCccch
Confidence 7653 5677777776644433332 267899999999999999999999998753 3344443 556789
Q ss_pred chhhhcccceEEecCCCHHHHHHHHHHHHHH----h----C-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-
Q 016800 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNE----E----G-----LNLDAEALSTLSSISQGDLRRAITYLQGAARLF- 264 (382)
Q Consensus 199 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~----~-----~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~- 264 (382)
..++.|||.++.+++++.+.+..+|.+.... + + +.+++..++.++..+.||.|.++|.|+......
T Consensus 266 n~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~ 345 (554)
T KOG2028|consen 266 NAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFC 345 (554)
T ss_pred hHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999884431 1 1 136788999999999999999999999763322
Q ss_pred -------CCCCChhhHhhhh----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 016800 265 -------GSSITSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE 327 (382)
Q Consensus 265 -------~~~It~~~v~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (382)
...++.++|++.+ +..++..+..+.++++.+|.++.+-|+.+|++.|++|.++.+++.++..+
T Consensus 346 tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASE 425 (554)
T KOG2028|consen 346 TRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASE 425 (554)
T ss_pred hhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhc
Confidence 2378999999887 55678899999999999999999999999999999999999999997766
Q ss_pred cCCCCHHHHHHHHHHHHHHhhHhhcCCChH
Q 016800 328 TEDISDEQQARICKCLAEVDKCLVDGADEY 357 (382)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 357 (382)
+++......+-...+.++.....|.++.
T Consensus 426 --DIGlaD~S~L~~Avaa~qav~~vGmPE~ 453 (554)
T KOG2028|consen 426 --DIGLADPSALTQAVAAYQAVHFVGMPEC 453 (554)
T ss_pred --ccCcCCchhhHHHHHHHHHHHHhCCchH
Confidence 7777766667777888888888998664
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=248.42 Aligned_cols=273 Identities=19% Similarity=0.256 Sum_probs=200.3
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------CCCceEEeecC---
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------YKSRVLELNAS--- 122 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------~~~~~~~~~~~--- 122 (382)
.|++++||+++++.|.+.+.+++.+| +||+||+|+||+++|.++++.++|... .+.++..+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 57899999999999999999999988 999999999999999999999998741 22333333321
Q ss_pred --------------------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 123 --------------------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 123 --------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
....++.+++....+...+.. ++++|+|||++|.|+..++|+|+++||+|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~----------~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLE----------APRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCccc----------CCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 012356666654443332222 28899999999999999999999999999
Q ss_pred CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
| ++.||+++++++++++||+|||+.++|++++.+++.++|......++. +.....++..++|+++.|++.++....
T Consensus 152 p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~Gs~~~al~~l~~~~~ 227 (314)
T PRK07399 152 G-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQGSPGAAIANIEQLQS 227 (314)
T ss_pred C-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9 889999999999999999999999999999999999999876543322 122567899999999999998865432
Q ss_pred hcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHH-HHHHHHHHHHhcCCCCHHHHHHHH
Q 016800 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASL-LLSQLFDVVVETEDISDEQQARIC 340 (382)
Q Consensus 263 ~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~-i~~~l~~~~~~~~~~~~~~~~~~~ 340 (382)
. ...+...+..+. ++...++.+-..+. ..+..... ++.-+..++... .....++
T Consensus 228 ~------------------~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~~-----~~~~~~~ 283 (314)
T PRK07399 228 I------------------PPELLQKLEQPP-KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQK-----TKNRQLL 283 (314)
T ss_pred H------------------HHHHHHHHHhcc-cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----hcchHHH
Confidence 1 111122222222 45666666544443 22222222 223332233221 1257889
Q ss_pred HHHHHHhhHhhcCCChHHHHHHHHHHHHH
Q 016800 341 KCLAEVDKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
+.+.++.+.+.+|+|++++++.++++++.
T Consensus 284 ~~l~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 284 KQLEKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 99999999999999999999999999874
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=266.03 Aligned_cols=296 Identities=28% Similarity=0.353 Sum_probs=234.9
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHc---CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET---AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~---~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|++||+|.++++++|+++++..+..|+.. |. .+++||+||||+|||++|+++++.+ +..++++|+++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------~~~~ielnasd~ 75 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------GWEVIELNASDQ 75 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEccccc
Confidence 5899999999999999999999999999874 33 3459999999999999999999997 457888999887
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
...+.++..+.......... +.++++|||||+|.++. ...++|+++++.. ...+|+++|.+..+..
T Consensus 76 r~~~~i~~~i~~~~~~~sl~--------~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLF--------GARRKLILLDEVDGIHGNEDRGGARAILELIKKA--KQPIILTANDPYDPSL 145 (482)
T ss_pred ccHHHHHHHHHHhhccCccc--------CCCCeEEEEecCcccccccchhHHHHHHHHHHcC--CCCEEEeccCccccch
Confidence 66666666555443221111 12678999999999976 5688999999854 3458888998877776
Q ss_pred -hhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCC
Q 016800 201 -PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279 (382)
Q Consensus 201 -~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~ 279 (382)
++++||..+.|++++..++..+|..++..+|+.+++++++.|++.++||+|.+++.|+..+. ....|+.+++..+...
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~-~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE-GYGKLTLEDVKTLGRR 224 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCcHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999999999999999998443 2467999999988877
Q ss_pred CCHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHh---hcCCC
Q 016800 280 IPPEVVEGLFAVCRS-GDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCL---VDGAD 355 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~g~~ 355 (382)
.....++++++.+.. ++...++..+.+ ...++..++..+.+.+... .-+++.+..+++.++.++.-+ ..+.+
T Consensus 225 d~~~~if~~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~~-~~~~~~~~~a~~~ls~ad~~~~~~~~~~~ 300 (482)
T PRK04195 225 DREESIFDALDAVFKARNADQALEASYD---VDEDPDDLIEWIDENIPKE-YDDPEDIARAYDALSRADIFLGRVKRTQN 300 (482)
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhccccc-cCCHHHHHHHHHHHhHHHHHHHHHHhcCC
Confidence 777788899998876 788888776554 4568888888887765441 124467778888887777664 34444
Q ss_pred hHHHHHHHHHHH
Q 016800 356 EYLQLLDVASNV 367 (382)
Q Consensus 356 ~~l~l~~l~~~l 367 (382)
.+|..+...+
T Consensus 301 --~~l~~~~~~~ 310 (482)
T PRK04195 301 --YDLWRYASDL 310 (482)
T ss_pred --cchHHHHHHH
Confidence 4555555554
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=249.22 Aligned_cols=291 Identities=18% Similarity=0.204 Sum_probs=214.2
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC------------------CCCCceEEeecC---C
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE------------------LYKSRVLELNAS---D 123 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~------------------~~~~~~~~~~~~---~ 123 (382)
+...++.+.+.+.+++.+| +||+||+|+||+++|.++++.++|.. ..+.++..+.+. .
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 5678889999999999999 89999999999999999999999853 123455555443 2
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
..+++++|+....+...+..+ ++||+|||++|.|+.+++|+|+|+|||||+++.||++|++++++++||+
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g----------~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLG----------GAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred cCCHHHHHHHHHHHhhccccC----------CceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 367899998777666544332 8899999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHH
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~ 283 (382)
|||+.+.|++++.+++..||.. ...++++.+..++..++|++..|+.+++.........+ .+.+...... .
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~-----~~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~-~~~l~~~~~~---~ 227 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSR-----EVTMSQDALLAALRLSAGAPGAALALLQPERWQQREAL-CQALAYALPS---G 227 (334)
T ss_pred hccccccCCCCCHHHHHHHHHH-----ccCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHH-HHHHHHHhcC---C
Confidence 9999999999999999999953 22367777888999999999999988764221100000 0111111111 1
Q ss_pred HHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCHHHHH-HHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHhhc--CCC
Q 016800 284 VVEGLFAVCRSGDFDLANK----EVNNIIAEGYPASLLL-SQLFDVVVE-TEDISDEQQARICKCLAEVDKCLVD--GAD 355 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~----~l~~l~~~g~~~~~i~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--g~~ 355 (382)
....+...+...+....+. ++++++........++ .+....+.. ...++...+..+++.+.++.+.+.. |+|
T Consensus 228 ~~~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~N~N 307 (334)
T PRK07993 228 DWLSLLPALNHEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVTGVN 307 (334)
T ss_pred CHHHHHHHHcccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1223344444444444444 4555543222111122 222222222 2368899999999999999999995 999
Q ss_pred hHHHHHHHHHHHHHHHccCC
Q 016800 356 EYLQLLDVASNVIRAVCNMP 375 (382)
Q Consensus 356 ~~l~l~~l~~~l~~~~~~~~ 375 (382)
++++++.|++++.++++.++
T Consensus 308 ~~L~le~lll~~~~~~~~~~ 327 (334)
T PRK07993 308 RELLLTDLLLRIEHYLQPGT 327 (334)
T ss_pred HHHHHHHHHHHHHHHHcccC
Confidence 99999999999999988774
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=253.48 Aligned_cols=298 Identities=20% Similarity=0.266 Sum_probs=212.5
Q ss_pred CCCcccCcHHHHHHHHHHHHcCC---------CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETAN---------CPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-lll~Gp~G~GKt~la~~la~~l~~~~~----------------- 111 (382)
.|++++||+++++.|.+++..++ .+| +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 57899999999999999999987 788 999999999999999999999998641
Q ss_pred CCCceEEeecC-CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEE
Q 016800 112 YKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 190 (382)
.+.++..+.+. ...+++++++.+......+.. ++++|+||||+|.|+..++|.|+++||+|++++.||+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~----------~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPST----------GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCccc----------CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 12233333332 235678888766655433222 2789999999999999999999999999999999999
Q ss_pred eecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-------
Q 016800 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL------- 263 (382)
Q Consensus 191 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~------- 263 (382)
+|+++..++++|+|||+.+.|++|+.+++.++|.. +.+ ++++.+..++..++|+++.|+.++......
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~ 227 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLATDEEARARRAEVL 227 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999999999863 224 678889999999999999998775431100
Q ss_pred --cCCCCCh---------------hhHhhhhCCCCHHHHHHHHHHH--------------------------hc------
Q 016800 264 --FGSSITS---------------KDLISVSGVIPPEVVEGLFAVC--------------------------RS------ 294 (382)
Q Consensus 264 --~~~~It~---------------~~v~~~~~~~~~~~~~~~~~~~--------------------------~~------ 294 (382)
...--.. +.+....+.........+.+.+ ..
T Consensus 228 ~~l~~l~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T PRK07940 228 NLALRLARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRA 307 (394)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhh
Confidence 0000010 1111122222222222222221 00
Q ss_pred --CCHHH----HHHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHH
Q 016800 295 --GDFDL----ANKEVNNIIA--EGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVAS 365 (382)
Q Consensus 295 --~~~~~----~~~~l~~l~~--~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~ 365 (382)
..... ...|+++++. .|.+...+.......+.. ...++...+..+++.+.++...+..|+|+++++|.|++
T Consensus 308 ~~~~l~~~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll 387 (394)
T PRK07940 308 SRDALDRALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVA 387 (394)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11222 4556777753 332221221221111111 23688999999999999999999999999999999999
Q ss_pred HHHHHH
Q 016800 366 NVIRAV 371 (382)
Q Consensus 366 ~l~~~~ 371 (382)
++.+.+
T Consensus 388 ~l~~~~ 393 (394)
T PRK07940 388 ALRQAL 393 (394)
T ss_pred HHHHhc
Confidence 998775
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=244.47 Aligned_cols=292 Identities=21% Similarity=0.243 Sum_probs=206.2
Q ss_pred CCCcccC-cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceEE
Q 016800 59 QVKDVAH-QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLE 118 (382)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------------~~~~~~ 118 (382)
.|+.++| |+.+++.|.+.+..++.+| +||+||+|+||+++|+.+++.++|++.. +.++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 5678888 9999999999999999999 7999999999999999999999986521 123333
Q ss_pred eecC-CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 119 LNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 119 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+.+. ...+++++++.+..+...+.. +++||+||||+|.|+.+++|+|+++||+||+++.||++++++.+
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~----------~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVE----------SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcc----------cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 3322 234678888877766544322 27899999999999999999999999999999999999999999
Q ss_pred cchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhh
Q 016800 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277 (382)
Q Consensus 198 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~ 277 (382)
++++|+|||+.++|.+++.+++..++. ++| ++++.+..++..+ |+++.|+.+++..........-...+. .+
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~~~~~~~~~~~~~-~~ 224 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSEDDWFAQARALVIKLYE-AL 224 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhcCchHHHHHHHHHHHHH-HH
Confidence 999999999999999999999988884 345 5666666676664 789999887764332100000001111 11
Q ss_pred CCCCHHHHHHHHHHHhc----CC-HH----HHHHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHH
Q 016800 278 GVIPPEVVEGLFAVCRS----GD-FD----LANKEVNNIIA--EGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAE 345 (382)
Q Consensus 278 ~~~~~~~~~~~~~~~~~----~~-~~----~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 345 (382)
.......+..+.+.+.. ++ .. -...++++++. .|.....+.......+.. +..++...+..+++.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~~~~~~~~ 304 (329)
T PRK08058 225 HEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVAALELILE 304 (329)
T ss_pred HcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11111122222222221 11 11 23345566543 332222222222222222 236899999999999999
Q ss_pred HhhHhhcCCChHHHHHHHHHHHH
Q 016800 346 VDKCLVDGADEYLQLLDVASNVI 368 (382)
Q Consensus 346 ~~~~l~~g~~~~l~l~~l~~~l~ 368 (382)
+...+..|+|+++++|.+++++.
T Consensus 305 ~~~~l~~n~n~~L~le~lll~~~ 327 (329)
T PRK08058 305 AKRRLNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHHHHHcCCHHHHHHHHHHhcc
Confidence 99999999999999999999875
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=236.69 Aligned_cols=285 Identities=17% Similarity=0.157 Sum_probs=205.3
Q ss_pred HHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEeecC---CCcchHH
Q 016800 72 VLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS---DDRGINV 129 (382)
Q Consensus 72 ~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~~~---~~~~~~~ 129 (382)
.+.+++..++.+| +||+||+|+||+++|..+++.++|... .+.++..+.+. ...++++
T Consensus 11 ~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~ 90 (328)
T PRK05707 11 LWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ 90 (328)
T ss_pred HHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence 3444566799999 999999999999999999999998631 12355555443 3467899
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceE
Q 016800 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i 209 (382)
+|+.+..+...+..+ ++||+|||++|.|+.+++|+|++++|+|++++.||++|+.+..+++||+|||+.+
T Consensus 91 iR~l~~~~~~~~~~~----------~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 91 VRELVSFVVQTAQLG----------GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred HHHHHHHHhhccccC----------CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceee
Confidence 998776655443322 7899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHH
Q 016800 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLF 289 (382)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~ 289 (382)
.|.+++.+++..||.... ...+++.+..++..++|++..|+.+++.........+ .+.+..+.... .....+.
T Consensus 161 ~~~~~~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~-~~~l~~~~~~~--~~~~~~~ 233 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHEQGVREQRARV-LDGVKKLLKQQ--QSASQLA 233 (328)
T ss_pred eCCCcCHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHH-HHHHHHHhcCc--ccHHHHH
Confidence 999999999999996532 1246667778899999999999887653221100000 11222222211 1234555
Q ss_pred HHHhcCCHHHHHH----HHHHHHH--cCCCHHHHH-HHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHhh--cCCChHHH
Q 016800 290 AVCRSGDFDLANK----EVNNIIA--EGYPASLLL-SQLFDVVVE-TEDISDEQQARICKCLAEVDKCLV--DGADEYLQ 359 (382)
Q Consensus 290 ~~~~~~~~~~~~~----~l~~l~~--~g~~~~~i~-~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~~l~ 359 (382)
+.+.+.+....+. ++++++. .|.+...++ ......+.. ...++...+..+++.+.++...+. .|+|.++.
T Consensus 234 ~~~~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~NvN~~L~ 313 (328)
T PRK05707 234 ESWLKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANLNRQLL 313 (328)
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccCCCCHHHH
Confidence 5555556555554 4455543 332221121 222222221 236899999999999999999985 79999999
Q ss_pred HHHHHHHHHHHHcc
Q 016800 360 LLDVASNVIRAVCN 373 (382)
Q Consensus 360 l~~l~~~l~~~~~~ 373 (382)
+|.+++++...++.
T Consensus 314 le~lll~~~~~~~~ 327 (328)
T PRK05707 314 LEALLVQWAGLPGA 327 (328)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988764
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-30 Score=230.30 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=205.9
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEeec--CCC
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNA--SDD 124 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~~--~~~ 124 (382)
+...++.+.+.+..++.+| +||+||+|+||+++|..+++.++|... .+.++..+.+ ...
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 5677889999999999999 899999999999999999999998541 2234555544 234
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhc
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 204 (382)
.+++++|+....+...+..+ ++||+|||++|.|+..++|+|+|+||+||+++.||++|+.+.++++||+|
T Consensus 87 I~id~iR~l~~~~~~~~~~g----------~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQG----------GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCHHHHHHHHHHHhhccccC----------CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 67899998766655443332 88999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHH
Q 016800 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284 (382)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~ 284 (382)
||+.+.|.+++.+++.+||.... ..++..+..++..++|++..|+..++........ +.+..+........
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~----~~~~~l~~~~~~~~ 227 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQRK----TFLRQFWLFYRRRS 227 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHHHH----HHHHHHHHHhccCC
Confidence 99999999999999999997543 1344456777889999999998877543221100 11111110000112
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHhh--cCCC
Q 016800 285 VEGLFAVCRSGDFDL----ANKEVNNIIA--EGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEVDKCLV--DGAD 355 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~----~~~~l~~l~~--~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~--~g~~ 355 (382)
..++...+.+.+... ...++++++. .|.+...+..+....+.. +..++...+.++++.+.++..++. .|.|
T Consensus 228 ~~~~~~~~~k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L~~~~~iN 307 (325)
T PRK06871 228 PLELLPLFDKELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQINAVN 307 (325)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccccC
Confidence 233433333333333 3445666654 332222222232222222 236899999999999999999995 4579
Q ss_pred hHHHHHHHHHHHHHHH
Q 016800 356 EYLQLLDVASNVIRAV 371 (382)
Q Consensus 356 ~~l~l~~l~~~l~~~~ 371 (382)
..|.++..++.+.-.+
T Consensus 308 ~~L~l~~~l~~~~~~~ 323 (325)
T PRK06871 308 QELILLDGLTRLVTEV 323 (325)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999876443
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-29 Score=230.09 Aligned_cols=295 Identities=19% Similarity=0.278 Sum_probs=210.3
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC-------C--------------
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE-------L-------------- 111 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~-------~-------------- 111 (382)
.+.|..+++++||+++.+.|...+..++.+| +||+||+|+|||++|+.+++.++|.. .
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 3689999999999999999999999999999 99999999999999999999999821 0
Q ss_pred ---CCCceEEeecC---------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHH
Q 016800 112 ---YKSRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (382)
Q Consensus 112 ---~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~l 179 (382)
.+.++..+..+ ...+++.++.....+..... . ++++|+||||+|.|+..++|+|++++
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~-~---------g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSG-D---------GNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccc-c---------CCceEEEEEchhhcCHHHHHHHHHHH
Confidence 01123333211 12346777765554443322 2 27899999999999999999999999
Q ss_pred HhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016800 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (382)
Q Consensus 180 e~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~ 259 (382)
|+|+.++.||++++.+.+++++|+|||+.++|+|++.+++..+|...+...+ ++++++..+++.++|++|.|+++++.
T Consensus 166 EEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred hcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999987554333 67899999999999999999999875
Q ss_pred HHHhcCCCCChhhHhhhhC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHH---
Q 016800 260 AARLFGSSITSKDLISVSG--VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDE--- 334 (382)
Q Consensus 260 ~~~~~~~~It~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~--- 334 (382)
.... +. +.+...+. .........+.+.+...+....+.|+.+++. +.+....+.... .. +..
T Consensus 244 ~~~~----~~-~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~l~------d~l~~~~~~~~~-~g-~~~~~~ 310 (351)
T PRK09112 244 GGLE----II-ATIDQLLAGSGPDARKAHKLADALSGRESEVQFDFFRDHLL------DRIMAEARRAAE-AG-DLALAE 310 (351)
T ss_pred CcHH----HH-HHHHHHHhhccCCcchHHHHHHHHhCCChHHHHHHHHHHHH------HHHHHHHHhhcc-cC-chhhHH
Confidence 4321 11 11222222 1122234677777777776666676666543 122222221000 00 111
Q ss_pred HHHHHHH-HHHHHhhHhhcCCChHHHHHHHHHHHHHHHcc
Q 016800 335 QQARICK-CLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 335 ~~~~~~~-~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~ 373 (382)
...++.+ ....+...-..|.+++-.+..++.++.+.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~nld~~~~~~~~~~~~~~~~~~ 350 (351)
T PRK09112 311 RLARLWSEIIEEIVEAEAYNLDRKQTVISLLEKLHRAFRT 350 (351)
T ss_pred HHHHHHHHHHHHHhhhhhhCcCHHHHHHHHHHHHHHHHhc
Confidence 2223333 22223333446889999999999999887764
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-29 Score=232.57 Aligned_cols=297 Identities=21% Similarity=0.316 Sum_probs=207.2
Q ss_pred cCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC---------------------
Q 016800 55 YRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY--------------------- 112 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~--------------------- 112 (382)
.+|.++++++||+++++.|.+.+..++++| +||+||+|+||+++|.++++.++|....
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 689999999999999999999999999999 9999999999999999999999985421
Q ss_pred -------CCceEEeecC---------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHH
Q 016800 113 -------KSRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (382)
Q Consensus 113 -------~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll 176 (382)
+.++..+.+. ....++++++....+..... . ++++|+||||+|.|+..++|+|+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~-~---------~~~kVviIDead~m~~~aanaLL 162 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAA-E---------GGWRVVIVDTADEMNANAANALL 162 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcc-c---------CCCEEEEEechHhcCHHHHHHHH
Confidence 1133334321 22456778876655433222 1 27899999999999999999999
Q ss_pred HHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 016800 177 RTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (382)
Q Consensus 177 ~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~ 256 (382)
+++|+|+..+.||++|+.+..+.++++|||+.+.|.+++.+++.++|... +...+++.+..++..++|+++.++.+
T Consensus 163 K~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 163 KVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999653 33345566678899999999999998
Q ss_pred HHHHHHhcCCCCChhhHhhhhC---CCCHHHHHHHHHHHhcCC----HHHHHHH----HHHHHHcCC---CHHHHHHHHH
Q 016800 257 LQGAARLFGSSITSKDLISVSG---VIPPEVVEGLFAVCRSGD----FDLANKE----VNNIIAEGY---PASLLLSQLF 322 (382)
Q Consensus 257 l~~~~~~~~~~It~~~v~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~----l~~l~~~g~---~~~~i~~~l~ 322 (382)
++..... + .+.+...+. ......+..+.+.+...+ +...+.| +.+++..+. ++...+..-.
T Consensus 239 l~~~~~~----~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~~~ 313 (365)
T PRK07471 239 AGGDGLA----L-YRRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGEA 313 (365)
T ss_pred hcccchH----H-HHHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccchhh
Confidence 8643211 1 111212221 122323456666666655 4444444 444443211 1111110000
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHhhHhh-cCCChHHHHHHHHHHHHHH
Q 016800 323 DVVVE-TEDISDEQQARICKCLAEVDKCLV-DGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 323 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~l~l~~l~~~l~~~ 370 (382)
..+.. ........+.++.+.+.+....-. .|.|+++.++.+++.+...
T Consensus 314 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~~ 363 (365)
T PRK07471 314 ALLARLAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 363 (365)
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHh
Confidence 11111 112344555666666655554444 6899999999999998754
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=226.01 Aligned_cols=279 Identities=17% Similarity=0.189 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------CCCceEEe--ecCC----
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL---------------YKSRVLEL--NASD---- 123 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~---------------~~~~~~~~--~~~~---- 123 (382)
+...++.+...+..++.|| +||+||+|+||+++|.++++.++|... .+.++..+ .+.+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 6788899999999999999 999999999999999999999998641 12344444 2221
Q ss_pred ---CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 124 ---DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 124 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
..+++++++....+...+.. +++||+|||++|.|+..++|+|+|+||+|++++.||++++.++++++
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~----------g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQY----------GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred ccccccHHHHHHHHHHHhhCccc----------CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 23577888766655433322 27899999999999999999999999999999999999999999999
Q ss_pred hhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCC
Q 016800 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280 (382)
Q Consensus 201 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~ 280 (382)
||+|||+.+.|.+++.+++..||.. .+ ++++.+..++..++|++..|+..++.........+ ...+..+...
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~~r~~~-~~~l~~~~~~- 230 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLREDGLALRRAV-AQDLEQIASG- 230 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHH-HHHHHHhccC-
Confidence 9999999999999999999999953 34 56666778899999999999887754321110001 1112111111
Q ss_pred CHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHhhcCCCh
Q 016800 281 PPEVVEGLFAVCRSGD-FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDI---SDEQQARICKCLAEVDKCLVDGADE 356 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~~ 356 (382)
......+.+.+.+.+ ......|+.+++...... ..+ ....+..+...+.+....+..|+|+
T Consensus 231 -~~~~~~~a~~~~~~~~~~~l~~~~~Dll~~~~~~--------------~~~~~~~~~~L~~~~~~l~~~~~~~~~~lN~ 295 (319)
T PRK08769 231 -RAGAVDVAQRWTNDGQADQRLRHAADLALAQASA--------------GLTDPSRLHKLATWFDAANRTRDLLRTTVRA 295 (319)
T ss_pred -cccHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC--------------cccChhhHHHHHHHHHHHHHHHHhccCCCCH
Confidence 112345555555432 344555666665421110 012 3456777778888888888999999
Q ss_pred HHHHHHHHHHHHHHHccCCCc
Q 016800 357 YLQLLDVASNVIRAVCNMPEE 377 (382)
Q Consensus 357 ~l~l~~l~~~l~~~~~~~~~~ 377 (382)
+|.+|.|++++..++......
T Consensus 296 ~L~le~lll~~~~~~~~~~~~ 316 (319)
T PRK08769 296 DLAVTELLLAWREGERQPRSR 316 (319)
T ss_pred HHHHHHHHHHHHHHhcccccc
Confidence 999999999999998776443
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=224.68 Aligned_cols=280 Identities=15% Similarity=0.149 Sum_probs=198.0
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------------CCCceEEeecC---
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------------YKSRVLELNAS--- 122 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------------~~~~~~~~~~~--- 122 (382)
+...++.+... .++.|| +||+||+|+||+++|..+++.++|... .+.++..+.+.
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~ 83 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA 83 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 44566666664 568889 999999999999999999999998641 11234434221
Q ss_pred --------------------------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHH
Q 016800 123 --------------------------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (382)
Q Consensus 123 --------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll 176 (382)
...+++++++....+...+.. +++||+|||++|+|+.+++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~----------~~~kV~iI~~ae~m~~~AaNaLL 153 (342)
T PRK06964 84 AEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHR----------GGARVVVLYPAEALNVAAANALL 153 (342)
T ss_pred ccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCcc----------CCceEEEEechhhcCHHHHHHHH
Confidence 134678888766544433222 28899999999999999999999
Q ss_pred HHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 016800 177 RTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (382)
Q Consensus 177 ~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~ 256 (382)
++||+|++++.||++|+.++.+++||+|||+.+.|++++.+++.+||.. .+ +++. ..++..++|++..|+.+
T Consensus 154 KtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~----~~--~~~~--~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 154 KTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA----QG--VADA--DALLAEAGGAPLAALAL 225 (342)
T ss_pred HHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH----cC--CChH--HHHHHHcCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999954 24 3332 33577889999999887
Q ss_pred HHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHH----HHHHHHH--cCCCHHHHHHHHHHHHHh-cC
Q 016800 257 LQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANK----EVNNIIA--EGYPASLLLSQLFDVVVE-TE 329 (382)
Q Consensus 257 l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~--~g~~~~~i~~~l~~~~~~-~~ 329 (382)
++..... . .+.+...+.......+..+.+.+.+.+....+. ++++++. .|.+. .+.......+.. ..
T Consensus 226 ~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~~~-~~~~d~~~~l~~~a~ 299 (342)
T PRK06964 226 ASDENRP----L-RDWTLGQLAAGAACDAFACAETLQKLPVPAVLGWLQRWLYDLLAQRLAGAP-RYFPAQRAALARCAA 299 (342)
T ss_pred HCCChHH----H-HHHHHHHHhccCchhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCc-eecHhHHHHHHHHHH
Confidence 7432110 0 111111222222234455556665555555444 4566543 33222 111111111211 23
Q ss_pred CCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
.++...+..+++.+.++...+..|+|+++++|.+++++.+.+
T Consensus 300 ~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~~~ 341 (342)
T PRK06964 300 AVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYRELF 341 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999997664
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=216.49 Aligned_cols=259 Identities=16% Similarity=0.173 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC----------CCCCceEEeecCC---CcchHHHHH
Q 016800 67 EEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE----------LYKSRVLELNASD---DRGINVVRT 132 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~----------~~~~~~~~~~~~~---~~~~~~~~~ 132 (382)
...++.|.+.+..++.+| +||+||+|+||+++|.++++.++|.. ..+.++..+.+.. ..+++++++
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 356788999999999999 99999999999999999999999963 2345565554432 257888888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEec
Q 016800 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212 (382)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 212 (382)
..+.+...+..+ ++||+|||++|.|+.+++|+|+++||+||+++.||++|++++.+++||+|||+.+.|+
T Consensus 83 l~~~~~~~p~e~----------~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~ 152 (290)
T PRK05917 83 IKKQIWIHPYES----------PYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIP 152 (290)
T ss_pred HHHHHhhCccCC----------CceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEcc
Confidence 776655443322 8899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHH--HHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHH
Q 016800 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLR--RAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290 (382)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr--~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~ 290 (382)
++. ...++++.+..++..++|+++ .+...+... .+...... .+.+..+
T Consensus 153 ~~~---------------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~~---------~~~~~~~~----re~~~~~-- 202 (290)
T PRK05917 153 MEE---------------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKGS---------ADTDKQVL----RDKTKAM-- 202 (290)
T ss_pred chh---------------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhcc---------hHHHHHHH----HHHHHHH--
Confidence 861 123688889999999999996 222222210 01100000 1112222
Q ss_pred HHhcCCHHHHHHHHHHHHH--cCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHH
Q 016800 291 VCRSGDFDLANKEVNNIIA--EGYPAS-LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367 (382)
Q Consensus 291 ~~~~~~~~~~~~~l~~l~~--~g~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l 367 (382)
.+-.+.++++++. .|.+.. .+..+....+.. ++...+..+++.+.++.+.+.+|+|++++++.|++++
T Consensus 203 ------L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~---~~~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l 273 (290)
T PRK05917 203 ------LEVLLQLFRDRFLLALKVPASALAYPDLLKEILT---LPVLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQL 273 (290)
T ss_pred ------HHHHHHHHHHHHHHHcCCchhhhccHHHHHHHHh---cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2334567777653 444443 233444444433 2222377999999999999999999999999999999
Q ss_pred HHHHccC
Q 016800 368 IRAVCNM 374 (382)
Q Consensus 368 ~~~~~~~ 374 (382)
.++++.+
T Consensus 274 ~~~~~~~ 280 (290)
T PRK05917 274 WSLKNRQ 280 (290)
T ss_pred HHHHHHH
Confidence 9998765
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=210.10 Aligned_cols=196 Identities=24% Similarity=0.311 Sum_probs=143.1
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
....++.+++||.+|+|++||++++..+.-+++. ...+|++||||||+||||+|+.+++++ +..+..++
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~------~~~~~~~s 82 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL------GVNFKITS 82 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC------T--EEEEE
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc------CCCeEecc
Confidence 3457899999999999999999999887766542 457889999999999999999999998 35566667
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------------
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------- 183 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------------- 183 (382)
++......++...+..+. +..|++|||+|++++..++.|+..||+..
T Consensus 83 g~~i~k~~dl~~il~~l~----------------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 83 GPAIEKAGDLAAILTNLK----------------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp CCC--SCHHHHHHHHT------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred chhhhhHHHHHHHHHhcC----------------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 654434444444433221 55699999999999999999999999653
Q ss_pred -CceEEEEeecCccccchhhhcccceE-EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 184 -KVTRFFFICNYISRIIEPLASRCAKF-RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 184 -~~~~~Il~~~~~~~l~~~l~sr~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
+...+|-+|+....+..++++|+..+ ++..++.+++..++.+.+...++.++++++.+|+..|.|.+|-|.++|....
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 22346667788888999999999964 8999999999999999999999999999999999999999999999998765
Q ss_pred Hh
Q 016800 262 RL 263 (382)
Q Consensus 262 ~~ 263 (382)
.+
T Consensus 227 D~ 228 (233)
T PF05496_consen 227 DF 228 (233)
T ss_dssp CC
T ss_pred HH
Confidence 44
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-28 Score=216.06 Aligned_cols=281 Identities=12% Similarity=0.146 Sum_probs=199.4
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------CCCceEEeecC---CC
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-----------------YKSRVLELNAS---DD 124 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-----------------~~~~~~~~~~~---~~ 124 (382)
+....+.+.+.+..++.+| +||+||.|+||+++|..+++.++|.+. .+.++..+.+. ..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 5678889999999999999 999999999999999999999998642 22355555543 23
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhc
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 204 (382)
.+++++|+........+.. +++||+|||++|.|+..++|+|+|++||||+++.||++|++++++++||+|
T Consensus 88 I~vdqiR~l~~~~~~~~~~----------~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQL----------NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CCHHHHHHHHHHHhhCccc----------CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 5788888765443333222 288999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHH
Q 016800 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284 (382)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~ 284 (382)
||+.+.|++++.+++.+||.. .|+. ....++..++|++..|+..++.......... .+.+...+.... ..
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~~~~~~~~~~-~~~l~~~l~~~~-~~ 227 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKEGGLEKYHKL-ERQLVDALSGPV-SD 227 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCCCcHHHHHHH-HHHHHHHHhcCc-cc
Confidence 999999999999999999953 3433 2356788999999999888753221100000 112222222221 23
Q ss_pred HHHHHHHHhcCCHHHHHH----HHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhh--cCCCh
Q 016800 285 VEGLFAVCRSGDFDLANK----EVNNIIA--EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV--DGADE 356 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~----~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~ 356 (382)
+..+.+.+...+ ...+. ++.+++. .|....+....+ ..+. .++...+...+..+.++...+. .+.|.
T Consensus 228 ~~~~a~~~~~~~-~~~l~~L~~ll~Dll~~~~g~~~~~~~~~~-~~l~---~~~~~~l~~~~~~l~~~~~~L~~~~~ln~ 302 (319)
T PRK06090 228 QLKCASLIAADP-LTHLSWLWLLLTDAQKVHFGVQNEYYLPGS-AALG---PFTYSGLYVSTAKLERLKEQLQQFSGLNT 302 (319)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHhCCcchhhhHHH-HHHH---hhCHHHHHHHHHHHHHHHHHHHhccccCH
Confidence 344444444333 22333 4455543 332222222222 2221 3577778888999999999987 45799
Q ss_pred HHHHHHHHHHHHHHH
Q 016800 357 YLQLLDVASNVIRAV 371 (382)
Q Consensus 357 ~l~l~~l~~~l~~~~ 371 (382)
.+.++.+++.+.+.+
T Consensus 303 elll~~lll~~~~~~ 317 (319)
T PRK06090 303 ELLIMNWLIESREEL 317 (319)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988765
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=205.32 Aligned_cols=279 Identities=14% Similarity=0.142 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------CCCceEEeec-CCCcchHHHHHHHHHHH
Q 016800 68 EVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------YKSRVLELNA-SDDRGINVVRTKIKTFA 138 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 138 (382)
.+++.|.+.++.++.+| +||+|++|+||+.++..+++.++|... .+.++..++. ....+++++++.+..+.
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 46788999999999999 899999999999999999999988431 1123444542 23356788888777765
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHH
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~ 218 (382)
..+.. .+++||+|||+++.|+..++|+|+++||+||+++.||++++.+.+++++|+|||+.++|.+++.++
T Consensus 83 ~~~~~---------~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 83 FSSFV---------QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred cCCcc---------cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 44322 238899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCC--CHHHHHHHHHHHhcC-
Q 016800 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI--PPEVVEGLFAVCRSG- 295 (382)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~--~~~~~~~~~~~~~~~- 295 (382)
+..+|... + ++++.+..++..++| +++|+.++...... ....+.+.+... ....+..+.+....+
T Consensus 154 l~~~l~~~----~--~~~~~a~~~a~~~~~-~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~l~~~~~~~~~ke 221 (299)
T PRK07132 154 ILAKLLSK----N--KEKEYNWFYAYIFSN-FEQAEKYINKESEN-----LLKKFEEALNKSLKEKYELILFLNKKLTKE 221 (299)
T ss_pred HHHHHHHc----C--CChhHHHHHHHHcCC-HHHHHHHHhcCCHH-----HHHHHHHHHHHhhhhHHHHHHHHHhhcChh
Confidence 99998532 3 677778888888775 99998886532210 001121111111 111222233322221
Q ss_pred C----HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHH
Q 016800 296 D----FDLANKEVNNIIA--EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIR 369 (382)
Q Consensus 296 ~----~~~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~ 369 (382)
+ .+-..-|+++++. .+.+...++.. ...+.... ++... +++.+.++..++.+|+|..++++.|++++.+
T Consensus 222 ~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~-~s~~~---li~~i~~~~~~L~~N~N~~l~~e~lll~l~e 296 (299)
T PRK07132 222 NALFLLKLLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFK-IEFFE---LITIIDEFLNSLETNENFNLQKQAFLVKIYE 296 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCChHhHhhH-HHHHHHHh-cCHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 1222335566654 34454434433 34444422 55544 3888999999999999999999999999998
Q ss_pred HHc
Q 016800 370 AVC 372 (382)
Q Consensus 370 ~~~ 372 (382)
+|.
T Consensus 297 ~~~ 299 (299)
T PRK07132 297 IYE 299 (299)
T ss_pred hhC
Confidence 863
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=200.29 Aligned_cols=262 Identities=17% Similarity=0.193 Sum_probs=186.9
Q ss_pred CcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEeecCC-C
Q 016800 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNASD-D 124 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~~~~-~ 124 (382)
.|+.+++.|.+.+..++.+| +||+|| +||+++|..+++.++|.+. .+.++..+.+.. .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 57889999999999999999 999996 6899999999999998642 123455554432 3
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhc
Q 016800 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 204 (382)
..++++|+....+...+..+ +++|+|||++|+|+..++|+|++++|+|++++.||++|++++.+++||+|
T Consensus 84 I~idqIR~l~~~~~~~p~~~----------~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYEG----------KQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred CCHHHHHHHHHHHhhCcccC----------CcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH
Confidence 56889998777766544332 78999999999999999999999999999999999999999999999999
Q ss_pred ccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHH
Q 016800 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284 (382)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~ 284 (382)
||+.+.|++ +.+++.+++. .+| ++.+....++..+ |++..|+.+++..... + + ...
T Consensus 154 Rcq~i~f~~-~~~~~~~~L~----~~g--~~~~~a~~la~~~-~s~~~A~~l~~~~~~~-------~-~--------~~~ 209 (290)
T PRK07276 154 RTQIFHFPK-NEAYLIQLLE----QKG--LLKTQAELLAKLA-QSTSEAEKLAQNKKFL-------E-L--------IDQ 209 (290)
T ss_pred cceeeeCCC-cHHHHHHHHH----HcC--CChHHHHHHHHHC-CCHHHHHHHhCChhHH-------H-H--------HHH
Confidence 999999976 7777777774 455 4555555566555 5799998887432211 0 0 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHH
Q 016800 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYP---ASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~ 361 (382)
+..+.+.+...+...++.. ..+.....+ ...++..+..++.. .+......+.+....+++..+.+|+|..+++|
T Consensus 210 ~~~~~~~l~~~~~~~~l~~-~~l~~~~~~~e~q~~~l~~l~~~~~~--~~~~~~~~~~L~~~~~~r~~w~~Nv~~~~~le 286 (290)
T PRK07276 210 AERFVTILLKDKDEAYLQV-ARLVQLADEKEEQDQVLTLLTLLLAQ--ERMQVNVRTQLEAVYQARKMWQSNVSFQNALE 286 (290)
T ss_pred HHHHHHHhccChHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHhccCHHHHHH
Confidence 2233333333332332222 233322212 22233333222222 34556678889999999999999999999999
Q ss_pred HHHH
Q 016800 362 DVAS 365 (382)
Q Consensus 362 ~l~~ 365 (382)
.|++
T Consensus 287 ~l~l 290 (290)
T PRK07276 287 YMVL 290 (290)
T ss_pred HHhC
Confidence 9874
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=212.97 Aligned_cols=291 Identities=33% Similarity=0.476 Sum_probs=208.1
Q ss_pred CcccCcHHHHHHHHHHHH-cCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEee
Q 016800 61 KDVAHQEEVVRVLTNTLE-TANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELN 120 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~-~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~ 120 (382)
+++++++.....+..+.. .+++|| +||+||||+|||++|.++++.++|... ...++++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888888888888887 678999 999999999999999999999998653 346899999
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
+++....+...+.++.+.......+ . .++++||||||+|.|+.+++|+|++++|+|+.++.||++||.+.++.+
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~-----~-~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~ 154 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESP-----L-EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILP 154 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCC-----C-CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccc
Confidence 9987764433344444433322111 0 137899999999999999999999999999999999999999999999
Q ss_pred hhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCC
Q 016800 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280 (382)
Q Consensus 201 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~ 280 (382)
+|+|||+.+.|.|++......+.. ++.+..++..+.||+|.+++.++..+.. ......+.......
T Consensus 155 tI~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~---~~~~~~~~~~~~~~ 220 (325)
T COG0470 155 TIRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL---EIGEESIYEALLLA 220 (325)
T ss_pred hhhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh---cccHHHHHHHHHhh
Confidence 999999999999955544444432 5678889999999999999999988764 33333343333322
Q ss_pred CHH-----HHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHhhc
Q 016800 281 PPE-----VVEGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETE--DISDEQQARICKCLAEVDKCLVD 352 (382)
Q Consensus 281 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 352 (382)
... ....++..... +...+...... +...+.........+........ ..........+..+..+...+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (325)
T COG0470 221 LPESLAQLAALELLKLAEN-KFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLD 299 (325)
T ss_pred ChhhcccccHHHHHHHHHh-cchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 222 33344433332 33344444333 23445555554444443333211 13444556778888999999999
Q ss_pred CCChHHHHHHHHHHHHHHHc
Q 016800 353 GADEYLQLLDVASNVIRAVC 372 (382)
Q Consensus 353 g~~~~l~l~~l~~~l~~~~~ 372 (382)
+....+++..++..+.....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (325)
T COG0470 300 GLLALIQLENLLAELLLLQL 319 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888776543
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-25 Score=199.47 Aligned_cols=279 Identities=16% Similarity=0.161 Sum_probs=191.4
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------------CCCceEEeecCC--
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------------YKSRVLELNASD-- 123 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~-------------------~~~~~~~~~~~~-- 123 (382)
+...++.+... .++.+| +||+||+|+|||++|..+++.++|... .+.++.++.+..
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~ 83 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE 83 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence 44555666544 568899 999999999999999999999998542 124566676531
Q ss_pred --------CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 124 --------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 124 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
..+++++|+........+.. ++++|+|||+++.|+..+++.|++++|+++..+.||++|+++
T Consensus 84 ~~~g~~~~~I~id~iR~l~~~~~~~p~~----------~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~ 153 (325)
T PRK08699 84 PENGRKLLQIKIDAVREIIDNVYLTSVR----------GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAA 153 (325)
T ss_pred ccccccCCCcCHHHHHHHHHHHhhCccc----------CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCCh
Confidence 24688899866554433222 278999999999999999999999999998888999999999
Q ss_pred cccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhh
Q 016800 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275 (382)
Q Consensus 196 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~ 275 (382)
..+.++++|||+.+.|++++.+++..||.. .++ +.... . ...++|.+..+... +.... .+.+..
T Consensus 154 ~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~----~~~--~~~~~-~-l~~~~g~p~~~~~~-~~~~~-------r~~~~~ 217 (325)
T PRK08699 154 DKVLPTIKSRCRKMVLPAPSHEEALAYLRE----RGV--AEPEE-R-LAFHSGAPLFDEEP-ELRAL-------RIKLLD 217 (325)
T ss_pred HhChHHHHHHhhhhcCCCCCHHHHHHHHHh----cCC--CcHHH-H-HHHhCCChhhhcCc-hHHHH-------HHHHHH
Confidence 999999999999999999999999999953 344 22221 2 24567777443210 00000 011111
Q ss_pred hhCCCCHHHHHHHHHHHhcC--CHHHH----HHHHHHHHH--cCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Q 016800 276 VSGVIPPEVVEGLFAVCRSG--DFDLA----NKEVNNIIA--EGYPASLLLSQLFDVVVE-TEDISDEQQARICKCLAEV 346 (382)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~l~~l~~--~g~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 346 (382)
.+.......+..+.+.+... +.... ..++++++. .|... .+.......+.. ...++...+..+++.+.++
T Consensus 218 ~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~-~~~~d~~~~l~~~a~~~~~~~L~~~~~~l~~~ 296 (325)
T PRK08699 218 ILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKP-VYYPAYEDRLLQTASGFRPRNVFAAEDMLKQL 296 (325)
T ss_pred HHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCc-ccCHhHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 12222233444555555542 23433 445566654 22221 111111111111 2368999999999999999
Q ss_pred hhHhhcCCChHHHHHHHHHHHHHHHcc
Q 016800 347 DKCLVDGADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 347 ~~~l~~g~~~~l~l~~l~~~l~~~~~~ 373 (382)
...+..|+|+++.+|.+++++.+.++.
T Consensus 297 ~~~l~~n~n~~L~le~lll~~~~~~~~ 323 (325)
T PRK08699 297 APYGFHTLNVKMQIEHLLINYLELKKE 323 (325)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988764
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=203.82 Aligned_cols=209 Identities=21% Similarity=0.241 Sum_probs=165.0
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
....|..+|||.+|++++|+++.++.+..++.. ...+|++|+||||+|||++|+++++.+. ..+...++
T Consensus 11 ~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~------~~~~~~~~ 84 (328)
T PRK00080 11 EEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG------VNIRITSG 84 (328)
T ss_pred ccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC------CCeEEEec
Confidence 446788999999999999999999988877753 2345699999999999999999999983 22333333
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------
Q 016800 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------ 183 (382)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------ 183 (382)
+.......+...+..+ +...+++|||+|.++...++.|+..+++..
T Consensus 85 ~~~~~~~~l~~~l~~l----------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 85 PALEKPGDLAAILTNL----------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred ccccChHHHHHHHHhc----------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 3222222222222211 145699999999999888888988888652
Q ss_pred CceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+...+|.+++....+.+++++||. .+.|++++.+++.+++.+.+...++.++++++..|++.++|++|.+.+.++....
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 235678888888889999999985 7899999999999999999999999999999999999999999999999998765
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
++ ...|+.+.+..+.
T Consensus 229 ~a~~~~~~~I~~~~v~~~l 247 (328)
T PRK00080 229 FAQVKGDGVITKEIADKAL 247 (328)
T ss_pred HHHHcCCCCCCHHHHHHHH
Confidence 54 3568877777665
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-26 Score=185.67 Aligned_cols=141 Identities=38% Similarity=0.617 Sum_probs=112.7
Q ss_pred CcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-----------------CCceEEeecCCC--
Q 016800 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-----------------KSRVLELNASDD-- 124 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~-----------------~~~~~~~~~~~~-- 124 (382)
||+.+++.|.+.+++++.|| +||+||+|+||+++|..+++.++|.... ..++..+++...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 89999999999999999999 8999999999999999999999987643 456777766643
Q ss_pred -cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 125 -RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 125 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
..++++++....+...... +++||+|||++|.|+.+++|+|+++||+|+.++.||++|+++.+++++|+
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~----------~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSE----------GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TT----------SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHHhc----------CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 5788888666554333222 27899999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCC
Q 016800 204 SRCAKFRFKPLS 215 (382)
Q Consensus 204 sr~~~i~~~~~~ 215 (382)
|||+.+.|++++
T Consensus 151 SRc~~i~~~~ls 162 (162)
T PF13177_consen 151 SRCQVIRFRPLS 162 (162)
T ss_dssp TTSEEEEE----
T ss_pred hhceEEecCCCC
Confidence 999999999875
|
... |
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=188.43 Aligned_cols=167 Identities=28% Similarity=0.451 Sum_probs=137.0
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceEEeecC-CCcchHHH
Q 016800 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS-DDRGINVV 130 (382)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~------------------~~~~~~~~~~~-~~~~~~~~ 130 (382)
+.|.+.+..++.+| +||+||+|+|||++++.+++.+.|... ...++..+... ...+++.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 46788889999988 999999999999999999999987521 11122222222 23456777
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEE
Q 016800 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 210 (382)
+..+..+...... ++++||||||+|.++.++++.|++++|++++.+.||++++.+.++.++++|||..+.
T Consensus 82 ~~i~~~~~~~~~~----------~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~ 151 (188)
T TIGR00678 82 RELVEFLSRTPQE----------SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLP 151 (188)
T ss_pred HHHHHHHccCccc----------CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEee
Confidence 7766554433322 278999999999999999999999999999999999999988999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHH
Q 016800 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253 (382)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a 253 (382)
|.+++.+++.+||.+. | ++++++..+++.++||+|.|
T Consensus 152 ~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred CCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 9999999999999664 4 78999999999999999874
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=183.97 Aligned_cols=205 Identities=21% Similarity=0.252 Sum_probs=163.4
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.....||+.|+|++||+++++.+.-+++.. ...|+||+||||.||||+|..+|+++. .++....++...
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg------vn~k~tsGp~le 89 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG------VNLKITSGPALE 89 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc------CCeEeccccccc
Confidence 445678999999999999999988777543 456899999999999999999999983 333333343332
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CceE
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTR 187 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~ 187 (382)
...++...+..+. +..|++|||+|++++...+.|...||++. +...
T Consensus 90 K~gDlaaiLt~Le----------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 KPGDLAAILTNLE----------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ChhhHHHHHhcCC----------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 3333333333211 56799999999999999999999999763 2333
Q ss_pred EEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--
Q 016800 188 FFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-- 264 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-- 264 (382)
+|-+|+....+..++++|+. +.+++.++.+|+..++.+-+...++.++++++..|+..|.|.||-|.++|.....++
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQV 233 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 66677888889999999998 779999999999999999999999999999999999999999999999999887765
Q ss_pred --CCCCChhhHhhhh
Q 016800 265 --GSSITSKDLISVS 277 (382)
Q Consensus 265 --~~~It~~~v~~~~ 277 (382)
+..|+.+.+.+++
T Consensus 234 ~~~~~I~~~ia~~aL 248 (332)
T COG2255 234 KGDGDIDRDIADKAL 248 (332)
T ss_pred hcCCcccHHHHHHHH
Confidence 3556665555444
|
|
| >PRK07452 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=191.26 Aligned_cols=276 Identities=16% Similarity=0.195 Sum_probs=221.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
+|.++|||+...-+...+..+.+.+..+.....++..+++.+.. .+...+......+.. +++++|+|
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~---~~~~~~~~~~t~pff----------~~~rlVvv 67 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDAD---QAIQALNEAMTPPFG----------SGGRLVWL 67 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccch---HHHHHHHHhcCCCCC----------CCceEEEE
Confidence 35699999999999999999998876665555666777765432 223333332222222 27899999
Q ss_pred eCCCCC---CHHHHHHHHHHHHhcCCceEEEEee-cCc---cccchhhhcccceEEecCC---CHHHHHHHHHHHHHHhC
Q 016800 162 DEADSM---TEDAQNALRRTMETYSKVTRFFFIC-NYI---SRIIEPLASRCAKFRFKPL---SEEVMSSRVLHICNEEG 231 (382)
Q Consensus 162 De~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~-~~~---~~l~~~l~sr~~~i~~~~~---~~~~~~~~l~~~~~~~~ 231 (382)
++++.+ +.+..+.|.++++++++.+.+|+++ +.. .+..+.+.+.+.+..|.++ +.+++..|+..++++.|
T Consensus 68 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g 147 (326)
T PRK07452 68 KNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELG 147 (326)
T ss_pred eCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcC
Confidence 998654 5677889999999988888888864 332 2456677777888888765 45779999999999999
Q ss_pred CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 016800 232 LNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII 308 (382)
Q Consensus 232 ~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 308 (382)
+.+++++++.+++.++||++.+.+.+++++.+. +..||.++|++++... ...++++++++..++...|+..+++|+
T Consensus 148 ~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~ 226 (326)
T PRK07452 148 VKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLL 226 (326)
T ss_pred CCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999984 4579999999999876 567889999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHh------------------------------------cCCCCHHHHHHHHHHHHHHhhHhhc
Q 016800 309 AEGYPASLLLSQLFDVVVE------------------------------------TEDISDEQQARICKCLAEVDKCLVD 352 (382)
Q Consensus 309 ~~g~~~~~i~~~l~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~ 352 (382)
..|.+|..++..+.++++. .+.|+.+.+.+++..+.+++++++.
T Consensus 227 ~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D~~iK~ 306 (326)
T PRK07452 227 DANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLEASLKQ 306 (326)
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999988776554333221 1467788899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 016800 353 GADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 353 g~~~~l~l~~l~~~l~~~~ 371 (382)
|.++...+|.++.++|+++
T Consensus 307 g~~~~~~le~~i~~~~~~~ 325 (326)
T PRK07452 307 GANPINALQDKLIELCQLL 325 (326)
T ss_pred CCChHHHHHHHHHHHHHhh
Confidence 9989889999999999986
|
|
| >PRK05907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-22 Score=182.51 Aligned_cols=276 Identities=12% Similarity=0.094 Sum_probs=220.6
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
...+.+.+++|+ |.+++||..- ......+.+.+..++. ..+++.+. ..+.+.+.... .+..+
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~-----~~fdg~~~-~~~~ii~~aet---lPfFa----- 68 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK-----SEFDGQGL-LQQELLSWTEH---FGLFA----- 68 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc-----ceecCCCC-CHHHHHHHHhc---CCccc-----
Confidence 456667788888 8899999887 6666777676654432 23455443 33444333333 22222
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEE-Eeec--CccccchhhhcccceE----EecCCCHHHHHHH
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF-FICN--YISRIIEPLASRCAKF----RFKPLSEEVMSSR 222 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I-l~~~--~~~~l~~~l~sr~~~i----~~~~~~~~~~~~~ 222 (382)
.+++|++.+.+.++....+.|.+++++|++.+.+| ++.. ...++.+.+.+ +..+ .|+++.+.++..|
T Consensus 69 -----erRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~W 142 (311)
T PRK05907 69 -----SQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSS-ALCLSLFGEWFADRDKRIAQL 142 (311)
T ss_pred -----CeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhh-cceeccccccCCCCHHHHHHH
Confidence 78899999888887767889999999999975555 4442 11223444543 4444 8999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc--CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHH
Q 016800 223 VLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF--GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDL 299 (382)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~--~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
+..++++.|..+++++++.++..+ +||+..+.+.+++++.+. +..||.++|++++....+.++|++++++..++..+
T Consensus 143 i~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~ 222 (311)
T PRK05907 143 LIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVE 222 (311)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHH
Confidence 999999999999999999999999 699999999999999985 46799999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHhc------------CC----CCHHHHHHHHHHHHHHhhHhhcC-CChHHHHH
Q 016800 300 ANKEVNNIIAE-GYPASLLLSQLFDVVVET------------ED----ISDEQQARICKCLAEVDKCLVDG-ADEYLQLL 361 (382)
Q Consensus 300 ~~~~l~~l~~~-g~~~~~i~~~l~~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~l~~g-~~~~l~l~ 361 (382)
|++.+++|+.. |.+|..++..+.+++... .. |+...+.+++..+.++|+++++| .++.+.+|
T Consensus 223 Al~il~~Ll~~~ge~p~~ILall~rQfl~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D~~iKtg~~d~~~~lE 302 (311)
T PRK05907 223 GHSLLRSLLSDMGEDPLGIIAFLRSQCLYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAESLIKNNVQDPILAVE 302 (311)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 99999999999 999999998887776210 12 78899999999999999999998 59999999
Q ss_pred HHHHHHHH
Q 016800 362 DVASNVIR 369 (382)
Q Consensus 362 ~l~~~l~~ 369 (382)
.|+++++.
T Consensus 303 lli~~~~~ 310 (311)
T PRK05907 303 TLVIRMTN 310 (311)
T ss_pred HHHHHHhc
Confidence 99999885
|
|
| >PRK05629 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-23 Score=187.56 Aligned_cols=273 Identities=12% Similarity=0.079 Sum_probs=226.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
|.+||||+...-.......+.+.+..++....++..+++.+.. ...+.+ ....+... ++++|+++
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l~~----~~t~slF~----------~~rlV~v~ 71 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGELLD----ALSPSLFG----------EDRVIVLT 71 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHHHH----hhCcCccC----------CceEEEEe
Confidence 3489999988777777777777776655556788888877542 333322 22222222 78999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc---cccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 016800 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYI---SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239 (382)
Q Consensus 163 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~---~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (382)
+++.......+.++.+++++++.+.+|+++... .++.+.++..+..++|.++...++..|+..++++.|+.++++++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~ 151 (318)
T PRK05629 72 NMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVV 151 (318)
T ss_pred ChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 988776667788999999998888888877533 23556788888899999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHH
Q 016800 240 STLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319 (382)
Q Consensus 240 ~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~ 319 (382)
+.+++.+++|+..+.+.+++++.+.++.||.++|++++....+..++++++++..++...++..+++|+..|.+|..++.
T Consensus 152 ~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~ 231 (318)
T PRK05629 152 HALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVALAA 231 (318)
T ss_pred HHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 99999999999999999999988767889999999999999999999999999999999999999999999999998866
Q ss_pred HHHHHHHh---------------------------------cCCCCHHHHHHHHHHHHHHhhHhhcC-CChHHHHHHHHH
Q 016800 320 QLFDVVVE---------------------------------TEDISDEQQARICKCLAEVDKCLVDG-ADEYLQLLDVAS 365 (382)
Q Consensus 320 ~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~l~l~~l~~ 365 (382)
.+.++++. .+.|+...+.+++..+.++|+.++.| .++.+.||.++.
T Consensus 232 ~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~ 311 (318)
T PRK05629 232 ALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQGGDPEFAIESAVR 311 (318)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 55433211 05789999999999999999999986 599999999999
Q ss_pred HHHHH
Q 016800 366 NVIRA 370 (382)
Q Consensus 366 ~l~~~ 370 (382)
++.++
T Consensus 312 ~~~~~ 316 (318)
T PRK05629 312 RVAEL 316 (318)
T ss_pred HHHhh
Confidence 99874
|
|
| >PRK07914 hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=186.32 Aligned_cols=275 Identities=13% Similarity=0.089 Sum_probs=229.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
|.++|||+.-.........+.+.+.. ++....++..+++.+.. ... +......+... ++++|++
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~-~~~----i~~~~t~plF~----------~rRlV~v 70 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVS-TYE----LAELLSPSLFA----------EERVVVL 70 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCC-HHH----HHHhcCCCCCC----------CceEEEE
Confidence 45999999999999999999887765 35556677888876542 222 22322222222 8899999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc---cccchhhhccc-ceEEecCC-CHHHHHHHHHHHHHHhCCCCCH
Q 016800 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYI---SRIIEPLASRC-AKFRFKPL-SEEVMSSRVLHICNEEGLNLDA 236 (382)
Q Consensus 162 De~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~---~~l~~~l~sr~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 236 (382)
+++..+..+..+.|..+++++++.+.+|++.+.. .++.+++.+.. .++.|.++ +..++..|+...+++.|+.+++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~ 150 (320)
T PRK07914 71 EAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDD 150 (320)
T ss_pred eChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 9988777777789999999999988888875432 23456777665 48899998 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Q 016800 237 EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASL 316 (382)
Q Consensus 237 ~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~ 316 (382)
++++.+++.++||+..+.+.+++++.+.++.||.++|.+++....+..++++++++..++..+++..+++|+..|.+|..
T Consensus 151 ~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~ 230 (320)
T PRK07914 151 DTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVV 230 (320)
T ss_pred HHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHH
Confidence 99999999999999999999999987667889999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhc-------------------------------CCCCHHHHHHHHHHHHHHhhHhhcC-CChHHHHHHHH
Q 016800 317 LLSQLFDVVVET-------------------------------EDISDEQQARICKCLAEVDKCLVDG-ADEYLQLLDVA 364 (382)
Q Consensus 317 i~~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~l~l~~l~ 364 (382)
++..+.++++.. +.|+...+.+++..+.++|.++|.| .++.+.||.++
T Consensus 231 il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i 310 (320)
T PRK07914 231 LADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAV 310 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 877665554431 5899999999999999999999987 69999999999
Q ss_pred HHHHHHHc
Q 016800 365 SNVIRAVC 372 (382)
Q Consensus 365 ~~l~~~~~ 372 (382)
++++++..
T Consensus 311 ~~~~~~~~ 318 (320)
T PRK07914 311 RRVAELVA 318 (320)
T ss_pred HHHHHHhc
Confidence 99998753
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=204.45 Aligned_cols=233 Identities=25% Similarity=0.335 Sum_probs=173.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceEEeecC
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNAS 122 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~----~~~~~~~~~~~~~ 122 (382)
=..||.+||||.+|++++|+++.++.+...+......|++|+||||||||++|+++.+..... ...+..++++++.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 367999999999999999999999999988877777789999999999999999998764321 1113567888875
Q ss_pred CCcc-hHHHHHH-HHH----HHHhh--hc-CC---CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------
Q 016800 123 DDRG-INVVRTK-IKT----FAAVA--VG-SG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------- 183 (382)
Q Consensus 123 ~~~~-~~~~~~~-l~~----~~~~~--~~-~~---~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------- 183 (382)
.... ...+.+. +.. ..... .+ .+ ...+.+......+++|||++.|++..|+.|++.||+..
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~ 210 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAY 210 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccc
Confidence 3111 0111111 100 00000 00 00 01112223456799999999999999999999998631
Q ss_pred ---------------------CceEEEEee-cCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 016800 184 ---------------------KVTRFFFIC-NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241 (382)
Q Consensus 184 ---------------------~~~~~Il~~-~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (382)
..+++|++| +.+..+.+++++||..+.|++++.+++..++++.+++.++.+++++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~ 290 (531)
T TIGR02902 211 YNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALEL 290 (531)
T ss_pred ccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 234555554 5678899999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCCC
Q 016800 242 LSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSGVI 280 (382)
Q Consensus 242 l~~~s~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~ 280 (382)
|..++. |.|.+.++++.++..+ ...|+.+++..++...
T Consensus 291 I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 291 IVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 888765 8999999999887654 2469999999988644
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=190.74 Aligned_cols=199 Identities=20% Similarity=0.233 Sum_probs=155.6
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
++|++++|+++.++.+..++.. +..+|++|+||||+|||++++++++.+.. .+....+........+..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------NLKITSGPALEKPGDLAA 74 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeccchhcCchhHHH
Confidence 4789999999999999988863 44567999999999999999999998732 233333322222223332
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CceEEEEeecC
Q 016800 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRFFFICNY 194 (382)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~~Il~~~~ 194 (382)
.+... +...+++|||++.++.+.++.|+..+++.. +...+|.+++.
T Consensus 75 ~l~~~----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 75 ILTNL----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHHhc----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 22221 144699999999999999999998887433 23567777888
Q ss_pred ccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CCCCC
Q 016800 195 ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSIT 269 (382)
Q Consensus 195 ~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~----~~~It 269 (382)
+..+.+++++||. .+.|++++.+++.+++.+.+...++.++++++..|++.++|++|.+.+.+..++..+ ...|+
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it 218 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIIN 218 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcC
Confidence 8889999999996 679999999999999999999999999999999999999999999999998876543 34588
Q ss_pred hhhHhhhhC
Q 016800 270 SKDLISVSG 278 (382)
Q Consensus 270 ~~~v~~~~~ 278 (382)
.+.+.....
T Consensus 219 ~~~v~~~l~ 227 (305)
T TIGR00635 219 RDIALKALE 227 (305)
T ss_pred HHHHHHHHH
Confidence 887776653
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=193.74 Aligned_cols=216 Identities=30% Similarity=0.437 Sum_probs=177.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcC--------------------------------CCCc--EEEeCCCCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA--------------------------------NCPH--MLFYGPPGTG 94 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~--------------------------------~~~~--lll~Gp~G~G 94 (382)
..|++||+|+.|.|++|.+.+-+.+..|++.. +++. +||+||||.|
T Consensus 259 kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlG 338 (877)
T KOG1969|consen 259 KLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLG 338 (877)
T ss_pred ceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCC
Confidence 38999999999999999999999999888431 2222 8999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHH
Q 016800 95 KTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNA 174 (382)
Q Consensus 95 Kt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~ 174 (382)
|||+|+.+|++. ++.++++|++|.+....+++.+....+...... ..+++..+||||+|.-...+.+.
T Consensus 339 KTTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~------adsrP~CLViDEIDGa~~~~Vdv 406 (877)
T KOG1969|consen 339 KTTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHSVLD------ADSRPVCLVIDEIDGAPRAAVDV 406 (877)
T ss_pred hhHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhccccc------cCCCcceEEEecccCCcHHHHHH
Confidence 999999999997 688999999999999999888887665432221 01267899999999999999999
Q ss_pred HHHHHHh--c----C---------------CceEEEEeecCccc-cchhhhcccceEEecCCCHHHHHHHHHHHHHHhCC
Q 016800 175 LRRTMET--Y----S---------------KVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGL 232 (382)
Q Consensus 175 Ll~~le~--~----~---------------~~~~~Il~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 232 (382)
++.+++. + + -.-.||++||+... -+..|+--|.++.|.+++..-+.+.|+.+|..||+
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m 486 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM 486 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC
Confidence 9999871 1 1 11248999987643 45667777889999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC---CCChhhHhhh
Q 016800 233 NLDAEALSTLSSISQGDLRRAITYLQGAARLFGS---SITSKDLISV 276 (382)
Q Consensus 233 ~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~---~It~~~v~~~ 276 (382)
..+..++..|++.+.+|+|.+||.||.++..... .|.+.++-+.
T Consensus 487 r~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~ 533 (877)
T KOG1969|consen 487 RADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAK 533 (877)
T ss_pred CCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhh
Confidence 9999999999999999999999999999887532 3555555443
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=173.60 Aligned_cols=162 Identities=15% Similarity=0.169 Sum_probs=127.5
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC----------------CCCceEEeecC-CCcchHHHHHHHHHHHHhhh
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------YKSRVLELNAS-DDRGINVVRTKIKTFAAVAV 142 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~----------------~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 142 (382)
..|| +||+||+|+||..+|.++++.++|... .+.++..+.+. ...+++++++....+...+.
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3567 999999999999999999999998641 12334443332 24567888887776654332
Q ss_pred cCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCC--------
Q 016800 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL-------- 214 (382)
Q Consensus 143 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~-------- 214 (382)
.. +++||+|||++|+|+.+++|+|++++|+||+++.||++|+.++.+++||+|||+.+.|+++
T Consensus 85 e~---------~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~ 155 (261)
T PRK05818 85 ES---------NGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKV 155 (261)
T ss_pred hc---------CCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhccccc
Confidence 22 3789999999999999999999999999999999999999999999999999999999888
Q ss_pred --CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 016800 215 --SEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (382)
Q Consensus 215 --~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~ 260 (382)
++.++.+.+.. ..+ +++ .++..++|++.+++..++.+
T Consensus 156 ~~~~~~i~~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 156 ESNDRYFQYILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred ccChHHHHHHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHH
Confidence 55666666532 222 333 66778899999999988844
|
|
| >PRK06585 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-21 Score=178.00 Aligned_cols=283 Identities=15% Similarity=0.108 Sum_probs=221.6
Q ss_pred HHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 73 LTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 73 l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
+...+.. +..|.++|||+........+..+.+.+..+.....++..+++.+.. ..+.+.+......+..+
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~--~~~~~~~~~~~t~slF~------ 80 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLD--ADPARLEDEANAISLFG------ 80 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhh--cCHHHHHHHHhCCCCCC------
Confidence 3444443 3555699999999999999999998875544334455666554321 01233333333333332
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc---ccchhhh--cccceEEecCCCHHHHHHHHHH
Q 016800 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLA--SRCAKFRFKPLSEEVMSSRVLH 225 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~ 225 (382)
++++|++.+.+ ....+.|..+++.+++.+.+|+.+...+ ++.+.+. ..+..+.|.+++..++..|+.+
T Consensus 81 ----~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~ 153 (343)
T PRK06585 81 ----GRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDD 153 (343)
T ss_pred ----CceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHH
Confidence 77899999654 3456678899999888888887764432 2333332 2344788999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--CCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 016800 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303 (382)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~--~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (382)
+++..|+.+++++++.+++.++||++.+.+.+++++.+++ +.||.++|.+++....+..++++++++..++...++..
T Consensus 154 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~ 233 (343)
T PRK06585 154 ELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERA 233 (343)
T ss_pred HHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999873 57999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhc------------------------------------CCCCHHHHHHHHHHHHHHh
Q 016800 304 VNNIIAEGYPASLLLSQLFDVVVET------------------------------------EDISDEQQARICKCLAEVD 347 (382)
Q Consensus 304 l~~l~~~g~~~~~i~~~l~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~ 347 (382)
+..|+..|.+|..++..+.++++.. ..|+...+.+++..+.+++
T Consensus 234 l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d 313 (343)
T PRK06585 234 LDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAE 313 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999999998877665554431 4677888999999999999
Q ss_pred hHhhcC-CChHHHHHHHHHHHHHH
Q 016800 348 KCLVDG-ADEYLQLLDVASNVIRA 370 (382)
Q Consensus 348 ~~l~~g-~~~~l~l~~l~~~l~~~ 370 (382)
..++.| .++.+.+|.+++++++.
T Consensus 314 ~~lK~~~~~~~~~le~~i~~~~~~ 337 (343)
T PRK06585 314 LDCRRNPALADAIARRVLLSIAVR 337 (343)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHH
Confidence 999987 48899999999999874
|
|
| >PRK08487 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-20 Score=170.31 Aligned_cols=282 Identities=19% Similarity=0.184 Sum_probs=219.5
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
..+.+.++.+..++ ++|||..-.-....+..+.+.+..++. ... +.++ + ...+ +.+......+..+
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-~~~-~~~~--~-~~~~---~i~~~~~t~plF~----- 70 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE-LKT-LYFD--E-YDFE---QAKDFLSQSSLFG----- 70 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH-hhh-hchh--h-ccHH---HHHHHHhcccccC-----
Confidence 46677788887666 899999999999999999887644332 111 2222 1 1223 3333333333332
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc---ccchhhhcc--cceEEecCCCHHHHHHHHH
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 224 (382)
++++|++.+.........+.|..+++.+++.+.+|++..... ++.+.+... +..+.|.+++..++..|+.
T Consensus 71 -----~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~ 145 (328)
T PRK08487 71 -----GKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQ 145 (328)
T ss_pred -----CceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHH
Confidence 789999998877766667889999999887776666444332 222333332 4578999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHH
Q 016800 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV 304 (382)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (382)
.++++.|+.++++++..++..+++|+..+.+.+++++.+. +.||.++|.+++....+..++++++++..++ .++..+
T Consensus 146 ~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~-~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l 222 (328)
T PRK08487 146 ERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILN-EPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDL 222 (328)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhc-CCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHH
Confidence 9999999999999999999999999999999999999985 4899999999999999999999999999988 578888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHh-----------------------------------cCCCCHHHHHHHHHHHHHHhhH
Q 016800 305 NNIIAEGYPASLLLSQLFDVVVE-----------------------------------TEDISDEQQARICKCLAEVDKC 349 (382)
Q Consensus 305 ~~l~~~g~~~~~i~~~l~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 349 (382)
++|+..|.+|..++..+.++++. .+.|+...+..++..+.++|++
T Consensus 223 ~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~L~e~D~~ 302 (328)
T PRK08487 223 EKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFELLLEWELE 302 (328)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 89988999998876655444322 1478888899999999999999
Q ss_pred hhcC--CChHHHHHHHHHHHHHHHcc
Q 016800 350 LVDG--ADEYLQLLDVASNVIRAVCN 373 (382)
Q Consensus 350 l~~g--~~~~l~l~~l~~~l~~~~~~ 373 (382)
++.| -+..+.++..++++..++++
T Consensus 303 lK~g~~~~~~~~~~~~~~~~~~~~~~ 328 (328)
T PRK08487 303 LKTGQKIDKNLFLLSTLIKIQKILNP 328 (328)
T ss_pred HHcCCCccHHHHHHHHHHHHHHHhcC
Confidence 9999 46688889899999988864
|
|
| >PRK05574 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-20 Score=172.71 Aligned_cols=284 Identities=19% Similarity=0.175 Sum_probs=220.5
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
..+.+.+..+-.+.++|+|+.-.-+...+..+.+....++....++..+++.+. ..+.+.+.+ ...+..+
T Consensus 6 ~~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~l~~~~---~t~~lF~------ 75 (340)
T PRK05574 6 EQLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DWDDVLEAC---QSLPLFS------ 75 (340)
T ss_pred HHHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CHHHHHHHh---hccCccc------
Confidence 345556666633349999998777777778887766544444556666666643 333333322 2222222
Q ss_pred CCCCCcEEEEEeCCCCCCHHHH----HHHHHHHHhcCC--ceEEEEeecCcc---cc---chhhhcccceEEecCCCHHH
Q 016800 151 YPCPPYKIIILDEADSMTEDAQ----NALRRTMETYSK--VTRFFFICNYIS---RI---IEPLASRCAKFRFKPLSEEV 218 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~~~~----~~Ll~~le~~~~--~~~~Il~~~~~~---~l---~~~l~sr~~~i~~~~~~~~~ 218 (382)
++++|+|++++.+..... ..|..++ ++++ ...+++.++..+ ++ .+++.+++..+.|.+++..+
T Consensus 76 ----~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~ 150 (340)
T PRK05574 76 ----DRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAE 150 (340)
T ss_pred ----cCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHH
Confidence 778999999999876533 3344444 3343 334455544322 23 67888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCH
Q 016800 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDF 297 (382)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (382)
+..|+...++..|+.+++++++.+++.++||++.+.+.+++++.+. ++.||.++|.+++....+..++++++++..++.
T Consensus 151 ~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~ 230 (340)
T PRK05574 151 LPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKI 230 (340)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999887 345999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------------------CCCCHHHHHHHHHHH
Q 016800 298 DLANKEVNNIIAEGYPASLLLSQLFDVVVET----------------------------------EDISDEQQARICKCL 343 (382)
Q Consensus 298 ~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 343 (382)
..++..+..++..|.+|..++..+.++++.. +.|+.+.+.+++..+
T Consensus 231 ~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L 310 (340)
T PRK05574 231 KRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLL 310 (340)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999988777665544321 578899999999999
Q ss_pred HHHhhHhhcC--CChHHHHHHHHHHHHH
Q 016800 344 AEVDKCLVDG--ADEYLQLLDVASNVIR 369 (382)
Q Consensus 344 ~~~~~~l~~g--~~~~l~l~~l~~~l~~ 369 (382)
.+++..++.| .++.+.||.+++++|+
T Consensus 311 ~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 311 AETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999 5999999999999985
|
|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=171.93 Aligned_cols=256 Identities=17% Similarity=0.165 Sum_probs=208.0
Q ss_pred HHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHH
Q 016800 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRR 177 (382)
Q Consensus 99 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-~~~~~~Ll~ 177 (382)
+..+.+.+..++..+.+++.+++.+. ..+.+.+.+. ..+..+ ++++++|++++.+. ....+.|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~l~~~~~---~~slf~----------~~kliii~~~~~~~~~~~~~~L~~ 69 (302)
T TIGR01128 4 ADAIRAAALAQGFDEFNVFRIDGEEF-DWNQLLEEAQ---TLPLFS----------ERRLVELRNPEGKPGAKGLKALEE 69 (302)
T ss_pred HHHHHHHHHhCCCchheeeeeccCCC-CHHHHHHHhh---ccCccc----------CCeEEEEECCCCCCCHHHHHHHHH
Confidence 45555665555555667777777654 3343333222 222222 67999999999986 456799999
Q ss_pred HHHhcCCceEEEEeecCccc---cchhhh--cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHH
Q 016800 178 TMETYSKVTRFFFICNYISR---IIEPLA--SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (382)
Q Consensus 178 ~le~~~~~~~~Il~~~~~~~---l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~ 252 (382)
+++++++++.+|++++..+. +.+.+. ++|..+.|.+++..++..|+...+++.|+.+++++++.+++.++||++.
T Consensus 70 ~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 70 YLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLA 149 (302)
T ss_pred HHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999888888765432 223343 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---
Q 016800 253 AITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET--- 328 (382)
Q Consensus 253 a~~~l~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--- 328 (382)
+.+.+++++.+. ++.||.++|..++.......++++++++..++...++..++.+...|.+|..++..+.++++..
T Consensus 150 l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~ 229 (302)
T TIGR01128 150 IAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQL 229 (302)
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999986 4579999999999988888899999999999999999999999999999988777665544321
Q ss_pred -------------------------------CCCCHHHHHHHHHHHHHHhhHhh-cC-CChHHHHHHHHHHHH
Q 016800 329 -------------------------------EDISDEQQARICKCLAEVDKCLV-DG-ADEYLQLLDVASNVI 368 (382)
Q Consensus 329 -------------------------------~~~~~~~~~~~~~~~~~~~~~l~-~g-~~~~l~l~~l~~~l~ 368 (382)
+.|+...+..++..+.+++..++ .| .++.+.+|.+++++|
T Consensus 230 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 230 KRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 46778899999999999999999 34 799999999999885
|
subunit around DNA forming a DNA sliding clamp. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.4e-21 Score=165.42 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=148.1
Q ss_pred CCCCccc--CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~--g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
.+|++++ ++..++..+.++......++++|+||+|+||||+++++++.+...+ ..+.+++..... ....+.++
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~--~~~~~~~~ 93 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRA--WFVPEVLE 93 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHh--hhhHHHHH
Confidence 3778777 4677888888888776666799999999999999999999874321 233333332210 11112122
Q ss_pred HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcC--CceEEEEeecCc-cc---cchhhhccc-
Q 016800 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYS--KVTRFFFICNYI-SR---IIEPLASRC- 206 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~--~~~~~Il~~~~~-~~---l~~~l~sr~- 206 (382)
.+. ...+++|||++.+. +..+..|+.++.... +...+|++++.+ .. +.+.++||+
T Consensus 94 ~~~----------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 94 GME----------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred Hhh----------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHh
Confidence 211 33599999999985 345666766666542 234577777654 33 579999999
Q ss_pred --ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhC
Q 016800 207 --AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (382)
Q Consensus 207 --~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~ 278 (382)
.++.+++|+.++..+++++.+...|+.++++++++|++.++||+|.+++.++.+...+ +..||.+.++++++
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 6999999999999999999898889999999999999999999999999999875332 57799888877653
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-21 Score=186.38 Aligned_cols=212 Identities=21% Similarity=0.313 Sum_probs=136.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-----EEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCceEE
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-----MLFYGPPGTGKTTTALAIAHQLFGPE--LYKSRVLE 118 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-----lll~Gp~G~GKt~la~~la~~l~~~~--~~~~~~~~ 118 (382)
....||.+||+|.+++|++||++.++.+..|+.....++ ++|+||+|+|||++++.+++.+...- +.+ .+..
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~n-pv~~ 147 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSN-PTLP 147 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhh-hhhh
Confidence 345799999999999999999999999999998754433 89999999999999999999873210 100 0000
Q ss_pred eecCC---------------CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-hc
Q 016800 119 LNASD---------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-TY 182 (382)
Q Consensus 119 ~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le-~~ 182 (382)
....+ ....+.....+....... ...+....++++||+|||++.+.......+..++. ..
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~----~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~ 223 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKL----QMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKY 223 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhhh----cccccccCCceeEEEeecchhhchhhHHHHHHHHHHHh
Confidence 00000 011122222222111000 00000112367899999998775433222333322 11
Q ss_pred --CCceEEEEeecC-cc-------c-------cchhhhc--ccceEEecCCCHHHHHHHHHHHHHHhCCC------C-CH
Q 016800 183 --SKVTRFFFICNY-IS-------R-------IIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEEGLN------L-DA 236 (382)
Q Consensus 183 --~~~~~~Il~~~~-~~-------~-------l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~------~-~~ 236 (382)
...+.+|++++. +. . +.+.+++ |+.+|.|+|++..++.+.|.++++.++.. + ++
T Consensus 224 ~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~ 303 (637)
T TIGR00602 224 VSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKK 303 (637)
T ss_pred hcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCH
Confidence 223345555442 11 1 2368887 56689999999999999999999887532 2 46
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 237 EALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 237 ~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+++..|+..++||+|.||+.||.++.
T Consensus 304 ~~l~~I~~~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 304 TSVELLCQGCSGDIRSAINSLQFSSS 329 (637)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 78999999999999999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=161.91 Aligned_cols=201 Identities=13% Similarity=0.191 Sum_probs=141.5
Q ss_pred CCCCCcccCcHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 57 PKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 57 p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
+.+|+++++++... ..+.+.......|.++||||||+||||+++++++++...+ ..+..++..... ......+
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~--~~~~~~~ 86 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQ--YFSPAVL 86 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhh--hhhHHHH
Confidence 46899999765432 3333333344445589999999999999999999874332 223333332110 0011111
Q ss_pred HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC--ceEEEEeecC-ccc---cchhhhccc
Q 016800 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK--VTRFFFICNY-ISR---IIEPLASRC 206 (382)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~--~~~~Il~~~~-~~~---l~~~l~sr~ 206 (382)
..+. +..+++|||++.+. ...+..|+.+++.... ...+|++++. +.. ..+.++||+
T Consensus 87 ~~~~----------------~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl 150 (229)
T PRK06893 87 ENLE----------------QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL 150 (229)
T ss_pred hhcc----------------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH
Confidence 1111 45699999999874 3445678888876543 3345566654 332 458999998
Q ss_pred c---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhC
Q 016800 207 A---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (382)
Q Consensus 207 ~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~ 278 (382)
. .+.+++|+.++...++++.+...++.++++++++|++.++||+|.+++.++.+...+ +..||.+.++++++
T Consensus 151 ~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 151 TWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred hcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 7 899999999999999999999999999999999999999999999999998775332 46799888877653
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=158.74 Aligned_cols=208 Identities=18% Similarity=0.239 Sum_probs=146.1
Q ss_pred hhhhhcCC-CCCCcccCcH-HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch
Q 016800 50 PWVEKYRP-KQVKDVAHQE-EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (382)
Q Consensus 50 ~~~~k~~p-~~~~~~~g~~-~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (382)
|+.-.++| .+|+++++.+ .....+...........++|+||+|+||||++.+++..+...+ ..+..++..+. .
T Consensus 7 ~l~~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~--~ 81 (233)
T PRK08727 7 PLALRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAA--A 81 (233)
T ss_pred cccCCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHh--h
Confidence 33333444 4888888654 3344444443333223399999999999999999999874432 23444443221 1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcC-CceEEEEeecCc-c---ccch
Q 016800 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYS-KVTRFFFICNYI-S---RIIE 200 (382)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~-~~~~~Il~~~~~-~---~l~~ 200 (382)
..+...+..+. +..+|+|||++.+. ...+..++.+++... ....+|++++.+ . .+.+
T Consensus 82 ~~~~~~~~~l~----------------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 82 GRLRDALEALE----------------GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred hhHHHHHHHHh----------------cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 11222222221 44699999999985 445677888887543 234577877653 3 3579
Q ss_pred hhhcc---cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh---cCCCCChhhHh
Q 016800 201 PLASR---CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKDLI 274 (382)
Q Consensus 201 ~l~sr---~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~---~~~~It~~~v~ 274 (382)
.++|| +..+.|++|+.+++..++++++...++.+++++++.|++.++||+|.+++.++.+... .+..||.+.++
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~ 225 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLR 225 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999 7799999999999999999999999999999999999999999999999998877532 25678888777
Q ss_pred hhhC
Q 016800 275 SVSG 278 (382)
Q Consensus 275 ~~~~ 278 (382)
+++.
T Consensus 226 ~~l~ 229 (233)
T PRK08727 226 RVLE 229 (233)
T ss_pred HHHh
Confidence 7653
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=173.40 Aligned_cols=229 Identities=20% Similarity=0.215 Sum_probs=157.8
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc---CCCC-c-EEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceE
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET---ANCP-H-MLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVL 117 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~---~~~~-~-lll~Gp~G~GKt~la~~la~~l~~~----~~~~~~~~ 117 (382)
+...+...|.| +.++|+++.++.|..++.. +..+ + ++|+|+||||||++++.+.+.+... ......++
T Consensus 744 A~rvL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vV 820 (1164)
T PTZ00112 744 AIRMMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVF 820 (1164)
T ss_pred HHHHcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 33455566777 6788999988877776653 2333 4 5799999999999999999887321 12235678
Q ss_pred EeecCCCcchHHHHHHHH-HHHHhhhcCCCC--------CCCC--CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---
Q 016800 118 ELNASDDRGINVVRTKIK-TFAAVAVGSGQR--------RGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETYS--- 183 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~--------~~~~--~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~--- 183 (382)
++||........+...+. .+.......+.. .... ......||||||+|.+....++.|+.+++.+.
T Consensus 821 YINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~ 900 (1164)
T PTZ00112 821 EINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKIN 900 (1164)
T ss_pred EEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccC
Confidence 999865433332222221 110000000000 0000 01134599999999998777888888887543
Q ss_pred CceEEEEeecC---ccccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---hcCCCHHHHHH
Q 016800 184 KVTRFFFICNY---ISRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---ISQGDLRRAIT 255 (382)
Q Consensus 184 ~~~~~Il~~~~---~~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~s~gdlr~a~~ 255 (382)
..+.+|.++|. +..+.+.++||+. .+.|+|++.+++.++|..++......+++++++.+++ ..+||.|.|++
T Consensus 901 SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALD 980 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQ 980 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHH
Confidence 34556677765 4567889999987 5999999999999999999986544589999999998 66899999999
Q ss_pred HHHHHHHhc-CCCCChhhHhhhhC
Q 016800 256 YLQGAARLF-GSSITSKDLISVSG 278 (382)
Q Consensus 256 ~l~~~~~~~-~~~It~~~v~~~~~ 278 (382)
+|..++... +..|+.++|.++..
T Consensus 981 ILRrAgEikegskVT~eHVrkAle 1004 (1164)
T PTZ00112 981 ICRKAFENKRGQKIVPRDITEATN 1004 (1164)
T ss_pred HHHHHHhhcCCCccCHHHHHHHHH
Confidence 999887654 45688888887764
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=158.41 Aligned_cols=197 Identities=17% Similarity=0.202 Sum_probs=148.9
Q ss_pred CCCCCccc--CcHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 57 PKQVKDVA--HQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 57 p~~~~~~~--g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
|.+|++++ +++.+...+..+.... ...+++|+||+|+|||++++++++.....+ ..+..+++.... ..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~------~~ 84 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPL------LA 84 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhH------HH
Confidence 56788888 3467778888877633 334599999999999999999999874432 345555554321 11
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCc--eEEEEeecCcc---ccchhhhccc--
Q 016800 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV--TRFFFICNYIS---RIIEPLASRC-- 206 (382)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~--~~~Il~~~~~~---~l~~~l~sr~-- 206 (382)
+.. . ....+|+|||++.++...+..|+.+++..... ..+|++++.+. .+.+.+.||+
T Consensus 85 ~~~------~----------~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 85 FDF------D----------PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred Hhh------c----------ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 100 0 04469999999999988899999999764432 23555554322 3557788886
Q ss_pred -ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhC
Q 016800 207 -AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (382)
Q Consensus 207 -~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~ 278 (382)
..+.++|++.++...++...+.+.++.+++++++.|++.++||++.+.+.++.+..++ +..||...++++++
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLA 224 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 5899999999999999999998999999999999999999999999999998876544 57899999888775
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-18 Score=158.02 Aligned_cols=232 Identities=18% Similarity=0.229 Sum_probs=153.3
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEE
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLE 118 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~ 118 (382)
.....+...|.|. +++|+++.++.+..++.. +..++++|+||||+|||++++.+++.+.... .....+++
T Consensus 3 ~~~~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~ 79 (365)
T TIGR02928 3 RNRDLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVY 79 (365)
T ss_pred CChhhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEE
Confidence 3455677888884 678999999888887763 3444699999999999999999998874211 11146778
Q ss_pred eecCCCcchHH-HHHHHHHHHH--hhhc-CCCCC--------CCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHHH-----
Q 016800 119 LNASDDRGINV-VRTKIKTFAA--VAVG-SGQRR--------GGY-PCPPYKIIILDEADSMTEDAQNALRRTME----- 180 (382)
Q Consensus 119 ~~~~~~~~~~~-~~~~l~~~~~--~~~~-~~~~~--------~~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le----- 180 (382)
+++........ +......+.. .... .+... ... ..++..||+|||+|.+....+..|..++.
T Consensus 80 in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 80 VNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG 159 (365)
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc
Confidence 88865433222 2222222211 0000 00000 000 12256789999999995332333333332
Q ss_pred hcC-CceEEEEeecCcc---ccchhhhcccc--eEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHH---hcCCC
Q 016800 181 TYS-KVTRFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSS---ISQGD 249 (382)
Q Consensus 181 ~~~-~~~~~Il~~~~~~---~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~---~s~gd 249 (382)
+.+ .++.+|+++|.+. .+.+.+.+|+. .+.|+|++.+++.+++..+++. .+..+++++++.++. .++||
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 239 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD 239 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC
Confidence 222 4567888888764 57788888884 7999999999999999998863 223478887776554 55799
Q ss_pred HHHHHHHHHHHHHhc----CCCCChhhHhhhhCCC
Q 016800 250 LRRAITYLQGAARLF----GSSITSKDLISVSGVI 280 (382)
Q Consensus 250 lr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~ 280 (382)
+|.+++.+..++..+ ...||.++|.++....
T Consensus 240 ~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999999999877654 2569999998877543
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=152.51 Aligned_cols=177 Identities=27% Similarity=0.319 Sum_probs=132.1
Q ss_pred cCCCCCCcccCcHHHHH---HHHHHHHcC------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 55 YRPKQVKDVAHQEEVVR---VLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~---~l~~~l~~~------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
...-+|+|++||+++++ .+.+++++. .+.++|||||||||||++|++++++. +..++.+++....
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~li 188 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATELI 188 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc------CCceEEechHHHH
Confidence 34458999999999884 456666553 34569999999999999999999987 4566666665433
Q ss_pred ch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC------------HHHHHHHHHHHHhc--CCceEEE
Q 016800 126 GI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETY--SKVTRFF 189 (382)
Q Consensus 126 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~~Ll~~le~~--~~~~~~I 189 (382)
+. .+....+..+...+... .+.|++|||+|.+. .+..|+|+.-|+.. ...++.|
T Consensus 189 GehVGdgar~Ihely~rA~~~----------aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 189 GEHVGDGARRIHELYERARKA----------APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhc----------CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 21 12223333333332222 56799999999874 23568888888754 3467788
Q ss_pred EeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 016800 190 FICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (382)
Q Consensus 190 l~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g 248 (382)
.+||.+..++++++||+. .|+|.-|+.++...++...+++.-++++.+ ++.++..++|
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g 317 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKG 317 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCC
Confidence 889999999999999998 899999999999999999998877766655 7777877755
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=157.71 Aligned_cols=200 Identities=17% Similarity=0.190 Sum_probs=147.9
Q ss_pred CCCCCccc--CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 57 PKQVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 57 p~~~~~~~--g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
|.+|++++ ++...+..+.+++......+++|+||+|||||++++.+++.....+ ..++.+++.+... .....+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~--~~~~~~ 85 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQ--ADPEVL 85 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHH--hHHHHH
Confidence 45778887 3677889999988766666799999999999999999999874332 3455566543211 111111
Q ss_pred HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcC-CceEEEEeecCcc-c--cc-hhhhcccc
Q 016800 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYS-KVTRFFFICNYIS-R--II-EPLASRCA 207 (382)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~--~~~Ll~~le~~~-~~~~~Il~~~~~~-~--l~-~~l~sr~~ 207 (382)
..+ . +..+|+|||++.++... ++.|+.+++... ....+|++++... . .. +.+.+|+.
T Consensus 86 ~~~------~----------~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 86 EGL------E----------QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred hhc------c----------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 110 0 34599999999998643 788888877532 2346777776432 2 22 77888863
Q ss_pred ---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhh
Q 016800 208 ---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVS 277 (382)
Q Consensus 208 ---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~ 277 (382)
.+.+++++.++...++...+.+.++.+++++++.|++.++||+|.+.+.++.+...+ ++.||.+.+++++
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 899999999999999999888889999999999999999999999999988766533 6678888877654
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=161.24 Aligned_cols=191 Identities=21% Similarity=0.247 Sum_probs=136.2
Q ss_pred CCCcccCcHHHHHHHHHHHH----------c-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceEEeecC
Q 016800 59 QVKDVAHQEEVVRVLTNTLE----------T-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNAS 122 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~----------~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~ 122 (382)
.+++++|.+.+++.+..... . +..+|++|+||||||||++|+.+++.+...+. ....+++++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 35689999999877764421 1 13456999999999999999999998743322 22345555554
Q ss_pred CCcchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHHhcCCceEEEEee
Q 016800 123 DDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 123 ~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
+..+.. .....+....... ...||+|||+|.+. .+.++.|++.+++.....++|+++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-------------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-------------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-------------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 321110 0011112211111 23599999999975 456788999999887777777776
Q ss_pred cCc-----cccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----------cCCCHHHHHHH
Q 016800 193 NYI-----SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----------SQGDLRRAITY 256 (382)
Q Consensus 193 ~~~-----~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----------s~gdlr~a~~~ 256 (382)
... ..+.+.+++|+. .+.|++++.+++.+++++.++..+..++++++..+++. +.||.|.+.|.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 432 236789999995 79999999999999999999998888999998888543 36999999999
Q ss_pred HHHHHH
Q 016800 257 LQGAAR 262 (382)
Q Consensus 257 l~~~~~ 262 (382)
++.+..
T Consensus 231 ~e~a~~ 236 (261)
T TIGR02881 231 IEKAIR 236 (261)
T ss_pred HHHHHH
Confidence 998664
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=170.61 Aligned_cols=211 Identities=22% Similarity=0.358 Sum_probs=139.2
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcC---CC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA---NC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~---~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
....||++||+|.+.+|+..|++.++.+..|++.. .. ..+||+||+||||||+++.+++++. ..+.++.
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg------~~v~Ew~ 77 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG------FEVQEWI 77 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC------CeeEEec
Confidence 46789999999999999999999999999999763 22 2289999999999999999999983 3344432
Q ss_pred cCCC-----------cc----hHHHHHHHHHHHHhhhcCCCC-----CCCCCCCCcEEEEEeCCCCCCHHHHHHHH----
Q 016800 121 ASDD-----------RG----INVVRTKIKTFAAVAVGSGQR-----RGGYPCPPYKIIILDEADSMTEDAQNALR---- 176 (382)
Q Consensus 121 ~~~~-----------~~----~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~vliiDe~d~l~~~~~~~Ll---- 176 (382)
.+.. .+ .+........|.......... .+.-...+.+||+|+|+..+.......|.
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~ 157 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALR 157 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHH
Confidence 2111 00 000011122222111110000 01111236789999999987543334444
Q ss_pred HHHHhcCC-ceEEEEee-c------Ccc--------ccchhhhc--ccceEEecCCCHHHHHHHHHHHHHHh-----CC-
Q 016800 177 RTMETYSK-VTRFFFIC-N------YIS--------RIIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEE-----GL- 232 (382)
Q Consensus 177 ~~le~~~~-~~~~Il~~-~------~~~--------~l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~-----~~- 232 (382)
+++..... .++||++- + ... .+.+.+.. ++..|.|+|++..-+++.|.+++..+ +.
T Consensus 158 ~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 158 QYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 44444333 55555551 1 111 23455655 35589999999999999999999988 32
Q ss_pred CCC--HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 233 NLD--AEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 233 ~~~--~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
..+ .+.++.|++.+.||+|.||+.||..+.
T Consensus 238 ~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 222 346999999999999999999999887
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-18 Score=160.92 Aligned_cols=233 Identities=22% Similarity=0.269 Sum_probs=158.5
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~ 119 (382)
.+....++...|.| +.++|+++.++.|...+.. +..++++|+||||+|||++++.+++.+.... ....++++
T Consensus 16 ~~~~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~i 91 (394)
T PRK00411 16 IFKDEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYI 91 (394)
T ss_pred eeCChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 45677788888878 5678999888888777643 3445699999999999999999999874322 23567778
Q ss_pred ecCCCcchHH-HHHHHHHHHHhhh-cCCCCCC--------C-CCCCCcEEEEEeCCCCCC----HHHHHHHHHHHHhcCC
Q 016800 120 NASDDRGINV-VRTKIKTFAAVAV-GSGQRRG--------G-YPCPPYKIIILDEADSMT----EDAQNALRRTMETYSK 184 (382)
Q Consensus 120 ~~~~~~~~~~-~~~~l~~~~~~~~-~~~~~~~--------~-~~~~~~~vliiDe~d~l~----~~~~~~Ll~~le~~~~ 184 (382)
++........ +......+..... ..+.... . ...+.+.||+|||+|.+. .+....|++.++..+.
T Consensus 92 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~ 171 (394)
T PRK00411 92 NCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPG 171 (394)
T ss_pred ECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCC
Confidence 8765433222 1222221111000 0000000 0 011245799999999986 3344555555554433
Q ss_pred -ceEEEEeecCcc---ccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhc---CCCHHHH
Q 016800 185 -VTRFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---QGDLRRA 253 (382)
Q Consensus 185 -~~~~Il~~~~~~---~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s---~gdlr~a 253 (382)
++.+|++++... .+.+.+++|+. .+.|+|++.+++.+++..+++.. ...+++++++.+++.+ .||+|.+
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 566888887653 46677888874 78999999999999999988653 2357999999998887 8999999
Q ss_pred HHHHHHHHHhc----CCCCChhhHhhhhCCC
Q 016800 254 ITYLQGAARLF----GSSITSKDLISVSGVI 280 (382)
Q Consensus 254 ~~~l~~~~~~~----~~~It~~~v~~~~~~~ 280 (382)
++++..++..+ ...|+.++|.++....
T Consensus 252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 99998776554 3569999998887644
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=171.28 Aligned_cols=231 Identities=22% Similarity=0.306 Sum_probs=163.4
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASDD 124 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~~ 124 (382)
.|..+.+||.+|++++|++..++.+...+.....++++|+||+|||||++|+.+.+....... ....++.+++...
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 567788999999999999999998888887777778999999999999999999876532111 1345677776542
Q ss_pred cc-hHHHHHHH-------------HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------
Q 016800 125 RG-INVVRTKI-------------KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------- 183 (382)
Q Consensus 125 ~~-~~~~~~~l-------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------- 183 (382)
.. ...+...+ ..+...... ....+........+++|||++.|+...++.|++.+++..
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~-~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~ 300 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVP-EPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSY 300 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC-chhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecce
Confidence 11 11110000 000000000 000111111234599999999999999999999998632
Q ss_pred -------------------CceEEEEe---ecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 016800 184 -------------------KVTRFFFI---CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241 (382)
Q Consensus 184 -------------------~~~~~Il~---~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 241 (382)
..+.|+++ ++.+..+.+++++||..+.|+|++.+++..++.+.+.+.++.+++++++.
T Consensus 301 ~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~ 380 (615)
T TIGR02903 301 YDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEEL 380 (615)
T ss_pred eccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 11223433 34566788999999999999999999999999999998888899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhc------------CCCCChhhHhhhhCCCC
Q 016800 242 LSSISQGDLRRAITYLQGAARLF------------GSSITSKDLISVSGVIP 281 (382)
Q Consensus 242 l~~~s~gdlr~a~~~l~~~~~~~------------~~~It~~~v~~~~~~~~ 281 (382)
|++.+. +.|++++.|+.+..+. ...|+.++|+++++...
T Consensus 381 L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 381 IARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 888765 6799999997764331 12577888888876553
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=145.05 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=142.2
Q ss_pred HHHHHHHHHcCCCCc-EEEeCCCC-CCHHHHHHHHHHHhcCCC---CCCCceEEeecC-------CCcchHHHHHHHHHH
Q 016800 70 VRVLTNTLETANCPH-MLFYGPPG-TGKTTTALAIAHQLFGPE---LYKSRVLELNAS-------DDRGINVVRTKIKTF 137 (382)
Q Consensus 70 ~~~l~~~l~~~~~~~-lll~Gp~G-~GKt~la~~la~~l~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~l~~~ 137 (382)
+..|.+.++.+++.| +||.|..+ +||..++..+++.++|.+ ..+.++..+.+. ...+++++|+....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 457888999999999 99999998 999999999999988753 223455555433 245788999866655
Q ss_pred HHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHH
Q 016800 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217 (382)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~ 217 (382)
...+..+ ++||++|+++|.|+.+++|+|++++|+||.++.||++|+.+..+++||+|||+.+.|+.+...
T Consensus 82 ~~~p~~g----------~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~ 151 (263)
T PRK06581 82 SKTSAIS----------GYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILH 151 (263)
T ss_pred hhCcccC----------CcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHH
Confidence 5443322 889999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
...++....+. ...+...++.|.+...-|....+...+.+-
T Consensus 152 ~~~e~~~~~~~---p~~~~~~l~~i~~~~~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 152 AYNELYSQFIQ---PIADNKTLDFINRFTTKDRELWLDFIDNLL 192 (263)
T ss_pred HHHHHHHHhcc---cccccHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88887754332 223556688888877777766666665543
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=159.76 Aligned_cols=210 Identities=22% Similarity=0.324 Sum_probs=142.4
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHH-----cCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-----TANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~-----~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
....+|.+||+|.+.+++..|++-+..+..|++ ....++ +||+||+||||||+++.+++++. ..+.+
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg------~~~~E 140 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG------YQLIE 140 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC------ceeee
Confidence 567899999999999999999999999999998 555665 89999999999999999999983 33333
Q ss_pred eecC-----------CCcc----hHHHHHHHHHHHHhhh--cCCCCCCCCCCCCcEEEEEeCCCCCCHH-H----HHHHH
Q 016800 119 LNAS-----------DDRG----INVVRTKIKTFAAVAV--GSGQRRGGYPCPPYKIIILDEADSMTED-A----QNALR 176 (382)
Q Consensus 119 ~~~~-----------~~~~----~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~vliiDe~d~l~~~-~----~~~Ll 176 (382)
+..+ +..+ ...--..++.|..... +.-...+.-..+.+++|+|||+...... . ++.|.
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR 220 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH
Confidence 3311 0000 1111122333333221 1111111112336679999999877432 2 44555
Q ss_pred HHHHhcCCceEEEEee------cCccc-cchh--hhcccceEEecCCCHHHHHHHHHHHHHHhCCCCC------HHHHHH
Q 016800 177 RTMETYSKVTRFFFIC------NYISR-IIEP--LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD------AEALST 241 (382)
Q Consensus 177 ~~le~~~~~~~~Il~~------~~~~~-l~~~--l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~ 241 (382)
.+...+...++||++- |+..+ ..+. ..-|...|.|+|..+.-+++.|..+|..++...+ ...++.
T Consensus 221 ~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~ 300 (634)
T KOG1970|consen 221 LYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVEL 300 (634)
T ss_pred HHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHH
Confidence 4444444444444442 11111 2233 3345669999999999999999999999887766 677899
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 016800 242 LSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 242 l~~~s~gdlr~a~~~l~~~~ 261 (382)
++..++||+|.|++.||..+
T Consensus 301 i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 301 ICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHhcCccHHHHHhHhhhhc
Confidence 99999999999999999764
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-18 Score=147.90 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=144.1
Q ss_pred hcCC-CCCCccc-Cc-HHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch
Q 016800 54 KYRP-KQVKDVA-HQ-EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (382)
Q Consensus 54 k~~p-~~~~~~~-g~-~~~~~~l~~~l~~~---~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (382)
.+.| .+|++++ |. ..+...+.++.... ..+.++|+||+|+||||+++++++++... ...+++++..+..
T Consensus 11 ~~~~~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~~-- 85 (234)
T PRK05642 11 RLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAELL-- 85 (234)
T ss_pred CCCCcccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHHH--
Confidence 3344 4788887 33 33344455554321 12348999999999999999999887432 2345555553321
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecC-cc---ccch
Q 016800 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNY-IS---RIIE 200 (382)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~-~~---~l~~ 200 (382)
......+..+. +..+++|||++.+. +..+..|+.+++.... ...+|++++. +. ...+
T Consensus 86 ~~~~~~~~~~~----------------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~ 149 (234)
T PRK05642 86 DRGPELLDNLE----------------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLP 149 (234)
T ss_pred hhhHHHHHhhh----------------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCc
Confidence 11111111111 33599999999874 3556779999876543 4556777654 22 2469
Q ss_pred hhhccc---ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHh
Q 016800 201 PLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLI 274 (382)
Q Consensus 201 ~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~ 274 (382)
.++||+ .++.+++|+.++...+++..+...++.+++++++.|++.++||+|.+.+.++.+...+ +..||...++
T Consensus 150 ~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~ 229 (234)
T PRK05642 150 DLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLK 229 (234)
T ss_pred cHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHH
Confidence 999999 6899999999999999998888889999999999999999999999999998886543 4789988888
Q ss_pred hhhC
Q 016800 275 SVSG 278 (382)
Q Consensus 275 ~~~~ 278 (382)
++++
T Consensus 230 ~~L~ 233 (234)
T PRK05642 230 ETLG 233 (234)
T ss_pred HHhc
Confidence 7653
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-18 Score=145.89 Aligned_cols=190 Identities=12% Similarity=0.131 Sum_probs=130.2
Q ss_pred hhhhhcCCCCCCccc-C--cHHHHHHHHHHHHcC-CC---CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 50 PWVEKYRPKQVKDVA-H--QEEVVRVLTNTLETA-NC---PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~-g--~~~~~~~l~~~l~~~-~~---~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++..+| +|++++ | +..+...+..+.+.. .. +.++||||+|+||||+++++++... ..+ +...
T Consensus 8 ~~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~------~~~--~~~~ 76 (214)
T PRK06620 8 TTSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN------AYI--IKDI 76 (214)
T ss_pred CCCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC------CEE--cchh
Confidence 444444 556555 3 456777777777532 22 3499999999999999999887641 111 1110
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC-cc--ccc
Q 016800 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY-IS--RII 199 (382)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~-~~--~l~ 199 (382)
.. .. .+. . ...+++|||+|.+.....-.++..+.+.. ..++++++. +. .+
T Consensus 77 ~~-----~~----~~~-----~----------~~d~lliDdi~~~~~~~lf~l~N~~~e~g--~~ilits~~~p~~l~l- 129 (214)
T PRK06620 77 FF-----NE----EIL-----E----------KYNAFIIEDIENWQEPALLHIFNIINEKQ--KYLLLTSSDKSRNFTL- 129 (214)
T ss_pred hh-----ch----hHH-----h----------cCCEEEEeccccchHHHHHHHHHHHHhcC--CEEEEEcCCCccccch-
Confidence 00 00 010 0 33599999999774332223333333322 245555542 22 24
Q ss_pred hhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhH
Q 016800 200 EPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDL 273 (382)
Q Consensus 200 ~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v 273 (382)
+.++||+. ++.+++|+.+++..++++.+...|+.++++++++|++.++||+|.+++.++.+...+ +..||.+.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~ 209 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLV 209 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89999998 999999999999999999999889999999999999999999999999999875432 466888887
Q ss_pred hhhh
Q 016800 274 ISVS 277 (382)
Q Consensus 274 ~~~~ 277 (382)
++++
T Consensus 210 ~~~l 213 (214)
T PRK06620 210 KEVL 213 (214)
T ss_pred HHHh
Confidence 7654
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=152.27 Aligned_cols=190 Identities=24% Similarity=0.222 Sum_probs=134.3
Q ss_pred CcccCcHHHHHHHHHHHH----------c-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceEEeecCCC
Q 016800 61 KDVAHQEEVVRVLTNTLE----------T-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~----------~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~-~~~~~~~~~~~~ 124 (382)
++++|.+.+++.+..++. . ....|++|+||||||||++|+++++.+...+.. ...+++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 479999998887765531 1 123359999999999999999999987543321 223566654321
Q ss_pred cchHH--HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 125 RGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 125 ~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.+... ............ ...|++|||++.+ +.+.++.|+..|++....+++|++++
T Consensus 103 ~~~~~g~~~~~~~~~l~~a-------------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~ 169 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA-------------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGY 169 (287)
T ss_pred HHHHhccchHHHHHHHHHc-------------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 11000 000011111111 3359999999986 45678899999998888888888765
Q ss_pred Cc--c---ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHH
Q 016800 194 YI--S---RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQG 259 (382)
Q Consensus 194 ~~--~---~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~gdlr~a~~~l~~ 259 (382)
.. . ...+.+++|+. .+.|++++.+++.+++...+++.+..+++++...+... ..||.|.+.+.++.
T Consensus 170 ~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 170 KDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred cHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 32 1 23489999998 89999999999999999999999998998877666653 24899999999988
Q ss_pred HHHh
Q 016800 260 AARL 263 (382)
Q Consensus 260 ~~~~ 263 (382)
+...
T Consensus 250 ~~~~ 253 (287)
T CHL00181 250 ARMR 253 (287)
T ss_pred HHHH
Confidence 7754
|
|
| >COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-16 Score=145.58 Aligned_cols=283 Identities=18% Similarity=0.181 Sum_probs=216.7
Q ss_pred HHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCC
Q 016800 73 LTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (382)
Q Consensus 73 l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (382)
+...+..+ ..|-+++||+.-.-....+..+.+... .+........+...+. ... ..+......+..+
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~s~~lF~------- 73 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL-ADGFDENYSFFDDSEL-DWA---DLLSELESPSLFG------- 73 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHh-ccchhhHHhhcccccC-CHH---HHHHHhhcccccc-------
Confidence 34445555 344499999998888888888888775 2222222222222211 222 2232222222222
Q ss_pred CCCCcEEEEEeCCCCCC-HHHHHHHHHHHHhcC-CceEEEEeecCccc---cchhhhcc--cceEEecCCCHHHHHHHHH
Q 016800 152 PCPPYKIIILDEADSMT-EDAQNALRRTMETYS-KVTRFFFICNYISR---IIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 152 ~~~~~~vliiDe~d~l~-~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~---l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 224 (382)
+.++++|...+... .+....+......+| ..+.+++.++..++ ..+.+.+- +..+.+.+++.+++.+|+.
T Consensus 74 ---~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~ 150 (334)
T COG1466 74 ---EKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIK 150 (334)
T ss_pred ---CCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHH
Confidence 56899999988876 555666667766666 55555555544332 33344333 5589999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 016800 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303 (382)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (382)
.++++.|+.+++++++.++...+||++.+.+.+++++.+. ++.||.++|..++........+++++++..++..+++..
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~ 230 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRL 230 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999998 348999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhc----------------------------------CCCCHHHHHHHHHHHHHHhhH
Q 016800 304 VNNIIAEGYPASLLLSQLFDVVVET----------------------------------EDISDEQQARICKCLAEVDKC 349 (382)
Q Consensus 304 l~~l~~~g~~~~~i~~~l~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~ 349 (382)
+++++..|++|..++..+.++++.. .+++...+.+++..+.+++..
T Consensus 231 l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d~~ 310 (334)
T COG1466 231 LRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKALRLLAQLDYQ 310 (334)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887776631 238999999999999999999
Q ss_pred hhcCC-ChHHHHHHHHHHHHHH
Q 016800 350 LVDGA-DEYLQLLDVASNVIRA 370 (382)
Q Consensus 350 l~~g~-~~~l~l~~l~~~l~~~ 370 (382)
++.|. ++...++.++++++..
T Consensus 311 ~K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 311 IKTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HhcCCccchHHHHHHHHHHhhc
Confidence 99997 7888999999888753
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-17 Score=149.92 Aligned_cols=238 Identities=21% Similarity=0.289 Sum_probs=161.5
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHH----HHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~----l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
....+.+.|-|.. +.+++..+..+... +.++.+.++++|||||||||++++.+.+++..... ...++++||.
T Consensus 6 n~~vl~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~~~~yINc~ 81 (366)
T COG1474 6 NKDVLLEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NVEVVYINCL 81 (366)
T ss_pred cccccCCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cCceEEEeee
Confidence 3444556677754 77887777666554 45566666999999999999999999999865432 2237889987
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCC--------CC-CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC---ceEEEE
Q 016800 123 DDRGINVVRTKIKTFAAVAVGSGQRRG--------GY-PCPPYKIIILDEADSMTEDAQNALRRTMETYSK---VTRFFF 190 (382)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~---~~~~Il 190 (382)
.......+-..+-......+..+.+.. .+ ..++.-||++||+|.|.....+.|+.++..+.. .+.+|+
T Consensus 82 ~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~ 161 (366)
T COG1474 82 ELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIA 161 (366)
T ss_pred eCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEE
Confidence 655544433322221111111111000 00 123677999999999977666777777664433 345677
Q ss_pred eecCc---cccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHH
Q 016800 191 ICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSS---ISQGDLRRAITYLQGA 260 (382)
Q Consensus 191 ~~~~~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~---~s~gdlr~a~~~l~~~ 260 (382)
++|.. ..+.+.++|+.. .+.|+|++.+|+..+|..+++.. .-.+++++++.++. ..+||.|.|+..|..+
T Consensus 162 i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 162 VSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred EeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 77765 357788888876 68899999999999999998742 23478888887774 4478999999999998
Q ss_pred HHhc----CCCCChhhHhhhhCCCCHHHHHHH
Q 016800 261 ARLF----GSSITSKDLISVSGVIPPEVVEGL 288 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~~~~~~~~~~~~ 288 (382)
+..+ ...++.++|.++..........+.
T Consensus 242 ~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~ 273 (366)
T COG1474 242 GEIAEREGSRKVSEDHVREAQEEIERDVLEEV 273 (366)
T ss_pred HHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHH
Confidence 8776 478999999988544444333333
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=165.41 Aligned_cols=218 Identities=19% Similarity=0.226 Sum_probs=162.0
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~ 123 (382)
..++.++.+|..+++++|+++.+..+...+.....++++|+||||||||++++.+++.+..... .+..++.++...
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 4588999999999999999999999999888888888999999999999999999998743221 234556665432
Q ss_pred C----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEEEE
Q 016800 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 124 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~Il 190 (382)
. .....+.+.++......... +..|++|||+|.+. .++++.|...++. ....+|.
T Consensus 249 l~a~~~~~g~~e~~l~~i~~~~~~~----------~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~Ig 316 (731)
T TIGR02639 249 LLAGTKYRGDFEERLKAVVSEIEKE----------PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIG 316 (731)
T ss_pred HhhhccccchHHHHHHHHHHHHhcc----------CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEE
Confidence 1 11223444444444322111 34699999999884 3457888888874 4566777
Q ss_pred eecCc-----cccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHH
Q 016800 191 ICNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAIT 255 (382)
Q Consensus 191 ~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g------dlr~a~~ 255 (382)
+|+.. ....+++.+|++.+.+++|+.++...+|+..... .++.++++++..++..+.. -|++|+.
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 77752 3468999999999999999999999999976654 3567999999999998843 3889999
Q ss_pred HHHHHHHhc--------CCCCChhhHhhhh
Q 016800 256 YLQGAARLF--------GSSITSKDLISVS 277 (382)
Q Consensus 256 ~l~~~~~~~--------~~~It~~~v~~~~ 277 (382)
+++.++... ...++.+++..++
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVV 426 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHH
Confidence 998876532 1236766666655
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=151.44 Aligned_cols=208 Identities=12% Similarity=0.173 Sum_probs=147.1
Q ss_pred CCCCCccc-Cc--HHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 57 PKQVKDVA-HQ--EEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 57 p~~~~~~~-g~--~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.+|+.++ |. ..+......+..... .+.++|||++|+||||+++++++++.... .+..++++++.+. ...+.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~f--~~~~~ 187 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDEF--ARKAV 187 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH--HHHHH
Confidence 56888887 32 334455555555422 23399999999999999999999774211 1245566655431 11111
Q ss_pred HHH-------HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecCcc----c
Q 016800 132 TKI-------KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----R 197 (382)
Q Consensus 132 ~~l-------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~~~----~ 197 (382)
..+ ..+... + ....+++|||++.+. ...++.|+.++..... ...+|++++.+. .
T Consensus 188 ~~l~~~~~~~~~~~~~----------~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~ 255 (450)
T PRK14087 188 DILQKTHKEIEQFKNE----------I--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNG 255 (450)
T ss_pred HHHHHhhhHHHHHHHH----------h--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhh
Confidence 111 111110 0 145699999999986 5678888888876433 235777776542 3
Q ss_pred cchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--C---CC
Q 016800 198 IIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSSISQGDLRRAITYLQGAARLF--G---SS 267 (382)
Q Consensus 198 l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~--~---~~ 267 (382)
+.+.++||+. .+.+++|+.++..++|++.++..|. .+++++++.|++.++||+|.+.+.+..+..++ . ..
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~ 335 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKI 335 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCC
Confidence 5689999986 8999999999999999999988775 69999999999999999999999998886444 2 57
Q ss_pred CChhhHhhhhCC
Q 016800 268 ITSKDLISVSGV 279 (382)
Q Consensus 268 It~~~v~~~~~~ 279 (382)
||.+.+++++..
T Consensus 336 it~~~v~~~l~~ 347 (450)
T PRK14087 336 ITIEIVSDLFRD 347 (450)
T ss_pred CCHHHHHHHHhh
Confidence 999999888753
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-17 Score=144.09 Aligned_cols=198 Identities=22% Similarity=0.297 Sum_probs=140.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC------------CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA------------NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+++++-|-++.++.++..++-. .+|. +|+|||||||||.+|+++|++. +..|+.+.++..
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSEl 221 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSEL 221 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHHH
Confidence 37789989999999999887532 2233 9999999999999999999987 567777776542
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH-----hc
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME-----TY 182 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le-----~~ 182 (382)
.+..-+++.+ ..+... .+.||||||+|.+. .+.|--++++|. ++
T Consensus 222 VqKYiGEGaRlVRelF----~lArek----------aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 222 VQKYIGEGARLVRELF----ELAREK----------APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred HHHHhccchHHHHHHH----HHHhhc----------CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 1222333332 222211 56799999999883 356777777775 34
Q ss_pred CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCHHHH-HHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRA-ITYL 257 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~gdlr~a-~~~l 257 (382)
..++.+|++||.++-++|+|.+ |+. .|+|+.|+.+....+++-...+..+ .+ -.++.|+..++|--..- ...+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCchHHHHHHH
Confidence 6789999999999999999998 555 8999999999999999887776553 33 33777888776543332 2344
Q ss_pred HHHHHhc----CCCCChhhHhhhh
Q 016800 258 QGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 258 ~~~~~~~----~~~It~~~v~~~~ 277 (382)
..+..++ ...+|.++..+++
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av 389 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAV 389 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHH
Confidence 4444444 3567777665544
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=143.40 Aligned_cols=188 Identities=17% Similarity=0.190 Sum_probs=135.7
Q ss_pred CCCcccC---cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 59 QVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 59 ~~~~~~g---~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
+|++++. +..+...+.++. ....+.++|+||+|+||||+++++++.. ....++..+ ...+ .+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~--------~~~~i~~~~-~~~~----~~~ 84 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS--------DALLIHPNE-IGSD----AAN 84 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc--------CCEEecHHH-cchH----HHH
Confidence 7888884 344556555544 2233449999999999999999998764 112233221 1111 111
Q ss_pred HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc----ccchhhhccc---c
Q 016800 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASRC---A 207 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~----~l~~~l~sr~---~ 207 (382)
.. ...+|+|||++.+. ..+..|+.++..... ...+|++++... ...+.++||+ .
T Consensus 85 ~~-----------------~~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl 146 (226)
T PRK09087 85 AA-----------------AEGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT 146 (226)
T ss_pred hh-----------------hcCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCc
Confidence 10 12489999999875 235678888865443 455777776432 2468899999 6
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhhC
Q 016800 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~~ 278 (382)
++++++|+.++...++++.++..++.++++++++|++.++|+++.++..+..+..++ +..||...+++++.
T Consensus 147 ~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 147 VVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998777665443 67899888887764
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=146.31 Aligned_cols=190 Identities=22% Similarity=0.201 Sum_probs=135.5
Q ss_pred CcccCcHHHHHHHHHHHH----------cC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceEEeecCCC
Q 016800 61 KDVAHQEEVVRVLTNTLE----------TA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~----------~~-----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~-~~~~~~~~~~~~ 124 (382)
++++|.+++++.+..+.. .| ...|++|+||||||||++|+++++.+...+.. ...++++++++.
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 368999888877755431 11 11259999999999999999999988543322 224666665332
Q ss_pred cch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 125 RGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 125 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.+. ......+....... ...+++|||++.+ +.+.++.|++.|++....+++|++++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-------------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~ 168 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGY 168 (284)
T ss_pred hHhhcccchHHHHHHHHHc-------------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 110 00000111111111 2359999999987 35568899999998887887777765
Q ss_pred Cc--c---ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHH
Q 016800 194 YI--S---RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQG 259 (382)
Q Consensus 194 ~~--~---~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~gdlr~a~~~l~~ 259 (382)
.. + .+.+.+++|+. .+.|++++.+++..++...+++.+..+++++...+... ..||.|.+.+.++.
T Consensus 169 ~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~ 248 (284)
T TIGR02880 169 KDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDR 248 (284)
T ss_pred cHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 32 2 24689999997 89999999999999999999998888999998888765 36999999999998
Q ss_pred HHHh
Q 016800 260 AARL 263 (382)
Q Consensus 260 ~~~~ 263 (382)
+...
T Consensus 249 ~~~~ 252 (284)
T TIGR02880 249 ARLR 252 (284)
T ss_pred HHHH
Confidence 8754
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-17 Score=140.54 Aligned_cols=181 Identities=16% Similarity=0.163 Sum_probs=152.6
Q ss_pred eEEEEee--cCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 016800 186 TRFFFIC--NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE------GLNLDAEALSTLSSISQGDLRRAITYL 257 (382)
Q Consensus 186 ~~~Il~~--~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~s~gdlr~a~~~l 257 (382)
..+|-+| |+.+.+.++|+|||+++.|++++.+++..+|++.+..+ .+.+++++++.|++.++||.|.++|.|
T Consensus 9 i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~L 88 (300)
T PRK14700 9 IILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLL 88 (300)
T ss_pred EEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444444 56678999999999999999999999999999988752 367899999999999999999999999
Q ss_pred HHHHHhc--CC--CCChhhHhhhh----------CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 016800 258 QGAARLF--GS--SITSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFD 323 (382)
Q Consensus 258 ~~~~~~~--~~--~It~~~v~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~ 323 (382)
+.+.... .. .||.+.+++++ +..+++.++.++++++..|.++|+-|+.+|+..|++|..|.++|..
T Consensus 89 E~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii 168 (300)
T PRK14700 89 ERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLC 168 (300)
T ss_pred HHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9866532 12 39999998877 3467889999999999999999999999999999999999999987
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-HHHHHHHHHHHH
Q 016800 324 VVVETEDISDEQQARICKCLAEVDKCLVDGADE-YLQLLDVASNVI 368 (382)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~l~l~~l~~~l~ 368 (382)
...+ +++.+....+....+.++.....|.++ ++.|...++-++
T Consensus 169 ~AsE--DIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA 212 (300)
T PRK14700 169 IASE--DIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLA 212 (300)
T ss_pred HHHh--hccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 6665 888888777788888888888899855 677777766665
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-16 Score=147.95 Aligned_cols=214 Identities=18% Similarity=0.184 Sum_probs=148.2
Q ss_pred hhhcCC-CCCCcccC-c--HHHHHHHHHHHHc-CCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 52 VEKYRP-KQVKDVAH-Q--EEVVRVLTNTLET-ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 52 ~~k~~p-~~~~~~~g-~--~~~~~~l~~~l~~-~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.-.+.| .+|++|+. . .........++.. +...+ ++|||++|+|||||++++++++... .....++++++.+..
T Consensus 278 ~a~L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yitaeef~ 356 (617)
T PRK14086 278 TARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSSEEFT 356 (617)
T ss_pred cCCCCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHH
Confidence 333444 47888873 2 2233344444443 22223 9999999999999999999987421 112455666654321
Q ss_pred c--hHHHHH-HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCC-ceEEEEeecCc----
Q 016800 126 G--INVVRT-KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI---- 195 (382)
Q Consensus 126 ~--~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~-~~~~Il~~~~~---- 195 (382)
. ...++. .+..|... +. ...+|+|||++.+.. ..+..|+.+++.... ...+|++++..
T Consensus 357 ~el~~al~~~~~~~f~~~----------y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 357 NEFINSIRDGKGDSFRRR----------YR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred HHHHHHHHhccHHHHHHH----------hh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 0 011111 11111110 00 456999999999843 446788888886544 34577777754
Q ss_pred cccchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCC
Q 016800 196 SRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSIT 269 (382)
Q Consensus 196 ~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It 269 (382)
..+.+.|+||+. ++.+.+|+.+....+|++.+...++.++++++++|+....+|+|.+...|..+..++ +..||
T Consensus 425 ~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~it 504 (617)
T PRK14086 425 VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVD 504 (617)
T ss_pred hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 246788999986 899999999999999999999999999999999999999999999999888876554 57799
Q ss_pred hhhHhhhhC
Q 016800 270 SKDLISVSG 278 (382)
Q Consensus 270 ~~~v~~~~~ 278 (382)
.+.+++++.
T Consensus 505 l~la~~vL~ 513 (617)
T PRK14086 505 LGLTEIVLR 513 (617)
T ss_pred HHHHHHHHH
Confidence 888877664
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-16 Score=147.92 Aligned_cols=206 Identities=16% Similarity=0.190 Sum_probs=145.3
Q ss_pred CCCccc-C--cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 59 QVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+|++++ | +..+......+..... ...++||||+|+||||+++++++++.... ....++++++.+. ...+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~--~~~~~~~ 196 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKF--TNDFVNA 196 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH--HHHHHHH
Confidence 777766 3 3445566666665432 23399999999999999999999985332 1245566665432 1111111
Q ss_pred HH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCC-ceEEEEeecCc-c---ccchh
Q 016800 134 IK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI-S---RIIEP 201 (382)
Q Consensus 134 l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~-~~~~Il~~~~~-~---~l~~~ 201 (382)
+. .+... .. ...+|+|||++.+.. ..+..|+.+++.... ...+|++++.+ . .+.+.
T Consensus 197 ~~~~~~~~~~~~-~~-----------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 197 LRNNTMEEFKEK-YR-----------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHcCcHHHHHHH-Hh-----------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 11 11110 00 346999999999853 356778887765432 23466666653 2 26688
Q ss_pred hhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhh
Q 016800 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (382)
Q Consensus 202 l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~ 275 (382)
++||+. .+.|++|+.++...+|+..+...++.+++++++.|++.++||+|.+...|..+..++ +..||.+.+++
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~ 344 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKE 344 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 999995 899999999999999999999989999999999999999999999888888776554 67799988888
Q ss_pred hhCC
Q 016800 276 VSGV 279 (382)
Q Consensus 276 ~~~~ 279 (382)
++..
T Consensus 345 ~l~~ 348 (450)
T PRK00149 345 ALKD 348 (450)
T ss_pred HHHH
Confidence 7753
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=162.64 Aligned_cols=206 Identities=17% Similarity=0.202 Sum_probs=153.0
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~ 123 (382)
..+++++.||..+++++|+++.+..+...+...+.++++|+||||||||++++.+++.+.... ..+..++.++...
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 357888899999999999999999999888888888999999999999999999999874321 2233445444432
Q ss_pred C----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEe
Q 016800 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 124 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
. .....+.+.++.......... ...|++|||+|.+.. ++.|.|...++. +...+|.+
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~~~---------~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Iga 322 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKASP---------QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAA 322 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcC---------CCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEe
Confidence 1 123333344444333221111 457999999999953 344568788775 45667777
Q ss_pred ecCc-----cccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHH
Q 016800 192 CNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITY 256 (382)
Q Consensus 192 ~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g------dlr~a~~~ 256 (382)
|+.. ..+.++|.+||+.|.+++|+.++...+|+.+... .++.++++++..++..+.+ -|.+|+.+
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdl 402 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSL 402 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHH
Confidence 7653 3478999999999999999999999997665543 4678999999999998853 48889999
Q ss_pred HHHHHHhc
Q 016800 257 LQGAARLF 264 (382)
Q Consensus 257 l~~~~~~~ 264 (382)
++.++...
T Consensus 403 ldea~a~~ 410 (852)
T TIGR03345 403 LDTACARV 410 (852)
T ss_pred HHHHHHHH
Confidence 99887543
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-15 Score=144.45 Aligned_cols=207 Identities=15% Similarity=0.180 Sum_probs=144.1
Q ss_pred CCCCccc-Cc--HHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 58 KQVKDVA-HQ--EEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
.+|++++ |. ..+......+..+.. ..+++||||+|+||||+++++++++.... ....+.++++.+. ...+...
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f--~~~~~~~ 178 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKF--LNDLVDS 178 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH--HHHHHHH
Confidence 3788877 43 333345555554332 23499999999999999999999874322 1235666665431 1111111
Q ss_pred H-----HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecC-cc---ccchh
Q 016800 134 I-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNY-IS---RIIEP 201 (382)
Q Consensus 134 l-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~-~~---~l~~~ 201 (382)
+ ..|..... ....+++|||++.+. ...+..|+.++..... ...+|++++. +. .+.+.
T Consensus 179 ~~~~~~~~f~~~~~-----------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKEGKLNEFREKYR-----------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred HhcccHHHHHHHHH-----------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 1 11111100 035699999999874 3346677777765432 2356666653 32 36688
Q ss_pred hhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhh
Q 016800 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (382)
Q Consensus 202 l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~ 275 (382)
++||+. .+.+++|+.++...++++.++..++.+++++++.|++.+.||+|.+...+..+..++ +..||.+.+.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~ 327 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAIL 327 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999987 899999999999999999999999999999999999999999999999888876554 67899988877
Q ss_pred hhC
Q 016800 276 VSG 278 (382)
Q Consensus 276 ~~~ 278 (382)
++.
T Consensus 328 ~L~ 330 (440)
T PRK14088 328 LLK 330 (440)
T ss_pred HHH
Confidence 664
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=150.59 Aligned_cols=207 Identities=15% Similarity=0.225 Sum_probs=146.6
Q ss_pred cCC-CCCCccc-Cc--HHHHHHHHHHHHc-----CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 55 YRP-KQVKDVA-HQ--EEVVRVLTNTLET-----AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 55 ~~p-~~~~~~~-g~--~~~~~~l~~~l~~-----~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+.| .+|++++ |. ..+......+... +. ..+++||||+|+||||+++++++.+... ...++++++.+.
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f 180 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELF 180 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHH
Confidence 445 4888887 43 3233455555432 11 2349999999999999999999998543 245555554321
Q ss_pred cchHHHHHHHH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhc-CCceEEEEeecCc-
Q 016800 125 RGINVVRTKIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETY-SKVTRFFFICNYI- 195 (382)
Q Consensus 125 ~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~- 195 (382)
...+...+. .+... + ....+++|||++.+.. ..++.|+.++... .....+|++++.+
T Consensus 181 --~~~~~~~l~~~~~~~f~~~----------~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p 246 (445)
T PRK12422 181 --TEHLVSAIRSGEMQRFRQF----------Y--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP 246 (445)
T ss_pred --HHHHHHHHhcchHHHHHHH----------c--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence 111111111 11100 0 1456999999999853 4577888877643 2334677877653
Q ss_pred ---cccchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH---Hhc--
Q 016800 196 ---SRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA---RLF-- 264 (382)
Q Consensus 196 ---~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~---~~~-- 264 (382)
..+.+.++||+. .+.+++|+.++...+|++.++..++.+++++++.|+....||+|.+.+.+..++ .++
T Consensus 247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~ 326 (445)
T PRK12422 247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKL 326 (445)
T ss_pred HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 346789999994 899999999999999999999999999999999999999999999999999885 332
Q ss_pred -CCCCChhhHhhhhC
Q 016800 265 -GSSITSKDLISVSG 278 (382)
Q Consensus 265 -~~~It~~~v~~~~~ 278 (382)
+..||.+.+++++.
T Consensus 327 ~~~~i~~~~~~~~l~ 341 (445)
T PRK12422 327 SHQLLYVDDIKALLH 341 (445)
T ss_pred hCCCCCHHHHHHHHH
Confidence 56799998887764
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.4e-16 Score=145.95 Aligned_cols=206 Identities=16% Similarity=0.196 Sum_probs=142.3
Q ss_pred CCCCccc-Cc--HHHHHHHHHHHHcCC-C-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVA-HQ--EEVVRVLTNTLETAN-C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~~~-~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
.+|++++ |. ..+......+..... . ..++||||+|+|||++++++++++.... ....++++++.+.. ..+..
T Consensus 107 ~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~--~~~~~ 183 (405)
T TIGR00362 107 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFT--NDFVN 183 (405)
T ss_pred CcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHH--HHHHH
Confidence 3677754 53 223445555555422 2 2389999999999999999999885321 12456666654311 11111
Q ss_pred HH-----HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcC-CceEEEEeecCc----cccch
Q 016800 133 KI-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI----SRIIE 200 (382)
Q Consensus 133 ~l-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~-~~~~~Il~~~~~----~~l~~ 200 (382)
.+ ..+... .. ...+|+|||++.+.. ..+..|+.+++... ....+|++++.. ..+.+
T Consensus 184 ~~~~~~~~~~~~~-~~-----------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 184 ALRNNKMEEFKEK-YR-----------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEE 251 (405)
T ss_pred HHHcCCHHHHHHH-HH-----------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhh
Confidence 11 111110 00 346999999998853 35677888877542 234577777643 23568
Q ss_pred hhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHh
Q 016800 201 PLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLI 274 (382)
Q Consensus 201 ~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~ 274 (382)
.++||+. .+.|++|+.++...+|+..++..++.+++++++.|++...||+|.+...+..+..++ +..||.+.++
T Consensus 252 ~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~ 331 (405)
T TIGR00362 252 RLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAK 331 (405)
T ss_pred hhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 8999985 799999999999999999999999999999999999999999999887777766554 6789988887
Q ss_pred hhhC
Q 016800 275 SVSG 278 (382)
Q Consensus 275 ~~~~ 278 (382)
+++.
T Consensus 332 ~~L~ 335 (405)
T TIGR00362 332 EALK 335 (405)
T ss_pred HHHH
Confidence 7664
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-16 Score=136.81 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=103.6
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------------CccccchhhhcccceEEecCCCHHHHHHHH
Q 016800 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 156 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
+.|+||||+|.|.-++...|-+.||+.-.. .+|++|| .|+.++..+..|.-++...|++.++++.++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 359999999999999999999999986544 4677765 356688999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
+.+++.+++.++++++++++... ..++|.++++|.-+...+ +..|..++|+++.
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 99999999999999999999876 578999999998655444 4578888887764
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=150.89 Aligned_cols=201 Identities=23% Similarity=0.232 Sum_probs=134.4
Q ss_pred CCCCCcccCcHHHHHHHHHHHH-----------cCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLE-----------TANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~-----------~~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+.+|+|+.|.++++..+..++. ....| ++||+||||||||+++++++... ...++.+++.+.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~ 124 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDF 124 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccHHHH
Confidence 4589999999999877766553 12333 39999999999999999999987 344555555431
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcC-
Q 016800 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (382)
Q Consensus 125 ~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~- 183 (382)
. ....++..+.. .... .+.||+|||+|.+.. ...+.|+..|+...
T Consensus 125 ~~~~~g~~~~~l~~~f~~----a~~~----------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQ----AKKN----------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred HHHHhcccHHHHHHHHHH----HHhc----------CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 1 11222322222 1111 446999999998742 23455666666433
Q ss_pred -CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 016800 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 184 -~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
..+.+|.+||.++.+.+++.+ |+. .+.++.|+.++..++++..+...... ++..+..++..+.| +.+++.+++.
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHH
Confidence 356788888999999999987 565 79999999999999998877654432 33456677777654 3344444444
Q ss_pred HHHHhc----CCCCChhhHhhhhC
Q 016800 259 GAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~~~ 278 (382)
.++..+ ...|+.+++..++.
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHH
Confidence 443322 45699999887764
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-16 Score=146.46 Aligned_cols=203 Identities=18% Similarity=0.141 Sum_probs=136.2
Q ss_pred CCCCcccCcHHHHHHHHHHHH--------cC-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE--------TA-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-- 125 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~--------~~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-- 125 (382)
.+|+++.|.+.+++.+..... .| ..|. +||+||||||||.+|+++++++ +..++.+++....
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLFGG 298 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhccc
Confidence 578999999888877665321 12 2233 9999999999999999999997 3556666654211
Q ss_pred ----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHHHhcCCceEEE
Q 016800 126 ----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYSKVTRFF 189 (382)
Q Consensus 126 ----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~~~~~~I 189 (382)
+...++..+.. .... .+.||+|||+|.+.. ...+.|+..|++....+.+|
T Consensus 299 ~vGese~~l~~~f~~----A~~~----------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 299 IVGESESRMRQMIRI----AEAL----------SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred ccChHHHHHHHHHHH----HHhc----------CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 11223333322 1111 456999999997632 12345667777766677788
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhcC----CCHHHHHHHHHHHH
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSISQ----GDLRRAITYLQGAA 261 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~s~----gdlr~a~~~l~~~~ 261 (382)
.+||.++.+++++.+ |+. .+.++.|+.++..++++..+++.+.. .++..++.+++.+. +|+..+.......+
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A 444 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIA 444 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 889999999999976 776 78999999999999999888775432 23455777887764 45555444433333
Q ss_pred HhcCCCCChhhHhhhhCCC
Q 016800 262 RLFGSSITSKDLISVSGVI 280 (382)
Q Consensus 262 ~~~~~~It~~~v~~~~~~~ 280 (382)
...+..++.+++..++...
T Consensus 445 ~~~~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 445 FYEKREFTTDDILLALKQF 463 (489)
T ss_pred HHcCCCcCHHHHHHHHHhc
Confidence 3335677877776666443
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-16 Score=135.13 Aligned_cols=191 Identities=19% Similarity=0.247 Sum_probs=128.7
Q ss_pred CCCCccc-C--cHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVA-H--QEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
.+|+.++ | ++.+............. ..++||||+|+||||+++++++++.... .+..++++++.+. ...+..
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~~~~f--~~~~~~ 81 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLSAEEF--IREFAD 81 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEEHHHH--HHHHHH
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeecHHHH--HHHHHH
Confidence 3788886 4 45555666666555333 2389999999999999999999874321 1345666665431 111111
Q ss_pred HH-----HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhcC-CceEEEEeecC-cc---ccch
Q 016800 133 KI-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALRRTMETYS-KVTRFFFICNY-IS---RIIE 200 (382)
Q Consensus 133 ~l-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~Ll~~le~~~-~~~~~Il~~~~-~~---~l~~ 200 (382)
.+ ..+... .. ...+++||+++.+... .+..|+.+++... ....+|++++. |. .+.+
T Consensus 82 ~~~~~~~~~~~~~-~~-----------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRDGEIEEFKDR-LR-----------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHTTSHHHHHHH-HC-----------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHcccchhhhhh-hh-----------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 11 111111 11 5579999999999754 4888888888642 23457777743 33 3668
Q ss_pred hhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016800 201 PLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (382)
Q Consensus 201 ~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~ 263 (382)
.++||+. .+.+.+|+.++...++++.+...|+.+++++++.|++...+|+|.+...++.+..+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 8999976 89999999999999999999999999999999999999999999999999888764
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=142.63 Aligned_cols=203 Identities=21% Similarity=0.251 Sum_probs=130.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+++++.|.+..++.+...+.. ....++||+||||||||++|+++++.+. ..++.+++.+.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l 201 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSEL 201 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHH
Confidence 4678999999999888877632 1223499999999999999999999873 44566665432
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc-----CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-----SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~-----~~~~ 186 (382)
.. .......+.......... .+.||+|||+|.+. ...+..+..++.+. ...+
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~----------~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 271 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREK----------APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNV 271 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhc----------CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCE
Confidence 11 001111222222221111 45699999999883 34455566665432 2467
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~ 262 (382)
.+|++||.++.+.+++.+ |+. .+.|++|+.++..++++..++...+. .+-.+..++..+.| ..+.+..++..++.
T Consensus 272 ~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~ 350 (389)
T PRK03992 272 KIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGM 350 (389)
T ss_pred EEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 889999999999999986 666 79999999999999998877654432 11335667776644 23333334444443
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
.+ ...|+.+++.+++
T Consensus 351 ~a~~~~~~~i~~~d~~~A~ 369 (389)
T PRK03992 351 FAIRDDRTEVTMEDFLKAI 369 (389)
T ss_pred HHHHcCCCCcCHHHHHHHH
Confidence 32 2456666665544
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-15 Score=147.30 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=135.4
Q ss_pred CCCCcccCcHHHHHHHHHHHH---cC--------CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE---TA--------NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~---~~--------~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.+|+|+.|.++.++.+...+. .. ..| ++||+||||||||++|++++.+. ...++.+++++..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is~s~f~ 253 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSISGSEFV 253 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeeeccHHHHH
Confidence 588999999988877766642 11 222 49999999999999999999987 3445555554321
Q ss_pred ch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------H---HHHHHHHHHHhc--CCceE
Q 016800 126 GI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------D---AQNALRRTMETY--SKVTR 187 (382)
Q Consensus 126 ~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~---~~~~Ll~~le~~--~~~~~ 187 (382)
.. ..-...+..+....... .+.||+|||+|.+.. . ..+.|+..++.. ...+.
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~----------~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKEN----------SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcC----------CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 10 00011122222221111 456999999998832 2 234445445443 24567
Q ss_pred EEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHh
Q 016800 188 FFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAARL 263 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~~ 263 (382)
+|.+||.++.+.+++.+ |+. .+.|++|+.++...+++..++.... .++..+..+++.+.| +.+++.+++..++..
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~ 402 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAIL 402 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 88888999999999987 444 8999999999999999998876432 345567888888776 555555555555433
Q ss_pred c----CCCCChhhHhhhhC
Q 016800 264 F----GSSITSKDLISVSG 278 (382)
Q Consensus 264 ~----~~~It~~~v~~~~~ 278 (382)
+ ...|+.+++.+++.
T Consensus 403 a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 403 TARRKKATITMKEIDTAID 421 (638)
T ss_pred HHHhCCCCcCHHHHHHHHH
Confidence 2 35689998888764
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-15 Score=138.30 Aligned_cols=203 Identities=20% Similarity=0.223 Sum_probs=129.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+.+++.+...+.. | .+.++||+||||||||++++++++.+. ..++.+.+...
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~~s~l 215 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVVGSEF 215 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehHHH
Confidence 4889999999999888876631 1 122399999999999999999999872 34455544321
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHH---Hhc--CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM---ETY--SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~l---e~~--~~~~ 186 (382)
.. ...-...+.......... .+.||+|||+|.+. ...+..+..++ +.. ..++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~----------~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLAREN----------APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhc----------CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 00 001111122222111111 55799999999763 12333444444 432 3467
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~ 262 (382)
.+|++||.++.+++++.+ |+. .+.|++|+.++...+++..+.+.+.. .+-.+..++..+.| +...+.++++.++.
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~ 364 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGM 364 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 789999999999999876 665 79999999999999998877665543 22235666766643 44555555555554
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
.+ ...|+.+++.+++
T Consensus 365 ~A~r~~~~~i~~~df~~A~ 383 (398)
T PTZ00454 365 QAVRKNRYVILPKDFEKGY 383 (398)
T ss_pred HHHHcCCCccCHHHHHHHH
Confidence 33 2456666665543
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=141.46 Aligned_cols=209 Identities=19% Similarity=0.210 Sum_probs=131.3
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
+.++..+.+|+|+.|.+..++.+..++.. + ...++||+||||||||++|+++++.+. ..++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi 246 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------ATFL 246 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CCEE
Confidence 45556567999999999999988887742 1 222499999999999999999999873 3455
Q ss_pred EeecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHH---Hh
Q 016800 118 ELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM---ET 181 (382)
Q Consensus 118 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~l---e~ 181 (382)
.+.+++... .......+.......... .+.||+|||+|.+. ...+..++.++ +.
T Consensus 247 ~V~~seL~~k~~Ge~~~~vr~lF~~A~~~----------~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 247 RVVGSELIQKYLGDGPKLVRELFRVAEEN----------APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred EEecchhhhhhcchHHHHHHHHHHHHHhC----------CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 555543211 001111122222211111 45699999998763 12334444444 32
Q ss_pred --cCCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcC-CCHHHHH
Q 016800 182 --YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQ-GDLRRAI 254 (382)
Q Consensus 182 --~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~-gdlr~a~ 254 (382)
....+.+|++||.++.+.+.+.+ |+. .+.|++|+.++...++.....+..+ +++ .+..++..+. -+...+.
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~sgAdI~ 394 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELSGADIK 394 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCCHHHHH
Confidence 23467889999999999999875 665 8999999999999999887765443 322 3455554442 2333333
Q ss_pred HHHHHHHHhc----CCCCChhhHhhhh
Q 016800 255 TYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 255 ~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
.++..++..+ ...|+.+++..+.
T Consensus 395 ~i~~eA~~~Alr~~r~~Vt~~D~~~A~ 421 (438)
T PTZ00361 395 AICTEAGLLALRERRMKVTQADFRKAK 421 (438)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 3444444333 3567777776654
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=134.57 Aligned_cols=104 Identities=25% Similarity=0.293 Sum_probs=80.2
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------------CccccchhhhcccceEEecCCCHHHHHHHH
Q 016800 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 156 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
+.|++|||+|.|+.++...|-+.+|..-.. .+|++|| .++.++..+.+||.++...|++.+|+++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 359999999999999999999999976544 4677776 345678899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 016800 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGA 260 (382)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~ 260 (382)
.-+|+.+++.+++++++.+.... ..++|.|++++.-+
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 99999999999999999998765 56899999998754
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=153.91 Aligned_cols=182 Identities=21% Similarity=0.273 Sum_probs=125.1
Q ss_pred cccCcHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH---
Q 016800 62 DVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT--- 132 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 132 (382)
+++|++++++.+..++.. .+.++++|+||||||||++|+++++.+. ..+..++.........+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~------~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN------RKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc------CCeEEEeCCCcccHHHHcCCCC
Confidence 578999999988876642 2345699999999999999999999983 3445554433211111110
Q ss_pred --------H-HHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHHhc---------------CC
Q 016800 133 --------K-IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETY---------------SK 184 (382)
Q Consensus 133 --------~-l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~----~~~~Ll~~le~~---------------~~ 184 (382)
. ...+... . ....|++|||+|.++++ ..++|+..++.. ..
T Consensus 395 ~~~g~~~g~i~~~l~~~-~-----------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKA-K-----------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred ceeCCCCchHHHHHHHh-C-----------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 0 0111100 0 13359999999999754 347888888731 13
Q ss_pred ceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHH-----HHh-----CCCCCHHHHHHHHHhcC--CCHHH
Q 016800 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEE-----GLNLDAEALSTLSSISQ--GDLRR 252 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~~~~~~~~~l~~~s~--gdlr~ 252 (382)
++.||+++|..+.+.+++++|+.++.|++++.++...+++..+ +.. ++.++++++..|++... ...|.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred CEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 5778899999999999999999999999999999988887644 222 35689999999987442 34555
Q ss_pred HHHHHHHHH
Q 016800 253 AITYLQGAA 261 (382)
Q Consensus 253 a~~~l~~~~ 261 (382)
+...++..+
T Consensus 543 l~r~i~~~~ 551 (775)
T TIGR00763 543 LERQIEKIC 551 (775)
T ss_pred HHHHHHHHH
Confidence 555554444
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-15 Score=138.68 Aligned_cols=185 Identities=23% Similarity=0.259 Sum_probs=130.6
Q ss_pred CCCCcccCcHHHHHHHHHHHH-----------cC-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE-----------TA-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
-+|+|+-|+++++..++..+. -| ..| .+|||||||||||++|++++++. ..+|+.+.+++.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsvkgpEL 504 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSVKGPEL 504 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeeccCHHH
Confidence 478999999999999987663 23 223 39999999999999999999987 456777766542
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc--CCc
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY--SKV 185 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~--~~~ 185 (382)
.+...+++.+....+. ...|+++||+|.+.. ...+.|+.-|+.. ..+
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~--------------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQV--------------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhc--------------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 1223444443332221 347999999998843 2345666666643 346
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGA 260 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~ 260 (382)
+.+|..||.++.+++++.+ |+. .+.+++|+.+...++++..+++ .+++++ .++.|++.+.| +-..+..+++.+
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVCQEA 648 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHHHHH
Confidence 6677788999999999999 776 8899999999999999877765 445555 57888886644 233344555555
Q ss_pred HHhc
Q 016800 261 ARLF 264 (382)
Q Consensus 261 ~~~~ 264 (382)
+..+
T Consensus 649 ~~~a 652 (693)
T KOG0730|consen 649 ALLA 652 (693)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-14 Score=128.19 Aligned_cols=221 Identities=16% Similarity=0.186 Sum_probs=137.1
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
....||.....|..|-.-.++..+...+...+..+ .+.++|+||+|+|||++++.+++.+.+... .+..+......
T Consensus 8 l~~~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~---~~~~~~~~~~~ 83 (269)
T TIGR03015 8 FTTKPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERV---VAAKLVNTRVD 83 (269)
T ss_pred CCCCCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe---EEeeeeCCCCC
Confidence 34556666555544333334555666666555543 224899999999999999999998743211 11111111110
Q ss_pred chHHHHH-------------------HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---C
Q 016800 126 GINVVRT-------------------KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---S 183 (382)
Q Consensus 126 ~~~~~~~-------------------~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---~ 183 (382)
..+.+.. .+..+..... ..++..+++|||++.++....+.|..+.+.. .
T Consensus 84 ~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~ 154 (269)
T TIGR03015 84 AEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF---------AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNA 154 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH---------hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCC
Confidence 1111111 1111111100 1225679999999999988877776554421 2
Q ss_pred CceEEEEeecCcc--c----cchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHhcCCCHHH
Q 016800 184 KVTRFFFICNYIS--R----IIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEG----LNLDAEALSTLSSISQGDLRR 252 (382)
Q Consensus 184 ~~~~~Il~~~~~~--~----l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~s~gdlr~ 252 (382)
..+.+++++.... . -...+.+|.. .+.+++++.+++..++...+...| ..+++++++.|++.++|++|.
T Consensus 155 ~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~ 234 (269)
T TIGR03015 155 KLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL 234 (269)
T ss_pred CeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH
Confidence 2334566654321 1 1345777754 789999999999999999887655 358999999999999999999
Q ss_pred HHHHHHHHHHhc----CCCCChhhHhhhhCC
Q 016800 253 AITYLQGAARLF----GSSITSKDLISVSGV 279 (382)
Q Consensus 253 a~~~l~~~~~~~----~~~It~~~v~~~~~~ 279 (382)
+..++..+...+ ...|+.++|+.++..
T Consensus 235 i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 235 INILCDRLLLSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 766666654432 467888888776643
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=136.10 Aligned_cols=180 Identities=22% Similarity=0.249 Sum_probs=130.8
Q ss_pred CCCcccCcHHHHHHHHHHHHc----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-
Q 016800 59 QVKDVAHQEEVVRVLTNTLET----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR- 125 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~- 125 (382)
.|+++-|.++.+..|...+.. | .+|. +|||||||||||.+|++++.++ ..+++.++++...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApeivS 261 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEIVS 261 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhhhc
Confidence 488999999999888776632 2 2223 9999999999999999999998 5677777775421
Q ss_pred -----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHHHhcC------
Q 016800 126 -----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----------AQNALRRTMETYS------ 183 (382)
Q Consensus 126 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~Ll~~le~~~------ 183 (382)
+...+++.+.. +... .+.|+||||+|.+++. ....|+..|++..
T Consensus 262 GvSGESEkkiRelF~~----A~~~----------aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQ----AKSN----------APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ccCcccHHHHHHHHHH----Hhcc----------CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 23344444433 3222 5679999999999753 2346777777543
Q ss_pred CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016800 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~ 259 (382)
..+.+|.+||.|+.+.++|++ |+. .|.+.-|+.....++|..+|+...+.- +=....|+..+.|-++.-+..|..
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHH
Confidence 456778889999999999998 555 799999999999999999998655432 223677888887766655544433
|
|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=123.11 Aligned_cols=129 Identities=18% Similarity=0.137 Sum_probs=109.3
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
.++..+++++++.+......+. ..+ +||+++|.|+..++|+|++++|+||.++.||++|+.+.++++
T Consensus 33 ~~~~i~Vd~iReii~~~~~~~~------------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llp 99 (206)
T PRK08485 33 IKEEFKIEDAKEVIAEAYIAES------------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLP 99 (206)
T ss_pred CCCCCCHHHHHHHHHHHhhCCC------------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCch
Confidence 4446789999998777543321 334 457899999999999999999999999999999999999999
Q ss_pred hhhcccce-------------EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016800 201 PLASRCAK-------------FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (382)
Q Consensus 201 ~l~sr~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~ 263 (382)
||+|||+. +.|++++.+++.++|.. .+++++...+++.+.|+..+.|.+|.++.+.++...+
T Consensus 100 TI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 100 TIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEY 174 (206)
T ss_pred HHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 99999986 78999999999999998 6777887788889999999999999988777665543
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=148.11 Aligned_cols=205 Identities=19% Similarity=0.223 Sum_probs=149.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD 124 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~~ 124 (382)
.++.++.+|..++.++|+++.+..+...+.....++++|+||||+|||+++..++..+.... ..+..++.++....
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 57889999999999999999999999988888888899999999999999999999874321 12344555543221
Q ss_pred ----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEee
Q 016800 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 125 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
.....+...+..+....... ++..|+||||+|.+.. ++++.|...++. ....+|.+|
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~~---------~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaT 309 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTKS---------EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGAT 309 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHhc---------CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeC
Confidence 11122233333333221111 1457999999998852 356777766653 456677777
Q ss_pred cCc-----cccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC---C---HHHHHHHH
Q 016800 193 NYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG---D---LRRAITYL 257 (382)
Q Consensus 193 ~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g---d---lr~a~~~l 257 (382)
+.. ..+.+++.+|++.+.++.|+.++...+|...... .++.++++++..++..+.+ | |.+|+.++
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 654 3468999999999999999999999998876554 3567889999999888743 3 88999999
Q ss_pred HHHHHhc
Q 016800 258 QGAARLF 264 (382)
Q Consensus 258 ~~~~~~~ 264 (382)
+.++...
T Consensus 390 d~a~a~~ 396 (852)
T TIGR03346 390 DEAAARI 396 (852)
T ss_pred HHHHHHH
Confidence 9988653
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=132.58 Aligned_cols=206 Identities=16% Similarity=0.231 Sum_probs=145.3
Q ss_pred CCCcccC---cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--chHHHH
Q 016800 59 QVKDVAH---QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVR 131 (382)
Q Consensus 59 ~~~~~~g---~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~ 131 (382)
+|++++. +.-+......+..... .+.++||||.|.||||++++++++...... +..++++...+.. .+..++
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-~a~v~y~~se~f~~~~v~a~~ 163 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP-NARVVYLTSEDFTNDFVKALR 163 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCC-CceEEeccHHHHHHHHHHHHH
Confidence 6676663 3344445555555432 233999999999999999999999854322 2345544443210 011111
Q ss_pred H-HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCce-EEEEeecCcc----ccchhhh
Q 016800 132 T-KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVT-RFFFICNYIS----RIIEPLA 203 (382)
Q Consensus 132 ~-~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~-~~Il~~~~~~----~l~~~l~ 203 (382)
+ .+..|-.. | ...+++|||++.+.. ..+..|+.++....... .+|++++.+. .+.+.++
T Consensus 164 ~~~~~~Fk~~----------y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~ 230 (408)
T COG0593 164 DNEMEKFKEK----------Y---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLR 230 (408)
T ss_pred hhhHHHHHHh----------h---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHH
Confidence 1 11111111 1 235999999999854 45888888887654332 5777775432 3568999
Q ss_pred cccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChhhHhhhh
Q 016800 204 SRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVS 277 (382)
Q Consensus 204 sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~~v~~~~ 277 (382)
||+. ++.+.||+.+....+|...+...++.++++++..++....+|+|.+...+..+..++ +..||.+.+.+++
T Consensus 231 SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L 310 (408)
T COG0593 231 SRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEIL 310 (408)
T ss_pred HHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHH
Confidence 9986 899999999999999999999999999999999999999999999999888887665 5689988888776
Q ss_pred C
Q 016800 278 G 278 (382)
Q Consensus 278 ~ 278 (382)
.
T Consensus 311 ~ 311 (408)
T COG0593 311 K 311 (408)
T ss_pred H
Confidence 4
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-15 Score=149.10 Aligned_cols=241 Identities=20% Similarity=0.236 Sum_probs=148.8
Q ss_pred CCCchHHHHhhccccccCCchhhhhcCCCCC----------CcccCcHHHHHHHHHHHHc------CCCCcEEEeCCCCC
Q 016800 30 PEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGT 93 (382)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~----------~~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~G~ 93 (382)
+...+-.+.|.+-.| ....||.. +.+..+ ++..|++++++.+..++.. .+.+.++|+||||+
T Consensus 283 ~~~~e~~~~~~yl~~-~~~~pw~~-~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~ 360 (784)
T PRK10787 283 PMSAEATVVRGYIDW-MVQVPWNA-RSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGV 360 (784)
T ss_pred CCCchHHHHHHHHHH-HHhCCCCC-CCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCC
Confidence 333444444444433 24478955 444332 3588999999988877753 24445999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC-CCCCCCCCCcEEEEEeCCCCCCHHH-
Q 016800 94 GKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDA- 171 (382)
Q Consensus 94 GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~vliiDe~d~l~~~~- 171 (382)
|||++++.+++.+ +.++..++.........++..-..+.....+... .... ......|++|||+|+++++.
T Consensus 361 GKTtl~~~ia~~l------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~ 433 (784)
T PRK10787 361 GKTSLGQSIAKAT------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred CHHHHHHHHHHHh------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccC
Confidence 9999999999987 3445555554433332222211111100000000 0000 00134599999999998764
Q ss_pred ---HHHHHHHHHhc---------------CCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHH-----
Q 016800 172 ---QNALRRTMETY---------------SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----- 228 (382)
Q Consensus 172 ---~~~Ll~~le~~---------------~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----- 228 (382)
+++|+.+++.. -.++.||+|+|.. .+.+++++|+.++.|.+++.++..++.+....
T Consensus 434 g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~ 512 (784)
T PRK10787 434 GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIE 512 (784)
T ss_pred CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHH
Confidence 58999999741 1456677777765 59999999999999999999999998877653
Q ss_pred Hh-----CCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHhc------C-----CCCChhhHhhhhCCC
Q 016800 229 EE-----GLNLDAEALSTLSSISQ--GDLRRAITYLQGAARLF------G-----SSITSKDLISVSGVI 280 (382)
Q Consensus 229 ~~-----~~~~~~~~~~~l~~~s~--gdlr~a~~~l~~~~~~~------~-----~~It~~~v~~~~~~~ 280 (382)
+. .+.++++++..|++.+. --.|.+...+++.+... + -.|+.+.+...++..
T Consensus 513 ~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 513 RNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 11 24588999999987441 12444444444433221 1 246677777776644
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=133.66 Aligned_cols=202 Identities=20% Similarity=0.218 Sum_probs=127.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
..++++.|.+..++.+...+... ...+++|+||||||||++|+++++.+. ..++.+.+.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~~~l 192 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSEL 192 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecchHHH
Confidence 47789999999999888876421 122399999999999999999999873 33444433221
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc-----CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-----SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~-----~~~~ 186 (382)
.. .......+......... ..+.||+|||+|.+. ...+..+..++... ..++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~----------~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v 262 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKE----------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNV 262 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHh----------cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCE
Confidence 00 00111112222211111 144699999999873 23344555555432 3467
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCH-HHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDL-RRAITYLQGAA 261 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~gdl-r~a~~~l~~~~ 261 (382)
.+|++||.++.+.+.+.+ |+. .+.|++|+.++..+++...+.... +++ -.+..+++.+.|-. +.+..++..++
T Consensus 263 ~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~--l~~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 263 KVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK--LAEDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred EEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC--CCccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999875 655 799999999999999987765433 222 23566777665432 23333333333
Q ss_pred Hhc----CCCCChhhHhhhh
Q 016800 262 RLF----GSSITSKDLISVS 277 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~ 277 (382)
..+ ...|+.+++..++
T Consensus 341 ~~a~~~~~~~i~~~d~~~a~ 360 (364)
T TIGR01242 341 MFAIREERDYVTMDDFIKAV 360 (364)
T ss_pred HHHHHhCCCccCHHHHHHHH
Confidence 322 3567777776654
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-14 Score=141.05 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=147.1
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCC---
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD--- 123 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~--- 123 (382)
++++-+-..++.++|+++.+..+.+.+.....++++|+||||||||++++.++..+...+ ..+..++.++...
T Consensus 176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla 255 (758)
T PRK11034 176 LNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 255 (758)
T ss_pred HHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc
Confidence 444446678899999999999999988887777899999999999999999998763322 1122333332211
Q ss_pred -CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEEEEeec
Q 016800 124 -DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 124 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
......+...+.......... +..|++|||+|.+- .+..+.|..+++. ....+|.+|+
T Consensus 256 G~~~~Ge~e~rl~~l~~~l~~~----------~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt 323 (758)
T PRK11034 256 GTKYRGDFEKRFKALLKQLEQD----------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTT 323 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhc----------CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCC
Confidence 111123333333322211111 44699999999871 2345566666654 4566777776
Q ss_pred Ccc-----ccchhhhcccceEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcC------CCHHHHHHHHH
Q 016800 194 YIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQ------GDLRRAITYLQ 258 (382)
Q Consensus 194 ~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s~------gdlr~a~~~l~ 258 (382)
... ...+++.+|++.+.+++|+.++...+|+.+.. .+++.++++++..+++.+. --|.+|+.+++
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlld 403 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 403 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHH
Confidence 543 46899999999999999999999999987654 3577899999998887763 34779999999
Q ss_pred HHHHhc--------CCCCChhhHhhhh
Q 016800 259 GAARLF--------GSSITSKDLISVS 277 (382)
Q Consensus 259 ~~~~~~--------~~~It~~~v~~~~ 277 (382)
.++... ...++.+++.+++
T Consensus 404 ea~a~~~~~~~~~~~~~v~~~~i~~v~ 430 (758)
T PRK11034 404 EAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_pred HHHHhhccCcccccccccChhhHHHHH
Confidence 887532 1235656665554
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=122.90 Aligned_cols=197 Identities=16% Similarity=0.179 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH---------HHHHHH
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR---------TKIKTF 137 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~ 137 (382)
..+++.+..++..+. +++|+||||||||++|+++++.+ +..++.+++........+- .....+
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHH
Confidence 445566666777654 69999999999999999999876 3455556554322211110 011111
Q ss_pred HHhhhcC-C-----CCCCCCC--CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC----------------CceEEEEeec
Q 016800 138 AAVAVGS-G-----QRRGGYP--CPPYKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFICN 193 (382)
Q Consensus 138 ~~~~~~~-~-----~~~~~~~--~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------------~~~~~Il~~~ 193 (382)
....... . ...+... .....+++|||+++++++.++.|+.+|++.. +..++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 1000000 0 0000000 0133599999999999999999999998531 3567888888
Q ss_pred Ccc-----ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc----------CCCHHHHHHHHH
Q 016800 194 YIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS----------QGDLRRAITYLQ 258 (382)
Q Consensus 194 ~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----------~gdlr~a~~~l~ 258 (382)
... .+.+.+.+||..+.++.|+.++..+++...+ .++++.++.+++.. .-.+|.++...+
T Consensus 160 ~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~ 234 (262)
T TIGR02640 160 PVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAE 234 (262)
T ss_pred CccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH
Confidence 652 4678899999999999999999999987643 35677776666543 112777777666
Q ss_pred HHHHhc-CCCCChhhHhhh
Q 016800 259 GAARLF-GSSITSKDLISV 276 (382)
Q Consensus 259 ~~~~~~-~~~It~~~v~~~ 276 (382)
.+.... ...++.+++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ 253 (262)
T TIGR02640 235 VATQQDIPVDVDDEDFVDL 253 (262)
T ss_pred HHHHcCCCCCCCcHHHHHH
Confidence 555443 233444444443
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-14 Score=120.45 Aligned_cols=121 Identities=25% Similarity=0.301 Sum_probs=101.8
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec-------------CccccchhhhcccceEEecCCCHHHHHHH
Q 016800 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN-------------YISRIIEPLASRCAKFRFKPLSEEVMSSR 222 (382)
Q Consensus 156 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~-------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 222 (382)
+.|++|||++.+.-+....|.+.+|.+-..+ +||++| .|+.+++.+..|..+++..++++++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 4599999999999999999999999876654 566664 34568899999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 223 VLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
++.+++.+++.++++++..+++.. ..++|.++++|.-+...+ ++.|..++|+++.
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 999999999999999999999865 678999999987544333 3578888876654
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=145.94 Aligned_cols=205 Identities=19% Similarity=0.191 Sum_probs=148.3
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~ 123 (382)
..+++++.+|..+++++|+++.+..+...+.....++++|+||||||||+++..++..+.... ..+..++.++...
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 357889999999999999999999999888888888899999999999999999999874321 1234555554432
Q ss_pred C----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEe
Q 016800 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 124 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
. .....+...++.......... ++.|+||||+|.+.. ++++.|...++. +...+|.+
T Consensus 245 l~ag~~~~g~~e~~lk~~~~~~~~~~---------~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~Iga 313 (857)
T PRK10865 245 LVAGAKYRGEFEERLKGVLNDLAKQE---------GNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGA 313 (857)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHcC---------CCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEc
Confidence 1 111223333333322211111 457999999999853 357888887764 35567777
Q ss_pred ecCcc-----ccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhc------CCCHHHHHHH
Q 016800 192 CNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSIS------QGDLRRAITY 256 (382)
Q Consensus 192 ~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s------~gdlr~a~~~ 256 (382)
|+... .+.+++.+||+.+.+..|+.++...+|+..... .++.++++++...+..+ .--+..|+.+
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~L 393 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDL 393 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHH
Confidence 76543 378999999999999999999999998776644 35678888888876666 3457778888
Q ss_pred HHHHHHh
Q 016800 257 LQGAARL 263 (382)
Q Consensus 257 l~~~~~~ 263 (382)
++.++..
T Consensus 394 iD~aaa~ 400 (857)
T PRK10865 394 IDEAASS 400 (857)
T ss_pred HHHHhcc
Confidence 8877764
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=146.33 Aligned_cols=194 Identities=22% Similarity=0.341 Sum_probs=135.4
Q ss_pred CcccCcHHHHHHHHHHHHcC-------CCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA-------NCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||+++++.+.+.+... ..|. ++|+||+|+|||.+|+++++.+++.. ..++.+++++......+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~---~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE---QNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC---cceEEEeHHHhhhhhhhc
Confidence 47889999999888887531 2232 89999999999999999999986432 345566654321111111
Q ss_pred HHHHHHHHhhhcC-CCCC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecC
Q 016800 132 TKIKTFAAVAVGS-GQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~-~~~~-----~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 194 (382)
. +....++- +... ......++.||++||+++++++.++.|+.++++.. .++.||+|||-
T Consensus 643 ~----l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 R----LKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred c----ccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 0 00000000 0000 00011267899999999999999999999999775 67889999863
Q ss_pred cc-----------------------------ccchhhhcccceEEecCCCHHHHHHHHHHHHHH-------h-CC--CCC
Q 016800 195 IS-----------------------------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE-------E-GL--NLD 235 (382)
Q Consensus 195 ~~-----------------------------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~-------~-~~--~~~ 235 (382)
.. .+.|.+.+|+.++.|.|++.+++.+++...+.. . |+ .++
T Consensus 719 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~ 798 (852)
T TIGR03345 719 GSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYS 798 (852)
T ss_pred chHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEEC
Confidence 11 145788899999999999999999988775543 1 43 579
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHH
Q 016800 236 AEALSTLSSISQG---DLRRAITYLQGAA 261 (382)
Q Consensus 236 ~~~~~~l~~~s~g---dlr~a~~~l~~~~ 261 (382)
+++++.|++.+.+ ..|.+.+.++...
T Consensus 799 d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 799 EALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 9999999998876 6888888887644
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-14 Score=133.14 Aligned_cols=172 Identities=21% Similarity=0.216 Sum_probs=113.1
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHc-----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCc
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSR 115 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~ 115 (382)
+++-+.+|+++.|.+..++.+...+.. + ...++|||||||||||++++++++.+..+.. ....
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 444457899999999999888887642 1 2223999999999999999999999843311 1122
Q ss_pred eEEeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH------------HHHHHHH
Q 016800 116 VLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED------------AQNALRR 177 (382)
Q Consensus 116 ~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~Ll~ 177 (382)
++.+..++.. ....++..+....... .. +.+.||+|||+|.+... ..+.|+.
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a-~~---------g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKA-SD---------GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHh-hc---------CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 3333322211 0111222222111111 11 14579999999987321 2356777
Q ss_pred HHHhcC--CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 016800 178 TMETYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD 235 (382)
Q Consensus 178 ~le~~~--~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (382)
.|+... .++.+|.+||.++.+++++.+ |+. .|+|++|+.++..++++..+.. .++++
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~ 385 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLD 385 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCch
Confidence 776433 467788899999999999997 776 7999999999999999887754 34453
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=142.46 Aligned_cols=176 Identities=22% Similarity=0.301 Sum_probs=121.0
Q ss_pred CcccCcHHHHHHHHHHHHcC--------C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA--------N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~--------~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
..++||+++++.+...+... + ..++||+||+|||||.+|+.+++.+. ..++.+++++......+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------~~~i~id~se~~~~~~~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHTVS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC------CCcEEeechhhcccccHH
Confidence 35789999999998888632 1 22499999999999999999999883 345666665432211111
Q ss_pred HHHHHHHHhhhcC-CCCCC-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecC
Q 016800 132 TKIKTFAAVAVGS-GQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~-~~~~~-----~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 194 (382)
..+ ....+. +.... .....++.||++||+|+++++.++.|+++|++.. .++.||++||.
T Consensus 532 ~Li----G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 532 RLI----GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred HHc----CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 111 000000 00000 0011256799999999999999999999998642 46678999872
Q ss_pred c-------------------------cccchhhhcccc-eEEecCCCHHHHHHHHHHHHH-------HhCC--CCCHHHH
Q 016800 195 I-------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDAEAL 239 (382)
Q Consensus 195 ~-------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~~~~~~~ 239 (382)
. ..+.|.+..|+. ++.|+|++.+++..++...+. ..|+ .++++++
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 2 124588889997 899999999999988876543 2344 4689999
Q ss_pred HHHHHhc
Q 016800 240 STLSSIS 246 (382)
Q Consensus 240 ~~l~~~s 246 (382)
+.|++..
T Consensus 688 ~~l~~~~ 694 (758)
T PRK11034 688 DWLAEKG 694 (758)
T ss_pred HHHHHhC
Confidence 9998754
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=117.65 Aligned_cols=190 Identities=21% Similarity=0.261 Sum_probs=134.7
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHH----HHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNT----LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~----l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
....|..+++++|-+..++.|.+- +......|+|++|+.|||||++++++..+....+ ..++++...+...+.
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~~L~~l~ 95 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKEDLGDLP 95 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHHHhccHH
Confidence 345577899999988888766443 3334444599999999999999999999886554 567888776655555
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-HHHHHHHHHHH----hcCCceEEEEeecCccccch---
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-DAQNALRRTME----TYSKVTRFFFICNYISRIIE--- 200 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-~~~~~Ll~~le----~~~~~~~~Il~~~~~~~l~~--- 200 (382)
.+.+.+... +.+-||++||...=.. ..-..|..+|| ..|.++.+..|+|..+.+.+
T Consensus 96 ~l~~~l~~~----------------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 96 ELLDLLRDR----------------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFS 159 (249)
T ss_pred HHHHHHhcC----------------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhh
Confidence 554444321 1456999999764433 33455555554 67888888888876544332
Q ss_pred --------------------hhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHhcCCCHHHHH
Q 016800 201 --------------------PLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-----EALSTLSSISQGDLRRAI 254 (382)
Q Consensus 201 --------------------~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~s~gdlr~a~ 254 (382)
.|..|+- .+.|.+++.++-.+++...+++.|+.+++ +++.......+.+.|.|.
T Consensus 160 d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~ 239 (249)
T PF05673_consen 160 DREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTAR 239 (249)
T ss_pred hccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2334655 78999999999999999999999999985 344444555667889888
Q ss_pred HHHHHHH
Q 016800 255 TYLQGAA 261 (382)
Q Consensus 255 ~~l~~~~ 261 (382)
+.++...
T Consensus 240 QF~~~l~ 246 (249)
T PF05673_consen 240 QFIDDLA 246 (249)
T ss_pred HHHHHHh
Confidence 8776543
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-14 Score=126.63 Aligned_cols=216 Identities=17% Similarity=0.161 Sum_probs=131.2
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---ceEE--------------
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS---RVLE-------------- 118 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~---~~~~-------------- 118 (382)
.|..|.+++||++++..+.-.+-.....|+||+|+||+|||++++++++.+.+...... .+..
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 47899999999999998876554444568999999999999999999999843111000 0000
Q ss_pred ----------eec--CC--CcchHHHHHHHHHHHHhhhcCC-CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC
Q 016800 119 ----------LNA--SD--DRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (382)
Q Consensus 119 ----------~~~--~~--~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~ 183 (382)
+.. +. ..+...+...+.. +.. ...+.+......++++||++.++++.++.|+..|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~------g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~ 156 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTR------GEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhc------CCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence 000 00 0000011111100 000 01122222345699999999999999999999998653
Q ss_pred -------------CceEEEEeecCcc-ccchhhhcccc-eEEecCCCH-HHHHHHHHHHHH-------------------
Q 016800 184 -------------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN------------------- 228 (382)
Q Consensus 184 -------------~~~~~Il~~~~~~-~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~------------------- 228 (382)
....++.+.|..+ .+.+.+..|+. .+.+.++.. ++-.+++.+...
T Consensus 157 v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 236 (334)
T PRK13407 157 NVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQL 236 (334)
T ss_pred eEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCC
Confidence 2233333345433 47888999987 677776665 554555543211
Q ss_pred ----------HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 229 ----------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 229 ----------~~~~~~~~~~~~~l~~~s---~-gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
-.++.++++.++++++.+ + ..+|..+.++..+...+ ...++.++|+.+.
T Consensus 237 ~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 237 RGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred HHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHH
Confidence 023567888888777654 2 35777777665554443 3578888887665
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=129.30 Aligned_cols=183 Identities=19% Similarity=0.213 Sum_probs=129.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC------------CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA------------NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+-+.+++..+|.-++-.. ..|. +|+|||||||||.+|+++|++. ..+|+.+.++..
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPEL 581 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPEL 581 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHH
Confidence 37889888999998888776332 2233 9999999999999999999997 578888877653
Q ss_pred cch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc--CCceEEE
Q 016800 125 RGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY--SKVTRFF 189 (382)
Q Consensus 125 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~--~~~~~~I 189 (382)
.+. ..-...+...++.+-.. -+.||++||+|.|.+ ...|.|+--|+.. ...+.+|
T Consensus 582 lNkYVGESErAVR~vFqRAR~s----------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~vi 651 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARAS----------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVI 651 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcC----------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEE
Confidence 221 11122233333332222 567999999999943 3467777777654 3455677
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhc------CCCHHHHHHH
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS------QGDLRRAITY 256 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s------~gdlr~a~~~ 256 (382)
.+||.|+.+++++.+ |+. .+.+..|+.++...+|+.+.+..+..+++++ ++.|+... |-|+..+...
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvre 728 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVRE 728 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHH
Confidence 778999999999998 554 7888999999999999999887666676654 77777643 4455544443
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=138.29 Aligned_cols=229 Identities=22% Similarity=0.284 Sum_probs=152.9
Q ss_pred cCCCCCchHHHHhhccccccCCchhhhhcCCC--------CC-CcccCcHHHHHHHHHHHHc------CCCCcEEEeCCC
Q 016800 27 QSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPK--------QV-KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPP 91 (382)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~--------~~-~~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~ 91 (382)
..++..++.++.|++-.| .-..||..+-.-. -+ .|-.|-+++++.+..++.- -+.|.++|+|||
T Consensus 281 ~m~~~SaE~~ViRnYlDw-ll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPP 359 (782)
T COG0466 281 TMSPMSAEATVIRNYLDW-LLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPP 359 (782)
T ss_pred cCCCCCchHHHHHHHHHH-HHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCC
Confidence 456677777777777665 4567887654331 11 3556888888888777642 244569999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH-
Q 016800 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED- 170 (382)
Q Consensus 92 G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~- 170 (382)
|+|||++++.+|+.+ +..|+.+.-...+....+|..-..+....++.-.+--...+....++++||+|+|+.+
T Consensus 360 GVGKTSLgkSIA~al------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~ 433 (782)
T COG0466 360 GVGKTSLGKSIAKAL------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSF 433 (782)
T ss_pred CCCchhHHHHHHHHh------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCC
Confidence 999999999999998 4667777666555444444332222211110000000000115569999999999754
Q ss_pred ---HHHHHHHHHH-------------hcC--CceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHH-----H
Q 016800 171 ---AQNALRRTME-------------TYS--KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI-----C 227 (382)
Q Consensus 171 ---~~~~Ll~~le-------------~~~--~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~-----~ 227 (382)
-..+|++.|+ -+. ..+.||.|+|..+.++.+|..|..++++..++.+|-.++.++. .
T Consensus 434 rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~ 513 (782)
T COG0466 434 RGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQL 513 (782)
T ss_pred CCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHH
Confidence 3567777775 111 3577899999999999999999999999999999988776653 3
Q ss_pred HHhC-----CCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 016800 228 NEEG-----LNLDAEALSTLSSIS--QGDLRRAITYLQGAAR 262 (382)
Q Consensus 228 ~~~~-----~~~~~~~~~~l~~~s--~gdlr~a~~~l~~~~~ 262 (382)
+..| +.++++++..|++.. ..-+|.+-..+.+.+.
T Consensus 514 ~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~R 555 (782)
T COG0466 514 KEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICR 555 (782)
T ss_pred HHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHH
Confidence 3344 458999999888754 2236666666666554
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=142.36 Aligned_cols=176 Identities=22% Similarity=0.257 Sum_probs=122.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+++.|.+.+++.+...+.- + +.|. +|||||||||||++|++++.++ ..+++.+++++.
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l 523 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEI 523 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHH
Confidence 4789999999999888877642 1 2333 9999999999999999999987 345666666532
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHHHh--cCCceEE
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMET--YSKVTRF 188 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~--~~~~~~~ 188 (382)
.. ...-...+...+...... .+.||+|||+|.+.+ ...+.|+..|+. ...++.+
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~----------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQA----------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhc----------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 11 111112233222222111 557999999998731 234667777773 3456778
Q ss_pred EEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCHH
Q 016800 189 FFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLR 251 (382)
Q Consensus 189 Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~gdlr 251 (382)
|.+||.++.+++++.+ |+. .+.|++|+.++..++++...++ ..+++ ..++.+++.+.|--.
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sg 658 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTG 658 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCH
Confidence 8899999999999986 887 8999999999999998765543 33433 347788887766443
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-14 Score=142.25 Aligned_cols=202 Identities=17% Similarity=0.181 Sum_probs=147.8
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCCC--
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD-- 124 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~~-- 124 (382)
++++-+...++.++|+++.++.+.+++.....++++|+||||||||+++..++..+.... ..+..++.++....
T Consensus 169 l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a 248 (821)
T CHL00095 169 LTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA 248 (821)
T ss_pred HHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc
Confidence 445556778999999999999999999888888899999999999999999999875321 22345666665321
Q ss_pred --cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEeecC
Q 016800 125 --RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 125 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.....+.+.++......... +..|++|||+|.+.. +.++.|...+.. +...+|.+|+.
T Consensus 249 g~~~~ge~e~rl~~i~~~~~~~----------~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~ 316 (821)
T CHL00095 249 GTKYRGEFEERLKRIFDEIQEN----------NNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTL 316 (821)
T ss_pred cCCCccHHHHHHHHHHHHHHhc----------CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCH
Confidence 12233444444443322111 456999999997742 356777777764 34567777765
Q ss_pred cc-----ccchhhhcccceEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHHHHHHH
Q 016800 195 IS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAITYLQG 259 (382)
Q Consensus 195 ~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s~g------dlr~a~~~l~~ 259 (382)
.. ...+.+.+|++.+.++.++.++...+++.... ..++.++++++..++..++| -|++|+.+|+.
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~ 396 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDE 396 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHH
Confidence 32 35789999999999999999998888876543 24667899999999998864 38889999998
Q ss_pred HHHhc
Q 016800 260 AARLF 264 (382)
Q Consensus 260 ~~~~~ 264 (382)
++...
T Consensus 397 a~a~~ 401 (821)
T CHL00095 397 AGSRV 401 (821)
T ss_pred HHHHH
Confidence 87643
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=141.43 Aligned_cols=179 Identities=24% Similarity=0.346 Sum_probs=123.1
Q ss_pred CcccCcHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||+++++.+.+.+... ..| .++|+||+|+|||++|+++++.+++.. ..++.++++.......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---DAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---cceEEEEchhccccccHH
Confidence 57889999999998887532 222 389999999999999999999997653 345666665432111111
Q ss_pred HHHHHHHHhhhc-CCCCC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecC
Q 016800 132 TKIKTFAAVAVG-SGQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~-~~~~~-----~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~ 194 (382)
..+. .+.+ .+... ......++.||++||+|+++++.++.|++++|+. ..++.||+|+|.
T Consensus 586 ~l~g----~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 KLIG----SPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HhcC----CCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1110 0000 00000 0001136789999999999999999999999974 257889999863
Q ss_pred ccc-------------------------------------cchhhhccc-ceEEecCCCHHHHHHHHHHHHHH-------
Q 016800 195 ISR-------------------------------------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE------- 229 (382)
Q Consensus 195 ~~~-------------------------------------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~------- 229 (382)
... ..|.+.+|+ .++.|.|++.+++.+++...+.+
T Consensus 662 g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~ 741 (821)
T CHL00095 662 GSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNE 741 (821)
T ss_pred chHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 211 225678898 58999999999999988776543
Q ss_pred hC--CCCCHHHHHHHHHhc
Q 016800 230 EG--LNLDAEALSTLSSIS 246 (382)
Q Consensus 230 ~~--~~~~~~~~~~l~~~s 246 (382)
.| +.+++++.+.|++.+
T Consensus 742 ~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 742 QGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred CCcEEEECHHHHHHHHHhc
Confidence 23 357899999998864
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=138.31 Aligned_cols=229 Identities=20% Similarity=0.266 Sum_probs=148.0
Q ss_pred ccCCCCCchHHHHhhccccccCCchhhhhcCCCCC----------CcccCcHHHHHHHHHHHHcCC------CCcEEEeC
Q 016800 26 TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLETAN------CPHMLFYG 89 (382)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~----------~~~~g~~~~~~~l~~~l~~~~------~~~lll~G 89 (382)
....+..++-++.|++-.| .+..||-. +.+-.| +|-.|-+++++.+..++.-++ .+.++|+|
T Consensus 368 ~~le~~~sEfnvtrNYLdw-lt~LPWgk-~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~G 445 (906)
T KOG2004|consen 368 KLLEPSSSEFNVTRNYLDW-LTSLPWGK-SSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVG 445 (906)
T ss_pred hccCccccchhHHHHHHHH-HHhCCCCC-CChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeC
Confidence 3355666677777777666 47788854 322232 456688889999888886543 23489999
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH
Q 016800 90 PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169 (382)
Q Consensus 90 p~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~ 169 (382)
|||+|||++++.+|+.+ +..|+.+.-........++..-..+....++.-..--...+....+++|||+|++..
T Consensus 446 PPGVGKTSI~kSIA~AL------nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~ 519 (906)
T KOG2004|consen 446 PPGVGKTSIAKSIARAL------NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS 519 (906)
T ss_pred CCCCCcccHHHHHHHHh------CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC
Confidence 99999999999999998 455666665443333333322222111110000000000011556999999999963
Q ss_pred ----HHHHHHHHHHHh-------------cC--CceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHH---
Q 016800 170 ----DAQNALRRTMET-------------YS--KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC--- 227 (382)
Q Consensus 170 ----~~~~~Ll~~le~-------------~~--~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~--- 227 (382)
+-..+|+++|+- |- ..+.||+|+|..+.++++|+.|..+|+++.+..+|-.++..+.+
T Consensus 520 g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~ 599 (906)
T KOG2004|consen 520 GHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQ 599 (906)
T ss_pred CCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhH
Confidence 235677777751 11 35678889999999999999999999999999999877766543
Q ss_pred --HHh-----CCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 016800 228 --NEE-----GLNLDAEALSTLSSIS--QGDLRRAITYLQGAAR 262 (382)
Q Consensus 228 --~~~-----~~~~~~~~~~~l~~~s--~gdlr~a~~~l~~~~~ 262 (382)
++. .+.++++++..+++.. ..-+|.+-..+++.+.
T Consensus 600 a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 600 ALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 223 4568888887777543 2236666666665543
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=139.18 Aligned_cols=180 Identities=24% Similarity=0.308 Sum_probs=120.4
Q ss_pred CcccCcHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||+++++.+.+.+... ..| +++|+||+|||||++|+++++.+. ..++.++++.......+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~------~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG------VHLERFDMSEYMEKHTVS 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc------CCeEEEeCchhhhcccHH
Confidence 47889999999988887642 112 389999999999999999999883 345555554321111111
Q ss_pred HHHHHHHHhh-hc-CCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecCcc--
Q 016800 132 TKIKTFAAVA-VG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYIS-- 196 (382)
Q Consensus 132 ~~l~~~~~~~-~~-~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~-- 196 (382)
..+....... .. .+.........++.||++||+++++++.++.|++++++. -.++.||+++|...
T Consensus 528 ~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~ 607 (731)
T TIGR02639 528 RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASE 607 (731)
T ss_pred HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhh
Confidence 1110000000 00 000000001126789999999999999999999999864 14577888886431
Q ss_pred -----------------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHHHHHHHH
Q 016800 197 -----------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAEALSTLS 243 (382)
Q Consensus 197 -----------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~~l~ 243 (382)
.+.|.+.+|+. ++.|+|++.+++..++...+++ .| +.+++++++.|+
T Consensus 608 ~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La 687 (731)
T TIGR02639 608 MSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLA 687 (731)
T ss_pred hhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHH
Confidence 14567888987 8999999999999998886653 22 457899999998
Q ss_pred Hhc
Q 016800 244 SIS 246 (382)
Q Consensus 244 ~~s 246 (382)
+.+
T Consensus 688 ~~~ 690 (731)
T TIGR02639 688 EKG 690 (731)
T ss_pred HhC
Confidence 864
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=127.16 Aligned_cols=199 Identities=21% Similarity=0.213 Sum_probs=131.9
Q ss_pred CCCCCcccCcHHHHHHHHHHH---H--------cCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTL---E--------TANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l---~--------~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
-.+|+|+-|-++++++|...+ + .|+.|. +|++||||||||.+|+++|-+. +.+|++..++..
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA------~VPFF~~sGSEF 373 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA------GVPFFYASGSEF 373 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc------CCCeEeccccch
Confidence 346999999999887776655 3 356666 9999999999999999999887 345555544432
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhcCC--c
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSK--V 185 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~~~--~ 185 (382)
.+...+|+.+.. +... -+.||+|||+|... .+..|.|+--|+.+.. .
T Consensus 374 dEm~VGvGArRVRdLF~a----Ak~~----------APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAA----AKAR----------APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred hhhhhcccHHHHHHHHHH----HHhc----------CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 123344443332 2211 45799999999873 2235667766775543 4
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGA 260 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~ 260 (382)
+++|.+||.++.+++++.+ |+. .+.++.|+..-..++|.....+ +.++++ ....|++-+.| +--++-|++..+
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqA 517 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQA 517 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHH
Confidence 5566678999999999987 565 7899999988888888877654 434433 25556765543 222333444455
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
+..+ ...+|+.+++-+-
T Consensus 518 AlkAa~dga~~VtM~~LE~ak 538 (752)
T KOG0734|consen 518 ALKAAVDGAEMVTMKHLEFAK 538 (752)
T ss_pred HHHHHhcCcccccHHHHhhhh
Confidence 5444 3567877776544
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-13 Score=120.80 Aligned_cols=151 Identities=16% Similarity=0.233 Sum_probs=107.6
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (382)
+.|. ++||||||||||.+|+++++++ +..++.+++++.. +...+++.+..........
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~--------- 210 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKK--------- 210 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhcc---------
Confidence 3444 8999999999999999999998 3556667665321 2344555554433221111
Q ss_pred CCcEEEEEeCCCCCCHH-----------H-HHHHHHHHHhc--------------CCceEEEEeecCccccchhhhc--c
Q 016800 154 PPYKIIILDEADSMTED-----------A-QNALRRTMETY--------------SKVTRFFFICNYISRIIEPLAS--R 205 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~-----------~-~~~Ll~~le~~--------------~~~~~~Il~~~~~~~l~~~l~s--r 205 (382)
+...||+|||+|.+... . ...|+.+++.+ ...+.+|.+||.++.|+++|++ |
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGR 290 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGR 290 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCC
Confidence 15679999999977321 1 13566666542 3457788889999999999999 8
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd 249 (382)
+..+ +..|+.++..++++.+++..+ ++...+..|+....|-
T Consensus 291 fDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 291 MEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred CCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 8764 457999999999998888765 5678888888888764
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-15 Score=131.76 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=109.3
Q ss_pred CCccccccccCCCCCCCCcccccccccCCCCCchHHHHhhccccccCCchhhhhcCCCCCCcccCc-HHHHHHHH--HHH
Q 016800 1 MRANFGKIHKSGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLT--NTL 77 (382)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~g~-~~~~~~l~--~~l 77 (382)
|.++++++...+..+.|++++++... ...|...++.++.-.....+++|+...+....|+...+. ...+..+. .|+
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~e~l~~l-l~~E~~~R~~~~~~~~lk~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~fi 95 (254)
T PRK06526 17 LAGAVERLAERARAESWSHEEFLAAC-LQREVAARESHGGEGRIRAARFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFV 95 (254)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCChhhccCccCCCcchHHHHHHhcCchh
Confidence 34677888889999999999999993 444444444444444444889999766666666655543 33333332 234
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcE
Q 016800 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (382)
Q Consensus 78 ~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 157 (382)
. ...+++|+||||+|||+++.+++..+...+ ..+..+... .+-+.+.......... .....+ .+..
T Consensus 96 ~--~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~~------~l~~~l~~~~~~~~~~-~~l~~l--~~~d 161 (254)
T PRK06526 96 T--GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATAA------QWVARLAAAHHAGRLQ-AELVKL--GRYP 161 (254)
T ss_pred h--cCceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhHH------HHHHHHHHHHhcCcHH-HHHHHh--ccCC
Confidence 3 334799999999999999999999874332 122222221 1111111100000000 000001 1567
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 158 IIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 158 vliiDe~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
+|||||++..+ ...++.|+.+++.......+|+++|.+
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 99999999874 667788999998765555688888765
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-13 Score=137.35 Aligned_cols=195 Identities=25% Similarity=0.363 Sum_probs=129.1
Q ss_pred CCCcccCcHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
-.+.++||+.++..+...+... ..| .++|+||+|||||++|+++++.+++.. ..++.++++.......
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~---~~~i~id~se~~~~~~ 642 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD---DAMVRIDMSEFMEKHS 642 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC---CcEEEEEhHHhhhhhh
Confidence 3567899999999888887642 222 389999999999999999999986543 3456676654321111
Q ss_pred HHHHHHHHHHhhhcC-CCCCC-----CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEee
Q 016800 130 VRTKIKTFAAVAVGS-GQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~-~~~~~-----~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~ 192 (382)
....+ ....+. +...+ .....++.||+|||++.++++.++.|++++++.. .++.||++|
T Consensus 643 ~~~Li----G~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 643 VSRLV----GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred HHHHh----CCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11111 000000 00000 0001255799999999999999999999998752 355688888
Q ss_pred cCcc-------------------------ccchhhhccc-ceEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHH
Q 016800 193 NYIS-------------------------RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAE 237 (382)
Q Consensus 193 ~~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~ 237 (382)
|... .+.+.+.+|+ .++.|.|++.+++..++...+.. .+ +.++++
T Consensus 719 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~ 798 (857)
T PRK10865 719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDE 798 (857)
T ss_pred CcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHH
Confidence 7521 1346788999 58999999999999887775543 23 357999
Q ss_pred HHHHHHHhcCC---CHHHHHHHHHHH
Q 016800 238 ALSTLSSISQG---DLRRAITYLQGA 260 (382)
Q Consensus 238 ~~~~l~~~s~g---dlr~a~~~l~~~ 260 (382)
+++.|++.... ..|-+.+.++..
T Consensus 799 al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 799 ALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHHHcCCCccCChHHHHHHHHHH
Confidence 99999886521 245555555543
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=139.38 Aligned_cols=194 Identities=25% Similarity=0.342 Sum_probs=133.9
Q ss_pred CcccCcHHHHHHHHHHHHcCC-------CC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETAN-------CP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||+.+++.+...+...+ .| .++|+||+|||||++|+++++.+++.. ..++.++++.......+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~---~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE---DAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhhcccchHH
Confidence 568999999999988886531 12 389999999999999999999986543 456677765432211111
Q ss_pred HHHHHHHHhhhcC-CCCC-----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecC
Q 016800 132 TKIKTFAAVAVGS-GQRR-----GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~-~~~~-----~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 194 (382)
..+ ....+. +... ......++.||++||++.++++.++.|++++++.. .++.||++||.
T Consensus 642 ~l~----g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 642 RLI----GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred Hhc----CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 111 000000 0000 00011256799999999999999999999998763 56779999876
Q ss_pred ccc-------------------------cchhhhcccc-eEEecCCCHHHHHHHHHHHHH-------HhC--CCCCHHHH
Q 016800 195 ISR-------------------------IIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEG--LNLDAEAL 239 (382)
Q Consensus 195 ~~~-------------------------l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-------~~~--~~~~~~~~ 239 (382)
... ..+.+..|+. ++.|.|++.+++.+++..... ..+ +.++++++
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~ 797 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAAL 797 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHH
Confidence 221 2356677885 899999999999888766543 222 46899999
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHH
Q 016800 240 STLSSIS---QGDLRRAITYLQGAA 261 (382)
Q Consensus 240 ~~l~~~s---~gdlr~a~~~l~~~~ 261 (382)
+.|++.. .++.|.+.+.++...
T Consensus 798 ~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 798 DFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHhCCCCCCCchhHHHHHHHHH
Confidence 9999874 477888888877655
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-14 Score=110.95 Aligned_cols=113 Identities=29% Similarity=0.338 Sum_probs=82.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
+||+||||+|||++++.+++.+ +..++.+++.... ........+..+........ .+.|++||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA---------KPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS---------TSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccccccccccccccccccccccccc---------cceeeeec
Confidence 6899999999999999999997 4667888876532 11122222333332222110 25799999
Q ss_pred CCCCCCHHH-----------HHHHHHHHHhcCC---ceEEEEeecCccccchhhh-cccc-eEEec
Q 016800 163 EADSMTEDA-----------QNALRRTMETYSK---VTRFFFICNYISRIIEPLA-SRCA-KFRFK 212 (382)
Q Consensus 163 e~d~l~~~~-----------~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~l~-sr~~-~i~~~ 212 (382)
|+|.+.... .+.|+..++.... .+.+|++||..+.+.+++. +|+. .++|+
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred cchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 999997765 7889999987765 4789999999999999999 9988 56653
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=135.29 Aligned_cols=179 Identities=31% Similarity=0.432 Sum_probs=129.3
Q ss_pred CcccCcHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++||++++..+.+.++.. +.| .+||.||+|+|||.+|+++|..+++.. ..++.+|+++......+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechHHHHHHHHHH
Confidence 57889999999999888643 223 389999999999999999999997653 456778887653333332
Q ss_pred HHHHHHHHhhhcC------CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecC
Q 016800 132 TKIKTFAAVAVGS------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~------~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 194 (382)
.+...+++- +.-+......+|.||++||+++.+++..|.|++.|++.. .+++||+|+|-
T Consensus 568 ----rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 568 ----RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred ----HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 222211110 001111223478899999999999999999999999653 57889999852
Q ss_pred cc----------------------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHH-------HhCC--CCCH
Q 016800 195 IS----------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDA 236 (382)
Q Consensus 195 ~~----------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~~~~ 236 (382)
-. ...|.+.+|.. +|.|.+++.+++.+++..... ..++ .+++
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~ 723 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSD 723 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 11 03467778888 999999999999888766443 2344 4789
Q ss_pred HHHHHHHHhc
Q 016800 237 EALSTLSSIS 246 (382)
Q Consensus 237 ~~~~~l~~~s 246 (382)
++.+.|++.+
T Consensus 724 ~a~~~l~~~g 733 (786)
T COG0542 724 EAKDFLAEKG 733 (786)
T ss_pred HHHHHHHHhc
Confidence 9999999876
|
|
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-14 Score=141.76 Aligned_cols=207 Identities=28% Similarity=0.422 Sum_probs=156.9
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcC------------CC--Cc--EEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA------------NC--PH--MLFYGPPGTGKTTTALAIAHQLFGPEL 111 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~--~~--lll~Gp~G~GKt~la~~la~~l~~~~~ 111 (382)
...|.++|+|....++.|.......+.+|+... .. .. ++++||||+|||+.+...++.+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 467999999999999999888777888887654 11 11 5899999999999999999987
Q ss_pred CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCC-CC---CCCCCCcEEEEEeCCCCCCHH---HHHHHHHHHHhcCC
Q 016800 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RG---GYPCPPYKIIILDEADSMTED---AQNALRRTMETYSK 184 (382)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~---~~~~~~~~vliiDe~d~l~~~---~~~~Ll~~le~~~~ 184 (382)
...+++.|+.+.++...+.+.+..+.......... .. .-..+...|||+||+|.|..+ ....+-.+++.-
T Consensus 382 -g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks-- 458 (871)
T KOG1968|consen 382 -GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKS-- 458 (871)
T ss_pred -ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhc--
Confidence 57899999998876666555554433221111000 00 001124459999999999873 355666666633
Q ss_pred ceEEEEeecCcccc-chhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 185 VTRFFFICNYISRI-IEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 185 ~~~~Il~~~~~~~l-~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
...+|++||..... .+++.+-|..++|..|+.+.+...+..+|..+++.++++.++.++..++||+|..++.++....
T Consensus 459 ~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSL 537 (871)
T ss_pred cCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhc
Confidence 33478888876554 3566667789999999999999999999999999999999999999999999999999997743
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-13 Score=131.14 Aligned_cols=218 Identities=20% Similarity=0.232 Sum_probs=147.2
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHH
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (382)
.+.+...+++++|+...++.+.+.++.. ...+++|+|++||||+++|+++...... ....++.+||..... ..+
T Consensus 188 ~~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r---~~~pfv~i~c~~~~~-~~~ 263 (534)
T TIGR01817 188 ARRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR---AKRPFVKVNCAALSE-TLL 263 (534)
T ss_pred cccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeecCCCCH-HHH
Confidence 3455668999999988888777766543 2234999999999999999999986532 235788899976422 222
Q ss_pred HHHHHHHHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc--
Q 016800 131 RTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-- 195 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-- 195 (382)
...+-........+. ...+.+......+++|||++.|+...|..|+.++++.. ..+++|++++..
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~ 343 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLE 343 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHH
Confidence 221100000000000 01122333456799999999999999999999998643 146788887643
Q ss_pred -----cccchhhhcccc--eEEecCCC--HHHHHHHHHHHHHH----hC--CCCCHHHHHHHHHhc-CCCHHHHHHHHHH
Q 016800 196 -----SRIIEPLASRCA--KFRFKPLS--EEVMSSRVLHICNE----EG--LNLDAEALSTLSSIS-QGDLRRAITYLQG 259 (382)
Q Consensus 196 -----~~l~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~~~----~~--~~~~~~~~~~l~~~s-~gdlr~a~~~l~~ 259 (382)
..+.+.+..|+. .+.++|+. .+++..++...+.+ .+ +.++++++..+..+. .||+|.+.+.++.
T Consensus 344 ~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~ 423 (534)
T TIGR01817 344 EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLER 423 (534)
T ss_pred HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 124455666665 57788887 46666555554432 23 568999999999886 9999999999998
Q ss_pred HHHhc-CCCCChhhHh
Q 016800 260 AARLF-GSSITSKDLI 274 (382)
Q Consensus 260 ~~~~~-~~~It~~~v~ 274 (382)
++... +..|+.+++.
T Consensus 424 a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 424 TATLSRSGTITRSDFS 439 (534)
T ss_pred HHHhCCCCcccHHHCc
Confidence 88665 4578877764
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-13 Score=130.42 Aligned_cols=205 Identities=25% Similarity=0.259 Sum_probs=139.5
Q ss_pred CCCCCcccCcHHHHHHHHHHHH---c--------CCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLE---T--------ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+-.|+|+.|.++++..|+.++. + .++|. +||+||||||||.+|+++|.+. +.+|+.+++++.
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSGSEF 380 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSGSEF 380 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeechHHH
Confidence 4689999999999987776652 2 25566 9999999999999999999987 466777766542
Q ss_pred cch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH---------------HHHHHHHHHHHhc--CCc
Q 016800 125 RGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE---------------DAQNALRRTMETY--SKV 185 (382)
Q Consensus 125 ~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~---------------~~~~~Ll~~le~~--~~~ 185 (382)
... ..-...+..+...+... .+.+|+|||+|.... ...|.|+--|+.. ...
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~----------aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKN----------APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred HHHhcccchHHHHHHHHHhhcc----------CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 110 00012223333222211 457999999998742 1245666666643 345
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH-HHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI-TYLQGAA 261 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~-~~l~~~~ 261 (382)
++++.+||.++.+++++.+ |+. .+..+.|+.....+++...+..-....++..+..++..+.|....-+ |++..++
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa 530 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAA 530 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHH
Confidence 6677778999999999987 555 78999999999999998877765554455566668888877665544 3344343
Q ss_pred Hhc----CCCCChhhHhhhh
Q 016800 262 RLF----GSSITSKDLISVS 277 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~ 277 (382)
..+ ...|+.+++..++
T Consensus 531 ~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 531 LLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred HHHHHhccCccchhhHHHHH
Confidence 333 3567777766655
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.2e-13 Score=117.51 Aligned_cols=175 Identities=23% Similarity=0.276 Sum_probs=112.9
Q ss_pred CCCCcccCcHHHHHHHHHHH----------HcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 58 KQVKDVAHQEEVVRVLTNTL----------ETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l----------~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
..|+|+.|..++++.|..++ +..+.|- +|++||||||||.+|++++.+. ...|+.+..+...
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstlt 282 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLT 282 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhh
Confidence 47899999999998887765 2233343 9999999999999999999986 3455555544321
Q ss_pred chHHHH----HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHHHhcC-----C
Q 016800 126 GINVVR----TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYS-----K 184 (382)
Q Consensus 126 ~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~-----~ 184 (382)
..+| ..+.-++..+-.- -+.+|+|||+|.+.. ...+.|+-.|+.-. .
T Consensus 283 --SKwRGeSEKlvRlLFemARfy----------APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~ 350 (491)
T KOG0738|consen 283 --SKWRGESEKLVRLLFEMARFY----------APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENS 350 (491)
T ss_pred --hhhccchHHHHHHHHHHHHHh----------CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccc
Confidence 1111 1122222221111 335999999999832 24567777776322 2
Q ss_pred ceEEEEe-ecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHH
Q 016800 185 VTRFFFI-CNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRR 252 (382)
Q Consensus 185 ~~~~Il~-~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~gdlr~ 252 (382)
..+||++ ||-|-.|+.++++|+. .|.++-|+.+.....|+..+.. +..+ +-.++.|++.+.|--..
T Consensus 351 k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~--~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS--VELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred eeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc--ccCCCCccHHHHHHHhcCCChH
Confidence 3455554 5788999999999998 7888777777777776554432 3233 33466777766554433
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=118.20 Aligned_cols=220 Identities=21% Similarity=0.220 Sum_probs=134.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-chHHHHHHH--
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GINVVRTKI-- 134 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-- 134 (382)
..|.+++||++++..|...+.+.+..+++|.|++|||||++++.+++.+.+........+..++.+.. .-...+...
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence 48899999999999999888888887899999999999999999988875322111110000000000 000000000
Q ss_pred --------------------------H---HHHHhhhcCCC-CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-
Q 016800 135 --------------------------K---TFAAVAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS- 183 (382)
Q Consensus 135 --------------------------~---~~~~~~~~~~~-~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~- 183 (382)
. --.....+... ..+.+......++++||++.+++..|..|+..|++..
T Consensus 94 ~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~ 173 (350)
T CHL00081 94 GETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWN 173 (350)
T ss_pred cccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCe
Confidence 0 00000000000 1222233456799999999999999999999998632
Q ss_pred ----------CceEEEEee--cCcc-ccchhhhcccc-eEEecCCCH-HHHHHHHHHHHH--------------------
Q 016800 184 ----------KVTRFFFIC--NYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN-------------------- 228 (382)
Q Consensus 184 ----------~~~~~Il~~--~~~~-~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~-------------------- 228 (382)
...+|++++ |..+ .+.+.+..|+. .+.+..++. ++-.+++.+...
T Consensus 174 ~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (350)
T CHL00081 174 TVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELR 253 (350)
T ss_pred EEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCH
Confidence 123344444 4333 58888999987 677877763 555555543211
Q ss_pred ---------HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 229 ---------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 229 ---------~~~~~~~~~~~~~l~~~s---~-gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
-..+.++++.++++++.+ + -.+|..+.++..+...+ ...++.+||+.+.
T Consensus 254 ~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a 319 (350)
T CHL00081 254 SKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVI 319 (350)
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 024668888888777654 2 25787777766544433 3568888877665
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=9e-15 Score=128.95 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=107.2
Q ss_pred CCccccccccCCCCCCCCccccccc--ccCCCCCchHHHHhhccccccCCchhhhhcCCCCCCcccC-cHHHHHHH---H
Q 016800 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVL---T 74 (382)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~g-~~~~~~~l---~ 74 (382)
|++++++....+..+.|++.+++.. ..+...+.++.+.+.+. .+++|....+.-..|+...+ .+.....+ .
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk---~A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~ 100 (269)
T PRK08181 24 IKTLWPQFAEQADKEGWPAARFLAAIAEHELAERARRRIERHLA---EAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGD 100 (269)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHhhCCccCCCCCCHHHHHHHHHHH
Confidence 3466778888888999999999999 33444455555555555 77888644343333333333 23333333 3
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH-----HHHHHhhhcCCCCCC
Q 016800 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-----KTFAAVAVGSGQRRG 149 (382)
Q Consensus 75 ~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~ 149 (382)
.|+..+ .+++|+||+|+|||+++.+++.++...+ ..+..++..+. ...+.... ...... .
T Consensus 101 ~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~~~L--~~~l~~a~~~~~~~~~l~~-l------- 165 (269)
T PRK08181 101 SWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRTTDL--VQKLQVARRELQLESAIAK-L------- 165 (269)
T ss_pred HHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeHHHH--HHHHHHHHhCCcHHHHHHH-H-------
Confidence 566543 3699999999999999999999885432 23444443221 11111100 000000 0
Q ss_pred CCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 150 GYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
.+..++||||++..+ ...++.|+.+++.......+|+++|.+
T Consensus 166 ----~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 ----DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ----hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 155799999998774 455678999998766666788888764
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-13 Score=131.86 Aligned_cols=206 Identities=19% Similarity=0.156 Sum_probs=136.3
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
|.+......|+++.|.+..+..+...+.- +..| +++|+||||+|||+++++++.++. ..++.
T Consensus 142 ~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~ 215 (644)
T PRK10733 142 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFT 215 (644)
T ss_pred cCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCEEE
Confidence 33334456788999988888777665431 1223 499999999999999999999873 44566
Q ss_pred eecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHH
Q 016800 119 LNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRT 178 (382)
Q Consensus 119 ~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~ 178 (382)
+++.+.. +...++..+... ... .+.||+|||+|.+.. ...+.|+..
T Consensus 216 is~~~~~~~~~g~~~~~~~~~f~~a----~~~----------~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~ 281 (644)
T PRK10733 216 ISGSDFVEMFVGVGASRVRDMFEQA----KKA----------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE 281 (644)
T ss_pred EehHHhHHhhhcccHHHHHHHHHHH----Hhc----------CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHh
Confidence 6654321 122233332221 111 457999999998832 134566666
Q ss_pred HHhcC--CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----C
Q 016800 179 METYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----D 249 (382)
Q Consensus 179 le~~~--~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g----d 249 (382)
|+... ..+.+|.+||.++.+++++.+ |+. .+.|+.|+.++..++++..++..... .+-.+..+++.+.| |
T Consensus 282 mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgad 360 (644)
T PRK10733 282 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGAD 360 (644)
T ss_pred hhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHH
Confidence 66543 356778889999999999986 775 89999999999999998877654332 12235567877766 6
Q ss_pred HHHHHHHHHHHHHhc-CCCCChhhHhhhh
Q 016800 250 LRRAITYLQGAARLF-GSSITSKDLISVS 277 (382)
Q Consensus 250 lr~a~~~l~~~~~~~-~~~It~~~v~~~~ 277 (382)
+..+++.....+... ...|+..++..+.
T Consensus 361 l~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 361 LANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 666666555433332 3568888877654
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.8e-13 Score=120.60 Aligned_cols=151 Identities=15% Similarity=0.237 Sum_probs=108.3
Q ss_pred CCCCCCcccCcHHHHHHHHH----HHHc-------CCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 56 RPKQVKDVAHQEEVVRVLTN----TLET-------ANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~----~l~~-------~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+|.+|+-++-.++.++.+.+ +++. |+. ..+|||||||||||+++.|+|+.+ +.++..++-.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L------~ydIydLeLt 269 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL------NYDIYDLELT 269 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc------CCceEEeeec
Confidence 56788888877666655544 3332 222 139999999999999999999998 5666666665
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH------H------------HHHHHHHHHHhcC-
Q 016800 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------D------------AQNALRRTMETYS- 183 (382)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------~------------~~~~Ll~~le~~~- 183 (382)
......+++..+.... ++.||+|+|+|.--. + ....|+..++...
T Consensus 270 ~v~~n~dLr~LL~~t~----------------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS 333 (457)
T KOG0743|consen 270 EVKLDSDLRHLLLATP----------------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWS 333 (457)
T ss_pred cccCcHHHHHHHHhCC----------------CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccc
Confidence 5444455555543321 556999999987511 1 1235888887543
Q ss_pred ---CceEEEEeecCccccchhhhcccc---eEEecCCCHHHHHHHHHHHHH
Q 016800 184 ---KVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICN 228 (382)
Q Consensus 184 ---~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~ 228 (382)
...++|||||..++++|+|.++.. .+++...+.+.++....+...
T Consensus 334 scg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 334 SCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 244789999999999999999554 799999999999998876653
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=123.50 Aligned_cols=173 Identities=21% Similarity=0.227 Sum_probs=108.1
Q ss_pred cccCcHHHHHHHHHHHHc-------C---------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 62 DVAHQEEVVRVLTNTLET-------A---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-------~---------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.++||+++++.+...+.+ + ...++||+||||||||++|+++++.+. ..++.+++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------~pf~~id~~~l~ 145 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------VPFAIADATTLT 145 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------CCceecchhhcc
Confidence 478999999988665521 1 124599999999999999999999873 344444443211
Q ss_pred ch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHhcC----
Q 016800 126 GI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETYS---- 183 (382)
Q Consensus 126 ~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~~---- 183 (382)
.. ..+...+......... ......+.||+|||+|.++.. .|++|+++||...
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~------~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADY------DVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred cCCcccchHHHHHHHHHHhccc------cHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC
Confidence 10 1122222222111100 000125679999999999753 7899999998421
Q ss_pred ---------CceEEEEeecC------------------------------c--------c--------------ccchhh
Q 016800 184 ---------KVTRFFFICNY------------------------------I--------S--------------RIIEPL 202 (382)
Q Consensus 184 ---------~~~~~Il~~~~------------------------------~--------~--------------~l~~~l 202 (382)
..+.+|.|+|- . . .+.|.+
T Consensus 220 ~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf 299 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF 299 (412)
T ss_pred CCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence 11222332221 0 0 035667
Q ss_pred hcccc-eEEecCCCHHHHHHHHHH----HH-------HHhCC--CCCHHHHHHHHHhc
Q 016800 203 ASRCA-KFRFKPLSEEVMSSRVLH----IC-------NEEGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 203 ~sr~~-~i~~~~~~~~~~~~~l~~----~~-------~~~~~--~~~~~~~~~l~~~s 246 (382)
..|+. ++.|.+++.+++..++.. .. ...++ .+++++++.|++.+
T Consensus 300 lgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 300 IGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred hCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 77887 789999999999998872 22 23344 47999999999864
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-12 Score=115.84 Aligned_cols=213 Identities=18% Similarity=0.204 Sum_probs=130.1
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-------CCCCCC---C--------------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-------GPELYK---S-------------- 114 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-------~~~~~~---~-------------- 114 (382)
.|..++||++++..+.-.+-.....|++|.|++|+|||+++++++..+- ++...+ .
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 5788999999998887777676677899999999999999999998761 111000 0
Q ss_pred ----------ceEEeec--C--CCcchHHHHHHHHHHHHhhhcCC-CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHH
Q 016800 115 ----------RVLELNA--S--DDRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (382)
Q Consensus 115 ----------~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~l 179 (382)
.+..+.. . +..+...+...+.. +.. ...+.+......++++||++.+++..|+.|+..|
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~------g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l 155 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTE------GVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVA 155 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhc------CCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHH
Confidence 0000000 0 00011111111100 000 0112222335679999999999999999999999
Q ss_pred HhcC-----------CceEEEEe--ecCcc-ccchhhhcccc-eEEecCCCH-HHHHHHHHHHHH---------------
Q 016800 180 ETYS-----------KVTRFFFI--CNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN--------------- 228 (382)
Q Consensus 180 e~~~-----------~~~~~Il~--~~~~~-~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~--------------- 228 (382)
++.. ...+|+++ .|..+ .+.+.+.+|+. .+.+.++.. ++..+++.....
T Consensus 156 ~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e 235 (337)
T TIGR02030 156 ASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTE 235 (337)
T ss_pred HhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhh
Confidence 8642 11233333 34333 57889999998 677777765 555555544211
Q ss_pred --------------HhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 229 --------------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 229 --------------~~~~~~~~~~~~~l~~~s---~g-dlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
-.++.++++.++++++.+ +. .+|..+.++..+...+ ...++.+||+.++
T Consensus 236 ~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a 306 (337)
T TIGR02030 236 QEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVA 306 (337)
T ss_pred hhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 024567888877777644 33 4787777766554443 3578888887765
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-12 Score=117.57 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=134.0
Q ss_pred ccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 63 VAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
++|+...++.+.+.+..- ...+++|+|++||||+++|+++...... ....++.+||.... ...+...+-.....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r---~~~pfv~vnc~~~~-~~~l~~~lfG~~~g 76 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR---WQGPLVKLNCAALS-ENLLDSELFGHEAG 76 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc---cCCCeEEEeCCCCC-hHHHHHHHhccccc
Confidence 356666665555554432 2224999999999999999999875421 23578889987542 22222211110000
Q ss_pred hhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------cccch
Q 016800 141 AVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIE 200 (382)
Q Consensus 141 ~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l~~ 200 (382)
...+. ...+.+......+++|||++.|+.+.|..|+.++++.. ..+++|++++.. ..+.+
T Consensus 77 ~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~ 156 (329)
T TIGR02974 77 AFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRA 156 (329)
T ss_pred cccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHH
Confidence 00000 01122333456799999999999999999999998643 346788887643 23446
Q ss_pred hhhcccc--eEEecCCC--HHHHHHHHHHH----HHHhC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-CC
Q 016800 201 PLASRCA--KFRFKPLS--EEVMSSRVLHI----CNEEG----LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (382)
Q Consensus 201 ~l~sr~~--~i~~~~~~--~~~~~~~l~~~----~~~~~----~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~~ 266 (382)
.+..|+. .+.++|+. .+++..++... +.+.+ ..++++++..|..+. .||+|.+.+.++.++... +.
T Consensus 157 dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~ 236 (329)
T TIGR02974 157 DLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLE 236 (329)
T ss_pred HHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC
Confidence 6777774 67888887 46666655443 33333 358999999999887 999999999999888765 34
Q ss_pred CCChhh
Q 016800 267 SITSKD 272 (382)
Q Consensus 267 ~It~~~ 272 (382)
.++.++
T Consensus 237 ~~~~~~ 242 (329)
T TIGR02974 237 EAPIDE 242 (329)
T ss_pred ccchhh
Confidence 455544
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-12 Score=125.03 Aligned_cols=204 Identities=22% Similarity=0.239 Sum_probs=135.4
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|.++.|.+.....+...+.. + +.+ .+|||||||||||.+|++++.+. +..++.+..++.
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l 312 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSEL 312 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHH
Confidence 4778888888777776665521 1 223 39999999999999999999976 466777777643
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH--hcCCceEEE
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME--TYSKVTRFF 189 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le--~~~~~~~~I 189 (382)
.+ +......+......+... ...||+|||+|.+. ....+.|+..++ +....+.+|
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~----------~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi 382 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKL----------APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382 (494)
T ss_pred hccccchHHHHHHHHHHHHHcC----------CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE
Confidence 22 222223333333322211 45799999999882 245677777775 444566678
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHhcCCC-HHHHHHHHHHHHHhc
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGD-LRRAITYLQGAARLF 264 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~s~gd-lr~a~~~l~~~~~~~ 264 (382)
.+||.++.+++++.+ |+. .+.|++|+.++..++++......+..+ ++-.+..+++.+.|- -.++..+++.++..+
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~ 462 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEA 462 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 889999999999999 887 899999999999999998887655542 345567777766542 233333444443332
Q ss_pred -----CCCCChhhHhhhh
Q 016800 265 -----GSSITSKDLISVS 277 (382)
Q Consensus 265 -----~~~It~~~v~~~~ 277 (382)
...|+.+++..+.
T Consensus 463 ~~~~~~~~~~~~~~~~a~ 480 (494)
T COG0464 463 LREARRREVTLDDFLDAL 480 (494)
T ss_pred HHHhccCCccHHHHHHHH
Confidence 1245555554444
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-12 Score=107.60 Aligned_cols=158 Identities=22% Similarity=0.319 Sum_probs=108.3
Q ss_pred cCCC-CCCcccCcHHHHHHHHHHHHcC------------CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 55 YRPK-QVKDVAHQEEVVRVLTNTLETA------------NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 55 ~~p~-~~~~~~g~~~~~~~l~~~l~~~------------~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
-+|. +..|+-|.+-.++.++..++-. .+| .+|+|||||||||.+++++++.. ...|+.+.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t------~a~firvv 221 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVV 221 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc------chheeeec
Confidence 3453 6678878777777776665421 223 39999999999999999999875 34566666
Q ss_pred cCCC------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh--
Q 016800 121 ASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-- 181 (382)
Q Consensus 121 ~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~-- 181 (382)
++.. .+..-+++.+.- ... +.+.+++|||+|.+. .+.|..|+.++..
T Consensus 222 gsefvqkylgegprmvrdvfrl----ake----------napsiifideidaiatkrfdaqtgadrevqril~ellnqmd 287 (408)
T KOG0727|consen 222 GSEFVQKYLGEGPRMVRDVFRL----AKE----------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMD 287 (408)
T ss_pred cHHHHHHHhccCcHHHHHHHHH----Hhc----------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhcc
Confidence 5531 122233332221 111 145699999999873 3456677777653
Q ss_pred ---cCCceEEEEeecCccccchhhhccc--c-eEEecCCCHHHHHHHHHHHHHHhCC
Q 016800 182 ---YSKVTRFFFICNYISRIIEPLASRC--A-KFRFKPLSEEVMSSRVLHICNEEGL 232 (382)
Q Consensus 182 ---~~~~~~~Il~~~~~~~l~~~l~sr~--~-~i~~~~~~~~~~~~~l~~~~~~~~~ 232 (382)
...++.+|+.||..+.+.|++.+-. . .++|+.++..+-+-.+..+..+.+.
T Consensus 288 gfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l 344 (408)
T KOG0727|consen 288 GFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL 344 (408)
T ss_pred CcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC
Confidence 3457889999999999999998744 3 7999988888888777777766554
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=115.93 Aligned_cols=225 Identities=21% Similarity=0.242 Sum_probs=132.5
Q ss_pred CCCcccCcHHHHHHHHHHH----------HcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 59 QVKDVAHQEEVVRVLTNTL----------ETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l----------~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
.|+|+.|.+.+++.|...+ ..++.|- +|+||||||||+-+|++++.+. +..|+.+..++..+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVS 204 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHH
Confidence 7899999999999888765 2334443 9999999999999999999997 45667776665321
Q ss_pred h--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-------HH----HHHHHHHHHh---cCCceEEEE
Q 016800 127 I--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------DA----QNALRRTMET---YSKVTRFFF 190 (382)
Q Consensus 127 ~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-------~~----~~~Ll~~le~---~~~~~~~Il 190 (382)
. ..-...++.++..+... ++.||+|||+|.+.. ++ ...|+--|.. ....+.++-
T Consensus 205 KWmGESEkLVknLFemARe~----------kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMAREN----------KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred HHhccHHHHHHHHHHHHHhc----------CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 1 11123344444433322 667999999998831 11 1233333332 234455566
Q ss_pred eecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--CCC
Q 016800 191 ICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSS 267 (382)
Q Consensus 191 ~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~--~~~ 267 (382)
+||-+-.+..+|++|+. .|.++-|.........+-.+-...-.+++..+..|++.+.|--..-+.++-.-+... .+.
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 67888999999999998 666655544433333322111111236888899999887664332222222222111 112
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHH
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDL 299 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (382)
-+.-+.+.+.+-+.+..+..++.-+..++...
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga 386 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGA 386 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcch
Confidence 23344455555444444555555555565554
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=103.64 Aligned_cols=137 Identities=35% Similarity=0.397 Sum_probs=94.2
Q ss_pred cCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH----HHHH
Q 016800 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK----TFAA 139 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~ 139 (382)
+|++..+..+...+......+++++||+|+|||++++.+++.+... ...++.+++.............. ....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHFLVRLLF 77 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhhhHhHHH
Confidence 3677888888888877655679999999999999999999987422 24556666554322222111111 0000
Q ss_pred hhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------CCceEEEEeecCcc--ccchhhhccc-ceEE
Q 016800 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYIS--RIIEPLASRC-AKFR 210 (382)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~------~~~~~~Il~~~~~~--~l~~~l~sr~-~~i~ 210 (382)
.... ..+..++++||++.+.......++..++.. ...+.+|++++... .+.+.+.+|+ ..+.
T Consensus 78 ~~~~---------~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~ 148 (151)
T cd00009 78 ELAE---------KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIV 148 (151)
T ss_pred Hhhc---------cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEee
Confidence 0000 115679999999999888888888888875 35677888888766 7888999999 4666
Q ss_pred ec
Q 016800 211 FK 212 (382)
Q Consensus 211 ~~ 212 (382)
++
T Consensus 149 ~~ 150 (151)
T cd00009 149 IP 150 (151)
T ss_pred cC
Confidence 64
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=116.74 Aligned_cols=156 Identities=23% Similarity=0.226 Sum_probs=108.1
Q ss_pred CCCcccCcHHHHHHHHHHHHc--------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc--hH
Q 016800 59 QVKDVAHQEEVVRVLTNTLET--------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--IN 128 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~ 128 (382)
.|++++.++...+.+.++... +...+++||||||||||.+|+.+++.- ..++.-+.+.|..+ .+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S------GlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS------GLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc------CCceehhcCCCccccchH
Confidence 388999999888888776532 233459999999999999999999875 33444344444322 22
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHH---HHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TED---AQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~---~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
-+-. +..++.....+ .+.-+++|||+|.+ +.+ +.|+|+----+.+...++++.+|.|.
T Consensus 427 aVTk-iH~lFDWakkS---------~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 427 AVTK-IHKLFDWAKKS---------RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHHH-HHHHHHHHhhc---------ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 2222 22222221111 14569999999865 222 34555544445567788899999999
Q ss_pred ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh
Q 016800 197 RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE 230 (382)
Q Consensus 197 ~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~ 230 (382)
.++.++-.|+. +++|+.|..+|...+|..++.+.
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 99999999998 89999999999999988777653
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.8e-13 Score=115.58 Aligned_cols=188 Identities=21% Similarity=0.297 Sum_probs=108.5
Q ss_pred ccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH---------
Q 016800 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK--------- 133 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 133 (382)
++|+++.++.|.+++..+...+++++||.|+|||++++.+.+.+...+. ..+.++.............
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 5799999999999999887777999999999999999999998732221 1222222222221111111
Q ss_pred HHHHHHhhhcCCC----------C-CCCC--------CCCCcEEEEEeCCCCCC------HHHHHHHHHHHHh--cCCce
Q 016800 134 IKTFAAVAVGSGQ----------R-RGGY--------PCPPYKIIILDEADSMT------EDAQNALRRTMET--YSKVT 186 (382)
Q Consensus 134 l~~~~~~~~~~~~----------~-~~~~--------~~~~~~vliiDe~d~l~------~~~~~~Ll~~le~--~~~~~ 186 (382)
+............ . .... ..+..-+|+|||++.+. ......|..+++. ...+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 0010111000000 0 0000 01134799999999988 4556777788776 23455
Q ss_pred EEEEeecCcc------ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHhcCCCHHHHH
Q 016800 187 RFFFICNYIS------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL--DAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 187 ~~Il~~~~~~------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~gdlr~a~ 254 (382)
.+|+++.... .-..++..|+..+.+++++.++..+++...+... ..+ +++.++.+...+||+|+.+.
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 5666654321 1234567788889999999999999999887665 544 99999999999999999753
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=116.17 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=119.1
Q ss_pred CcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-----CCcchHHHHHHH-
Q 016800 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-----DDRGINVVRTKI- 134 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l- 134 (382)
+.++|++++++.+...+..+. |+||+||||||||++|+++++...... .+....+. +..+...+....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~DLfG~l~i~~~~~ 93 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPEEVFGPLSIQALKD 93 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcHHhcCcHHHhhhhh
Confidence 468899999999988887765 799999999999999999999763221 11212211 111111111100
Q ss_pred -HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------CceEEEEee-cCcc---ccch
Q 016800 135 -KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---------KVTRFFFIC-NYIS---RIIE 200 (382)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------~~~~~Il~~-~~~~---~l~~ 200 (382)
..|... ..+.+. ...++++||+.++++..++.|+..|++.. -..+|++++ |+.. ...+
T Consensus 94 ~g~f~r~------~~G~L~--~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~le 165 (498)
T PRK13531 94 EGRYQRL------TSGYLP--EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLE 165 (498)
T ss_pred cCchhhh------cCCccc--cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchH
Confidence 000000 001111 23499999999999999999999997543 123454444 4321 2334
Q ss_pred hhhcccc-eEEecCCC-HHHHHHHHHHHHH-----------------------HhCCCCCHHHHHHHHHhc------C--
Q 016800 201 PLASRCA-KFRFKPLS-EEVMSSRVLHICN-----------------------EEGLNLDAEALSTLSSIS------Q-- 247 (382)
Q Consensus 201 ~l~sr~~-~i~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~l~~~s------~-- 247 (382)
++..|+. .+.+++++ .++..++|..... -..+.+++...++|.+.. .
T Consensus 166 AL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~ 245 (498)
T PRK13531 166 ALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNA 245 (498)
T ss_pred HhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCC
Confidence 7888886 67888886 4555666654211 023456677766666543 1
Q ss_pred --CCHHHHHHHHHHHHHhc----CCCCChhhHh
Q 016800 248 --GDLRRAITYLQGAARLF----GSSITSKDLI 274 (382)
Q Consensus 248 --gdlr~a~~~l~~~~~~~----~~~It~~~v~ 274 (382)
-++|..+.++..+...+ ...++.+||.
T Consensus 246 ~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 246 PYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred CCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 35676666554333222 3567777776
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-12 Score=114.98 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=136.9
Q ss_pred CCCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+++++|....++.+.+.+..-. ..+++|+|++||||+++|+++..... .....++.++|.... ...+...+-.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~---r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC---ccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 35688998877777766665432 22499999999999999999986431 123578889988642 2222222111
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------c
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~ 196 (382)
.......+. ...+.+......+++|||++.|+...|..|+.++++.. .++++|++++.. .
T Consensus 80 ~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred ccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence 000000000 01122233355789999999999999999999998632 246788877643 2
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHHHHH----HHHhC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEG----LNLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~----~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~ 263 (382)
.+.+.+..|+. .+.++|+.. +++..++... +.+.+ ..++++++..+..+. .||+|.+.+.++.++..
T Consensus 160 ~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 160 KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 34566777764 678888765 4665555443 43433 257999999988876 89999999999988765
Q ss_pred c-CCCCChhh
Q 016800 264 F-GSSITSKD 272 (382)
Q Consensus 264 ~-~~~It~~~ 272 (382)
+ +..|+.++
T Consensus 240 ~~~~~~~~~~ 249 (326)
T PRK11608 240 HGTSEYPLDN 249 (326)
T ss_pred cCCCCCchhh
Confidence 4 34455444
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=129.62 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=120.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+++.|.++.++.+..++... ...++||+||||||||++++++++.+ ...++.+++.+.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~~i 248 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGPEI 248 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecHHH
Confidence 58899999999999888877421 12249999999999999999999987 344566665432
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhcC--CceEEE
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--KVTRFF 189 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~~--~~~~~I 189 (382)
.. .......+..+....... ...+|+|||+|.+. ...++.|+..++... ..+.+|
T Consensus 249 ~~~~~g~~~~~l~~lf~~a~~~----------~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 249 MSKYYGESEERLREIFKEAEEN----------APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred hcccccHHHHHHHHHHHHHHhc----------CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 11 111112222222222111 44699999998874 234677888887643 345566
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHH
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRR 252 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~gdlr~ 252 (382)
.++|.+..+.+.+++ |+. .+.|+.|+.++..++++.... +..+. +..+..+++.+.|-...
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCHH
Confidence 678888999999887 665 789999999999999985544 33333 34577888888775444
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-11 Score=111.58 Aligned_cols=208 Identities=17% Similarity=0.229 Sum_probs=136.9
Q ss_pred hhhcCCCCCCcccCcHHHHHHHHHHHHcC----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch
Q 016800 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (382)
Q Consensus 52 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~~----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (382)
...+.| ..+.|++..+..+..|+... ....+.+.|.||+|||.+...+...+.+.. .....+++|+......
T Consensus 144 ~~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~inc~sl~~~ 219 (529)
T KOG2227|consen 144 LNTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYINCTSLTEA 219 (529)
T ss_pred HhcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEEeeccccch
Confidence 334455 45678888888888887543 333499999999999999998888764432 2245678888753222
Q ss_pred HH-HHHHHHHHHHhhhcCCCC-------CCCCC-CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-CceE--EEEeecCc
Q 016800 128 NV-VRTKIKTFAAVAVGSGQR-------RGGYP-CPPYKIIILDEADSMTEDAQNALRRTMETYS-KVTR--FFFICNYI 195 (382)
Q Consensus 128 ~~-~~~~l~~~~~~~~~~~~~-------~~~~~-~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-~~~~--~Il~~~~~ 195 (382)
.. .......+.+...+.+.. ...+. ....-++++||.|.+-...+..|+.+++.+. .+.+ +|.++|..
T Consensus 220 ~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhh
Confidence 22 222222221111111100 00000 1135689999999999888889999988764 2334 44455654
Q ss_pred ---cccchhhhcccc----eEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhc---CCCHHHHHHHHHHHHHh
Q 016800 196 ---SRIIEPLASRCA----KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSIS---QGDLRRAITYLQGAARL 263 (382)
Q Consensus 196 ---~~l~~~l~sr~~----~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~~ 263 (382)
++.++.|..|+. .+.|+|++.+++.++|..+...+... +-+.+++.+|+.+ .||+|+|+..++.+...
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI 378 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI 378 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 457788887654 89999999999999999988876543 4455777777643 79999999999866544
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=113.78 Aligned_cols=188 Identities=24% Similarity=0.285 Sum_probs=123.1
Q ss_pred CCCCcccCcHHHHHHHHHHHH----------cC---CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE----------TA---NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~----------~~---~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
-+|+|+-|-+.+++.+...+- .+ +.+ ++|++||||||||.+|++++++.. ..++.+..+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag------a~fInv~~s~ 162 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG------ANFINVSVSN 162 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC------CCcceeeccc
Confidence 478899999999988877662 11 222 399999999999999999999973 3444444443
Q ss_pred Ccc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-------HHH----HHHHHHHHHhc----CCce
Q 016800 124 DRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-------EDA----QNALRRTMETY----SKVT 186 (382)
Q Consensus 124 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-------~~~----~~~Ll~~le~~----~~~~ 186 (382)
..+ ...-....+..+..+..- .+.+++|||+|.+. .++ .+.|.-+.+.. ...+
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl----------~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKL----------QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhc----------CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceE
Confidence 221 111112222222211111 55799999999874 111 23444444322 2234
Q ss_pred EEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
.++.+||.|..+++++.+|.. .++++-|+..+..++|+-+.+.+.+. ++=.+..++..+.|--..=+.++...+.
T Consensus 233 lVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred EEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 444457999999999999976 89999999999999999999888864 3334778888887765554544444444
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-12 Score=123.81 Aligned_cols=171 Identities=23% Similarity=0.276 Sum_probs=115.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHc----------C-C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET----------A-N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~----------~-~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (382)
.+|+|+-|-++++..+..-++. | + ...+|||||||||||-+|+++|.+. +..|+.+.+++.
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlSVKGPELL 742 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELL 742 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEeecCHHHH
Confidence 4789999999999999877754 2 2 2349999999999999999999987 567777766542
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH-------------HHHHHHHHHHhcC---
Q 016800 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-------------AQNALRRTMETYS--- 183 (382)
Q Consensus 125 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-------------~~~~Ll~~le~~~--- 183 (382)
.+...+|+.+..... +.+.||++||+|.+.+. ....|+.-|+.-+
T Consensus 743 NMYVGqSE~NVR~VFerAR~--------------A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARS--------------AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred HHHhcchHHHHHHHHHHhhc--------------cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 223445554444221 26789999999999542 3455666666433
Q ss_pred -CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCC
Q 016800 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD 249 (382)
Q Consensus 184 -~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gd 249 (382)
..+-+|-+||.|+.+++++.+ |++ .+.+.+...++-+..+.+... ....+++++ +..|++.+.-+
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT-rkFkLdedVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT-RKFKLDEDVDLVEIAKKCPPN 878 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH-HHccCCCCcCHHHHHhhCCcC
Confidence 344455567999999999987 666 567777766665554433222 233455443 66777766433
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-11 Score=117.23 Aligned_cols=201 Identities=21% Similarity=0.243 Sum_probs=135.5
Q ss_pred ccCcHHHHHHHHHHHHcC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcC----CCCCCCceEEeecCCCcchHHHHHH
Q 016800 63 VAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFG----PELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~-----~~~~lll~Gp~G~GKt~la~~la~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+.+++.....+..+++.. ....+.++|-||||||++++.+.+.+.. .....+.++++|+-...+..++...
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 346666666666666532 2223899999999999999999997751 2234567889998654444433332
Q ss_pred HHHHHHhhhcCC---------CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---CceEEEEeecCcc---c-
Q 016800 134 IKTFAAVAVGSG---------QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNYIS---R- 197 (382)
Q Consensus 134 l~~~~~~~~~~~---------~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---~~~~~Il~~~~~~---~- 197 (382)
|-.......... ......+.....||+|||.|.|-...|..|..++++|. ...++|.++|..+ +
T Consensus 478 I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~ 557 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERL 557 (767)
T ss_pred HHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHH
Confidence 222110000000 00011123366799999999998888999999999875 2344555666543 3
Q ss_pred cchhhhcccc--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHhc
Q 016800 198 IIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI---SQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 198 l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---s~gdlr~a~~~l~~~~~~~ 264 (382)
+...+.||.. .+.|.|++.+++.+++..+++.- ..++.++++.+++. ..||.|+|+..+..++..+
T Consensus 558 l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 558 LMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIA 628 (767)
T ss_pred hccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3346667765 89999999999999998877654 34778888877754 4799999999999888665
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-12 Score=116.10 Aligned_cols=204 Identities=19% Similarity=0.200 Sum_probs=137.5
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
..+.+++|.....+.+.+.++.-.. .++|++|++||||+.+|+.+...- .......++.+||.....--...+ +-
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s--~r~~~~PFI~~NCa~~~en~~~~e-LF 151 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALS--ARRAEAPFIAFNCAAYSENLQEAE-LF 151 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhh--hcccCCCEEEEEHHHhCcCHHHHH-Hh
Confidence 4678999988777777766665322 239999999999999999999432 222467899999986533222212 11
Q ss_pred HHHHhhhcC--CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----------cCCceEEEEeecC--ccccch
Q 016800 136 TFAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-----------YSKVTRFFFICNY--ISRIIE 200 (382)
Q Consensus 136 ~~~~~~~~~--~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~-----------~~~~~~~Il~~~~--~~~l~~ 200 (382)
........+ ....+-++..+...+++||++.|++..|..|+.+||+ .+.++++|++|+. ...+.+
T Consensus 152 G~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~ 231 (403)
T COG1221 152 GHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA 231 (403)
T ss_pred ccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHh
Confidence 111111111 1133444556778999999999999999999999997 3456778887754 345555
Q ss_pred --hhhcccc--eEEecCCCH--HHHHH----HHHHHHHHhCCCC---CHHHHHHHHHh-cCCCHHHHHHHHHHHHHhc
Q 016800 201 --PLASRCA--KFRFKPLSE--EVMSS----RVLHICNEEGLNL---DAEALSTLSSI-SQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 201 --~l~sr~~--~i~~~~~~~--~~~~~----~l~~~~~~~~~~~---~~~~~~~l~~~-s~gdlr~a~~~l~~~~~~~ 264 (382)
++..|+. .|.++|+.+ +|+.. ++...+.+.+.++ +++++..+..+ ..||+|.+.|.++.++...
T Consensus 232 g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 232 GADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 6766554 677777765 34444 3444555555543 34677777665 4899999999999988765
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=119.90 Aligned_cols=215 Identities=17% Similarity=0.160 Sum_probs=140.9
Q ss_pred CCCCcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
..|++++|+...++.+.+.++. ....+++|+|++||||+.+|+.+...-. ..+.+++.+||.... ...+...+-
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~---r~~~pfv~inC~~l~-e~lleseLF 284 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSG---RRDFPFVAINCGAIA-ESLLEAELF 284 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcC---cCCCCEEEeccccCC-hhHHHHHhc
Confidence 5788999998888877777753 2233599999999999999999987542 124578889997642 222222221
Q ss_pred HHHHhhhcCC---CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-----
Q 016800 136 TFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS----- 196 (382)
Q Consensus 136 ~~~~~~~~~~---~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~----- 196 (382)
........+. ...+.++......++|||++.|+.+.|..|++.+++.. ..+++|++++...
T Consensus 285 G~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~ 364 (526)
T TIGR02329 285 GYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQ 364 (526)
T ss_pred CCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhh
Confidence 1110010000 01122233456799999999999999999999998643 2347888876532
Q ss_pred --ccchhhhcccc--eEEecCCCH--HHHHHHHHHHH----HHhCCCCCHHHHHH-------HHHhc-CCCHHHHHHHHH
Q 016800 197 --RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEGLNLDAEALST-------LSSIS-QGDLRRAITYLQ 258 (382)
Q Consensus 197 --~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~~~~~~~~~~-------l~~~s-~gdlr~a~~~l~ 258 (382)
.+.+.+-.|.. .+.++|+.+ +++..++...+ ...++.++++++.. +..+. .||+|.+.+.++
T Consensus 365 ~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvie 444 (526)
T TIGR02329 365 QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVE 444 (526)
T ss_pred hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHH
Confidence 22334444553 678888765 56655544443 34466789998876 65554 899999999999
Q ss_pred HHHHhc----CCCCChhhHhhh
Q 016800 259 GAARLF----GSSITSKDLISV 276 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~ 276 (382)
.++... +..|+.+++...
T Consensus 445 r~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 445 RLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHhcccCCCCccCHHHhhhh
Confidence 988653 356887776443
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=105.21 Aligned_cols=120 Identities=23% Similarity=0.309 Sum_probs=98.4
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------------CccccchhhhcccceEEecCCCHHHHHHHH
Q 016800 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 156 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
+.|++|||+|.+.-+....|-+.+|+--.. .+|+.+| +++.++-.+..|..++...|++.++++++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 469999999999999999999999975443 3455553 355688899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc----CCCCChhhHhhh
Q 016800 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISV 276 (382)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~ 276 (382)
..+|..+++.+++++++.+.... ..++|.+++++....... +..+..++++++
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~ 425 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERV 425 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHH
Confidence 99999999999999999998765 568999999987665443 455666666554
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-11 Score=117.40 Aligned_cols=213 Identities=20% Similarity=0.222 Sum_probs=139.8
Q ss_pred CCCCCcccCcHHHHHHHHHHHHc-C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLET-A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
...|++++|....++.+...++. . ...+++|+|++||||+++|+++..... .....++.+||.... .+.+...+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~---r~~~pfv~inca~~~-~~~~e~el 275 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP---RGKKPFLALNCASIP-DDVVESEL 275 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC---CCCCCeEEeccccCC-HHHHHHHh
Confidence 45899999998777666655542 2 223499999999999999999876532 123567889987643 22222211
Q ss_pred HHHHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-----
Q 016800 135 KTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS----- 196 (382)
Q Consensus 135 ~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~----- 196 (382)
-........+. ...+.++......|+|||++.|+...|..|+.++++.. ..+++|++|+..-
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~ 355 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQ 355 (520)
T ss_pred cCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 10000000000 01111223356789999999999999999999998632 2457888775431
Q ss_pred --ccchhhhcccc--eEEecCCCH--HHHHHH----HHHHHHHhCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 016800 197 --RIIEPLASRCA--KFRFKPLSE--EVMSSR----VLHICNEEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAAR 262 (382)
Q Consensus 197 --~l~~~l~sr~~--~i~~~~~~~--~~~~~~----l~~~~~~~~~---~~~~~~~~~l~~~-s~gdlr~a~~~l~~~~~ 262 (382)
.+.+.+..|.. .+.++|+.+ +++..+ +.+.+.+.|. .++++++..|..+ ..||+|.+.+.+..+..
T Consensus 356 ~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 356 KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 23455667754 677777765 455543 4444555543 5899999999888 69999999999998887
Q ss_pred hc-CCCCChhhH
Q 016800 263 LF-GSSITSKDL 273 (382)
Q Consensus 263 ~~-~~~It~~~v 273 (382)
.. +..|+.+++
T Consensus 436 ~~~~~~i~~~~~ 447 (520)
T PRK10820 436 QLEGYELRPQDI 447 (520)
T ss_pred hCCCCcccHHHc
Confidence 65 457887775
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-12 Score=124.91 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=140.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
.+|++++|....++.+.+.++.. ...+++|+|++||||+++|+++.+.... ....++.+||.... .+.+...+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r---~~~pfv~vnc~~~~-~~~~~~el- 396 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER---AAGPYIAVNCQLYP-DEALAEEF- 396 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc---cCCCeEEEECCCCC-hHHHHHHh-
Confidence 47899999887776665555432 2224999999999999999999886522 23578889987653 22222211
Q ss_pred HHHHhhhc--CCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc------
Q 016800 136 TFAAVAVG--SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------ 196 (382)
Q Consensus 136 ~~~~~~~~--~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------ 196 (382)
...... .....+.++.....+++|||++.|+.+.|..|++++++.. ..+++|++++..-
T Consensus 397 --fg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~ 474 (638)
T PRK11388 397 --LGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQ 474 (638)
T ss_pred --cCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhc
Confidence 111000 0001122333456799999999999999999999998642 1456788776431
Q ss_pred -ccchhhhcccc--eEEecCCCH--HHHHHHHHHHHHH----hC--CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 -RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EG--LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 -~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~~----~~--~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+.+.+-.|.. .+.++|+.+ +++..++...+.+ .+ +.++++++..|..+. .||+|.+.+.++.+....
T Consensus 475 ~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 475 NRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred CCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 23334444444 567777765 4565555554432 22 468999999999988 999999999999877655
Q ss_pred -CCCCChhhHhhh
Q 016800 265 -GSSITSKDLISV 276 (382)
Q Consensus 265 -~~~It~~~v~~~ 276 (382)
+..|+.+++...
T Consensus 555 ~~~~i~~~~lp~~ 567 (638)
T PRK11388 555 DNGRIRLSDLPEH 567 (638)
T ss_pred CCCeecHHHCchh
Confidence 456887776543
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-11 Score=113.72 Aligned_cols=213 Identities=23% Similarity=0.236 Sum_probs=146.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
....+++|+...++.+.+.+..-.. .++||+|++||||..+|++|.+.-- -.+.+|+.+||... +.+.+...+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~---R~~~PFVavNcaAi-p~~l~ESELF 213 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASP---RAKGPFIAVNCAAI-PENLLESELF 213 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCc---ccCCCceeeecccC-CHHHHHHHhh
Confidence 3567999999999888888765432 2399999999999999999988642 22457899999864 3333333232
Q ss_pred HHHHhhhcCCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc------
Q 016800 136 TFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------ 196 (382)
Q Consensus 136 ~~~~~~~~~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------ 196 (382)
.....++.+.. ..+.++......+++||+..|+.+.|..|++.+++.. -.++||.+||..-
T Consensus 214 GhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~ 293 (464)
T COG2204 214 GHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAA 293 (464)
T ss_pred cccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHc
Confidence 22221111111 2334555577899999999999999999999998643 3567888886532
Q ss_pred -ccchhhhcccceE--EecCCCH--HHH----HHHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 016800 197 -RIIEPLASRCAKF--RFKPLSE--EVM----SSRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (382)
Q Consensus 197 -~l~~~l~sr~~~i--~~~~~~~--~~~----~~~l~~~~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~ 263 (382)
+.-+.|--|..++ +++|+.+ +++ ..++++.++..|. .++++++..+..+. .||+|.+.|.++.++..
T Consensus 294 G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 294 GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 2445555566644 4444443 343 3455555555544 58999999988765 89999999999998877
Q ss_pred c-CCCCChhhHh
Q 016800 264 F-GSSITSKDLI 274 (382)
Q Consensus 264 ~-~~~It~~~v~ 274 (382)
. +..|+.+++-
T Consensus 374 ~~~~~i~~~~l~ 385 (464)
T COG2204 374 SEGPEIEVEDLP 385 (464)
T ss_pred CCccccchhhcc
Confidence 6 4567766644
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-13 Score=122.17 Aligned_cols=175 Identities=13% Similarity=0.161 Sum_probs=109.7
Q ss_pred CccccccccCCCCCCCCccccccc--ccCCCCCchHHHHhhccccccCCchhhhhcCCCCCCcccCc-HHHHHHHHHHHH
Q 016800 2 RANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTLE 78 (382)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~g~-~~~~~~l~~~l~ 78 (382)
.+++++...++.+..|++.+++.. ..+...+.++...++++ .+.+|+........|+...+. ...+..+..+-.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~~k---~a~~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~~ 98 (259)
T PRK09183 22 ISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTR---MAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSF 98 (259)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCcHhhcccccCCCCCHHHHHHHhcCCc
Confidence 456777888899999999999999 33444444555555544 889999766666666655553 345555543211
Q ss_pred cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH-----HHHHHHHhhhcCCCCCCCCCC
Q 016800 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-----KIKTFAAVAVGSGQRRGGYPC 153 (382)
Q Consensus 79 ~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 153 (382)
-.+..+++|+||+|+|||+++.+++..+... ...+..++..+.. ..+.. .+........
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~~~~l~--~~l~~a~~~~~~~~~~~~~~----------- 162 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTTAADLL--LQLSTAQRQGRYKTTLQRGV----------- 162 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeHHHHH--HHHHHHHHCCcHHHHHHHHh-----------
Confidence 2233469999999999999999998876322 2334444432211 01100 0111110000
Q ss_pred CCcEEEEEeCCCCC--CHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
....++||||++.. +...++.|+.+++.......+|+++|.+
T Consensus 163 ~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 163 MAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred cCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 14569999999875 5566778999998766555688888764
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.6e-12 Score=130.38 Aligned_cols=124 Identities=12% Similarity=0.157 Sum_probs=85.1
Q ss_pred CcEEEEEeCCCCCCHH-----HHHHHHHHHHhc-----CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHH
Q 016800 155 PYKIIILDEADSMTED-----AQNALRRTMETY-----SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSS 221 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-----~~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~ 221 (382)
.+.||+|||+|.+... ..+.|+..|+.. ..++.+|.+||.++.++|++++ |+. .|.++.|+..+..+
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence 5679999999999643 246677777632 3456778888999999999998 776 78898888877777
Q ss_pred HHHHHHHHhCCCCCHH--HHHHHHHhcCC-CHHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 222 RVLHICNEEGLNLDAE--ALSTLSSISQG-DLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 222 ~l~~~~~~~~~~~~~~--~~~~l~~~s~g-dlr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
++.......|+.+.++ .++.+++.+.| +.+++.+++..++..+ ...|+.+++..++.
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 6654444445555543 36778887754 3344444444444443 35688888887763
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=114.54 Aligned_cols=173 Identities=21% Similarity=0.233 Sum_probs=108.8
Q ss_pred cccCcHHHHHHHHHHHH-------c---CC--------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 62 DVAHQEEVVRVLTNTLE-------T---AN--------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-------~---~~--------~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.++||+++++.+...+. . .. ..++||+||||+|||++|+++++.+. ..+..+++..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~------~pf~~~da~~ 151 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN------VPFAIADATT 151 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC------CCeEEechhh
Confidence 46899999998876652 1 11 23699999999999999999998873 2333333322
Q ss_pred Ccc----hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc---
Q 016800 124 DRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY--- 182 (382)
Q Consensus 124 ~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~--- 182 (382)
... -......+......... .+....+.+|+|||+|.+++ ..|+.|+++||..
T Consensus 152 L~~~gyvG~d~e~~L~~~~~~~~~------~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~ 225 (413)
T TIGR00382 152 LTEAGYVGEDVENILLKLLQAADY------DVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVAN 225 (413)
T ss_pred ccccccccccHHHHHHHHHHhCcc------cHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhcccee
Confidence 110 01122222222111100 00111445999999999976 5899999999732
Q ss_pred ----------CCceEEEEeecCc---------------------------c-----------------------ccchhh
Q 016800 183 ----------SKVTRFFFICNYI---------------------------S-----------------------RIIEPL 202 (382)
Q Consensus 183 ----------~~~~~~Il~~~~~---------------------------~-----------------------~l~~~l 202 (382)
..++.+|+|+|-. . .+.|.+
T Consensus 226 v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf 305 (413)
T TIGR00382 226 VPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF 305 (413)
T ss_pred cccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH
Confidence 1234456555430 0 034667
Q ss_pred hcccc-eEEecCCCHHHHHHHHHH----HHHH-------hCC--CCCHHHHHHHHHhc
Q 016800 203 ASRCA-KFRFKPLSEEVMSSRVLH----ICNE-------EGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 203 ~sr~~-~i~~~~~~~~~~~~~l~~----~~~~-------~~~--~~~~~~~~~l~~~s 246 (382)
..|+. ++.|.|++.+++.+++.. +.++ .|+ .+++++++.|++.+
T Consensus 306 lgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 306 IGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred hCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 77886 779999999999998865 2221 244 47899999999875
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-12 Score=105.65 Aligned_cols=167 Identities=22% Similarity=0.331 Sum_probs=110.2
Q ss_pred CCCcccCcHHHHHHHHHHHH-----------cC-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-
Q 016800 59 QVKDVAHQEEVVRVLTNTLE-----------TA-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (382)
..+|+-|.++.++.|...+- -| ++|. +|+|||||+|||.+|++.+.+.. ..|+.+-++..
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLAgPQLV 242 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLAGPQLV 242 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhcchHHH
Confidence 56788888988888877662 22 2333 99999999999999999998762 33333333211
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH---hc--C
Q 016800 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME---TY--S 183 (382)
Q Consensus 125 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le---~~--~ 183 (382)
.+..-++..+. .... ..+.||+|||+|.+. .+.|.-.+.++. .+ .
T Consensus 243 QMfIGdGAkLVRDAFa----LAKE----------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFA----LAKE----------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred hhhhcchHHHHHHHHH----Hhhc----------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 12222333221 1111 155799999999873 245555555554 33 3
Q ss_pred CceEEEEeecCccccchhhhccc--c-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcC
Q 016800 184 KVTRFFFICNYISRIIEPLASRC--A-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQ 247 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~sr~--~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~ 247 (382)
..+.+|..||..+-+.|++.+-. . .++|+-|+.+....+++-...+.++ +++ ..+.+++.++
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTd 374 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTD 374 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhccc
Confidence 56778999999999999987643 3 7999999988888888766665554 333 3667777664
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=117.00 Aligned_cols=215 Identities=18% Similarity=0.184 Sum_probs=137.6
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcC-----CCCCCCceEEeecCCCcchHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFG-----PELYKSRVLELNASDDRGINVV 130 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 130 (382)
..|++++|+...++.+.+.+..- ...++||+|++||||+.+|+++...+.. ....+..++.+||.... ...+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~-e~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA-ESLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC-hhhH
Confidence 36889999988888877776532 2335999999999999999999986210 11234578999998643 2222
Q ss_pred HHHHHHHHHhhhcCC---CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc
Q 016800 131 RTKIKTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS 196 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~---~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~ 196 (382)
...+-........+. ...+.++......++|||++.|+...|..|++.+++.. .++++|++++..-
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 222211111111010 11122333456799999999999999999999998642 2457888876532
Q ss_pred -c------cchhhhcccc--eEEecCCCH--HHHHHHHHHHHHH----hCCCCCHHHHH-------HHHHh-cCCCHHHH
Q 016800 197 -R------IIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EGLNLDAEALS-------TLSSI-SQGDLRRA 253 (382)
Q Consensus 197 -~------l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~~----~~~~~~~~~~~-------~l~~~-s~gdlr~a 253 (382)
. +.+.+-.|+. .+.++|+.+ +|+..++...+.+ .+..++++++. .+..+ ..||+|.+
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 1 2234444544 677777765 5666655554443 56667877763 33333 38999999
Q ss_pred HHHHHHHHHhcC----CCCChhhH
Q 016800 254 ITYLQGAARLFG----SSITSKDL 273 (382)
Q Consensus 254 ~~~l~~~~~~~~----~~It~~~v 273 (382)
.+.++.++.+.. ..|+.+++
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHh
Confidence 999999887642 34665554
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=101.52 Aligned_cols=159 Identities=22% Similarity=0.312 Sum_probs=105.8
Q ss_pred CCCCCcccC-cHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 57 PKQVKDVAH-QEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 57 p~~~~~~~g-~~~~~~~l~~~l~~~-------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
|.+.-+.+| .++.++.+...++-. .+..+|+|||||+|||.+|++++.+. ...++.+.++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsgs 215 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGS 215 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEechH
Confidence 544445665 577777777766432 33349999999999999999999986 3456666554
Q ss_pred CCc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh-----cCC
Q 016800 123 DDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-----YSK 184 (382)
Q Consensus 123 ~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~-----~~~ 184 (382)
... .+..-......++-.+... .+.++++||+|.+. .+.|.-.+.++.. ...
T Consensus 216 elvqk~igegsrmvrelfvmareh----------apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREH----------APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhc----------CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 311 0111111222222221111 34699999999883 3456666666653 346
Q ss_pred ceEEEEeecCccccchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhC
Q 016800 185 VTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEG 231 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~ 231 (382)
+..+|++||..+-+++++.+-.. .++|+||+.+...++|+-...+.+
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn 335 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 335 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc
Confidence 78899999999999999987443 799999999999888876655543
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-11 Score=99.59 Aligned_cols=190 Identities=18% Similarity=0.230 Sum_probs=133.0
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHH---HcCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTL---ETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l---~~~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
.+.|..+.+++|-+.+.+.|.+-. .+|.+. |+|++|..|+||+++++++..++...+ ...++++..+......
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g---lrLVEV~k~dl~~Lp~ 129 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEG---LRLVEVDKEDLATLPD 129 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcC---CeEEEEcHHHHhhHHH
Confidence 344567889999888887764432 344444 499999999999999999999986654 3478887766544444
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHH----hcCCceEEEEeecCccccchh---
Q 016800 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA-QNALRRTME----TYSKVTRFFFICNYISRIIEP--- 201 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le----~~~~~~~~Il~~~~~~~l~~~--- 201 (382)
+-+.++... .+-||++|+...-..+. ...|...|| ..|.++.|..++|..+.+...
T Consensus 130 l~~~Lr~~~----------------~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~d 193 (287)
T COG2607 130 LVELLRARP----------------EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKD 193 (287)
T ss_pred HHHHHhcCC----------------ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhh
Confidence 444443311 56699999987654443 344444444 567888888888765544322
Q ss_pred -------------------hhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHH-----HHHHhcCCCHHHHHHH
Q 016800 202 -------------------LASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS-----TLSSISQGDLRRAITY 256 (382)
Q Consensus 202 -------------------l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~l~~~s~gdlr~a~~~ 256 (382)
+..|+. .+.|.|++.++-..++...+++.++.++++.++ ......+.+-|.|.+.
T Consensus 194 n~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF 273 (287)
T COG2607 194 NEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQF 273 (287)
T ss_pred CCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHH
Confidence 233554 689999999999999999999999998775543 3334556778888888
Q ss_pred HHHHHH
Q 016800 257 LQGAAR 262 (382)
Q Consensus 257 l~~~~~ 262 (382)
++.++.
T Consensus 274 ~~~~~g 279 (287)
T COG2607 274 IRDLAG 279 (287)
T ss_pred HHHHHh
Confidence 877664
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.7e-11 Score=117.63 Aligned_cols=214 Identities=14% Similarity=0.089 Sum_probs=132.1
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-----------CCCC----------------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-----------GPEL---------------- 111 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-----------~~~~---------------- 111 (382)
.|.+++||++++..+...+.+++..++||.|++|+|||++|+++++.+- |...
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 4679999999999998888887777799999999999999999999871 1100
Q ss_pred --CCCceEEeecCCC----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC--
Q 016800 112 --YKSRVLELNASDD----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-- 183 (382)
Q Consensus 112 --~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-- 183 (382)
....++.+..... .+...+...+.. .. .....+.+......+++|||++.+++..++.|+..|++..
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~---g~--~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~ 156 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALRE---GE--KAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNR 156 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhc---CC--eeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEE
Confidence 0122333222211 000111111110 00 0001122223355799999999999999999999998642
Q ss_pred -----------CceEEEEeecCc-cccchhhhcccc-eEEecCCC-HHHHHHHHHHHHH---------------------
Q 016800 184 -----------KVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLS-EEVMSSRVLHICN--------------------- 228 (382)
Q Consensus 184 -----------~~~~~Il~~~~~-~~l~~~l~sr~~-~i~~~~~~-~~~~~~~l~~~~~--------------------- 228 (382)
..+.+|.++|.. ..+.+.+.+|+. .+.+..+. .++..+++.+...
T Consensus 157 v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (633)
T TIGR02442 157 VEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRN 236 (633)
T ss_pred EEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHH
Confidence 235556665643 357789999997 46666554 3333333332110
Q ss_pred --------HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 229 --------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 229 --------~~~~~~~~~~~~~l~~~s---~-gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
...+.++++.++.++..+ + ..+|..+..+..+...+ ...++.+||..++
T Consensus 237 ~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~ 301 (633)
T TIGR02442 237 RIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAA 301 (633)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 014567888888887755 2 13677666665543333 4679999997766
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-11 Score=114.62 Aligned_cols=202 Identities=20% Similarity=0.179 Sum_probs=134.3
Q ss_pred CCCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+.+++|+...++.+.+.++.-. ..+++|+|++||||+++|+++...... ....++.+||..... ..+...+-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~~~-~~~e~~lfG 260 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAALPE-SLAESELFG 260 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccCCh-HHHHHHhcC
Confidence 56789999888877777665432 224999999999999999999987421 245788899876421 222211100
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------- 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------- 196 (382)
.......+. ...+.+.......++|||++.|+.+.|..|++++++.. ..+++|++++..-
T Consensus 261 ~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 340 (509)
T PRK05022 261 HVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG 340 (509)
T ss_pred ccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence 000000000 01112233455689999999999999999999998643 2568888886532
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHHHH----HHHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLH----ICNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~----~~~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+...+..|.. .|.++|+.+ +++..++.. .+.+.| +.++++++..|..+. .||+|.+.+.++.++..+
T Consensus 341 ~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 341 RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 24455555654 577777764 455554443 333333 468999999998876 899999999999988765
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-10 Score=103.66 Aligned_cols=167 Identities=18% Similarity=0.162 Sum_probs=106.8
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
..+.|..-.+.+..++....+..++..++ +++|.||||||||++++.+++.+. ..++.+++.......++-.
T Consensus 37 ~~~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l~------~~~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 37 DEHVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARLN------WPCVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHHC------CCeEEEEecCCCChhhcCC
Confidence 33455544566777777777777776544 699999999999999999999984 4445555443221111100
Q ss_pred H-HHHHHHhhhcCCCCCCCCC--CCCcEEEEEeCCCCCCHHHHHHHHHHHHh--------------cCCceEEEEeecCc
Q 016800 133 K-IKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSMTEDAQNALRRTMET--------------YSKVTRFFFICNYI 195 (382)
Q Consensus 133 ~-l~~~~~~~~~~~~~~~~~~--~~~~~vliiDe~d~l~~~~~~~Ll~~le~--------------~~~~~~~Il~~~~~ 195 (382)
. ...............+.+. .....++++||++..+++.++.|..+||. +++..++|.++|..
T Consensus 109 ~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 109 KDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred CceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 0 0000000000000000110 01446899999999999999999999983 22456778888864
Q ss_pred c------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHH
Q 016800 196 S------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHIC 227 (382)
Q Consensus 196 ~------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~ 227 (382)
. .+..+..+|+. ++.+..|+.++-.+++...+
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 3 26789999997 56899999999999886543
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=112.94 Aligned_cols=180 Identities=21% Similarity=0.214 Sum_probs=123.7
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHc----------CC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLET----------AN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~----------~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
++-++..|+|+.|.+.+.+.+...+-= -+ +..+|+.||||+|||.+++++|.+. ...++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~------~atff~iS 218 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES------GATFFNIS 218 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh------cceEeecc
Confidence 445567889999988888777665421 12 2239999999999999999999987 34555555
Q ss_pred cCCCcch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HH-HHHHHHHHH---hcC
Q 016800 121 ASDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DA-QNALRRTME---TYS 183 (382)
Q Consensus 121 ~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~-~~~Ll~~le---~~~ 183 (382)
++...+. ......+..+...+... .+.|++|||+|.+-. .. .+.|+...- .+.
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~----------qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~ 288 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSL----------QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPD 288 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhc----------CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCC
Confidence 5432111 11122222222222111 567999999998731 11 223333322 234
Q ss_pred CceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 016800 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g 248 (382)
+.+.+|.+||.+..++.+++.|+. ++.++.|+.+....++.+.+.+.+..+.+..+..|++.++|
T Consensus 289 drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 289 DRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred CeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 567777788999999999999998 77899999999999999999888777888999999987744
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.4e-11 Score=120.14 Aligned_cols=218 Identities=22% Similarity=0.261 Sum_probs=137.9
Q ss_pred chhhhhcCC--CCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 49 QPWVEKYRP--KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 49 ~~~~~k~~p--~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
..+.+...+ ..|++++|+...++.+.+.++.- ...+++|+|++|||||++|+++...... ....++.++|...
T Consensus 362 ~~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r---~~~~~v~i~c~~~ 438 (686)
T PRK15429 362 LALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR---NNRRMVKMNCAAM 438 (686)
T ss_pred HHHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC---CCCCeEEEecccC
Confidence 334444444 47889999988887776655532 2235999999999999999999886522 2357788888754
Q ss_pred cchHHHHHHHHHHHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEe
Q 016800 125 RGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFI 191 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~ 191 (382)
. ...+...+-........+. ...+.++.....+++|||++.++.+.|..|+..+++.. ..+++|++
T Consensus 439 ~-~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~ 517 (686)
T PRK15429 439 P-AGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAA 517 (686)
T ss_pred C-hhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEe
Confidence 2 1222211100000000000 00111222245699999999999999999999998642 35678888
Q ss_pred ecCcc-------ccchhhhcccc--eEEecCCCH--HHHHHHHHH----HHHHhCC---CCCHHHHHHHHHhc-CCCHHH
Q 016800 192 CNYIS-------RIIEPLASRCA--KFRFKPLSE--EVMSSRVLH----ICNEEGL---NLDAEALSTLSSIS-QGDLRR 252 (382)
Q Consensus 192 ~~~~~-------~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~----~~~~~~~---~~~~~~~~~l~~~s-~gdlr~ 252 (382)
++..- .+...+-.|.. .|.++|+.+ +++..++.. .+.+.|. .+++++++.+..+. .||+|.
T Consensus 518 t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrE 597 (686)
T PRK15429 518 TNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRE 597 (686)
T ss_pred CCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHH
Confidence 86532 12333445544 567777764 555544443 3443343 47899999988765 899999
Q ss_pred HHHHHHHHHHhc-CCCCCh
Q 016800 253 AITYLQGAARLF-GSSITS 270 (382)
Q Consensus 253 a~~~l~~~~~~~-~~~It~ 270 (382)
+.+.++.++..+ +..|+.
T Consensus 598 L~~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 598 LENVIERAVLLTRGNVLQL 616 (686)
T ss_pred HHHHHHHHHHhCCCCcccc
Confidence 999999988765 345554
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=108.15 Aligned_cols=217 Identities=19% Similarity=0.191 Sum_probs=142.8
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHcC-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLETA-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
...+.+|++++|....+..+...++.. +.+ .+|+.|++||||..+|+++.+.- .-.+.+|+.+||... +..-+.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S---~R~~~PFIaiNCaAi-Pe~LlE 313 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLS---PRANGPFIAINCAAI-PETLLE 313 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcC---cccCCCeEEEecccC-CHHHHH
Confidence 344568999999977776666665543 323 39999999999999999998753 334568999999864 333333
Q ss_pred HHHHHHHHhhhcCCC---CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-
Q 016800 132 TKIKTFAAVAVGSGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS- 196 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~---~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~- 196 (382)
..+-.+...+..+.. +.+.++.+....+++||+..|+...|..|++.|++.. -.+++|.+||..-
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~ 393 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLE 393 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHH
Confidence 333222222222221 2334455677799999999999999999999998652 4677888887532
Q ss_pred c------cchhhhcccce--EEecCCCH--HHHHHHHHHHH----HHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHH
Q 016800 197 R------IIEPLASRCAK--FRFKPLSE--EVMSSRVLHIC----NEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQ 258 (382)
Q Consensus 197 ~------l~~~l~sr~~~--i~~~~~~~--~~~~~~l~~~~----~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~ 258 (382)
+ .-..|--|..+ +.++|+-+ +++..+..+.. .+.+. .++++++..+.++. .||+|.+-|.++
T Consensus 394 ~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviE 473 (560)
T COG3829 394 KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIE 473 (560)
T ss_pred HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHH
Confidence 1 22333335553 45555542 45544444333 33332 37899998888765 899999999999
Q ss_pred HHHHhc--CCCCChhhHh
Q 016800 259 GAARLF--GSSITSKDLI 274 (382)
Q Consensus 259 ~~~~~~--~~~It~~~v~ 274 (382)
.+.... +..|+.+++-
T Consensus 474 R~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 474 RAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHhccCCcceeehhhcc
Confidence 988644 3446655544
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=111.47 Aligned_cols=170 Identities=21% Similarity=0.196 Sum_probs=120.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC----------CC--C-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA----------NC--P-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~----------~~--~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
..++|+-|-.++++.+...+.-. +. + .+|+|||||||||.+|.+++... +..++.+.+++.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~~~fisvKGPEl 737 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------NLRFISVKGPEL 737 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCHHH
Confidence 57889999988888888777432 22 2 39999999999999999999875 567777776642
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc--CCc
Q 016800 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--SKV 185 (382)
Q Consensus 125 ~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~--~~~ 185 (382)
. +...+|+.+.... . .++.|+++||+|.+. ....|.|+.-|+.- -..
T Consensus 738 L~KyIGaSEq~vR~lF~rA~----~----------a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQ----S----------AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred HHHHhcccHHHHHHHHHHhh----c----------cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 1 1233444333321 1 177899999999884 34678888888743 345
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g 248 (382)
+.++.+|..++.+++++.+ |.. .+.++.|++.+..++++......... ++-.++.++..++|
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDG 868 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCC
Confidence 5566667788999999987 444 68899999999999998776643322 33346777777655
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-10 Score=101.07 Aligned_cols=217 Identities=15% Similarity=0.096 Sum_probs=130.2
Q ss_pred CcccCcHHHHH---HHHHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVR---VLTNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~---~l~~~l~---~~~~~~lll~Gp~G~GKt~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+.++|.+.+.+ .|...+. ..++|+++|+|++|.|||++++.+.+..... +.....++.+.++...+...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 45677766654 4444454 4578889999999999999999999865321 1112356666655433333332
Q ss_pred HHHHHHHHhhhcCCCCCC--------CCCCCCcEEEEEeCCCCC---CHHHHHHHHHHHHhcC--CceEEEEeecC----
Q 016800 132 TKIKTFAAVAVGSGQRRG--------GYPCPPYKIIILDEADSM---TEDAQNALRRTMETYS--KVTRFFFICNY---- 194 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~--------~~~~~~~~vliiDe~d~l---~~~~~~~Ll~~le~~~--~~~~~Il~~~~---- 194 (382)
..+-.............. ....-+.+++||||+|.+ +...|..++..+.... -...+|+++..
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH
Confidence 222221111111100000 001126789999999996 3333444444443222 23345565532
Q ss_pred ccccchhhhcccceEEecCCCHH-HHHHHHHHHHHHhCC----C-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----
Q 016800 195 ISRIIEPLASRCAKFRFKPLSEE-VMSSRVLHICNEEGL----N-LDAEALSTLSSISQGDLRRAITYLQGAARLF---- 264 (382)
Q Consensus 195 ~~~l~~~l~sr~~~i~~~~~~~~-~~~~~l~~~~~~~~~----~-~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---- 264 (382)
.-.-++.+.+|+..+.+++...+ +...+|...-..... . -+++.+..|...|+|.++....++..++..+
T Consensus 194 al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 194 ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSG 273 (302)
T ss_pred HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcC
Confidence 23356899999999999888754 555555443322111 1 2567779999999999999999999888776
Q ss_pred CCCCChhhHhhhh
Q 016800 265 GSSITSKDLISVS 277 (382)
Q Consensus 265 ~~~It~~~v~~~~ 277 (382)
...||.+.+..+-
T Consensus 274 ~E~It~~~l~~~~ 286 (302)
T PF05621_consen 274 EERITREILDKID 286 (302)
T ss_pred CceecHHHHhhCC
Confidence 3568888776643
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-11 Score=113.68 Aligned_cols=198 Identities=22% Similarity=0.212 Sum_probs=130.4
Q ss_pred CCCCcccCcHHHHHHHHHHH---Hc--------CCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-
Q 016800 58 KQVKDVAHQEEVVRVLTNTL---ET--------ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l---~~--------~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (382)
.+|.|+.|.+++++.+...+ ++ +++|. ++++||||||||.+|++++-+. +.+++.+..++.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA------~VPFf~iSGS~FV 220 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDFV 220 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc------CCCceeccchhhh
Confidence 58899999999887776655 32 24555 9999999999999999999987 345555555442
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcCC-
Q 016800 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYSK- 184 (382)
Q Consensus 125 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~~- 184 (382)
.+...+|+.....-.. -+.|++|||+|.... +..|.|+--|+....
T Consensus 221 emfVGvGAsRVRdLF~qAkk~--------------aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKN--------------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhcc--------------CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 2345556555443211 346999999998842 346777777777663
Q ss_pred -ceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcC----CCHHHHHH
Q 016800 185 -VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQ----GDLRRAIT 255 (382)
Q Consensus 185 -~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~----gdlr~a~~ 255 (382)
.+.++..||.++-++++|.+ |+. .+..+.|+-....++++-.++. +.++++ .+..+++.+. .|+-..+|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr~tpGfsGAdL~nl~N 364 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--KPLAEDVDLKKIARGTPGFSGADLANLLN 364 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhhhCCCcccchHhhhHH
Confidence 44555567888889899886 554 7888889989999998855544 333322 2444666654 45544444
Q ss_pred HHHHHHHhc-CCCCChhhHhhhh
Q 016800 256 YLQGAARLF-GSSITSKDLISVS 277 (382)
Q Consensus 256 ~l~~~~~~~-~~~It~~~v~~~~ 277 (382)
...-.+.-. ...|++.++.++.
T Consensus 365 EAal~aar~n~~~i~~~~i~ea~ 387 (596)
T COG0465 365 EAALLAARRNKKEITMRDIEEAI 387 (596)
T ss_pred HHHHHHHHhcCeeEeccchHHHH
Confidence 433222221 4567776666554
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-11 Score=108.34 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=76.3
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHHHhcC----------CceEEEEee----cCccccchhhhcccc-
Q 016800 155 PYKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~----------~~~~~Il~~----~~~~~l~~~l~sr~~- 207 (382)
...||+|||+|++.. ..|+.|++++|... .+..||+.+ ..+..+.|.+.-|+.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 567999999999852 36899999999532 344455544 345668999999998
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS--------QGDLRRAITYLQGAA 261 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s--------~gdlr~a~~~l~~~~ 261 (382)
++.+++++.+++..+|.. .++.+|+ .++++++..|++.+ +--.|.+...++...
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 789999999999998833 2334565 47899999998765 223455555555443
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-11 Score=100.80 Aligned_cols=173 Identities=19% Similarity=0.247 Sum_probs=114.0
Q ss_pred CCCcccCcHHHHHHHHHHHHcC------------CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 59 QVKDVAHQEEVVRVLTNTLETA------------NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~------------~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
+..|+-|-++.++.++..++.. .+| .+|+|||||+|||.+|+++++.. +..|+.+-++...
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------dacfirvigselv 248 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------DACFIRVIGSELV 248 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------CceEEeehhHHHH
Confidence 5678888888888887776532 222 39999999999999999999875 4455555544321
Q ss_pred c--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH-----hcCCceE
Q 016800 126 G--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME-----TYSKVTR 187 (382)
Q Consensus 126 ~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le-----~~~~~~~ 187 (382)
. +..-...+..++..+... +-.++++||+|.+. .+.|.-.+.++. ++..+..
T Consensus 249 qkyvgegarmvrelf~martk----------kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTK----------KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred HHHhhhhHHHHHHHHHHhccc----------ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 0 111112233333332221 55799999999873 345666666665 4567889
Q ss_pred EEEeecCccccchhhhccc--c-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRC--A-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD 249 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~--~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gd 249 (382)
++++||.++.+.+++.+-. . .++|..|+-+-...+++-.++... ++.+. .+.|+++|.++
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms--verdir~ellarlcpns 382 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS--VERDIRFELLARLCPNS 382 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc--cccchhHHHHHhhCCCC
Confidence 9999999999999998743 3 789998888777777654444322 33332 45667766443
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=113.51 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=87.0
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------------------CceEEEEeecCc--cccchhhhcccc---
Q 016800 154 PPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA--- 207 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sr~~--- 207 (382)
+...+++|||++.|++..|..|++.|++.. -.+++|+++|.. ..+.+.+++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 355799999999999999999999997531 245677777754 468899999987
Q ss_pred -eEEecC---CCHHH---HHHHHHHHHHHhC--CCCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHHhc----
Q 016800 208 -KFRFKP---LSEEV---MSSRVLHICNEEG--LNLDAEALSTLSSIS----------QGDLRRAITYLQGAARLF---- 264 (382)
Q Consensus 208 -~i~~~~---~~~~~---~~~~l~~~~~~~~--~~~~~~~~~~l~~~s----------~gdlr~a~~~l~~~~~~~---- 264 (382)
.+.|+. .+.+. +..++.+.+++.| ..++++++..+++.+ ..+.|.+-+++..+...+
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 234432 23443 4455555565653 358999998888532 245788888887764333
Q ss_pred CCCCChhhHhhhhC
Q 016800 265 GSSITSKDLISVSG 278 (382)
Q Consensus 265 ~~~It~~~v~~~~~ 278 (382)
...|+.++|.+++.
T Consensus 376 ~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 376 KVYVTAEHVLKAKK 389 (608)
T ss_pred CceecHHHHHHHHH
Confidence 35789999887764
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.3e-11 Score=102.84 Aligned_cols=146 Identities=22% Similarity=0.335 Sum_probs=101.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
-++.|+-|.+..++.+...++- | ++|. +++||+||||||.+|+++|+.. +..|+.+-+++.
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT------SATFlRvvGseL 255 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT------SATFLRVVGSEL 255 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc------chhhhhhhhHHH
Confidence 3778998999999999887743 3 2233 9999999999999999999875 234444333321
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc-----
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY----- 182 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~----- 182 (382)
.+..-+++.+.-.... ...|++|||+|.+. .+.|.-++.++...
T Consensus 256 iQkylGdGpklvRqlF~vA~e~--------------apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds 321 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEH--------------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhc--------------CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc
Confidence 1223333333222111 34699999999883 23456666666532
Q ss_pred CCceEEEEeecCccccchhhhccc--c-eEEecCCCHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRC--A-KFRFKPLSEEVMSSRV 223 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~--~-~i~~~~~~~~~~~~~l 223 (382)
...+.+|++||..+.+.|++.+-. . .|.|+.|+...-+.++
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf 365 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIF 365 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeE
Confidence 457889999999999999998744 3 7999999888777665
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-12 Score=104.33 Aligned_cols=118 Identities=27% Similarity=0.380 Sum_probs=68.5
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC--------C-----c
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD--------D-----R 125 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~--------~-----~ 125 (382)
.|.+++||+.+++.+.-....+ .|+||+||||+|||++|+.+...+- ........++.... . .
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP--~l~~~e~le~~~i~s~~~~~~~~~~~~~~ 76 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLP--PLTEEEALEVSKIYSVAGLGPDEGLIRQR 76 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS----CCEECCESS--S-TT---S---EEEE--
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCC--CCchHHHhhhccccccccCCCCCceecCC
Confidence 4789999999999998777764 3799999999999999999998762 11111111111000 0 0
Q ss_pred chHHHHH--HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 126 GINVVRT--KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 126 ~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
....... ....+... +.....+.+..+.+.|+++||+..+++...+.|+..+|+.
T Consensus 77 Pfr~phhs~s~~~liGg--g~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 77 PFRAPHHSASEAALIGG--GRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp -EEEE-TT--HHHHHEE--GGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred CcccCCCCcCHHHHhCC--CcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 0000000 00111100 0111233334446779999999999999999999999964
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=104.92 Aligned_cols=210 Identities=23% Similarity=0.240 Sum_probs=140.4
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+.++||+...+..+.+.++--... .+||.|++||||.-+|+++.+.-. -....++.+||+.. +.......+-.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~---R~~kPfV~~NCAAl-PesLlESELFG 296 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSP---RRDKPFVKLNCAAL-PESLLESELFG 296 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCc---ccCCCceeeecccc-chHHHHHHHhc
Confidence 5678999998888887777543222 399999999999999999988642 23467899999864 32333332222
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS------- 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------- 196 (382)
....++.+. ...+.++.++...+++||+..|+...|.+|++.+.+.. -.+++|.+||..-
T Consensus 297 HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G 376 (550)
T COG3604 297 HEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDG 376 (550)
T ss_pred ccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcC
Confidence 222222221 13455666677899999999999999999999998642 3567888887532
Q ss_pred ccchhhhcccceE--EecCCCH--HHH----HHHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 RIIEPLASRCAKF--RFKPLSE--EVM----SSRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 ~l~~~l~sr~~~i--~~~~~~~--~~~----~~~l~~~~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
+.-..+--|..++ .++|+-+ +++ ..++++.....|. .+++++++.+..+. .||+|.+.|.++.++..+
T Consensus 377 ~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 377 EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 1223333355543 4444432 222 3344444445554 58999999998875 899999999999999866
Q ss_pred CCCCChhh
Q 016800 265 GSSITSKD 272 (382)
Q Consensus 265 ~~~It~~~ 272 (382)
+..++..+
T Consensus 457 ~~~~~~~d 464 (550)
T COG3604 457 GRLTRRGD 464 (550)
T ss_pred cccCCCcc
Confidence 55555444
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-10 Score=108.79 Aligned_cols=212 Identities=20% Similarity=0.244 Sum_probs=138.3
Q ss_pred CCCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+.+++|....+..+.+.+.... ...++|+|++||||+++|+++...... ....++.++|... ....+...+-.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~i~i~c~~~-~~~~~~~~lfg 211 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR---AKAPFIALNMAAI-PKDLIESELFG 211 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC---CCCCeEeeeCCCC-CHHHHHHHhcC
Confidence 45678898777766665554322 223999999999999999999886422 2357888898765 22222222111
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------c
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~ 196 (382)
.......+. ...+.+.......++|||++.|+...|..|++++++.. .++++|++++.. .
T Consensus 212 ~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 000000000 01112223345689999999999999999999998642 245788887643 2
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHHHHHH----HHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+.+.+..|+. .+.++|+.. +++..++...+ ...+. .++++++..|..+. .||+|.+.+.++.+...+
T Consensus 292 ~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 34566777765 667777654 45555444433 33332 47999999988876 899999999999988765
Q ss_pred -CCCCChhhHh
Q 016800 265 -GSSITSKDLI 274 (382)
Q Consensus 265 -~~~It~~~v~ 274 (382)
+..|+.+++.
T Consensus 372 ~~~~i~~~~l~ 382 (469)
T PRK10923 372 AGQEVLIQDLP 382 (469)
T ss_pred CCCcccHHHCc
Confidence 5678877764
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=103.86 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
..+.+++..+. +++|+||+|||||++|+++++.+. ..++.++... +.. . +..+.. .......+.
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg------~pfv~In~l~----d~~-~-L~G~i~--~~g~~~dgp 173 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD------LDFYFMNAIM----DEF-E-LKGFID--ANGKFHETP 173 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecCh----HHH-h-hccccc--ccccccchH
Confidence 44555665554 599999999999999999999873 3445454211 000 0 000000 000000000
Q ss_pred C--CCCCcEEEEEeCCCCCCHHHHHHHHHHHHh-----------cCCceEEEEeecCc-----------cccchhhhccc
Q 016800 151 Y--PCPPYKIIILDEADSMTEDAQNALRRTMET-----------YSKVTRFFFICNYI-----------SRIIEPLASRC 206 (382)
Q Consensus 151 ~--~~~~~~vliiDe~d~l~~~~~~~Ll~~le~-----------~~~~~~~Il~~~~~-----------~~l~~~l~sr~ 206 (382)
+ ......+++|||++.++++.+..|...+++ .++++++|+++|.. ..+.+++++|+
T Consensus 174 Ll~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF 253 (383)
T PHA02244 174 FYEAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF 253 (383)
T ss_pred HHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc
Confidence 0 001446999999999999999999999973 24678899999873 45789999999
Q ss_pred ceEEecCCCH
Q 016800 207 AKFRFKPLSE 216 (382)
Q Consensus 207 ~~i~~~~~~~ 216 (382)
..+.|..++.
T Consensus 254 v~I~~dyp~~ 263 (383)
T PHA02244 254 APIEFDYDEK 263 (383)
T ss_pred EEeeCCCCcH
Confidence 9999988873
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-10 Score=104.74 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=76.3
Q ss_pred CcEEEEEeCCCCCC------------HHHHHHHHHHHHhcC----------CceEEEEee----cCccccchhhhcccc-
Q 016800 155 PYKIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~------------~~~~~~Ll~~le~~~----------~~~~~Il~~----~~~~~l~~~l~sr~~- 207 (382)
...||+|||+|++. ...|+.|++++|... .+..||+.+ ..+..+.|.+.-|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 56799999999984 236899999999632 334455543 345668899999998
Q ss_pred eEEecCCCHHHHHHHHHH----H-------HHHhCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLH----I-------CNEEGL--NLDAEALSTLSSIS--------QGDLRRAITYLQGAA 261 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~----~-------~~~~~~--~~~~~~~~~l~~~s--------~gdlr~a~~~l~~~~ 261 (382)
++.+++++.+++..+|.. . ++.+|+ .+++++++.||+.+ +--.|.+...++..-
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 789999999999998843 2 334465 47899999998765 223455555555443
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-10 Score=107.54 Aligned_cols=212 Identities=20% Similarity=0.212 Sum_probs=136.5
Q ss_pred CCCcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
.+.+++|....+..+...+.. ....+++++|++|+||+++|+.+...... ....++.++|.... ...+...+-.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~v~v~c~~~~-~~~~~~~lfg 212 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR---KDKRFVAINCAAIP-ENLLESELFG 212 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc---CCCCeEEEECCCCC-hHHHHHHhcC
Confidence 456788887777766666653 22234899999999999999999876422 23467888887642 2222221110
Q ss_pred HHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------c
Q 016800 137 FAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (382)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~ 196 (382)
.......+. ...+........+++|||++.|+...|..|++++++.. ..+++|++++.. .
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 292 (445)
T TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292 (445)
T ss_pred CCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcC
Confidence 000000000 01112223356799999999999999999999998642 256788887654 2
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHH----HHHHHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRV----LHICNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l----~~~~~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+.+.+..|+. .+.++|+.. +++..++ .+.+...+ ..++++++..+..+. .||+|.+.+.++.++..+
T Consensus 293 ~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 293 TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 23444555655 567777654 3444433 33343334 358999999998876 899999999999988765
Q ss_pred -CCCCChhhHh
Q 016800 265 -GSSITSKDLI 274 (382)
Q Consensus 265 -~~~It~~~v~ 274 (382)
+..|+.+++.
T Consensus 373 ~~~~i~~~~l~ 383 (445)
T TIGR02915 373 EGNQITAEDLG 383 (445)
T ss_pred CCCcccHHHcC
Confidence 4567777653
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=102.01 Aligned_cols=134 Identities=22% Similarity=0.312 Sum_probs=89.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceEEeecCCCcc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~---~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (382)
+|++||||||||++++++|+.+--. .+.....+++|+....+ -.-+...++......... +.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~---------~~ 250 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDR---------GN 250 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCC---------Cc
Confidence 8999999999999999999998421 22334567777753211 111222222222211111 14
Q ss_pred cEEEEEeCCCCCCH---------------HHHHHHHHHHHhc--CCceEEEEeecCccccchhhhcccc-eEEecCCCHH
Q 016800 156 YKIIILDEADSMTE---------------DAQNALRRTMETY--SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEE 217 (382)
Q Consensus 156 ~~vliiDe~d~l~~---------------~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~ 217 (382)
.-.|+|||++.+.. .+.|+++.-|+.. .+++.++.++|-.+.++.++..|.. +....+|+..
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 56799999998731 2468888888853 4566555556777889999999999 6788899998
Q ss_pred HHHHHHHHHH
Q 016800 218 VMSSRVLHIC 227 (382)
Q Consensus 218 ~~~~~l~~~~ 227 (382)
.+..+++...
T Consensus 331 ai~~Ilksci 340 (423)
T KOG0744|consen 331 AIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHH
Confidence 8888886543
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-10 Score=109.98 Aligned_cols=202 Identities=19% Similarity=0.202 Sum_probs=145.7
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecCCC--
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASDD-- 124 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~~-- 124 (382)
.++.-|-..++-++|+++.+..+.+.+......|-++.|+||+|||.++..+|..+...++ .+..++.++....
T Consensus 160 lt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA 239 (786)
T COG0542 160 LTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA 239 (786)
T ss_pred hHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc
Confidence 3344456778999999999999999998888878999999999999999999999864332 2334455543221
Q ss_pred --cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEEEEeec
Q 016800 125 --RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 125 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
....+..+.++......... +..|+||||+|.+- .++.|.|...|... ...+|.+|+
T Consensus 240 GakyRGeFEeRlk~vl~ev~~~----------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~IGATT 307 (786)
T COG0542 240 GAKYRGEFEERLKAVLKEVEKS----------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRCIGATT 307 (786)
T ss_pred cccccCcHHHHHHHHHHHHhcC----------CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEEEEecc
Confidence 11122333333333222111 46799999999871 44778888888754 345666664
Q ss_pred C-----ccccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcC------CCHHHHHHHHH
Q 016800 194 Y-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQ------GDLRRAITYLQ 258 (382)
Q Consensus 194 ~-----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~------gdlr~a~~~l~ 258 (382)
. .-.-++++-+|++.+.+..|+.++...+|+-+..+ +++.++++++...+.+|. -=|.+|+.+++
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiD 387 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLD 387 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHH
Confidence 2 12356899999999999999999999999876654 578899999999998873 34678999999
Q ss_pred HHHHhc
Q 016800 259 GAARLF 264 (382)
Q Consensus 259 ~~~~~~ 264 (382)
.++...
T Consensus 388 eA~a~~ 393 (786)
T COG0542 388 EAGARV 393 (786)
T ss_pred HHHHHH
Confidence 888654
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-10 Score=104.55 Aligned_cols=155 Identities=23% Similarity=0.196 Sum_probs=99.7
Q ss_pred CcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
..++|+++++......+..++ |++|.||||+|||++++.+++.+ +.++..+.+.......++-.........
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~~~ 95 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAALL 95 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhhhh
Confidence 347889888888877777776 79999999999999999999998 3566777765433322221110000000
Q ss_pred --hhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------------CCceEEEEeecC-----ccccchh
Q 016800 141 --AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------------SKVTRFFFICNY-----ISRIIEP 201 (382)
Q Consensus 141 --~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~------------~~~~~~Il~~~~-----~~~l~~~ 201 (382)
........+....+-..++++||+++.++..+++|+..|++. +....+|.++|+ ...+.++
T Consensus 96 ~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA 175 (329)
T COG0714 96 LEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEA 175 (329)
T ss_pred ccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHH
Confidence 000000011111111149999999999999999999999972 123334444563 3457899
Q ss_pred hhccc-ceEEecCCCHHHHHHHH
Q 016800 202 LASRC-AKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 202 l~sr~-~~i~~~~~~~~~~~~~l 223 (382)
+.+|| ..+.++.|..++....+
T Consensus 176 ~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 176 LLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred HHhhEEEEEecCCCCchHHHHHH
Confidence 99999 68888888555444444
|
|
| >PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-11 Score=100.11 Aligned_cols=164 Identities=16% Similarity=0.212 Sum_probs=114.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
++|+|+.-.-+...++.+.+.+..++.....+..++..+.. . .+.+......+.. +++++|+|.++
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~---~~l~~~~~s~slF----------~~~klvii~~~ 66 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDD-I---DELLEELQSPSLF----------GDKKLVIIKNA 66 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-H-H---H-HTTTSTTTTSS----------SSEEEEEEE--
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCc-H---HHHHHHHhcCCcc----------CCCeEEEEecC
Confidence 68999999899999999999876665544555656555431 1 1122222222222 27899999998
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCceEEEEeec-Ccc---ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 016800 165 ----DSMTEDAQNALRRTMETYSKVTRFFFICN-YIS---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA 236 (382)
Q Consensus 165 ----d~l~~~~~~~Ll~~le~~~~~~~~Il~~~-~~~---~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (382)
+....+..+.|..+++.+++++.+|+.++ ..+ ++.+.+.+.+.++.|.++...++..|++..+++.|+.+++
T Consensus 67 ~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~ 146 (172)
T PF06144_consen 67 PFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDP 146 (172)
T ss_dssp ---TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-H
T ss_pred ccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 55667788999999999999988888887 333 4677888888899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 237 EALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 237 ~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
+++..+++..++|++.+.+.+++++.
T Consensus 147 ~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 147 DAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 99999999999999999999998763
|
7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F. |
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.6e-10 Score=108.03 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=84.1
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------------------CceEEEEeecCc--cccchhhhcccc---
Q 016800 154 PPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA--- 207 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sr~~--- 207 (382)
+...+++|||++.|++..|..|++.|++.. -.+++|++++.. ..+.+.+.+|+.
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~ 304 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYG 304 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCe
Confidence 355799999999999999999999996432 245678888764 446788888875
Q ss_pred -eEEecC---CCHHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHhc---CCC-------HHHHHHHHHHHHHhc----
Q 016800 208 -KFRFKP---LSEEVMSSRVLHICNEE-----GLNLDAEALSTLSSIS---QGD-------LRRAITYLQGAARLF---- 264 (382)
Q Consensus 208 -~i~~~~---~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~~s---~gd-------lr~a~~~l~~~~~~~---- 264 (382)
.+.|+. -+.+....++..+++.. -..++++++..|++.+ .|+ .|.+.+++..+...+
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 355553 33566666766555432 2368999998888754 222 666666666654433
Q ss_pred CCCCChhhHhhhh
Q 016800 265 GSSITSKDLISVS 277 (382)
Q Consensus 265 ~~~It~~~v~~~~ 277 (382)
...++.++|.++.
T Consensus 385 ~~~i~~~~v~~a~ 397 (637)
T PRK13765 385 AELTTAEHVLEAK 397 (637)
T ss_pred cceecHHHHHHHH
Confidence 3457778877665
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.6e-10 Score=105.47 Aligned_cols=190 Identities=14% Similarity=0.141 Sum_probs=124.2
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
.++++|+||+|+|||.+++++++++..+......++.....+....+.+...+.......... .+.||++
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~----------~PSiIvL 500 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY----------APSIIVL 500 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhh----------CCcEEEE
Confidence 345999999999999999999999975544333333333334444566666666655444333 5579999
Q ss_pred eCCCCCCHH-------------HHHH-HHHHHHh---cCCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHH
Q 016800 162 DEADSMTED-------------AQNA-LRRTMET---YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSS 221 (382)
Q Consensus 162 De~d~l~~~-------------~~~~-Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~ 221 (382)
|++|.+-.. ..+. |.+.+.. ......||.+++....+.+.+.| +++ ++.+++|...+...
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 999988320 1122 2233333 23445677777877778877776 344 78999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHhc--------CCCCChhhHhhhhCCCC
Q 016800 222 RVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGAARLF--------GSSITSKDLISVSGVIP 281 (382)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~l~~~s~gd-lr~a~~~l~~~~~~~--------~~~It~~~v~~~~~~~~ 281 (382)
+|...+++.......+.++.++..++|- .+++....+.+...+ .+.+|.+++.+.+....
T Consensus 581 IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 581 ILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 9999998876666778888888888774 344444444443322 12456666665554333
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-10 Score=107.60 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=97.2
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-chHHHHHHH--
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GINVVRTKI-- 134 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-- 134 (382)
..|+++.|++.+++.+...+..+ .+++|.||||+|||++++.+...+.. ......++....... +....+..+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~--~~~~~~le~~~i~s~~g~~~~~~~~~~ 264 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPP--LTNEEAIETARIWSLVGKLIDRKQIKQ 264 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCC--CCCcEEEeccccccchhhhcccccccc
Confidence 47899999999988888766544 36999999999999999999876521 111112221111000 000000000
Q ss_pred HHHH-------H-hhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEEEe
Q 016800 135 KTFA-------A-VAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFI 191 (382)
Q Consensus 135 ~~~~-------~-~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~ 191 (382)
..|. . ...+++ ...+.+......+++|||++.+++..++.|+..||+.. ..+.+|.+
T Consensus 265 ~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 265 RPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 0000 0 000111 11222333456799999999999999999999998642 45677887
Q ss_pred ecCc-----------------------cccchhhhcccc-eEEecCCCHHH
Q 016800 192 CNYI-----------------------SRIIEPLASRCA-KFRFKPLSEEV 218 (382)
Q Consensus 192 ~~~~-----------------------~~l~~~l~sr~~-~i~~~~~~~~~ 218 (382)
+|+- .++..+|.+|+. .+.+++++.++
T Consensus 345 ~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 345 MNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 7642 147889999998 67888776544
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=105.65 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=95.2
Q ss_pred CcccCcHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch-
Q 016800 61 KDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI- 127 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~------------~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~- 127 (382)
..+.|++.++..+.-.+-.|.. .|+||+|+||+|||++++.+++..... .+......+..+.
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l~ 277 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGLT 277 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCcc
Confidence 4678999988877766655421 279999999999999999999875211 1111000110010
Q ss_pred -HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEEEeec
Q 016800 128 -NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (382)
Q Consensus 128 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~ 193 (382)
...++.. . ... ....+....+...+++|||++.+++..+..|+..||+.. ..+.+|.++|
T Consensus 278 ~~~~~~~~---~-g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~N 351 (509)
T smart00350 278 AAVTRDPE---T-REF--TLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAAN 351 (509)
T ss_pred ccceEccC---c-ceE--EecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeC
Confidence 0001100 0 000 000111222356799999999999999999999998642 4567788887
Q ss_pred Ccc-------------ccchhhhcccce--EEecCCCHHHHHHHHHHH
Q 016800 194 YIS-------------RIIEPLASRCAK--FRFKPLSEEVMSSRVLHI 226 (382)
Q Consensus 194 ~~~-------------~l~~~l~sr~~~--i~~~~~~~~~~~~~l~~~ 226 (382)
+.. .+.+++.||+.. +-.++++.+.-..++.++
T Consensus 352 P~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i 399 (509)
T smart00350 352 PIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHV 399 (509)
T ss_pred CCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHH
Confidence 642 488999999963 444566665555555544
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-09 Score=102.59 Aligned_cols=208 Identities=16% Similarity=0.195 Sum_probs=137.3
Q ss_pred CcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC---
Q 016800 61 KDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD--- 124 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~--- 124 (382)
.++.|-......+...+.- + +.| .+|+|||||+|||.++++++++. ...++.++++..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~------~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY------GAFLFLINGPELISK 257 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh------CceeEecccHHHHHh
Confidence 5666666666666555531 1 222 39999999999999999999987 344556666531
Q ss_pred ---cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH----------HHHHHHHHHHHhcC--CceEEE
Q 016800 125 ---RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----------DAQNALRRTMETYS--KVTRFF 189 (382)
Q Consensus 125 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~Ll~~le~~~--~~~~~I 189 (382)
.....++..+....... .+.+++|||+|.+.+ .....|+.+++.-. .+++++
T Consensus 258 ~~gEte~~LR~~f~~a~k~~-------------~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl 324 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQ-------------VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVL 324 (693)
T ss_pred cccchHHHHHHHHHHHhccC-------------CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEE
Confidence 11223333333322111 256999999999863 23567888888655 677777
Q ss_pred EeecCccccchhhhc-ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH-HHHHHHHHhcCC
Q 016800 190 FICNYISRIIEPLAS-RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI-TYLQGAARLFGS 266 (382)
Q Consensus 190 l~~~~~~~l~~~l~s-r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~-~~l~~~~~~~~~ 266 (382)
.++|.++.+.+.+++ |+. .+.+.-|+..+..++++..++..+.. ++..+..++..+.|-...=+ .++..++..+..
T Consensus 325 ~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 325 AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATR 403 (693)
T ss_pred EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhh
Confidence 788999999999997 776 78999999999999999988877754 56778888888877664333 233323222211
Q ss_pred CCChhhHhhhhCCCCHHHHHHHH
Q 016800 267 SITSKDLISVSGVIPPEVVEGLF 289 (382)
Q Consensus 267 ~It~~~v~~~~~~~~~~~~~~~~ 289 (382)
. +++++..+...+.+..+.+.+
T Consensus 404 ~-~~~~~~~A~~~i~psa~Re~~ 425 (693)
T KOG0730|consen 404 R-TLEIFQEALMGIRPSALREIL 425 (693)
T ss_pred h-hHHHHHHHHhcCCchhhhhee
Confidence 1 555666666655555544443
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.2e-09 Score=99.52 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=129.6
Q ss_pred cccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
.++|....+..+...+.. ...++++++|++|+||+++|+.+.+.... ....++.+++... ....+...+-....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r---~~~~f~~i~c~~~-~~~~~~~~lfg~~~ 210 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR---ASKPFIAINCGAL-PEQLLESELFGHAR 210 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC---CCCCeEEEeCCCC-CHHHHHHHhcCCCc
Confidence 466665544444333322 22234999999999999999999886421 2356888888764 22222221111000
Q ss_pred hhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------ccc
Q 016800 140 VAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (382)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~ 199 (382)
....+. ...+.+......+++|||++.|+...|..|++.+++.. ..+++|++++..- .+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 211 GAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred CCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 000000 01112223355699999999999999999999998643 1457888776421 122
Q ss_pred hhhhcccc--eEEecCCCH--HHHHHHHHHH----HHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-CC
Q 016800 200 EPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (382)
Q Consensus 200 ~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~~ 266 (382)
+.+..|.. .+.++|+.. +++..++... +...+. .+++++++.|..+. .||+|.+.+.++.++..+ +.
T Consensus 291 ~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~ 370 (444)
T PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSP 370 (444)
T ss_pred HHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 33444444 556666654 4554444333 333332 48999999999988 999999999999987655 55
Q ss_pred CCChhhHhhh
Q 016800 267 SITSKDLISV 276 (382)
Q Consensus 267 ~It~~~v~~~ 276 (382)
.|+.+++...
T Consensus 371 ~i~~~~l~~~ 380 (444)
T PRK15115 371 VISDALVEQA 380 (444)
T ss_pred ccChhhhhhh
Confidence 7887776543
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=105.90 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=97.4
Q ss_pred CCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceEEeecCCC------------cc
Q 016800 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDD------------RG 126 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~~~------------~~ 126 (382)
++++++.+...+.+...+..++ +++|+||||||||++|+.++..+.+... .....+.+..... .+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 5678888888888888887654 7999999999999999999998854321 1112222222110 00
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHh----------------------cC
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMET----------------------YS 183 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~----------------------~~ 183 (382)
.......+..+...+... ..++.++||||+++.+.+. ...++.+||. .|
T Consensus 252 y~~~~G~f~~~~~~A~~~--------p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKEQ--------PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred eEecCchHHHHHHHHHhc--------ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 000000111111111111 0145799999999998654 5666666662 13
Q ss_pred CceEEEEeecCcc----ccchhhhcccceEEecC-CCHHHHHHHH
Q 016800 184 KVTRFFFICNYIS----RIIEPLASRCAKFRFKP-LSEEVMSSRV 223 (382)
Q Consensus 184 ~~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~-~~~~~~~~~l 223 (382)
.++.||.+.|..+ .+..++++|+..+++.| ++...+..++
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHH
Confidence 5667788877766 47899999999999887 4556667766
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=104.08 Aligned_cols=210 Identities=20% Similarity=0.234 Sum_probs=136.3
Q ss_pred CcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
..++|.......+.+.+.. +....+++.|++||||+++|+++...... ....++.+|+... ..+.+...+-...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~---~~~~~~~~~c~~~-~~~~~~~~lfg~~ 209 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR---ANGPFIALNMAAI-PKDLIESELFGHE 209 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC---CCCCeEEEeCCCC-CHHHHHHHhcCCC
Confidence 4577776666555544433 22224899999999999999999886421 2356788888764 2222222220000
Q ss_pred HhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------cc
Q 016800 139 AVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RI 198 (382)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l 198 (382)
.....+. ...+.+.......++|||++.++.+.|..|++++++.. ..+++|++++... .+
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 0000000 01111222345689999999999999999999998642 2457888876432 23
Q ss_pred chhhhcccc--eEEecCCC--HHHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-C
Q 016800 199 IEPLASRCA--KFRFKPLS--EEVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-G 265 (382)
Q Consensus 199 ~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~----~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~ 265 (382)
.+.+..|.. .+.++|+. .+++..++...+ ...+ ..++++++..|..+. .||+|.+.+.++.++..+ +
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 456666665 77888887 567776665543 3333 358999999998876 899999999999988765 4
Q ss_pred CCCChhhHh
Q 016800 266 SSITSKDLI 274 (382)
Q Consensus 266 ~~It~~~v~ 274 (382)
..|+.+++.
T Consensus 370 ~~i~~~~l~ 378 (463)
T TIGR01818 370 DEVLVSDLP 378 (463)
T ss_pred CcccHHhch
Confidence 568877764
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-11 Score=97.62 Aligned_cols=114 Identities=25% Similarity=0.287 Sum_probs=72.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCC--CCCcEEEEE
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIIL 161 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vlii 161 (382)
+++|+||||+|||++++.+++.+ ...+..++.........+.. .+...........+.+. ..+..+++|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g---~~~~~~~~~~~~~~~l~~a~~~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIG---SYDPSNGQFEFKDGPLVRAMRKGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHC---EEET-TTTTCEEE-CCCTTHHEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEecccccccccee---eeeecccccccccccccccccceeEEEE
Confidence 48999999999999999999998 35566666655433332211 10000000000011111 115679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcC-------------C------ceEEEEeecCcc----ccchhhhccc
Q 016800 162 DEADSMTEDAQNALRRTMETYS-------------K------VTRFFFICNYIS----RIIEPLASRC 206 (382)
Q Consensus 162 De~d~l~~~~~~~Ll~~le~~~-------------~------~~~~Il~~~~~~----~l~~~l~sr~ 206 (382)
||++..+++.++.|+.++++.. . +.++|+++|+.. .+.+++++||
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 9999999999999999998431 1 278888888877 7889999986
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-11 Score=97.73 Aligned_cols=103 Identities=26% Similarity=0.401 Sum_probs=68.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
+++|.||+|+|||.+|+++++.+. +. ...++.+|++....-+.....+..+........ . .....||++|
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~---~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v----~--~~~~gVVllD 75 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGS---ERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYV----G--AEEGGVVLLD 75 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SS---CCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHH----H--HHHHTEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCC---ccchHHHhhhcccccchHHhhhhhhhhccccee----e--ccchhhhhhH
Confidence 589999999999999999999996 33 246777887654442221122222111110000 0 0022399999
Q ss_pred CCCCCCH-----------HHHHHHHHHHHhcC-----------CceEEEEeecCc
Q 016800 163 EADSMTE-----------DAQNALRRTMETYS-----------KVTRFFFICNYI 195 (382)
Q Consensus 163 e~d~l~~-----------~~~~~Ll~~le~~~-----------~~~~~Il~~~~~ 195 (382)
|+|+..+ ..++.|++++|+.. .++.||+++|-.
T Consensus 76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9999999 99999999999542 467788888754
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-09 Score=102.87 Aligned_cols=211 Identities=21% Similarity=0.215 Sum_probs=131.1
Q ss_pred CCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHH
Q 016800 60 VKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (382)
+..++|....+..+.+.+.... ..+++++|++|+||+++|+++...... ....++.+++.... ...+...+-..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~-~~~~~~~lfg~ 217 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALP-ESLLESELFGH 217 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCC-HHHHHHHhcCC
Confidence 3457777665555554443322 224999999999999999999875421 23567888887642 22222211000
Q ss_pred HHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------c
Q 016800 138 AAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (382)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~ 197 (382)
......+. ...+.+......+++|||++.++...|..|+..+++.. .++++|++++... .
T Consensus 218 ~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~ 297 (457)
T PRK11361 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT 297 (457)
T ss_pred CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCC
Confidence 00000000 01122333355799999999999999999999998642 2467888886431 2
Q ss_pred cchhhhcccc--eEEecCCCH--HHHHHHH----HHHHHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-
Q 016800 198 IIEPLASRCA--KFRFKPLSE--EVMSSRV----LHICNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (382)
Q Consensus 198 l~~~l~sr~~--~i~~~~~~~--~~~~~~l----~~~~~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~- 264 (382)
+.+.+..|+. .+.++|+.. +++..++ .+.....+ ..+++++++.+..+. .||+|.+.+.++.+...+
T Consensus 298 ~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 298 FREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred chHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 3344555544 566666653 4454433 33333323 358999999988876 899999999999887655
Q ss_pred CCCCChhhHh
Q 016800 265 GSSITSKDLI 274 (382)
Q Consensus 265 ~~~It~~~v~ 274 (382)
+..|+.+++.
T Consensus 378 ~~~i~~~~l~ 387 (457)
T PRK11361 378 GPIIFSEDLP 387 (457)
T ss_pred CCcccHHHCh
Confidence 4567777664
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=96.98 Aligned_cols=95 Identities=9% Similarity=-0.047 Sum_probs=65.1
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------cccchhhhcccceEEe
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIEPLASRCAKFRF 211 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l~~~l~sr~~~i~~ 211 (382)
.+..+.+.++-++|+.+.+.+.++.|+..+++.. ....||.++|.. .+..+++++||..+.+
T Consensus 231 ~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~v 310 (361)
T smart00763 231 ALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKV 310 (361)
T ss_pred ccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeC
Confidence 3445677899999999999999999999998542 123466667655 3568999999998888
Q ss_pred cCCCH-HHHHHHHHHHHHHh---CCCCCHHHHHHHHH
Q 016800 212 KPLSE-EVMSSRVLHICNEE---GLNLDAEALSTLSS 244 (382)
Q Consensus 212 ~~~~~-~~~~~~l~~~~~~~---~~~~~~~~~~~l~~ 244 (382)
+.+.. .+-.++.++.+... +..+.+.+++.++.
T Consensus 311 pY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 311 PYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred CCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 76654 44455555555432 34455555554443
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-09 Score=102.84 Aligned_cols=200 Identities=18% Similarity=0.133 Sum_probs=118.7
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcC-CCCCCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGG 150 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 150 (382)
.|.-..-+....|+||.|++|+|||++++++++.+... ..++.+..... .+.+-..+.-......+. ....+.
T Consensus 6 Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t--~d~L~G~idl~~~~~~g~~~~~~G~ 79 (589)
T TIGR02031 6 ALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVT--EDRLIGGIDVEESLAGGQRVTQPGL 79 (589)
T ss_pred HHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccc--hhhcccchhhhhhhhcCcccCCCCC
Confidence 33333344557789999999999999999999976321 13444443110 011000000000000000 001122
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEEEeecCcc---ccchhhhcccce-EEecC
Q 016800 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAK-FRFKP 213 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sr~~~-i~~~~ 213 (382)
+......+++|||++.+++..++.|+..|++.. ..+.+|.++|... .+.+.+..|+.. +.+..
T Consensus 80 L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~ 159 (589)
T TIGR02031 80 LDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLED 159 (589)
T ss_pred eeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCC
Confidence 222355699999999999999999999998653 3456676666654 688899999873 44443
Q ss_pred C-CHHHHHHHHHHHH---------------------H--HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHhc-
Q 016800 214 L-SEEVMSSRVLHIC---------------------N--EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF- 264 (382)
Q Consensus 214 ~-~~~~~~~~l~~~~---------------------~--~~~~~~~~~~~~~l~~~s---~-gdlr~a~~~l~~~~~~~- 264 (382)
+ +.++..+++.... + ...+.++++.++.|+..+ + ..+|..+..+..+...+
T Consensus 160 ~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aa 239 (589)
T TIGR02031 160 VASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAA 239 (589)
T ss_pred CCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH
Confidence 3 4444344443321 1 124678888888887654 2 23677776665443333
Q ss_pred ---CCCCChhhHhhhh
Q 016800 265 ---GSSITSKDLISVS 277 (382)
Q Consensus 265 ---~~~It~~~v~~~~ 277 (382)
...++.+||+.++
T Consensus 240 l~gr~~V~~~Dv~~a~ 255 (589)
T TIGR02031 240 LHGRTEVTEEDLKLAV 255 (589)
T ss_pred HhCCCCCCHHHHHHHH
Confidence 4679999998877
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-10 Score=96.64 Aligned_cols=96 Identities=27% Similarity=0.337 Sum_probs=59.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-------chHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-------GINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (382)
...+++|+||+|+|||++|.++++++...+ ..+..++..+.. ........+..+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--------------- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITASDLLDELKQSRSDGSYEELLKRLK--------------- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---------------
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeecCceeccccccccccchhhhcCccc---------------
Confidence 334699999999999999999999885432 334444432110 0001112222222
Q ss_pred CCcEEEEEeCCCCC--CHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
+..++||||+... +....+.|+.+++....+...|++||..
T Consensus 108 -~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 108 -RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp -TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred -cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 4569999999876 4556778889998766555688888854
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-09 Score=106.04 Aligned_cols=192 Identities=20% Similarity=0.157 Sum_probs=126.8
Q ss_pred CCCcccCcHHHHHHHHHHHHcC------------CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-
Q 016800 59 QVKDVAHQEEVVRVLTNTLETA------------NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~------------~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (382)
.|+++-|.+.++..|...+-.. ..|. +||+||||||||..|++++...-.. .....+..-.+++-
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~-~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRG-NRKISFFMRKGADCL 341 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccc-ccccchhhhcCchhh
Confidence 6788888888888777765321 2334 9999999999999999999986321 11112221222221
Q ss_pred -cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhcC--CceEEEE
Q 016800 125 -RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRFFF 190 (382)
Q Consensus 125 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~~--~~~~~Il 190 (382)
..+......+..++..+... .+-|+++||+|.+.+ ....-|+.+|+.-+ +.+++|-
T Consensus 342 skwvgEaERqlrllFeeA~k~----------qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvig 411 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKT----------QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIG 411 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhcc----------CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEc
Confidence 11122222233333222211 556999999998742 12345777777543 4566777
Q ss_pred eecCccccchhhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 191 ICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 191 ~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
+||.++.+.+++++... .+.|+-++.+...+++.-.-.++.-.++......+++.+.|-.+.-+..|...+
T Consensus 412 ATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 412 ATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEA 485 (1080)
T ss_pred ccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHH
Confidence 78999999999988554 789999998888888876666666778889999999988777776655544433
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-10 Score=92.96 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=76.7
Q ss_pred ccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 63 VAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
++|....++.+.+.++.- ...+++|+|++||||+.+|+++.+... ....+++.+||... ..+.+...+ +..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~---r~~~pfi~vnc~~~-~~~~~e~~L---FG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP---RKNGPFISVNCAAL-PEELLESEL---FGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST---TTTS-EEEEETTTS--HHHHHHHH---HEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh---cccCCeEEEehhhh-hcchhhhhh---hcc
Confidence 467767776666665442 223499999999999999999988532 12467899999865 223222211 111
Q ss_pred hhc---CCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecCc
Q 016800 141 AVG---SGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI 195 (382)
Q Consensus 141 ~~~---~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~ 195 (382)
... ... ..+.+......+++|||++.|++..|..|+++|++. +.++++|++|+..
T Consensus 74 ~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 100 000 011112236679999999999999999999999964 2367788888753
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=95.34 Aligned_cols=131 Identities=18% Similarity=0.259 Sum_probs=77.1
Q ss_pred hhcCCCCCCccc----CcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 53 EKYRPKQVKDVA----HQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 53 ~k~~p~~~~~~~----g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
+.+...+|+.+. |+..++.....++.. ....+++|+||||||||+++.++++.+...+ ..+..++..+.
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l-- 140 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDV-- 140 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHH--
Confidence 445556787775 334445444444332 1234699999999999999999999986432 23344433321
Q ss_pred hHHHHHHHHHH-HHhhhcCCCCCCCCCCCCcEEEEEeCC--CCCCHHHHHHHHHHHHhcCC-ceEEEEeecCc
Q 016800 127 INVVRTKIKTF-AAVAVGSGQRRGGYPCPPYKIIILDEA--DSMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (382)
Q Consensus 127 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vliiDe~--d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~ 195 (382)
...++.....- ..... ...+ ....+|||||+ +..+...++.|+.+++.... ....|++||..
T Consensus 141 ~~~l~~~~~~~~~~~~~-----l~~l--~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 141 MSRLHESYDNGQSGEKF-----LQEL--CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHHHhccchHHHH-----HHHh--cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11121111000 00000 0000 15579999999 45577788999999998765 35578888854
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-09 Score=92.88 Aligned_cols=173 Identities=23% Similarity=0.299 Sum_probs=105.2
Q ss_pred cccCcHHHHHHHHHHH--------Hc---C----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-
Q 016800 62 DVAHQEEVVRVLTNTL--------ET---A----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR- 125 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l--------~~---~----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~- 125 (382)
-++||+..++.|.-++ .. . ..+|+|+.||+|+|||.+|+.+|+.+. .+|.--++....
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~Ln------VPFaiADATtLTE 135 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILN------VPFAIADATTLTE 135 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhC------CCeeeccccchhh
Confidence 4668988886552211 11 1 234699999999999999999999984 333322332110
Q ss_pred ---chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHHHHHHhc-----C
Q 016800 126 ---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY-----S 183 (382)
Q Consensus 126 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------------~~~~~~Ll~~le~~-----~ 183 (382)
--+++.+.+..+.+..-.. ...+.+.+|+|||+|++. ...|++|++++|.. |
T Consensus 136 AGYVGEDVENillkLlqaadyd------V~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPP 209 (408)
T COG1219 136 AGYVGEDVENILLKLLQAADYD------VERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPP 209 (408)
T ss_pred ccccchhHHHHHHHHHHHcccC------HHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCC
Confidence 1134444444444332111 112266799999999984 34699999999831 1
Q ss_pred --------------CceEEEEee------------------------cCc----------------------cccchhhh
Q 016800 184 --------------KVTRFFFIC------------------------NYI----------------------SRIIEPLA 203 (382)
Q Consensus 184 --------------~~~~~Il~~------------------------~~~----------------------~~l~~~l~ 203 (382)
+.+.++|+| +.. +.+.|.+.
T Consensus 210 qGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfI 289 (408)
T COG1219 210 QGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFI 289 (408)
T ss_pred CCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHh
Confidence 112233333 000 01456777
Q ss_pred cccc-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc
Q 016800 204 SRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 204 sr~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s 246 (382)
-|.. +..+.+++.+.+.++|.. .+.-+++ .++++++..+++.+
T Consensus 290 GRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 290 GRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred cccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHH
Confidence 7777 568899999999888764 1222344 47889998888755
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-08 Score=84.23 Aligned_cols=217 Identities=19% Similarity=0.197 Sum_probs=136.2
Q ss_pred hhccccccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 39 ~~~~~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
+.++.....+.|+....+|.-+-..--+.+.+..+...+..++. .+.++|+-|+|||.+.+++...+..... .++.
T Consensus 9 ~~l~~~g~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~qg-~~~vtGevGsGKTv~~Ral~~s~~~d~~---~~v~ 84 (269)
T COG3267 9 MLLNHFGFSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQG-ILAVTGEVGSGKTVLRRALLASLNEDQV---AVVV 84 (269)
T ss_pred HHHHHhhhccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCCc-eEEEEecCCCchhHHHHHHHHhcCCCce---EEEE
Confidence 34444556677777766665444444567788888888877763 4899999999999999977777643321 2233
Q ss_pred eecCCCcchHHHHHHHHHHHHhhhcCCCC----------CCCCCCCCc-EEEEEeCCCCCCHHHHHHHHHHHH---hcCC
Q 016800 119 LNASDDRGINVVRTKIKTFAAVAVGSGQR----------RGGYPCPPY-KIIILDEADSMTEDAQNALRRTME---TYSK 184 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~-~vliiDe~d~l~~~~~~~Ll~~le---~~~~ 184 (382)
++.............+..+.. .+..... ......+++ .++++||++.++.+....|+.+.+ +...
T Consensus 85 i~~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~ 163 (269)
T COG3267 85 IDKPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSK 163 (269)
T ss_pred ecCcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccC
Confidence 433321111111111111110 0000000 000001134 799999999999988887776654 4445
Q ss_pred ceEEEEeecCc------cccchhhhcccce-EEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHH
Q 016800 185 VTRFFFICNYI------SRIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 185 ~~~~Il~~~~~------~~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~s~gdlr~a~ 254 (382)
...+++++.+. ......+..|+.. +..+|++.++...+|+.+++..+.. ++++++..+...+.|-|+ ++
T Consensus 164 ~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~-li 242 (269)
T COG3267 164 LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPR-LI 242 (269)
T ss_pred ceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchH-HH
Confidence 55677776432 1134566778887 9999999999999999998876543 688999999999999665 45
Q ss_pred HHHHHHH
Q 016800 255 TYLQGAA 261 (382)
Q Consensus 255 ~~l~~~~ 261 (382)
|.+...+
T Consensus 243 n~~~~~A 249 (269)
T COG3267 243 NNLATLA 249 (269)
T ss_pred HHHHHHH
Confidence 5554444
|
|
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=93.10 Aligned_cols=172 Identities=23% Similarity=0.258 Sum_probs=104.7
Q ss_pred CCCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
..+|+++-|.-.+...|+.-+.- + .+|. ++||||||+|||.+++++++.+ +.+++...++.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m------g~nfl~v~ss~ 201 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM------GVNFLKVVSSA 201 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc------CCceEEeeHhh
Confidence 34788888888888888776632 1 2333 8999999999999999999997 34455444432
Q ss_pred C------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc----
Q 016800 124 D------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY---- 182 (382)
Q Consensus 124 ~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~---- 182 (382)
. .+..-+++........ -..++++||+|... ...+.-|..+++.-
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~--------------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd 267 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREV--------------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD 267 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhh--------------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch
Confidence 1 1122344433332221 34799999999762 23455566665532
Q ss_pred -CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhcCC
Q 016800 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSISQG 248 (382)
Q Consensus 183 -~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s~g 248 (382)
-..+.+|+++|.++.+.++|.+ |.. .++.+.|...--..+++-....- .-.++.+++-.+.+..+|
T Consensus 268 ~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 268 TLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred hcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 2567899999999999999987 444 45555444333333322111110 012556666666665554
|
|
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-09 Score=89.87 Aligned_cols=127 Identities=24% Similarity=0.307 Sum_probs=85.9
Q ss_pred cccCcHHHHHHHHHHH----HcCC--CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE----EeecCCCcchHHH
Q 016800 62 DVAHQEEVVRVLTNTL----ETAN--CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL----ELNASDDRGINVV 130 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l----~~~~--~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 130 (382)
.+.||.-+++.+.+.+ .+.. .|- +-|+|++||||+.+++.+++.++..+..+..+. ..+.+....++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 3457655554444444 4443 233 679999999999999999999876554433332 2334444556666
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------CceEEEEeecCccc
Q 016800 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------KVTRFFFICNYISR 197 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------~~~~~Il~~~~~~~ 197 (382)
+..++.........- .+.++|+||+|+|++...+.|...++.++ ..+.||+.+|....
T Consensus 163 k~eL~~~v~~~v~~C---------~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~ 227 (344)
T KOG2170|consen 163 KEELKNRVRGTVQAC---------QRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGS 227 (344)
T ss_pred HHHHHHHHHHHHHhc---------CCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcch
Confidence 666665444333322 66799999999999999999999998543 46789999876543
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=83.93 Aligned_cols=119 Identities=26% Similarity=0.371 Sum_probs=79.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH-HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR-TKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
.++++||.|+||||+++.+++.+. ....++.++..+........ +....+... .. .+..+|+||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~i~iD 68 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLLEYFLEL-IK----------PGKKYIFID 68 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhHHHHHHh-hc----------cCCcEEEEe
Confidence 489999999999999999999874 12456677766543221110 011111111 10 045799999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccc----cchhhhcccceEEecCCCHHHH
Q 016800 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISR----IIEPLASRCAKFRFKPLSEEVM 219 (382)
Q Consensus 163 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~----l~~~l~sr~~~i~~~~~~~~~~ 219 (382)
|++.++ +....+..+.+.. .+..||+++..... ....+..|...+++.|++-.|.
T Consensus 69 Eiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 69 EIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 999996 5666666777765 55678887765433 3466777888999999998774
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7e-09 Score=93.96 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=100.6
Q ss_pred cHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH-HHHHHHHHHHhhh
Q 016800 66 QEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV-VRTKIKTFAAVAV 142 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 142 (382)
++..++.+.+.+... ....+.|+|++|+|||++|..+++.......++ .++.++......... ....+..+.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFD-GVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCT-EEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccc-ccccccccccccccccccccccccccccc
Confidence 356678888888773 333389999999999999999997732122121 223333332222222 2222222211100
Q ss_pred cC--CCCC-------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecC
Q 016800 143 GS--GQRR-------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213 (382)
Q Consensus 143 ~~--~~~~-------~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~ 213 (382)
.. .... ...-.+++-++|+|+++... ..+.+...+.....++.+|+||... .+..........+++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~-~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDR-SVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCG-GGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhhccccceeeeeeecccc--ccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 00 0000 00001257899999987654 4444555554445567888888654 33333333366899999
Q ss_pred CCHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCHHHHHHH
Q 016800 214 LSEEVMSSRVLHICNEEG---LNLDAEALSTLSSISQGDLRRAITY 256 (382)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~s~gdlr~a~~~ 256 (382)
++.++..+++.+.+.... ..-.++.+..|++.++|.|-.+...
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999988875444 1123456789999999977654333
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=95.32 Aligned_cols=148 Identities=20% Similarity=0.250 Sum_probs=88.5
Q ss_pred hhhcCCCCCCcccCc---HHHHHHHHHHHHc----CCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 52 VEKYRPKQVKDVAHQ---EEVVRVLTNTLET----ANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 52 ~~k~~p~~~~~~~g~---~~~~~~l~~~l~~----~~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.++|+-.+|+.+... ..+.....+++.. ... ..++|+|++|+|||+++.++++.+...+ ..++.++..+
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ 152 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQ 152 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHH
Confidence 356666778777533 3333444433332 211 2399999999999999999999985432 3445555432
Q ss_pred CcchHHHHHHHH--------HHHHhhhcCCCCCCCCCCCCcEEEEEeCC--CCCCHHHHHHHHHHHHhcC-CceEEEEee
Q 016800 124 DRGINVVRTKIK--------TFAAVAVGSGQRRGGYPCPPYKIIILDEA--DSMTEDAQNALRRTMETYS-KVTRFFFIC 192 (382)
Q Consensus 124 ~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~vliiDe~--d~l~~~~~~~Ll~~le~~~-~~~~~Il~~ 192 (382)
. ...+..... .+... + ....+|||||+ +..+...+..|+.+++... ....+|++|
T Consensus 153 l--l~~i~~~~~~~~~~~~~~~~~~----------l--~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTs 218 (268)
T PRK08116 153 L--LNRIKSTYKSSGKEDENEIIRS----------L--VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTT 218 (268)
T ss_pred H--HHHHHHHHhccccccHHHHHHH----------h--cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
Confidence 1 111111110 00000 0 14469999999 5567778888999998753 335588888
Q ss_pred cCccc-----cchhhhcc----cceEEecCCCH
Q 016800 193 NYISR-----IIEPLASR----CAKFRFKPLSE 216 (382)
Q Consensus 193 ~~~~~-----l~~~l~sr----~~~i~~~~~~~ 216 (382)
|.... +...+.|| |..+.|..++.
T Consensus 219 N~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 219 NLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 76422 34567777 55777776653
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-10 Score=86.90 Aligned_cols=111 Identities=26% Similarity=0.269 Sum_probs=57.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC---CCCCCCCCCcEEEE
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKIII 160 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~vli 160 (382)
|+||+|+||+|||++++++++.+. ..+..+......-..++. .+......... ..+.. -..|++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------~~f~RIq~tpdllPsDi~----G~~v~~~~~~~f~~~~GPi---f~~ill 67 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------LSFKRIQFTPDLLPSDIL----GFPVYDQETGEFEFRPGPI---FTNILL 67 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHH----EEEEEETTTTEEEEEE-TT----SSEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------CceeEEEecCCCCcccce----eeeeeccCCCeeEeecChh---hhceee
Confidence 789999999999999999999973 344444432211111111 00000000000 01111 224999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-----ccchhhhcccc
Q 016800 161 LDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-----RIIEPLASRCA 207 (382)
Q Consensus 161 iDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-----~l~~~l~sr~~ 207 (382)
+||+.+.++..|.+|++.|++.. ....+|.+.|+.+ .+..++.+|+.
T Consensus 68 ~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 68 ADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp EETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 99999999999999999999763 2233444556543 46777777764
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-08 Score=100.37 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=88.1
Q ss_pred CcccCcHHHHHHHHHHHHcCC---------------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceEE
Q 016800 61 KDVAHQEEVVRVLTNTLETAN---------------------CPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLE 118 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------------------~~~lll~Gp~G~GKt~la~~la~~l~~~~~-~~~~~~~ 118 (382)
..+.|++.+++.+.-.+-.|. -.|+||.|+|||||+.+|+.+++......+ ....+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 367899999987765553331 016999999999999999999885321100 0001111
Q ss_pred eecCCCcchHHHHHHHHHHHHhhhcCC-CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------C
Q 016800 119 LNASDDRGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------K 184 (382)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~ 184 (382)
++.... . .. .. ...+.. ...+....+...+++|||++.|+...+.+|++.||+.. .
T Consensus 530 vgLTa~-----~-~~-~d---~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~a 599 (915)
T PTZ00111 530 VGLTAS-----I-KF-NE---SDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKA 599 (915)
T ss_pred ccccch-----h-hh-cc---cccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCC
Confidence 111110 0 00 00 000000 01111222355799999999999999999999998642 4
Q ss_pred ceEEEEeecCcc-------------ccchhhhcccce--EEecCCCHH
Q 016800 185 VTRFFFICNYIS-------------RIIEPLASRCAK--FRFKPLSEE 217 (382)
Q Consensus 185 ~~~~Il~~~~~~-------------~l~~~l~sr~~~--i~~~~~~~~ 217 (382)
.+++|.++|+.. .+.+++.||+.. +-++.++.+
T Consensus 600 r~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 600 ETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred CeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChH
Confidence 677888887632 267999999973 344444443
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.9e-09 Score=91.95 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=86.4
Q ss_pred hhhcCCCCCCccc----CcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 52 VEKYRPKQVKDVA----HQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 52 ~~k~~p~~~~~~~----g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.+.|++.+|+++. ++..++..+.++++.-. ..+++|+|++|+|||+++.+++.++...+ ..+..++..+.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l- 138 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADI- 138 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHH-
Confidence 4567778898876 23445666666665422 23599999999999999999999985432 34444433221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecCccc-----
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYISR----- 197 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~----- 197 (382)
...++.... ............+ ....+|||||++... .-....|..+++.... ...+|++||....
T Consensus 139 -~~~l~~~~~---~~~~~~~~~l~~l--~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 139 -MSAMKDTFS---NSETSEEQLLNDL--SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred -HHHHHHHHh---hccccHHHHHHHh--ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 111111100 0000000000000 155699999998764 3345678888887543 5567888875422
Q ss_pred cchhhhccc-----ceEEecCC
Q 016800 198 IIEPLASRC-----AKFRFKPL 214 (382)
Q Consensus 198 l~~~l~sr~-----~~i~~~~~ 214 (382)
+.+.+.+|. ..+.|.-.
T Consensus 213 ~g~ri~sRl~~~~~~~i~f~~~ 234 (244)
T PRK07952 213 LGERVMDRMRLGNSLWVIFNWD 234 (244)
T ss_pred hChHHHHHHHHCCceEEEeeCC
Confidence 334444554 25666543
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-08 Score=95.46 Aligned_cols=210 Identities=18% Similarity=0.209 Sum_probs=129.1
Q ss_pred cccCcHHHHHHHHHHHHc-C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET-A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
.++|.......+...+.. . ....++++|++|+||+++++++...... ....++.+++.... ...+...+-....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~---~~~~~i~~~c~~~~-~~~~~~~lfg~~~ 215 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR---SEKPLVTLNCAALN-ESLLESELFGHEK 215 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC---CCCCeeeeeCCCCC-HHHHHHHhcCCCC
Confidence 456665555444433322 2 2223899999999999999999876422 23578888987642 2323222211000
Q ss_pred hhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------ccc
Q 016800 140 VAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (382)
Q Consensus 140 ~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~ 199 (382)
....+. ...+.+......+++|||++.|+...|..|+..+++.. ..+++|++++... .+.
T Consensus 216 ~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~ 295 (441)
T PRK10365 216 GAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFR 295 (441)
T ss_pred CCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCch
Confidence 000000 01112233356789999999999999999999998643 2456777775432 233
Q ss_pred hhhhcccc--eEEecCCCH--HHHHHHHHHH----HHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-CC
Q 016800 200 EPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (382)
Q Consensus 200 ~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~~ 266 (382)
+.+..|+. .+.++|+.. +++..++... +...+ ..++++++..|.... .||+|.+.+.++.++..+ +.
T Consensus 296 ~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~ 375 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGE 375 (441)
T ss_pred HHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44444544 556666653 3554444443 33333 348999999999887 999999999999887655 55
Q ss_pred CCChhhHhh
Q 016800 267 SITSKDLIS 275 (382)
Q Consensus 267 ~It~~~v~~ 275 (382)
.|+.+++..
T Consensus 376 ~i~~~~l~~ 384 (441)
T PRK10365 376 YISERELPL 384 (441)
T ss_pred ccchHhCch
Confidence 788777643
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.6e-10 Score=98.78 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=95.6
Q ss_pred ccCCCC-CCCCcccccccccCCCCCchHHHHhhccccccCCchhhhhcCCCCCCccc-CcHHHHHHHHHHHH-cCCCCcE
Q 016800 9 HKSGKN-KSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTLE-TANCPHM 85 (382)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~-g~~~~~~~l~~~l~-~~~~~~l 85 (382)
..++.. +.|.+.+++... ...+..++..+....+...+..|....+.-..|+.-- ++...+..+....+ -.+..++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl 108 (254)
T COG1484 30 LEQAADCKEWGYAEFLEYL-LEEEKLAREARKIERRLRSASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFERGENL 108 (254)
T ss_pred HHhHHHhhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhccCCcE
Confidence 344444 677777776662 2222333333333333346777776333333332111 13334444433331 1244569
Q ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH-HHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 86 LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT-FAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 86 ll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
+|+||||+|||++|.++++++. .. +..+..+..++. +..++..... ........ . -....++||||+
T Consensus 109 ~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~el--~~~Lk~~~~~~~~~~~l~~-----~--l~~~dlLIiDDl 176 (254)
T COG1484 109 VLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPDL--LSKLKAAFDEGRLEEKLLR-----E--LKKVDLLIIDDI 176 (254)
T ss_pred EEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHHH--HHHHHHHHhcCchHHHHHH-----H--hhcCCEEEEecc
Confidence 9999999999999999999996 32 234455544431 2222221111 00000000 0 015679999999
Q ss_pred CCC--CHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 165 DSM--TEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 165 d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
... +....+.++.+|.........++++|.+.
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 985 45567888888887665555588888654
|
|
| >PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction [] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=73.84 Aligned_cols=87 Identities=46% Similarity=0.713 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHH
Q 016800 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ 359 (382)
.++..+.++++.+.++++.+++..+++++..|+++.+++..+.+.+... .++...+.+++..++++++++..|.++.++
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~-~~~~~~k~~i~~~la~~e~rl~~G~~e~lQ 81 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVES-DIPDSQKAEILKILAEIEYRLSDGASEILQ 81 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTS-TSSHHHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhHHHHCCCCHHHH
Confidence 4578889999999999999999999999999999999999999999886 788999999999999999999999999999
Q ss_pred HHHHHHHH
Q 016800 360 LLDVASNV 367 (382)
Q Consensus 360 l~~l~~~l 367 (382)
+++|++++
T Consensus 82 l~alva~~ 89 (89)
T PF08542_consen 82 LEALVAAF 89 (89)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
|
PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A. |
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-07 Score=82.08 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=134.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
..|+.+++....++.+....+.- -.. .+||.|.+||||..+|++....- +. .+.+|+-+||... +.+.....+
T Consensus 201 ~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S--~R-~~~pFlalNCA~l-Pe~~aEsEl- 275 (511)
T COG3283 201 SGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLAS--PR-HSKPFLALNCASL-PEDAAESEL- 275 (511)
T ss_pred cchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcC--cc-cCCCeeEeecCCC-chhHhHHHH-
Confidence 46788888766666555444332 121 39999999999999999876542 22 2467888999864 333333222
Q ss_pred HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------c
Q 016800 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (382)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~ 197 (382)
+....+.....+-++.+....|++||+..|++..|..|++++.+.. -++++|++|..+- +
T Consensus 276 --FG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~ 353 (511)
T COG3283 276 --FGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGK 353 (511)
T ss_pred --hcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCc
Confidence 2222222223333445566799999999999999999999997542 4567777774331 2
Q ss_pred cchhhhcccceE--EecCCCH------HHHHHHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-
Q 016800 198 IIEPLASRCAKF--RFKPLSE------EVMSSRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (382)
Q Consensus 198 l~~~l~sr~~~i--~~~~~~~------~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~- 264 (382)
.-..+--|..++ +++|+.+ .-..-++.+.+.+.|+ .++++.+..+.++- .||+|.+.|.+-.++...
T Consensus 354 fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~E 433 (511)
T COG3283 354 FREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLLE 433 (511)
T ss_pred hHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHhc
Confidence 233444455544 4444432 2234566677777776 46788888887764 899999999887776554
Q ss_pred CCCCChhhHh
Q 016800 265 GSSITSKDLI 274 (382)
Q Consensus 265 ~~~It~~~v~ 274 (382)
+..++.+++.
T Consensus 434 g~~l~i~~i~ 443 (511)
T COG3283 434 GYELRIEDIL 443 (511)
T ss_pred cCccchhhcc
Confidence 5566655543
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-08 Score=92.73 Aligned_cols=154 Identities=25% Similarity=0.274 Sum_probs=93.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC-------------C
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-------------D 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-------------~ 124 (382)
..|.++.|+..+++.+.-.+..+ .+++|.||+|+|||++++.+...+-.. .....++...-. .
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~--~g~e~le~~~i~s~~g~~~~~~~~~~ 263 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDL--SNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCC--CCcEEEecchhhhhhccccccCCcCC
Confidence 37888999998888776444433 369999999999999999998765211 111111111100 0
Q ss_pred cchHHHHHHHHHHHHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceEEE
Q 016800 125 RGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFF 189 (382)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~I 189 (382)
++............. .+++ ...+.+......++++||++.++...++.|++.||+. +..+.+|
T Consensus 264 rPfr~ph~~~s~~~l--~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lI 341 (506)
T PRK09862 264 RPFRSPHHSASLTAM--VGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLV 341 (506)
T ss_pred CCccCCCccchHHHH--hCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEE
Confidence 000000000000000 1111 1122233446679999999999999999999999854 3456677
Q ss_pred EeecCcc---------------------ccchhhhcccc-eEEecCCCHH
Q 016800 190 FICNYIS---------------------RIIEPLASRCA-KFRFKPLSEE 217 (382)
Q Consensus 190 l~~~~~~---------------------~l~~~l~sr~~-~i~~~~~~~~ 217 (382)
.++|+.. ++..++.+|+. .+.+++++.+
T Consensus 342 Aa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 342 AAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 7777532 46678999998 5788877543
|
|
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-08 Score=88.60 Aligned_cols=282 Identities=17% Similarity=0.183 Sum_probs=162.4
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCC-----------C-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-----------C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~-----------~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~ 115 (382)
..++.++..-.--.++.||+++++.|.-++-.|. . -|+++.|.||+.|+.+.+.+.+.. | .
T Consensus 329 ~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rla--p-----R 401 (721)
T KOG0482|consen 329 EGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLA--P-----R 401 (721)
T ss_pred cccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcC--c-----c
Confidence 4455666655444589999999999987774431 1 149999999999999999998864 1 1
Q ss_pred eEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------
Q 016800 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG-YPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------- 183 (382)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------- 183 (382)
-++..+...+++.--...++.-.. +...-.++ ...++..|..|||+|+|.....-++.+.||.-.
T Consensus 402 gvYTTGrGSSGVGLTAAVmkDpvT---gEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~Tt 478 (721)
T KOG0482|consen 402 GVYTTGRGSSGVGLTAAVMKDPVT---GEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTT 478 (721)
T ss_pred cceecCCCCCccccchhhhcCCCC---CeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccc
Confidence 122223222332211111111000 00000011 112356799999999999988899999998532
Q ss_pred --CceEEEEeecCcc-------------ccchhhhcccceE-------------------------------EecCCCHH
Q 016800 184 --KVTRFFFICNYIS-------------RIIEPLASRCAKF-------------------------------RFKPLSEE 217 (382)
Q Consensus 184 --~~~~~Il~~~~~~-------------~l~~~l~sr~~~i-------------------------------~~~~~~~~ 217 (382)
..+.++.++|+.. .++.++.||+..+ .|.|++.+
T Consensus 479 LNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~ 558 (721)
T KOG0482|consen 479 LNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPN 558 (721)
T ss_pred hhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHH
Confidence 2333444444321 2678888887632 67788888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCC
Q 016800 218 VMSSRVLHICNEEGLNLDAEALSTLSSI--------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279 (382)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------------s~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~ 279 (382)
-++.++.. |+.....++++..++|... +.-.+|.++.++......+ +..+..++|.+++..
T Consensus 559 ~mR~yI~~-ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 559 LMRRYISL-AKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRL 637 (721)
T ss_pred HHHHHHHH-HhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 88888753 5555666777777776542 1356888887776443333 456677777776531
Q ss_pred CCHHHHHHHHHH----HhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 016800 280 IPPEVVEGLFAV----CRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCL 343 (382)
Q Consensus 280 ~~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (382)
...... .+... -.....+..+..+++|.. .|..+..+.....+...+ .|++..+...++.-
T Consensus 638 me~sK~-sL~~~~~~~~~~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~k--Gfs~~ql~~~i~ey 703 (721)
T KOG0482|consen 638 MEMSKD-SLYQDDGQKEDTSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRK--GFSEAQLKKCIDEY 703 (721)
T ss_pred HHhhhc-ccccccccccccchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 110000 00000 000124566777788876 444444444444333333 68887766655443
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-08 Score=89.65 Aligned_cols=170 Identities=21% Similarity=0.246 Sum_probs=106.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEE
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 158 (382)
.|+|+.||+|+|||.+|+.+|+.+ +.++.-.++.... --+++...|..+...+... .+.....|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n------VekAQqGI 294 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN------VEKAQQGI 294 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchhhcccccccHHHHHHHHHHHccCC------HHHHhcCe
Confidence 469999999999999999999988 4455555554211 0123333344433322111 11225679
Q ss_pred EEEeCCCCCC--------------HHHHHHHHHHHHhc-------------C------CceEEEEeec------------
Q 016800 159 IILDEADSMT--------------EDAQNALRRTMETY-------------S------KVTRFFFICN------------ 193 (382)
Q Consensus 159 liiDe~d~l~--------------~~~~~~Ll~~le~~-------------~------~~~~~Il~~~------------ 193 (382)
|+|||+|++. ...|++|++++|.. . +.+-|+|++.
T Consensus 295 VflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r 374 (564)
T KOG0745|consen 295 VFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR 374 (564)
T ss_pred EEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH
Confidence 9999999986 34689999999821 1 1122333320
Q ss_pred -----------C-------------c----------------------cccchhhhcccc-eEEecCCCHHHHHHHHHHH
Q 016800 194 -----------Y-------------I----------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHI 226 (382)
Q Consensus 194 -----------~-------------~----------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~ 226 (382)
+ . ..+.|.+.-|+. .+.|..++.+++..+|..-
T Consensus 375 R~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEP 454 (564)
T KOG0745|consen 375 RLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEP 454 (564)
T ss_pred hhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcc
Confidence 0 0 014567777887 6799999999999888651
Q ss_pred -----------HHHhCC--CCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHhc
Q 016800 227 -----------CNEEGL--NLDAEALSTLSSIS---QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 227 -----------~~~~~~--~~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~~~ 264 (382)
+...++ .+++++++.|++.+ +--.|-+..+++++-..+
T Consensus 455 knaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Llea 508 (564)
T KOG0745|consen 455 KNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEA 508 (564)
T ss_pred hhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh
Confidence 111232 47899999999876 223566666676665544
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-09 Score=101.28 Aligned_cols=121 Identities=29% Similarity=0.368 Sum_probs=73.5
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee------cCCCcchHHHH
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN------ASDDRGINVVR 131 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~------~~~~~~~~~~~ 131 (382)
..|.|++||+..++.+.-....+. |++|+||||||||.+|..+...+ |.......++.. +....+...+.
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lL--Ppls~~E~lE~s~I~s~~g~~~~~~~~~~ 251 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLL--PPLSIPEALEVSAIHSLAGDLHEGCPLKI 251 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccC--CCCChHHHHHHHHHhhhcccccccCccce
Confidence 389999999999999986666654 69999999999999999887765 211111111111 10000000000
Q ss_pred --------HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 132 --------TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 132 --------~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
+..........+....++.+..+...|+++||+..+..+..+.|+.-||+.
T Consensus 252 ~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 252 HRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred eCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccC
Confidence 000000000001111233344457789999999999999999999999864
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.6e-08 Score=87.90 Aligned_cols=164 Identities=15% Similarity=0.065 Sum_probs=103.5
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc------------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------------ 126 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~------------ 126 (382)
.|..++|++.....|.-..-......+||.|+.|+||||++++++..|-.-..... ..+++.-...
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~g--c~f~cdP~~P~~~c~~c~~k~~ 92 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIG--CPFNCDPDDPEEMCDECRAKGD 92 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecC--CCCCCCCCChhhhhHHHHhhcc
Confidence 56789999999988876666666667999999999999999999998721110000 0011100000
Q ss_pred ----------------------hH------HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHH
Q 016800 127 ----------------------IN------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRT 178 (382)
Q Consensus 127 ----------------------~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~ 178 (382)
.+ ++...++. ......++....+++.|++|||+..+....++.|+..
T Consensus 93 e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~-----g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~ 167 (423)
T COG1239 93 ELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEE-----GPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDV 167 (423)
T ss_pred ccccccccceecceecCCCccchhhhccccCHHHHHhc-----CccccCCcchhhccCCEEEEeccccccHHHHHHHHHH
Confidence 00 00011110 0000123334456888999999999999999999999
Q ss_pred HHhc-------------CCceEEEEeecCc-cccchhhhcccc-eEEecCCCH-HHHHHHHHHHHHH
Q 016800 179 METY-------------SKVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICNE 229 (382)
Q Consensus 179 le~~-------------~~~~~~Il~~~~~-~~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~~ 229 (382)
+++. +..+.+|.+.|+. ..|.+.|+.|+. .+...++.. ++...++.+...-
T Consensus 168 aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 168 AAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred HHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 9863 2344455555654 468899999976 676666654 5566666655543
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=102.18 Aligned_cols=123 Identities=26% Similarity=0.431 Sum_probs=86.5
Q ss_pred CcccCcHHHHHHHHHHHHcCC-----C-Cc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH----
Q 016800 61 KDVAHQEEVVRVLTNTLETAN-----C-PH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN---- 128 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-----~-~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~---- 128 (382)
+.++||++++..+...+...+ . |. ++|.||+|+|||-+|++++..+++.. ..++.++.+....+.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhhhhhhhccC
Confidence 467899999999988886432 1 22 89999999999999999999997653 456666665421100
Q ss_pred -----HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEee
Q 016800 129 -----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (382)
Q Consensus 129 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~ 192 (382)
.-.+....+... ....++.||++||++...++.++.|++++++.. .+++||+|+
T Consensus 639 sp~gyvG~e~gg~Ltea----------vrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTs 708 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEA----------VKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTS 708 (898)
T ss_pred CCcccccchhHHHHHHH----------HhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEec
Confidence 000111111111 112378899999999999999999999999653 578899998
Q ss_pred cCcc
Q 016800 193 NYIS 196 (382)
Q Consensus 193 ~~~~ 196 (382)
|...
T Consensus 709 n~~~ 712 (898)
T KOG1051|consen 709 NVGS 712 (898)
T ss_pred ccch
Confidence 7643
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=94.32 Aligned_cols=154 Identities=25% Similarity=0.290 Sum_probs=98.0
Q ss_pred CCCc---EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC------CcchHHHHHHHHHHHHhhhcCCCCCCCC
Q 016800 81 NCPH---MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD------DRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (382)
Q Consensus 81 ~~~~---lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (382)
.++| +|+|||||||||.+|+.+.+-++.... ++ +|++. ..+...+|..+..........+
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP---KI--VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g------ 320 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP---KI--VNGPEILNKYVGESEENVRKLFADAEEEQRRLG------ 320 (744)
T ss_pred CccceeeEEEECCCCCChhHHHHHHHHHhcCCCC---cc--cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhC------
Confidence 4456 899999999999999999999875432 11 34432 1233456665554332211111
Q ss_pred CCCCcEEEEEeCCCCCC-------------HHHHHHHHHHHHh--cCCceEEEEeecCccccchhhhcc--cc-eEEecC
Q 016800 152 PCPPYKIIILDEADSMT-------------EDAQNALRRTMET--YSKVTRFFFICNYISRIIEPLASR--CA-KFRFKP 213 (382)
Q Consensus 152 ~~~~~~vliiDe~d~l~-------------~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sr--~~-~i~~~~ 213 (382)
..++-.|||+||+|.+. ....|.|+.-|+. .-.+..+|-.||..+.+++++.+- +. .++..-
T Consensus 321 ~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsL 400 (744)
T KOG0741|consen 321 ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISL 400 (744)
T ss_pred ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeC
Confidence 01266799999999773 3457888887763 335677888899999999999874 43 577777
Q ss_pred CCHHHHHHHHHH---HHHHhCCCCCHH-HHHHHHHhc
Q 016800 214 LSEEVMSSRVLH---ICNEEGLNLDAE-ALSTLSSIS 246 (382)
Q Consensus 214 ~~~~~~~~~l~~---~~~~~~~~~~~~-~~~~l~~~s 246 (382)
|++.-..++++- +.+..+. ++++ .++.|+..+
T Consensus 401 PDE~gRlQIl~IHT~rMre~~~-l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 401 PDEKGRLQILKIHTKRMRENNK-LSADVDLKELAALT 436 (744)
T ss_pred CCccCceEEEEhhhhhhhhcCC-CCCCcCHHHHHHHh
Confidence 877655555433 3333333 3333 366677655
|
|
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=87.80 Aligned_cols=92 Identities=21% Similarity=0.325 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCCCC------------HHHHHHHHHHHHhcC----------CceEEEEee----cCccccchhhhcccc-
Q 016800 155 PYKIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~------------~~~~~~Ll~~le~~~----------~~~~~Il~~----~~~~~l~~~l~sr~~- 207 (382)
...+|+|||+|++. ...|.-|+.++|... ++..||..+ ..|+.+.|.|.-|+.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 45699999999873 234677899888432 233344433 567889999999998
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc
Q 016800 208 KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s 246 (382)
.+++.+++.+++..+|.. ..+.+|+ .+++++++.|++.+
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 899999999999988754 2334555 47899999988765
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=81.65 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=75.1
Q ss_pred CcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh
Q 016800 65 HQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 142 (382)
|....++.+.+.++.- ...+++|+|++||||+++|+.+...-.. ....++.+++... . .+.+.. .
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~-~----~~~l~~----a- 68 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASL-P----AELLEQ----A- 68 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCT-C----HHHHHH----C-
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhC-c----HHHHHH----c-
Confidence 4545555555544432 2224999999999999999999886422 1223333344332 1 112222 1
Q ss_pred cCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCceEEEEeecCcc-------ccchhhhcccc--eEEec
Q 016800 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYIS-------RIIEPLASRCA--KFRFK 212 (382)
Q Consensus 143 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~-------~l~~~l~sr~~--~i~~~ 212 (382)
....++|+|+|.++.+.|..|...++.. ..++++|+++...- .+.+.+-.++. .+.++
T Consensus 69 ------------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lP 136 (138)
T PF14532_consen 69 ------------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLP 136 (138)
T ss_dssp ------------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE-
T ss_pred ------------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCC
Confidence 3348999999999999999999999864 56778998886432 24455555554 55555
Q ss_pred C
Q 016800 213 P 213 (382)
Q Consensus 213 ~ 213 (382)
|
T Consensus 137 p 137 (138)
T PF14532_consen 137 P 137 (138)
T ss_dssp -
T ss_pred C
Confidence 4
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.4e-08 Score=77.75 Aligned_cols=95 Identities=29% Similarity=0.326 Sum_probs=57.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc--------------------hHHHHHHHHHHHHhhh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--------------------INVVRTKIKTFAAVAV 142 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~~~~~~ 142 (382)
.+++|+||+|+|||++++.++..+.... ..++.+++..... ....+. +......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRL-ALALARK-- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHH-HHHHHHh--
Confidence 4699999999999999999999985442 2345554432111 111111 1111111
Q ss_pred cCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHH--------HHHhcCCceEEEEeecC
Q 016800 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRR--------TMETYSKVTRFFFICNY 194 (382)
Q Consensus 143 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~--------~le~~~~~~~~Il~~~~ 194 (382)
. ...++++||++.+.......... ..........+|+++|.
T Consensus 77 -~----------~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 -L----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred -c----------CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 0 24799999999997665554332 23344556677888875
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=88.02 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=60.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
..+++|+||+|+|||+++.++++++.... ...++.+...+. ...+......+....... ....+|||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~~~l--~~~l~~~~~~~~~~~~~~---------~~~dlLiI 183 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPFVEG--FGDLKDDFDLLEAKLNRM---------KKVEVLFI 183 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEHHHH--HHHHHHHHHHHHHHHHHh---------cCCCEEEE
Confidence 34599999999999999999999985431 234455544321 122222111111100000 14579999
Q ss_pred eCCCC-------CCHHHHHHHHHHHHhcCC-ceEEEEeecCc
Q 016800 162 DEADS-------MTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (382)
Q Consensus 162 De~d~-------l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~ 195 (382)
||++. .+.-....|+.+++.... ...+|+++|..
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 99943 445556788888887643 34578888754
|
|
| >PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-08 Score=78.54 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=91.9
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.+++|....+.++++++++..+|..+++..++++...|.++..++..+..+++..
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 6889999999999999999999999999999999999999999999999999998887752
Q ss_pred --------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHHccCCCcc
Q 016800 329 --------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEEF 378 (382)
Q Consensus 329 --------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~~~~~~~~ 378 (382)
..++.+.+..+++.+.++...++...++++.+|.++++++..-.-.+...
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~~~~~~~~~ 138 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQLKSLPSPDE 138 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhcccccc
Confidence 34778889999999999999999999999999999999998655444443
|
It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.7e-08 Score=89.08 Aligned_cols=131 Identities=22% Similarity=0.305 Sum_probs=77.4
Q ss_pred HHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH-HHH---HH--Hh
Q 016800 69 VVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-IKT---FA--AV 140 (382)
Q Consensus 69 ~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~---~~--~~ 140 (382)
++.....++.+ ....+++|+||+|+|||+++.++++++...+ ..++.++..+. ...+... ... .. ..
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l--~~~l~~~~~~~~~~~~~~~~ 242 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADEL--IEILREIRFNNDKELEEVYD 242 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHH--HHHHHHHHhccchhHHHHHH
Confidence 33444445542 1225699999999999999999999986543 34555555332 1111110 000 00 00
Q ss_pred hhcCCCCCCCCCCCCcEEEEEeCCCCC--CHHHHHHHHHHHHhcCC-ceEEEEeecCcc-c----cchhhhccc----ce
Q 016800 141 AVGSGQRRGGYPCPPYKIIILDEADSM--TEDAQNALRRTMETYSK-VTRFFFICNYIS-R----IIEPLASRC----AK 208 (382)
Q Consensus 141 ~~~~~~~~~~~~~~~~~vliiDe~d~l--~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~-~----l~~~l~sr~----~~ 208 (382)
.. ....+|||||++.. +...+..|+.+++.... ...+|++||... . +.+.+.||. .+
T Consensus 243 ~l-----------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~ 311 (329)
T PRK06835 243 LL-----------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTL 311 (329)
T ss_pred Hh-----------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEE
Confidence 00 14569999999655 56678889999987643 345788887542 2 334566664 35
Q ss_pred EEecCCC
Q 016800 209 FRFKPLS 215 (382)
Q Consensus 209 i~~~~~~ 215 (382)
+.|...+
T Consensus 312 i~~~G~d 318 (329)
T PRK06835 312 LKFYGED 318 (329)
T ss_pred EEecCcC
Confidence 6665433
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=92.18 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=73.9
Q ss_pred cCCchhhhhcCCCCCCcccC----cHHHHHHHHHHHHcC----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 46 QSSQPWVEKYRPKQVKDVAH----QEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g----~~~~~~~l~~~l~~~----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.+..|. .+...+|+++.. +..+......++... ...+++|+||+|+|||+++.++++++...+ ..+.
T Consensus 114 ~a~~p~--~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~ 188 (306)
T PRK08939 114 SIYMPK--DLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSST 188 (306)
T ss_pred HcCCCH--hHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEE
Confidence 455553 344556666653 334444455566532 233599999999999999999999985332 2333
Q ss_pred EeecCCCcchHHHHHHHH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC--CHHHHHHHH-HHHHhc-CCceEE
Q 016800 118 ELNASDDRGINVVRTKIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSM--TEDAQNALR-RTMETY-SKVTRF 188 (382)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l--~~~~~~~Ll-~~le~~-~~~~~~ 188 (382)
.+..++ ....+..... ..... . .+..++||||+... +.-....++ .+++.. ......
T Consensus 189 ~~~~~~--l~~~lk~~~~~~~~~~~l~~-l-----------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~t 254 (306)
T PRK08939 189 LLHFPE--FIRELKNSISDGSVKEKIDA-V-----------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPT 254 (306)
T ss_pred EEEHHH--HHHHHHHHHhcCcHHHHHHH-h-----------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeE
Confidence 333322 1111111110 00000 0 15579999999765 444443444 455654 355668
Q ss_pred EEeecCc
Q 016800 189 FFICNYI 195 (382)
Q Consensus 189 Il~~~~~ 195 (382)
|++||..
T Consensus 255 i~TSNl~ 261 (306)
T PRK08939 255 FFTSNFD 261 (306)
T ss_pred EEECCCC
Confidence 8888854
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.6e-08 Score=79.80 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=80.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCC---CceEEeecCCCcch---HHHHHHHHHHHHhhhcCCCC--CCCCCCCCc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYK---SRVLELNASDDRGI---NVVRTKIKTFAAVAVGSGQR--RGGYPCPPY 156 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~---~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~ 156 (382)
++++|++|+|||+++..++..+....... ..++.+...+.... ..+.+.+............. .......+.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999998885544322 12223333221111 12222222111000000000 000012256
Q ss_pred EEEEEeCCCCCCHHHH--------HHHHHHHHh-cCCceEEEEeecCccc-cchhhhcccceEEecCCCHHHHHHHHHHH
Q 016800 157 KIIILDEADSMTEDAQ--------NALRRTMET-YSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHI 226 (382)
Q Consensus 157 ~vliiDe~d~l~~~~~--------~~Ll~~le~-~~~~~~~Il~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 226 (382)
-++|||.+|.+..... +.|..++.. .+.++.+++++.+... -..........+.+.+++.+++.+++.+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 7899999999876332 345556665 3556778887764332 12222223357899999999999999876
Q ss_pred HH
Q 016800 227 CN 228 (382)
Q Consensus 227 ~~ 228 (382)
++
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 64
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-06 Score=88.78 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=115.8
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
|..-.+++-++...+.+... ...+-.+++||+|+||||++..++.... ....+.++..+......+...+..
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~~-----~~~w~~l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGKN-----NLGWYSLDESDNQPERFASYLIAA 81 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhCC-----CeEEEecCcccCCHHHHHHHHHHH
Confidence 45556888888887776532 2334589999999999999999886431 122233343443222233333322
Q ss_pred HHHhhhcC-CC------CC--C-----------CC-CCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCceEEEEeecC
Q 016800 137 FAAVAVGS-GQ------RR--G-----------GY-PCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 137 ~~~~~~~~-~~------~~--~-----------~~-~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
+....... .. .. . .. ..+.+-+|||||+|.+.... .+.+..++...+++..+|+++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 21110000 00 00 0 00 11356799999999997554 45777778877888888887754
Q ss_pred cccc-chhhhcccceEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 016800 195 ISRI-IEPLASRCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (382)
Q Consensus 195 ~~~l-~~~l~sr~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~ 255 (382)
...+ ...++-+...+.+. +++.+|...++... .|..++++.+..+.+.++|++--+.-
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l~l 224 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATALQL 224 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHHHH
Confidence 2222 22333333344444 88999999998543 36778999999999999999976543
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.4e-07 Score=87.74 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=125.6
Q ss_pred cHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC--CC--cchHHHHHHHHHHHHh
Q 016800 66 QEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS--DD--RGINVVRTKIKTFAAV 140 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~ 140 (382)
|++.+..+.-..-+. ....++|.|+.|+||+++++.+...+-. ...+..+... +. .+--++...+..
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~---- 79 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGIADDRLLGGLDLAATLRA---- 79 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCCcHHHccCCchHHhHhhc----
Confidence 556665555444444 5556999999999999999999988722 1233333222 11 111112222211
Q ss_pred hhcCC-CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC-----------ceEEEEeecC-----ccccchhhh
Q 016800 141 AVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-----------VTRFFFICNY-----ISRIIEPLA 203 (382)
Q Consensus 141 ~~~~~-~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~-----------~~~~Il~~~~-----~~~l~~~l~ 203 (382)
+.. ...+.+......|+++||+..+++..++.|+..|++..- ...|++++.. ...+.+++.
T Consensus 80 --g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lL 157 (584)
T PRK13406 80 --GRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALA 157 (584)
T ss_pred --CCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhH
Confidence 111 123333444678999999999999999999999996521 1235454422 234888999
Q ss_pred cccc-eEEecCCCHHHHH-------HHHHHHHHHhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHhc----CCC
Q 016800 204 SRCA-KFRFKPLSEEVMS-------SRVLHICNEEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF----GSS 267 (382)
Q Consensus 204 sr~~-~i~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~l~~~s---~g-dlr~a~~~l~~~~~~~----~~~ 267 (382)
.|+. .+.+..++..+.. .+...+..-.++.++++.+.+++..+ +- .+|..+.++..+...+ ...
T Consensus 158 DRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~ 237 (584)
T PRK13406 158 DRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTA 237 (584)
T ss_pred hheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 9998 7888887765442 12221211236789999988877654 31 5677777766554443 467
Q ss_pred CChhhHhhhh
Q 016800 268 ITSKDLISVS 277 (382)
Q Consensus 268 It~~~v~~~~ 277 (382)
|+.++|.+++
T Consensus 238 V~~~dv~~Aa 247 (584)
T PRK13406 238 VEEEDLALAA 247 (584)
T ss_pred CCHHHHHHHH
Confidence 9999998876
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-06 Score=71.56 Aligned_cols=138 Identities=20% Similarity=0.242 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
...+...+.... .-.++||+|||||++++.+++.+ ...++.+|+.+......+...+.......
T Consensus 22 ~~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~~~l~ril~G~~~~G-------- 85 (231)
T PF12774_consen 22 FLTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDYQSLSRILKGLAQSG-------- 85 (231)
T ss_dssp HHHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-HHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccHHHHHHHHHHHhhcC--------
Confidence 344444454332 25789999999999999999988 46678899998888888887777766542
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-------hcC-------------CceEEEEeecC----ccccchhhhcc
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQNALRRTME-------TYS-------------KVTRFFFICNY----ISRIIEPLASR 205 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le-------~~~-------------~~~~~Il~~~~----~~~l~~~l~sr 205 (382)
-.+.+||+++++.+....+-..+. ... +++.+.++.|+ ...+++.+++-
T Consensus 86 -------aW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~l 158 (231)
T PF12774_consen 86 -------AWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKAL 158 (231)
T ss_dssp --------EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTT
T ss_pred -------chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHH
Confidence 389999999999876554443332 111 23445555553 34688999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCC
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLN 233 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (382)
+..+.+..|+...+.+++ +-..|..
T Consensus 159 FRpvam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 159 FRPVAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp EEEEE--S--HHHHHHHH---HHCCCTS
T ss_pred hheeEEeCCCHHHHHHHH---HHHcCch
Confidence 999999999988877776 4455653
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-08 Score=102.45 Aligned_cols=52 Identities=48% Similarity=0.967 Sum_probs=48.6
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHH
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~l 98 (382)
...||.+||||++|+|++||+++++.|..++..++.||++|+||||+||+..
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 3569999999999999999999999999999999999999999999999643
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.6e-07 Score=88.35 Aligned_cols=137 Identities=23% Similarity=0.282 Sum_probs=85.6
Q ss_pred CCcccCcHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--
Q 016800 60 VKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-- 125 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~------------~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-- 125 (382)
...+.|++.+++.+.-.+-.|.. -|+|+.|.||+|||.+.+.+.+.+ ..-++.++....
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a-------Pr~vytsgkgss~~ 357 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA-------PRGVYTSGKGSSAA 357 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC-------CceEEEcccccccc
Confidence 34778999999888766644311 259999999999999999998875 222223322111
Q ss_pred chH--HHHHHH-HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEE
Q 016800 126 GIN--VVRTKI-KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFF 189 (382)
Q Consensus 126 ~~~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~I 189 (382)
+.. .+++.. ..+. ... +....+...|+.|||+|+|+.....+|...||... ..+.++
T Consensus 358 GLTAav~rd~~tge~~---Lea----GALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvL 430 (682)
T COG1241 358 GLTAAVVRDKVTGEWV---LEA----GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVL 430 (682)
T ss_pred CceeEEEEccCCCeEE---EeC----CEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhh
Confidence 110 011111 0000 000 01112266799999999999999999999999542 334455
Q ss_pred EeecCcc-------------ccchhhhcccceEE
Q 016800 190 FICNYIS-------------RIIEPLASRCAKFR 210 (382)
Q Consensus 190 l~~~~~~-------------~l~~~l~sr~~~i~ 210 (382)
.++|+.. .++++|.||+..+.
T Consensus 431 AAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLif 464 (682)
T COG1241 431 AAANPKFGRYDPKKTVAENINLPAPLLSRFDLIF 464 (682)
T ss_pred hhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeE
Confidence 5666543 26789999999543
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=80.85 Aligned_cols=126 Identities=18% Similarity=0.206 Sum_probs=70.0
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC--CceEEeecCC---CcchHHHHHHHHHHHHhhhcCCCC
Q 016800 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK--SRVLELNASD---DRGINVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 73 l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~--~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~ 147 (382)
+.+.+..+...+++|+|+|||||||+|.++++.+.. .... .....++... ....+.+...+...... .
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~-~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~---~--- 80 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFW-KLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN---D--- 80 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh-hcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc---C---
Confidence 334445555557999999999999999999998631 0000 0000001100 01123333333322111 0
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHH
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 225 (382)
.+..++||||+..-...-. ..... + .....+.+.++||+..+.|.+++++++...|+.
T Consensus 81 ------~~~dlLIIDd~G~~~~~~~--------wh~~~----~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 81 ------YRIPLIIFDDAGIWLSKYV--------WYEDY----M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred ------CCCCEEEEeCCchhhcccc--------hhhhc----c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 0335899999643211100 00000 0 123456788999999999999999999998865
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-06 Score=69.19 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=65.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC----------------CCCceEEeecCC-----------------CcchHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL----------------YKSRVLELNASD-----------------DRGINVVR 131 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~----------------~~~~~~~~~~~~-----------------~~~~~~~~ 131 (382)
++++|+||+||||++..++..+...++ ..+.++.+.... ....+...
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le 87 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLE 87 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHH
Confidence 899999999999999999988753321 111222222110 00112222
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---HHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccce
Q 016800 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 208 (382)
+........+.. ...++||||+..|- +....++-.+|....+ ....+--++.+-+...++++...
T Consensus 88 ~i~~~al~rA~~-----------~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik~~~~v 155 (179)
T COG1618 88 EIAIPALRRALE-----------EADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIKKLGGV 155 (179)
T ss_pred HHhHHHHHHHhh-----------cCCEEEEecccchhhccHHHHHHHHHHhcCCCc-EEEEEecccCChHHHHhhhcCCE
Confidence 111111111111 33699999999884 4444455555544332 22222224456677888888887
Q ss_pred EEe-cCCCHH
Q 016800 209 FRF-KPLSEE 217 (382)
Q Consensus 209 i~~-~~~~~~ 217 (382)
+-| .|-+.+
T Consensus 156 ~v~lt~~NR~ 165 (179)
T COG1618 156 YVFLTPENRN 165 (179)
T ss_pred EEEEccchhh
Confidence 664 444444
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-06 Score=91.44 Aligned_cols=188 Identities=15% Similarity=0.076 Sum_probs=104.4
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-------------
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS------------- 122 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~------------- 122 (382)
..+++++|.+..++.+..++... ....+-|+|++|+||||+|++++..+.... .. . +.++..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F-~g-~-vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF-QS-S-VFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC-Ce-E-EEeeccccccchhhccccc
Confidence 46789999999999998887543 222389999999999999999988764321 11 1 111110
Q ss_pred -CCcc-hHHH-HHHHHHHHHhhhcCCCC---CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 123 -DDRG-INVV-RTKIKTFAAVAVGSGQR---RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 123 -~~~~-~~~~-~~~l~~~~~~~~~~~~~---~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
.... ...+ ...+............. ....-.+++-+||+|+++.. ...+.|....+......++|+||.+..
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 0000 0000 11111111000000000 00001125668999998753 445555544444345567888877543
Q ss_pred ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHhcCCCHHH
Q 016800 197 RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD--AEALSTLSSISQGDLRR 252 (382)
Q Consensus 197 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~s~gdlr~ 252 (382)
-+... .-..++.++.++.++..+++.+.+-+....-+ .+....+++.++|-|-.
T Consensus 336 vl~~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 336 FLRAH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred HHHhc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 32110 01237889999999999888877654332211 23466788899997754
|
syringae 6; Provisional |
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=75.16 Aligned_cols=109 Identities=21% Similarity=0.303 Sum_probs=61.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCC--CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCC--------CCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR--------GGYPC 153 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~ 153 (382)
+++++||+|+|||+++..+++.+..... ....++.++++.......+...+.............. .....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998732100 0244555555433222222222222111111000000 00001
Q ss_pred CCcEEEEEeCCCCC-CHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 154 PPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 154 ~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.+..+|+|||+|.+ +.+..+.|..+.+ ...+.+|+++.+
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 13369999999999 8888888877776 556778888765
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=83.19 Aligned_cols=184 Identities=23% Similarity=0.235 Sum_probs=116.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC---CCCCCCCCCcEEEE
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKIII 160 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~vli 160 (382)
++++.|.+|+||-.+++++...-- ....++-+|+... +..-+.+.+-.+......+.. ..+.+.......++
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~----~~gpfvAvNCaAi-p~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSE----AAGPFVAVNCAAI-PEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhccc----ccCCeEEEEeccc-hHHhhhHHHhccCccccccchhccccccceecCCCccH
Confidence 399999999999999999987642 3457788888754 323333322222211111100 12223345667999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcC----------CceEEEEeecCcc-------ccchhhhcccc--eEEecCCCHH-HHH
Q 016800 161 LDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYIS-------RIIEPLASRCA--KFRFKPLSEE-VMS 220 (382)
Q Consensus 161 iDe~d~l~~~~~~~Ll~~le~~~----------~~~~~Il~~~~~~-------~l~~~l~sr~~--~i~~~~~~~~-~~~ 220 (382)
+||+..|+...|..|++.+++.. -.+++|.+|+..- ..-+.+--|.. ++.++|+.+. +..
T Consensus 413 ldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~ 492 (606)
T COG3284 413 LDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRI 492 (606)
T ss_pred HHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccH
Confidence 99999999999999999998652 1344555554321 12233333443 6677776542 333
Q ss_pred HHHHHHHHHh---CCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHhc-CCCCChhh
Q 016800 221 SRVLHICNEE---GLNLDAEALSTLSSI-SQGDLRRAITYLQGAARLF-GSSITSKD 272 (382)
Q Consensus 221 ~~l~~~~~~~---~~~~~~~~~~~l~~~-s~gdlr~a~~~l~~~~~~~-~~~It~~~ 272 (382)
..|.++.+++ ...++++++..|... -.||+|.+.+.++.++..+ ++.|...+
T Consensus 493 ~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~d 549 (606)
T COG3284 493 PLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSD 549 (606)
T ss_pred HHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEccc
Confidence 3344444433 467899998877664 5999999999999998877 44455443
|
|
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.8e-07 Score=85.33 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=86.4
Q ss_pred cccCcHHHHHHHHHHHHcC---------CC---CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH-
Q 016800 62 DVAHQEEVVRVLTNTLETA---------NC---PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN- 128 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~---------~~---~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~- 128 (382)
.+.|++.+++.+.-.+-.| +. -|+|++|.||+|||.+.+.+.+.+- .+ ++.++.......
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p-Rg------~yTSGkGsSavGL 502 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP-RG------VYTSGKGSSAVGL 502 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC-cc------eeecCCccchhcc
Confidence 6678888887766555332 11 2499999999999999999888762 11 112221110000
Q ss_pred --------HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceE
Q 016800 129 --------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTR 187 (382)
Q Consensus 129 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~ 187 (382)
+-++.+.. .+-...++..+..|||+|+|+......|++.||.- ...+.
T Consensus 503 TayVtrd~dtkqlVLe-----------sGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 503 TAYVTKDPDTRQLVLE-----------SGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred eeeEEecCccceeeee-----------cCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 00000000 00011126679999999999999999999999843 34566
Q ss_pred EEEeecCcc-------------ccchhhhcccce--EEecCCCHH
Q 016800 188 FFFICNYIS-------------RIIEPLASRCAK--FRFKPLSEE 217 (382)
Q Consensus 188 ~Il~~~~~~-------------~l~~~l~sr~~~--i~~~~~~~~ 217 (382)
++.++|+.. .++++|.||+.. +-++++++.
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 777777422 278999999994 456666654
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-06 Score=82.55 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=97.3
Q ss_pred CcHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc--chHHHHHH
Q 016800 65 HQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR--GINVVRTK 133 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~---------~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 133 (382)
+++..+..+...+.-.. .+.+|++|+||+|||++++++++++ +..++++++.... ........
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhcccchhHHH
Confidence 45555555555554322 1238999999999999999999998 5677777764321 11111122
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHH--h---cCCceEEEEeecCccccch
Q 016800 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTME--T---YSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le--~---~~~~~~~Il~~~~~~~l~~ 200 (382)
+..+....... ..-|+++-++|-+. ...+..+...+. . ..+.+.||.+++..+.+.+
T Consensus 479 l~~~f~~a~~~----------~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 479 LQAIFSRARRC----------SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred HHHHHHHHhhc----------CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCH
Confidence 22222221111 44577777776653 222334444443 1 2345667888888999999
Q ss_pred hhhcccc-eEEecCCCHHHHHHHHHHHHHHhC
Q 016800 201 PLASRCA-KFRFKPLSEEVMSSRVLHICNEEG 231 (382)
Q Consensus 201 ~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~ 231 (382)
.+++-+. .+.++.+++++..+||+.......
T Consensus 549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 9999876 899999999999999999887654
|
|
| >KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-06 Score=78.17 Aligned_cols=228 Identities=18% Similarity=0.242 Sum_probs=120.8
Q ss_pred cccCcHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC--cch
Q 016800 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD--RGI 127 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~ 127 (382)
.+.|+..++..+.-.+-.|.. -|+||.|.|||||+.+.+..++... ..++ ..+... .+.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~------RAV~-tTGqGASavGL 522 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP------RAVF-TTGQGASAVGL 522 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCc------ceeE-eccCCccccce
Confidence 566999999888877754411 1499999999999999998877541 1111 111110 000
Q ss_pred H--HHHHHHH-HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceEEEEe
Q 016800 128 N--VVRTKIK-TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFI 191 (382)
Q Consensus 128 ~--~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il~ 191 (382)
. ..++-+. .+. ... +....+.+.|.+|||+|+|+......+.+.||.- ...+.+|.+
T Consensus 523 Ta~v~KdPvtrEWT---LEa----GALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAA 595 (854)
T KOG0477|consen 523 TAYVRKDPVTREWT---LEA----GALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAA 595 (854)
T ss_pred eEEEeeCCccceee---ecc----CeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhhee
Confidence 0 0000000 000 000 0011236779999999999987766777777643 245667787
Q ss_pred ecCcc-------------ccchhhhcccceE-----EecCCCHHHHHHHHHH-HHHHh-------CC----------CCC
Q 016800 192 CNYIS-------------RIIEPLASRCAKF-----RFKPLSEEVMSSRVLH-ICNEE-------GL----------NLD 235 (382)
Q Consensus 192 ~~~~~-------------~l~~~l~sr~~~i-----~~~~~~~~~~~~~l~~-~~~~~-------~~----------~~~ 235 (382)
+|+.. .+..+|.||+.++ .+.|...+.+.+++.. ..+.+ +. .++
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ip 675 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIP 675 (854)
T ss_pred cCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccCh
Confidence 77621 3678999999865 3455555555555432 22211 11 144
Q ss_pred HHHHHHHHHhc---------CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHH
Q 016800 236 AEALSTLSSIS---------QGDLRRAITYLQGAARLF----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANK 302 (382)
Q Consensus 236 ~~~~~~l~~~s---------~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (382)
.+.+...+.++ .+|..+.-.+...+-..+ +-.||..+++.++....-..--.+-+.+...|...|+.
T Consensus 676 q~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~ 755 (854)
T KOG0477|consen 676 QELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIR 755 (854)
T ss_pred HHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHH
Confidence 55555544433 344444333333332222 35788888887764221111112333344445555554
Q ss_pred H
Q 016800 303 E 303 (382)
Q Consensus 303 ~ 303 (382)
.
T Consensus 756 v 756 (854)
T KOG0477|consen 756 V 756 (854)
T ss_pred H
Confidence 4
|
|
| >KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-06 Score=83.84 Aligned_cols=137 Identities=23% Similarity=0.266 Sum_probs=82.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHcC------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec--CC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETA------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA--SD 123 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~--~~ 123 (382)
.-|..+.||+.++..+.-.+-.| .-.|+++.|.||+||+.+.++.+.-+ | .-++..+ +.
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs--P-----R~vYtsGkaSS 414 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS--P-----RSVYTSGKASS 414 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC--C-----cceEecCcccc
Confidence 34567789999997776555333 11369999999999999999887654 2 1122222 11
Q ss_pred CcchH--HHHHHH-HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceE
Q 016800 124 DRGIN--VVRTKI-KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTR 187 (382)
Q Consensus 124 ~~~~~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~ 187 (382)
..+.. .+++.. ..|... . +-.-.++..|..|||+|+|+...+.+|++.||.- +..+.
T Consensus 415 aAGLTaaVvkD~esgdf~iE---A----GALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtS 487 (764)
T KOG0480|consen 415 AAGLTAAVVKDEESGDFTIE---A----GALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTS 487 (764)
T ss_pred cccceEEEEecCCCCceeee---c----CcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhh
Confidence 11110 000000 000000 0 0011126679999999999999999999999953 23455
Q ss_pred EEEeecCcc-------------ccchhhhcccce
Q 016800 188 FFFICNYIS-------------RIIEPLASRCAK 208 (382)
Q Consensus 188 ~Il~~~~~~-------------~l~~~l~sr~~~ 208 (382)
++.++|+.. ++..+|.||+..
T Consensus 488 IlAAANPv~GhYdR~ktl~eNi~msApimSRFDL 521 (764)
T KOG0480|consen 488 ILAAANPVGGHYDRKKTLRENINMSAPIMSRFDL 521 (764)
T ss_pred hhhhcCCcCCccccccchhhhcCCCchhhhhhcE
Confidence 666666542 256788899873
|
|
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00011 Score=67.71 Aligned_cols=198 Identities=14% Similarity=0.119 Sum_probs=112.6
Q ss_pred cCcHHHHHHHHHHHHc-CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC--C---cchHHHHHHH-HH
Q 016800 64 AHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD--D---RGINVVRTKI-KT 136 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~-~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~--~---~~~~~~~~~l-~~ 136 (382)
+.++.+-+.+.+.+.. |. .+.+.||..+|||++...+.+.+...+ ..++.++... . ...+.+-..+ ..
T Consensus 14 i~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~~~~~~ 88 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLRWFCEE 88 (331)
T ss_pred cCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence 3555566666666655 43 589999999999999999998885443 3344444332 1 1111111111 11
Q ss_pred HHHh-------------hhcCCCC----CCC---CCCCCcEEEEEeCCCCCCH--HHHHHHHHHH----Hhc-----CCc
Q 016800 137 FAAV-------------AVGSGQR----RGG---YPCPPYKIIILDEADSMTE--DAQNALRRTM----ETY-----SKV 185 (382)
Q Consensus 137 ~~~~-------------~~~~~~~----~~~---~~~~~~~vliiDe~d~l~~--~~~~~Ll~~l----e~~-----~~~ 185 (382)
+... ....... ... ....++-|++|||+|.+.. ...+.|+..+ +.. ...
T Consensus 89 i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~ 168 (331)
T PF14516_consen 89 ISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQK 168 (331)
T ss_pred HHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccce
Confidence 1100 0000000 000 0123667999999998864 3334444444 321 123
Q ss_pred eEEEEeecCccccchhh----hcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPL----ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l----~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
.++|++......+...+ .+-+..+.+++.+.+|+...+. +.+..++++.++.|...++|.|.-.-..+..++
T Consensus 169 L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 169 LRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred EEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45666553222221111 1345578999999999988764 456778888899999999999987666666555
Q ss_pred HhcCCCCChhhH
Q 016800 262 RLFGSSITSKDL 273 (382)
Q Consensus 262 ~~~~~~It~~~v 273 (382)
. ..++.+.+
T Consensus 245 ~---~~~~~~~l 253 (331)
T PF14516_consen 245 E---EQITLEQL 253 (331)
T ss_pred H---ccCcHHHH
Confidence 4 45555544
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-05 Score=67.60 Aligned_cols=193 Identities=20% Similarity=0.248 Sum_probs=108.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCC-C-CCCCCCCCCcEEEEE
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG-Q-RRGGYPCPPYKIIIL 161 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~~vlii 161 (382)
.+|+.||.|.||+.+|+.+...-...+-.+..++++||...++...+...+... .....+. . ..+.....+..++++
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCceEeh
Confidence 499999999999999998876443333445689999998876654443322221 1111111 1 112233446679999
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCC---------ceEEEEeecCc---------cccchhhhcccceEEecCCCH----HHH
Q 016800 162 DEADSMTEDAQNALRRTMETYSK---------VTRFFFICNYI---------SRIIEPLASRCAKFRFKPLSE----EVM 219 (382)
Q Consensus 162 De~d~l~~~~~~~Ll~~le~~~~---------~~~~Il~~~~~---------~~l~~~l~sr~~~i~~~~~~~----~~~ 219 (382)
||+..+..+.|..|++.+|+... ..-|-+++-.. ...-+.+--|.....|..|.- +++
T Consensus 289 deigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edi 368 (531)
T COG4650 289 DEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 (531)
T ss_pred HhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCcccc
Confidence 99999999999999999997531 01111111000 011223333444444444332 222
Q ss_pred HH----HHHHHHHHhC--CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHhc-CCCCChhhHhhhh
Q 016800 220 SS----RVLHICNEEG--LNLDAEALSTLSSIS-------QGDLRRAITYLQGAARLF-GSSITSKDLISVS 277 (382)
Q Consensus 220 ~~----~l~~~~~~~~--~~~~~~~~~~l~~~s-------~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~ 277 (382)
.. -|.+.+...| +.+..++-......+ .||.|.+-.-+...+..+ ++.||.+.|+.-+
T Consensus 369 epnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ei 440 (531)
T COG4650 369 EPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVEDEI 440 (531)
T ss_pred CCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHHHH
Confidence 21 2233333333 445555544433322 689998776666666555 6889988775433
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=77.58 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=33.1
Q ss_pred cccCcHHHHHHHHHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 62 DVAHQEEVVRVLTNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---~~~~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.++|+++.++.+...+. .+..+.++++|++|+|||++++.+.+.+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999983 2233449999999999999999998887443
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.3e-07 Score=78.76 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=83.2
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC--CCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRG 149 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~ 149 (382)
-+..++..++ ++||.||+|+|||.+++.+.+.+... ...+..++.+.......+ ............ ..
T Consensus 25 ll~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~~~----q~~ie~~l~k~~~~~~- 94 (272)
T PF12775_consen 25 LLDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSNQL----QKIIESKLEKRRGRVY- 94 (272)
T ss_dssp HHHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHHHH----HHCCCTTECECTTEEE-
T ss_pred HHHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHHHH----HHHHhhcEEcCCCCCC-
Confidence 3344455544 69999999999999999988765221 112333444332222222 222111111100 00
Q ss_pred CCCCCCcEEEEEeCCCCCCH------HHHHHHHHHHHhcC------------CceEEEEeecCcc---ccchhhhcccce
Q 016800 150 GYPCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYIS---RIIEPLASRCAK 208 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~------~~~~~Ll~~le~~~------------~~~~~Il~~~~~~---~l~~~l~sr~~~ 208 (382)
+...+++-|++|||++.-.+ ...+.|+.+++... ..+.+|.++++.. .+.+.+.+.+.+
T Consensus 95 gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i 174 (272)
T PF12775_consen 95 GPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNI 174 (272)
T ss_dssp EEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEE
T ss_pred CCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEE
Confidence 01234667999999976643 34567777887321 3455666666532 367888888889
Q ss_pred EEecCCCHHHHHHHHHHHHHH
Q 016800 209 FRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~ 229 (382)
+.++.|+.+.+..+...++..
T Consensus 175 ~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp EE----TCCHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhh
Confidence 999999999998888776653
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-06 Score=89.50 Aligned_cols=170 Identities=19% Similarity=0.260 Sum_probs=112.5
Q ss_pred ccCcHHHHHHHHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 63 VAHQEEVVRVLTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
.+-.+-+-+.+.+..+..... .+||.||..+|||+++..+++.. +.+++.+|.... ....+.+..+...
T Consensus 867 yIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEH---TdlqeYiGTyvTd 937 (4600)
T COG5271 867 YIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARET------GHKFVRINNHEH---TDLQEYIGTYVTD 937 (4600)
T ss_pred eEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHh------CccEEEecCccc---chHHHHhhceeec
Confidence 333344444455555443332 39999999999999999999987 567888887654 2334445544432
Q ss_pred hhcCCCCCCCCC---CCCcEEEEEeCCCCCCHHHHHHHHHHHHhc--------------CCceEEEEeecCcc------c
Q 016800 141 AVGSGQRRGGYP---CPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYIS------R 197 (382)
Q Consensus 141 ~~~~~~~~~~~~---~~~~~vliiDe~d~l~~~~~~~Ll~~le~~--------------~~~~~~Il~~~~~~------~ 197 (382)
..+.-....+.- ..+..-|++||....+.+..++|-+++++. +++..+..+.|+|. .
T Consensus 938 d~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~ 1017 (4600)
T COG5271 938 DDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKG 1017 (4600)
T ss_pred CCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHH
Confidence 221111111110 013458999999999999999999999743 34444444455542 3
Q ss_pred cchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 016800 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS 246 (382)
Q Consensus 198 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s 246 (382)
+..+++.|+-.++|...+++|+..+|..+| .+.+.-+..|++..
T Consensus 1018 LSrAFRNRFlE~hFddipedEle~ILh~rc-----~iapSyakKiVeVy 1061 (4600)
T COG5271 1018 LSRAFRNRFLEMHFDDIPEDELEEILHGRC-----EIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHHHHHhhhHhhhcccCcHHHHHHHHhccC-----ccCHHHHHHHHHHH
Confidence 778999999999999999999999996544 46666666666543
|
|
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-05 Score=69.87 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=51.8
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc--CCceEEEEeecCccccc----------------hh-hhcccc-eEEecC
Q 016800 154 PPYKIIILDEADSMTEDAQNALRRTMETY--SKVTRFFFICNYISRII----------------EP-LASRCA-KFRFKP 213 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~----------------~~-l~sr~~-~i~~~~ 213 (382)
..+-||+|||+|+++++....+++.+... .+++.||++.+.. .+. .. +.+-++ .+.+++
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~ 249 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPP 249 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCC
Confidence 35678999999999998877777776643 2577788877532 111 12 222233 689999
Q ss_pred CCHHHHHHHHHHHHHH
Q 016800 214 LSEEVMSSRVLHICNE 229 (382)
Q Consensus 214 ~~~~~~~~~l~~~~~~ 229 (382)
++..++..++...+..
T Consensus 250 ~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 250 PSPSDLERYLNELLES 265 (325)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999988877554
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.1e-07 Score=75.59 Aligned_cols=63 Identities=14% Similarity=0.310 Sum_probs=36.9
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCceEEEEeecC--ccccchhhhcc--cceEEecCCCHHHHH
Q 016800 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNY--ISRIIEPLASR--CAKFRFKPLSEEVMS 220 (382)
Q Consensus 155 ~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~--~~~l~~~l~sr--~~~i~~~~~~~~~~~ 220 (382)
...+++|||+..| .+...+++.++|+. +. .+|.+-.. ...+.+.+++| +.++.+.+-+.+.+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s-~~--~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS-NK--PVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT-TS--EEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC-CC--cEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 4569999999988 45678888888883 22 23443322 34578899988 557777766655543
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-05 Score=73.20 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=65.4
Q ss_pred cCCCCCCcccCcHHHHHHHH---HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 55 YRPKQVKDVAHQEEVVRVLT---NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~---~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
|.|..|+ ....+..|. .+++.+ .|+++.||+|||||+++.++.....+.. + ......
T Consensus 185 ~~P~~~~----~r~k~~~L~rl~~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~s----------G-~f~T~a--- 244 (449)
T TIGR02688 185 YEPEGFE----ARQKLLLLARLLPLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILIS----------G-GTITVA--- 244 (449)
T ss_pred CCcccCC----hHHHHHHHHhhHHHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHc----------C-CcCcHH---
Confidence 5665554 233333333 455544 3799999999999999999888721211 0 001111
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHHHhcC---------CceEEEEeecCcc
Q 016800 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYS---------KVTRFFFICNYIS 196 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~Ll~~le~~~---------~~~~~Il~~~~~~ 196 (382)
..+.......... -+.+.+|+|||+..++. +..+.+..+|++.. ....+|+++|-..
T Consensus 245 ~Lf~~L~~~~lg~--------v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 245 KLFYNISTRQIGL--------VGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred HHHHHHHHHHHhh--------hccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 1111111111110 01678999999999743 34567777787542 3566888887544
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-06 Score=80.60 Aligned_cols=138 Identities=22% Similarity=0.303 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 68 EVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
.....|..+++.....+ ++|+||||||||+++.++++.+.+ ..+..+|..... + +..+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G-----~vi~fvN~~s~F----w---Lqpl~-------- 478 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKG-----KVISFVNSKSHF----W---LQPLA-------- 478 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEEECcccc----c---cchhc--------
Confidence 34466677776543334 999999999999999999998732 122334432111 1 11111
Q ss_pred CCCCCCCCCcEEEEEeCCCCC-CHHHHHHHHHHHHhcC-------------CceEEEEeecCcc---ccchhhhcccceE
Q 016800 147 RRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAKF 209 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sr~~~i 209 (382)
+.+++++||+..- ..-....|+.+|+..+ ....+|++||..- .-.+.|.||...+
T Consensus 479 --------d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f 550 (613)
T PHA02774 479 --------DAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVF 550 (613)
T ss_pred --------cCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEE
Confidence 5579999999332 1223446777777542 1244788887432 2357888999887
Q ss_pred EecC-------------CCHHHHHHHHHHHHHHhCCC
Q 016800 210 RFKP-------------LSEEVMSSRVLHICNEEGLN 233 (382)
Q Consensus 210 ~~~~-------------~~~~~~~~~l~~~~~~~~~~ 233 (382)
.|+. ++....+.+.++...+.++.
T Consensus 551 ~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 551 EFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred ECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 7654 34577888888887776653
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00044 Score=62.67 Aligned_cols=196 Identities=18% Similarity=0.177 Sum_probs=109.3
Q ss_pred CcccCcHHHHHHHHHHHHcCC--CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC--------------
Q 016800 61 KDVAHQEEVVRVLTNTLETAN--CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-------------- 123 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-------------- 123 (382)
..+.+++..+..|...+.+.. .|. +.|+|.+|||||.+.+.+.+...-+. +.+++-+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~------vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLEN------VWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcc------eeeehHHhccHHHHHHHHHHH
Confidence 467789999999999987654 344 69999999999999999999874332 2222211
Q ss_pred -----C--cch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH---HHHHHHHHHHhcC-CceEE
Q 016800 124 -----D--RGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---AQNALRRTMETYS-KVTRF 188 (382)
Q Consensus 124 -----~--~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~---~~~~Ll~~le~~~-~~~~~ 188 (382)
. ... +.+...+..+.+...... .+..-++++|.+|.+..- ..+.|+++-+-.+ +.++|
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~-------~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATN-------RDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc-------cCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE
Confidence 0 001 112222222222111110 114568999999988532 3344444444222 35566
Q ss_pred EEeecCccccchhhhcc--cceEEecCCCHHHHHHHHHHHHHHhCCCCCH----HHHHHHHH---hcCCCHHHHHHHHHH
Q 016800 189 FFICNYISRIIEPLASR--CAKFRFKPLSEEVMSSRVLHICNEEGLNLDA----EALSTLSS---ISQGDLRRAITYLQG 259 (382)
Q Consensus 189 Il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~l~~---~s~gdlr~a~~~l~~ 259 (382)
+++.....+....=-+. ...+.|+.++.+++..++.+--. | .... .-+..+.. ...+|++.+...+..
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p--~-~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~ 229 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP--G-KRKLDVYAQFLHVLLQVFYMACRDVNELRSLISL 229 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc--c-ccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66654433321110011 12789999999999999854211 0 1221 11222221 224599988888887
Q ss_pred HHHhc-----CCCCChhh
Q 016800 260 AARLF-----GSSITSKD 272 (382)
Q Consensus 260 ~~~~~-----~~~It~~~ 272 (382)
.+... ++.|+..+
T Consensus 230 ~wpky~epi~~~~i~~~d 247 (438)
T KOG2543|consen 230 AWPKYCEPITKGKIDPTD 247 (438)
T ss_pred HHHhhccccccCCCChhH
Confidence 77544 34455444
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-06 Score=70.88 Aligned_cols=121 Identities=23% Similarity=0.319 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH-------HHHH
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK-------TFAA 139 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~ 139 (382)
++..+.+...+.++. ...++.||+|||||+++..+.+.+... ...++.+.+. ......+.+... .+..
T Consensus 4 ~~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT-~~Aa~~L~~~~~~~a~Ti~~~l~ 78 (196)
T PF13604_consen 4 EEQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPT-NKAAKELREKTGIEAQTIHSFLY 78 (196)
T ss_dssp HHHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESS-HHHHHHHHHHHTS-EEEHHHHTT
T ss_pred HHHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCc-HHHHHHHHHhhCcchhhHHHHHh
Confidence 344555565665543 247899999999999999988877432 2344444332 223333333211 1111
Q ss_pred hhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
...... ........+..++||||+..++......|++.+.. ..+++|+++++.
T Consensus 79 ~~~~~~-~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 79 RIPNGD-DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp EECCEE-CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cCCccc-ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 000000 00001122567999999999999888888888765 356789998754
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.8e-05 Score=72.08 Aligned_cols=156 Identities=17% Similarity=0.254 Sum_probs=86.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC-CcchHH--HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
+||+||||+|||++|..+|..- .++++.+-.++ ..+... -...++..+.-+..+ .-.++++
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS----------~lsiivv 604 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS----------PLSIIVV 604 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC----------cceEEEE
Confidence 8999999999999999998864 45666554332 222211 112233322222211 4469999
Q ss_pred eCCCCCC------H----HHHHHHHHHHHhcCCc--eEEEEeecCccccchh--hhcccc-eEEecCCCH-HHHHHHHHH
Q 016800 162 DEADSMT------E----DAQNALRRTMETYSKV--TRFFFICNYISRIIEP--LASRCA-KFRFKPLSE-EVMSSRVLH 225 (382)
Q Consensus 162 De~d~l~------~----~~~~~Ll~~le~~~~~--~~~Il~~~~~~~l~~~--l~sr~~-~i~~~~~~~-~~~~~~l~~ 225 (382)
|+++++- + -..++|+-++.+.|+. -.+|+.|++...++.. +.+-+. .+..+.++. +++.++|..
T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 9998872 2 2345566666654443 4566666554332221 122222 678888876 677777632
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Q 016800 226 ICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQGAA 261 (382)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~s~g-----dlr~a~~~l~~~~ 261 (382)
.++ ++++..+.+++.--+ -+.+++.+++.+.
T Consensus 685 ----~n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 685 ----LNI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred ----ccC-CCcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 232 556665555543222 2555555555443
|
|
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.9e-05 Score=69.06 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=69.4
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhc------CCceEEEEeecCcc---ccchhhhccc-ceEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYIS---RIIEPLASRC-AKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~------~~~~~~Il~~~~~~---~l~~~l~sr~-~~i~~~~~~~~~~~~~l~ 224 (382)
.+.||+||++..-... .+.+.+.|-+- .....+||.|++.. .|.+++=+|. ..+.+...+++..+.++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3679999998765544 44444444321 12344667665542 3455665554 478999999999999998
Q ss_pred HHHHHhC-C-------------------CCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 225 HICNEEG-L-------------------NLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 225 ~~~~~~~-~-------------------~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
..+.... . ......++..++.-||-+.++--+.++...
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 8776531 0 124456777788888888887666666554
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.2e-06 Score=64.27 Aligned_cols=74 Identities=27% Similarity=0.437 Sum_probs=45.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC--CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEe
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiD 162 (382)
+.|+||||+|||++++.|++.+...-. ....+...++.+ +-+ .. |. +..++++|
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~----~~w----~g--------------Y~--~q~vvi~D 56 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD----KFW----DG--------------YQ--GQPVVIID 56 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc----chh----hc--------------cC--CCcEEEEe
Confidence 479999999999999999998853210 011222212211 111 11 11 45799999
Q ss_pred CCCCCCHH----HHHHHHHHHHhc
Q 016800 163 EADSMTED----AQNALRRTMETY 182 (382)
Q Consensus 163 e~d~l~~~----~~~~Ll~~le~~ 182 (382)
|+...... ....+++++...
T Consensus 57 D~~~~~~~~~~~~~~~l~~l~s~~ 80 (107)
T PF00910_consen 57 DFGQDNDGYNYSDESELIRLISSN 80 (107)
T ss_pred ecCccccccchHHHHHHHHHHhcC
Confidence 99988754 456677777643
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00026 Score=66.86 Aligned_cols=132 Identities=22% Similarity=0.247 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch-HHHHHHHHHHHHhhhcCCCC
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI-NVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~ 147 (382)
....+.+.+..... .++++||.+|||||+++.+.+.+... .+.++..+.... ....+.+..+......
T Consensus 25 ~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~------~iy~~~~d~~~~~~~l~d~~~~~~~~~~~---- 93 (398)
T COG1373 25 LLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE------IIYINFDDLRLDRIELLDLLRAYIELKER---- 93 (398)
T ss_pred hhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc------eEEEEecchhcchhhHHHHHHHHHHhhcc----
Confidence 33444444444333 58999999999999998888776322 455555443221 1222223332222110
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc----ccchhhhcccceEEecCCCHHHHHH
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS----RIIEPLASRCAKFRFKPLSEEVMSS 221 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~~~~~~~~~ 221 (382)
+...+++||++... +-...+..+.+.... .+++++.... .....+..|...+.+.|++..|...
T Consensus 94 -------~~~yifLDEIq~v~-~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 -------EKSYIFLDEIQNVP-DWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred -------CCceEEEecccCch-hHHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 34599999999985 445566666665544 4556554433 3556777788899999999998865
|
|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.5e-06 Score=62.21 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=48.8
Q ss_pred CcccCcHHHHHHHHH----HHHcCC--CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec----CCCcchHH
Q 016800 61 KDVAHQEEVVRVLTN----TLETAN--CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA----SDDRGINV 129 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~----~l~~~~--~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~----~~~~~~~~ 129 (382)
..+.||.-+.+.+.+ .+.+.. .|- +-|+|++|||||.+++.+|+.++..+..+..+..+.+ +....++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~ 104 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDE 104 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHH
Confidence 467788766655544 444432 222 5699999999999999999998866544443333333 23334445
Q ss_pred HHHHHHHHHH
Q 016800 130 VRTKIKTFAA 139 (382)
Q Consensus 130 ~~~~l~~~~~ 139 (382)
.+..+.....
T Consensus 105 Yk~~L~~~I~ 114 (127)
T PF06309_consen 105 YKEQLKSWIR 114 (127)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=68.08 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=40.7
Q ss_pred cCCchhhh-hcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 46 QSSQPWVE-KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 46 ~~~~~~~~-k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.+|+.. ......+..+.+.......+..++... +.+++.||+|||||+++.+++...
T Consensus 39 ~~~~p~~~~~~~~~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 39 MGGVEAIGMARDSRDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred hccCCccccchhhcCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 45566533 222234455666666666677777663 368999999999999999999864
|
|
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00012 Score=64.92 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=90.7
Q ss_pred cccCcHHHHHHHHHH---HHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNT---LETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~---l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
+++--+++++++.+. +...+ .|+|+.|.+|+||+++++..+.-. +..++.+.....-+..++++.++...
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i~~~~~y~~~~f~~dLk~~~ 81 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFIC------GYEVFQIEITKGYSIKDFKEDLKKAL 81 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHT------TEEEE-TTTSTTTHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHh------ccceEEEEeeCCcCHHHHHHHHHHHH
Confidence 455556666655544 44433 579999999999999998554433 45566666655556777888887766
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHH---------------------HHHH---------------------
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQ---------------------NALR--------------------- 176 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~---------------------~~Ll--------------------- 176 (382)
......+ +..+++++|.+-...... +.+.
T Consensus 82 ~~ag~~~---------~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~ 152 (268)
T PF12780_consen 82 QKAGIKG---------KPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYE 152 (268)
T ss_dssp HHHHCS----------S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHH
T ss_pred HHHhccC---------CCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHH
Confidence 5544332 567888888765532211 1111
Q ss_pred HHHHhcCCceEEEEeecCccc-------cchhhhcccceEEecCCCHHHHHHHHHHHHHH
Q 016800 177 RTMETYSKVTRFFFICNYISR-------IIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 177 ~~le~~~~~~~~Il~~~~~~~-------l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 229 (382)
.+++.-..+..+|++-++... ..|++.++|.+..|.+.+.+.+..+-....+.
T Consensus 153 ~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 153 FFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 111222356667776554322 35888899999999999999888876655443
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0006 Score=67.94 Aligned_cols=190 Identities=19% Similarity=0.209 Sum_probs=110.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
+|......+-++..... +..+.... ++|+-|.|+||||++-.++... .++ .......++.+++......+..+
T Consensus 14 ~P~~~~~~v~R~rL~~~----L~~~~~~RL~li~APAGfGKttl~aq~~~~~-~~~-~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDR----LRRANDYRLILISAPAGFGKTTLLAQWRELA-ADG-AAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHH----HhcCCCceEEEEeCCCCCcHHHHHHHHHHhc-Ccc-cceeEeecCCccCCHHHHHHHHH
Confidence 45555566666655444 44443323 8999999999999999998733 222 12222334444432222222222
Q ss_pred HHHHHhhhcCCC-----------------------CCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcCCceEEEE
Q 016800 135 KTFAAVAVGSGQ-----------------------RRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 135 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~~~~~~~Il 190 (382)
..........+. ....+ .++-.+||||.|..+..+ ...+..+++.-|++..+|+
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~--~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASY--EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhh--cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 211110000000 00111 145699999999997665 4567777888899999999
Q ss_pred eecCc-cccchhhhcccceEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 016800 191 ICNYI-SRIIEPLASRCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (382)
Q Consensus 191 ~~~~~-~~l~~~l~sr~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l 257 (382)
+|... .--...++=|...+++. ..+.+|..+++.. .-+..++...+..|.+.++| .-.++.+.
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~---~~~l~Ld~~~~~~L~~~teG-W~~al~L~ 233 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLND---RGSLPLDAADLKALYDRTEG-WAAALQLI 233 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHH---cCCCCCChHHHHHHHhhccc-HHHHHHHH
Confidence 88553 33334444444433222 3567888888853 22477899999999999988 33444443
|
|
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.4e-05 Score=68.52 Aligned_cols=165 Identities=15% Similarity=0.122 Sum_probs=89.0
Q ss_pred cccCcHHHHHHHHHHH----HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTL----ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l----~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (382)
.+.|..+..+.+..++ ..|....+++.||.|+|||.+........ .....+.-.+.+|+.-....-.+++.-..+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 3556655555555555 45666569999999999999887666551 111223445566664332111122211111
Q ss_pred HHhhh-----cCCC-----------CCCCCCCCCcEEEEEeCCCCCCHH-HHHHHHHHHHh---cCCceEEEEeecCc--
Q 016800 138 AAVAV-----GSGQ-----------RRGGYPCPPYKIIILDEADSMTED-AQNALRRTMET---YSKVTRFFFICNYI-- 195 (382)
Q Consensus 138 ~~~~~-----~~~~-----------~~~~~~~~~~~vliiDe~d~l~~~-~~~~Ll~~le~---~~~~~~~Il~~~~~-- 195 (382)
..... .+.. ..+....+..-++|+||+|..-+. -|-.|..+++- ....+.+|.+|...
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 11100 0000 001111224457777899987543 45555566653 23344455555443
Q ss_pred -cccchhhhcccc---eEEecCCCHHHHHHHHHHHH
Q 016800 196 -SRIIEPLASRCA---KFRFKPLSEEVMSSRVLHIC 227 (382)
Q Consensus 196 -~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~ 227 (382)
+.+-+.++||+. ++-+++.+-++..++.++..
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 456689999986 34455566678888776654
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=98.13 E-value=8e-06 Score=75.58 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=67.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC----------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS----------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 153 (382)
+++|||+.|+|||.+.-.+...+-.+......+.++-.. ...++..+.. .+.
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~---~l~--------------- 125 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVAD---ELA--------------- 125 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHH---HHH---------------
Confidence 499999999999999999988874322111111111000 0011111111 111
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCceEEEEeecCc-cc-------------cchhhhcccceEEecCC
Q 016800 154 PPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-SR-------------IIEPLASRCAKFRFKPL 214 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~-------------l~~~l~sr~~~i~~~~~ 214 (382)
++.++|.+||++--....+-.|-++++.. ...+++|.|+|.+ +. ..+.|.++|.+++++..
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 15679999999887666555555555543 3566778888753 22 23567789998888765
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.5e-05 Score=75.33 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
..+..+++.-...+ ++|+||+|+|||+++.++++.+. ..++.+|.+.... ..+ .+...
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~------G~vlsVNsPt~ks-~Fw-------L~pl~------- 477 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCG------GKSLNVNCPPDKL-NFE-------LGCAI------- 477 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcC------CeEEEeeCCcchh-HHH-------hhhhh-------
Confidence 33444444433333 89999999999999999999983 3345566554321 111 11111
Q ss_pred CCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc-C-------C------ceEEEEeecCccccchhhhc
Q 016800 150 GYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY-S-------K------VTRFFFICNYISRIIEPLAS 204 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~-~-------~------~~~~Il~~~~~~~l~~~l~s 204 (382)
+.+++++|++..-.- +-..-|+..|+.. + . -...|+|+|. ..++.+++-
T Consensus 478 -----D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~ 551 (647)
T PHA02624 478 -----DQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA 551 (647)
T ss_pred -----hceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH
Confidence 557999999853211 1125677777644 1 0 0124556664 678889999
Q ss_pred ccc-eEEecC
Q 016800 205 RCA-KFRFKP 213 (382)
Q Consensus 205 r~~-~i~~~~ 213 (382)
|+. ++.|.+
T Consensus 552 Rf~~~~~F~~ 561 (647)
T PHA02624 552 RFAKVLDFKP 561 (647)
T ss_pred HHHHhccccc
Confidence 987 777754
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.2e-06 Score=75.85 Aligned_cols=147 Identities=23% Similarity=0.270 Sum_probs=73.0
Q ss_pred cccCcHHHHHHHHHHHHcCC------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC--cch
Q 016800 62 DVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD--RGI 127 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~------------~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~ 127 (382)
.+.|++.++..+.=.+-.+. .-|+||.|.||+|||.+.+.+.+.. ...+..++... .+.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~-------pr~v~~~g~~~s~~gL 97 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA-------PRSVYTSGKGSSAAGL 97 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT--------SSEEEEECCGSTCCCC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC-------CceEEECCCCcccCCc
Confidence 56688888876643332221 1269999999999999998665432 11222222110 000
Q ss_pred --HHHHHHH-HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-------------CCceEEEEe
Q 016800 128 --NVVRTKI-KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFI 191 (382)
Q Consensus 128 --~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il~ 191 (382)
...++.. ..+. . ..+....+...|++|||+|.|..+..+.|++.||.. +..+.++.+
T Consensus 98 ta~~~~d~~~~~~~---l----eaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa 170 (331)
T PF00493_consen 98 TASVSRDPVTGEWV---L----EAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAA 170 (331)
T ss_dssp CEEECCCGGTSSEC---E----EE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEE
T ss_pred cceeccccccceeE---E----eCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHH
Confidence 0000000 0000 0 000000115579999999999999999999999953 345667777
Q ss_pred ecCcc-------------ccchhhhcccceEE--ecCCCHHHHHHH
Q 016800 192 CNYIS-------------RIIEPLASRCAKFR--FKPLSEEVMSSR 222 (382)
Q Consensus 192 ~~~~~-------------~l~~~l~sr~~~i~--~~~~~~~~~~~~ 222 (382)
+|+.. .+.++|.||++.+. .++++.+.-..+
T Consensus 171 ~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~l 216 (331)
T PF00493_consen 171 ANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERL 216 (331)
T ss_dssp E--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHH
T ss_pred HhhhhhhcchhhhhHHhcccchhhHhhcCEEEEecccccccccccc
Confidence 77543 26789999999543 355554333333
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-05 Score=72.83 Aligned_cols=143 Identities=18% Similarity=0.251 Sum_probs=84.6
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCC-----------C-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCce
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-----------P-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~-----------~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~ 116 (382)
........| .+.|++++++.+.-++-.|.. . |+|+-|.||+.|+.+.+.+-+-. .--
T Consensus 323 e~is~sIAP----SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-------PIa 391 (729)
T KOG0481|consen 323 ERISKSIAP----SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-------PIA 391 (729)
T ss_pred HHHhhccCc----hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-------ceE
Confidence 344455556 456999999999888865521 1 49999999999999999876642 111
Q ss_pred EEeecCCCcc----hHHHHHHHH-HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC--------
Q 016800 117 LELNASDDRG----INVVRTKIK-TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------- 183 (382)
Q Consensus 117 ~~~~~~~~~~----~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------- 183 (382)
++..+..... ...+++... +|... ++ ....++..||.|||+|+|..+..-++.+.||.-.
T Consensus 392 VYTSGKGSSAAGLTASV~RD~~tReFylE---GG----AMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGI 464 (729)
T KOG0481|consen 392 VYTSGKGSSAAGLTASVIRDPSTREFYLE---GG----AMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI 464 (729)
T ss_pred EEecCCCcccccceeeEEecCCcceEEEe---cc----eEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcc
Confidence 2222221110 011111000 00000 00 0011256799999999999999889999998432
Q ss_pred -----CceEEEEeecCccc-------------cchhhhcccceE
Q 016800 184 -----KVTRFFFICNYISR-------------IIEPLASRCAKF 209 (382)
Q Consensus 184 -----~~~~~Il~~~~~~~-------------l~~~l~sr~~~i 209 (382)
..+.++.++|+... ..++|.||+..+
T Consensus 465 TT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmI 508 (729)
T KOG0481|consen 465 TTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMI 508 (729)
T ss_pred eeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEE
Confidence 23334444554321 458999999854
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.2e-06 Score=80.98 Aligned_cols=96 Identities=13% Similarity=0.249 Sum_probs=66.7
Q ss_pred CCCCCCCCcccccccccCCCCCchHHHHhhccccccCC-----------chhhhh--cCCCCCCcccCcHHHHHHHHHHH
Q 016800 11 SGKNKSPNFTQKFSTTQSSPEKSEDEVKRKMAPVLQSS-----------QPWVEK--YRPKQVKDVAHQEEVVRVLTNTL 77 (382)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~k--~~p~~~~~~~g~~~~~~~l~~~l 77 (382)
...+..|++.+++..+...+.......+|.+....... ..+..+ -+...|+|+.|.++++..+...+
T Consensus 13 ~~~~~~~sl~eyL~~vk~~p~~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ieriv~~l 92 (644)
T PRK15455 13 AAKEEEFSLQEYLELCKQDPSAYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQIVSYF 92 (644)
T ss_pred HhhcccccHHHHHHHHhcChHHHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccCcHHHHHHHHHHH
Confidence 34567889999999987777776666655544332221 112211 23346789999999998888777
Q ss_pred H----c--CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 78 E----T--ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 78 ~----~--~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
. . .+.+.++|.||||+|||++++.+++.+
T Consensus 93 ~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 93 RHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred HHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 2 2 233348999999999999999999976
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=61.71 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=51.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-CCc----------ch-------HHHHHHHHHHHHhhhcCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDR----------GI-------NVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-~~~----------~~-------~~~~~~l~~~~~~~~~~~~ 146 (382)
.+++||+|+||||++..++..+...+ ..++.+.+. +.+ +. ....+.+..+.. .
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~---~--- 75 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE---E--- 75 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh---h---
Confidence 68999999999999999888764332 222323221 100 00 011111111111 1
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
.+++.+|+|||++.++.+....|.+.+.. ....+|+++
T Consensus 76 ------~~~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tg 113 (190)
T PRK04296 76 ------GEKIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYG 113 (190)
T ss_pred ------CCCCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEe
Confidence 12567999999999987755556666543 334456665
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.4e-05 Score=59.87 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=36.6
Q ss_pred CcEEEEEeCCCCCCH---HHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~---~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
.+.+||+||+-..-. -..+.+++++++.|+.+.+|+|+... ++.|..+++
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~---p~~l~e~AD 147 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA---PKELIEAAD 147 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 788999999866521 23567889999999999999999764 334444444
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.8e-05 Score=61.79 Aligned_cols=26 Identities=42% Similarity=0.678 Sum_probs=23.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..|++|++|.||+||||++..++...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 45789999999999999999999765
|
|
| >COG3899 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0024 Score=66.13 Aligned_cols=107 Identities=15% Similarity=0.120 Sum_probs=74.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcC--Cc--eEEEEeecCccccchhhhcc--cceEEecCCCHHHHHHHHHHHHH
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYS--KV--TRFFFICNYISRIIEPLASR--CAKFRFKPLSEEVMSSRVLHICN 228 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~--~~--~~~Il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~ 228 (382)
++-|+|+|+++..++...+.|..+|..-+ .. ..+..+.+....+....++. ...+.+.|++..+....+...+.
T Consensus 154 ~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 154 HPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred CCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 46799999999999999888888887654 00 01111111112222222332 34899999999999999988775
Q ss_pred HhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016800 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (382)
Q Consensus 229 ~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~ 262 (382)
. ......+..+.+.+.+.|||--+...++.+..
T Consensus 234 ~-~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 234 C-TKLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred C-cccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 4 23467788999999999999988888876654
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.3e-05 Score=73.57 Aligned_cols=109 Identities=19% Similarity=0.211 Sum_probs=60.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH------------------------HHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT------------------------FAA 139 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------~~~ 139 (382)
..+|+|+|||||||++..+...+..........+.+-++.......+.+.+.. +..
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 38999999999999999988776321110112233444433333333332221 110
Q ss_pred hhhcCCC-CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 140 VAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 140 ~~~~~~~-~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
....... .......-...+|||||+..++......|++.+ ++.+++|++++..
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~~ 302 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDRD 302 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecchh
Confidence 0000000 000000013469999999999888777777765 5678899998753
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00015 Score=59.34 Aligned_cols=23 Identities=48% Similarity=0.845 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||+|+|||+++..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.7e-05 Score=62.54 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=54.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC-----------CCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-----------GYPC 153 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~~ 153 (382)
++|.||+|+||||++-.+|..+... .....++..+....-..++++..-+.+. .......... ....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHHHHHHHHhh
Confidence 7999999999999999999887533 2222233333222112222222111110 0000000000 0001
Q ss_pred CCcEEEEEeCCCCCCHH--HHHHHHHHHHhc-CCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSMTED--AQNALRRTMETY-SKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~--~~~~Ll~~le~~-~~~~~~Il~~~~~ 195 (382)
.++.+|+||=+.+.+.+ ..+.+.++++.. +..+.+|+.++..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 14579999998877643 455666666654 4455566655443
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0022 Score=59.92 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=42.7
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCCC--C-cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETANC--P-HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~--~-~lll~Gp~G~GKt~la~~la~~l 106 (382)
-|....+++|++.....+...+..... + ...|+||+|+|||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 366678999999999999999875433 2 27999999999999999999876
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00028 Score=74.52 Aligned_cols=152 Identities=14% Similarity=0.215 Sum_probs=94.8
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcC--CC----
Q 016800 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQ---- 146 (382)
Q Consensus 73 l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~---- 146 (382)
+.++++-++ .+++.|.||+|||+++.++|+.. +...+.+|.++.... .+. |....+.. ++
T Consensus 1536 VlRAmqv~k--pilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTdL---~DL---fGsd~Pve~~Gef~w~ 1601 (4600)
T COG5271 1536 VLRAMQVGK--PILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTDL---CDL---FGSDLPVEEGGEFRWM 1601 (4600)
T ss_pred HHHHHhcCC--ceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccchH---HHH---hCCCCCcccCceeEec
Confidence 333444443 49999999999999999999987 345666766542111 010 10000000 00
Q ss_pred ---CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc--------------CCceEEEEeecC------ccccchhhh
Q 016800 147 ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNY------ISRIIEPLA 203 (382)
Q Consensus 147 ---~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~--------------~~~~~~Il~~~~------~~~l~~~l~ 203 (382)
.... -.+..-|++||+...+....+.|-..++.. ++++++..+-|+ ...+++.+.
T Consensus 1602 dapfL~a--mr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~ 1679 (4600)
T COG5271 1602 DAPFLHA--MRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFL 1679 (4600)
T ss_pred ccHHHHH--hhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHh
Confidence 0000 014458999999999888877777766632 245544444443 234899999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 244 (382)
.|+.++.+..++.+++..+.... -.++.++..-.++.
T Consensus 1680 nRFsvV~~d~lt~dDi~~Ia~~~----yp~v~~d~~~kiik 1716 (4600)
T COG5271 1680 NRFSVVKMDGLTTDDITHIANKM----YPQVNEDWRLKIIK 1716 (4600)
T ss_pred hhhheEEecccccchHHHHHHhh----CCccChHHHHHHHH
Confidence 99999999999999998886433 23456666544443
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00018 Score=72.98 Aligned_cols=121 Identities=19% Similarity=0.187 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH-------HHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-------KIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~ 138 (382)
.+...+.+...... +..+++|+||||||++++++...+...+. ... +.+-++.......+.+ .+..+.
T Consensus 325 ~~~Q~~Ai~~~~~~---~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~-v~l~ApTg~AA~~L~e~~g~~a~Tih~lL 399 (720)
T TIGR01448 325 SEEQKQALDTAIQH---KVVILTGGPGTGKTTITRAIIELAEELGG-LLP-VGLAAPTGRAAKRLGEVTGLTASTIHRLL 399 (720)
T ss_pred CHHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHHHHHcCC-Cce-EEEEeCchHHHHHHHHhcCCccccHHHHh
Confidence 44555555554422 25899999999999999999887642210 012 2233333222222221 111222
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
...................+|||||+..++......|++.+ +..+++|++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~ 452 (720)
T TIGR01448 400 GYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDT 452 (720)
T ss_pred hccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECcc
Confidence 11110000000000124679999999999988777776654 456789999864
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.4e-05 Score=69.26 Aligned_cols=93 Identities=26% Similarity=0.267 Sum_probs=51.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh--cCCCCCCCceEEeecCCCcchHHHHHHHHHHH----------Hhh-hcCCCCCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVVRTKIKTFA----------AVA-VGSGQRRGGY 151 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~-~~~~~~~~~~ 151 (382)
+++.|.||||||.+|..+++.+ ..... ...++..|.. ....++..+.... ... ..........
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~-~~~~l~~n~~---l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGK-KVLYLCGNHP---LRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDK 79 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCC-ceEEEEecch---HHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccc
Confidence 7999999999999999999998 22221 1222323322 1222232222211 000 0000000011
Q ss_pred CCCCcEEEEEeCCCCCCHH--------HHHHHHHHHHh
Q 016800 152 PCPPYKIIILDEADSMTED--------AQNALRRTMET 181 (382)
Q Consensus 152 ~~~~~~vliiDe~d~l~~~--------~~~~Ll~~le~ 181 (382)
....+.+|||||+|++... ..+.|..++..
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 2237789999999999872 24677777776
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0023 Score=55.49 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=46.0
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHh-cCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMET-YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~-~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 224 (382)
.+.+||+||+..-. -..+.+..++-. .+-++.+|+.+.....+++.+|+-+..+-+-+.+..++..++.
T Consensus 98 ~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~ 167 (241)
T PF04665_consen 98 PRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYR 167 (241)
T ss_pred CCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHH
Confidence 46799999986421 122345555543 3446778888888899999999888854433567777665553
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00034 Score=65.34 Aligned_cols=107 Identities=13% Similarity=0.200 Sum_probs=55.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceEEeecCCCcchHHHHHHHHHHHHhh---hcCCCCCCC-----CCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSGQRRGG-----YPC 153 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~-----~~~ 153 (382)
++|+||+|+||||++..+|..+... ......++..++.......+ +..+.... ......... ...
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 8999999999999999999876321 11122233333321111112 22222210 000000000 011
Q ss_pred CCcEEEEEeCCCCCCHHH--HHHHHHHHHhc--CCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSMTEDA--QNALRRTMETY--SKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~~~--~~~Ll~~le~~--~~~~~~Il~~~~~ 195 (382)
.++.+|+||.+++.+.+. ...+.+.++.. +..+.+|+.++..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 367899999999987543 35666666643 2245566655443
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=70.56 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC--CCceEEeecCCCcchHHHHHHHHHH--------
Q 016800 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY--KSRVLELNASDDRGINVVRTKIKTF-------- 137 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~-------- 137 (382)
..+..+...+.+ +..+|+|+|||||||++..+...+...... ... +.+-++.......+.+.+...
T Consensus 149 ~Qk~A~~~al~~---~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~-I~l~APTGkAA~rL~e~~~~~~~~l~~~~ 224 (586)
T TIGR01447 149 WQKVAVALALKS---NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLR-IALAAPTGKAAARLAESLRKAVKNLAAAE 224 (586)
T ss_pred HHHHHHHHHhhC---CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCc-EEEECCcHHHHHHHHHHHHhhhcccccch
Confidence 333344444442 248999999999999999988776422110 112 233343332223333322211
Q ss_pred ----------------HHhhhcCCCCCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 138 ----------------AAVAVGSGQRRG-GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 138 ----------------~~~~~~~~~~~~-~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
............ ....-+..+|||||+..++......|++.+ +..+++|++++.
T Consensus 225 ~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 225 ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 000000000000 000114579999999999988777766654 567889999875
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00041 Score=57.72 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=46.1
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCceEEEEeecCc--cccchhhhcccc--eEEecCCCHHHHHHHHHHHH
Q 016800 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNYI--SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHIC 227 (382)
Q Consensus 155 ~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~ 227 (382)
+..++++||+..+ .....+.+...++. . ..+|++++.. ....+.|.++.. ++.+.+-+.+++...+.++.
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~-~--~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDS-E--KPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhC-C--CeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 5679999997654 33445666666643 2 3466666653 245667777654 78888888888877776543
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00055 Score=56.14 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=34.7
Q ss_pred CcEEEEEeCCCC------CCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADS------MTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~------l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
.+.+||+||+-. ++. +.++.+|+..|+.+-+|+|+... ++.|...++
T Consensus 97 ~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 97 ELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred CCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 788999999863 333 46778889999999999998754 334554444
|
Alternate name: corrinoid adenosyltransferase. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=58.87 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999876
|
... |
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=4e-05 Score=65.63 Aligned_cols=24 Identities=46% Similarity=0.780 Sum_probs=20.3
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHH
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~ 104 (382)
+.|+ ++|||+||+|||++|+.++.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 3344 99999999999999998864
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00024 Score=58.92 Aligned_cols=28 Identities=39% Similarity=0.585 Sum_probs=24.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+|-++|+|+||+||||+++.+++.+-..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 3558999999999999999999998543
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00035 Score=66.41 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=56.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCCCcchHHHHHHHHHHHHh---hhcCCCCCCC-----CCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRRGG-----YPCP 154 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~-----~~~~ 154 (382)
.++|.||+|+||||++..++..+. ... ...+..++....+. .. .+.+..+... .......... ....
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~-~a-~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRI-GA-VEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHH-HH-HHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 389999999999999999988763 121 13344444433211 11 1112221110 0000000000 0012
Q ss_pred CcEEEEEeCCCCCCH--HHHHHHHHHHHh--cCCceEEEEeecCcc
Q 016800 155 PYKIIILDEADSMTE--DAQNALRRTMET--YSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d~l~~--~~~~~Ll~~le~--~~~~~~~Il~~~~~~ 196 (382)
++.+||||.+...+. ...+.|..+++. .+..+.+|+.++...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 568999999877643 445677777772 233445566555433
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00041 Score=57.96 Aligned_cols=43 Identities=35% Similarity=0.505 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 65 HQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.|.+++..+.+.+... ..++++|.+|+|+|||-++..++..+.
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 4677788888888776 556799999999999999998777764
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00051 Score=58.15 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=65.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
++|.|+.|+|||++.+.|....+... +...+ ..+... .+. +.-++.+||+
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~--------~~~~~--~kd~~~-~l~-------------------~~~iveldEl 104 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS--------INDFD--DKDFLE-QLQ-------------------GKWIVELDEL 104 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc--------cccCC--CcHHHH-HHH-------------------HhHheeHHHH
Confidence 79999999999999999866532211 11111 112221 121 2248999999
Q ss_pred CCCCHHHHHHHHHHHH---------------hcCCceEEEEeecCccccc-hhhhcccceEEecC
Q 016800 165 DSMTEDAQNALRRTME---------------TYSKVTRFFFICNYISRII-EPLASRCAKFRFKP 213 (382)
Q Consensus 165 d~l~~~~~~~Ll~~le---------------~~~~~~~~Il~~~~~~~l~-~~l~sr~~~i~~~~ 213 (382)
+.+.+...+.|..++- +.+..++||.+||..+-+. ++=-+|+..+.+..
T Consensus 105 ~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 105 DGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 9999888888887774 2345677888888866443 34456777777766
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00059 Score=57.25 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999987
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0018 Score=58.95 Aligned_cols=47 Identities=21% Similarity=0.086 Sum_probs=37.7
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHhcCCCHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLHICNEEGL---NLDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~s~gdlr~a~ 254 (382)
.+++++++.+|++.++.......-+ ..++...+.+.-.++||++.+.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 7899999999999999987765322 2456678888888899999865
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >COG2842 Uncharacterized ATPase, putative transposase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00057 Score=60.13 Aligned_cols=191 Identities=21% Similarity=0.162 Sum_probs=98.0
Q ss_pred CCCcccCcHHHHHHHH---HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLT---NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~---~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 135 (382)
...++++-+...+.+. -.-+.+. ...+||.+|.|||+.++.++... ...+.+.++...........+.
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHH
Confidence 4456776555433332 2222222 37999999999999999988764 2222232222111111000000
Q ss_pred HHHHhhhcCCC-----CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc--------cccchhh
Q 016800 136 TFAAVAVGSGQ-----RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRIIEPL 202 (382)
Q Consensus 136 ~~~~~~~~~~~-----~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~--------~~l~~~l 202 (382)
........... +.........+++++||++.|+..+.+.|.+.-++..- -+++++++. ......+
T Consensus 141 ~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi--~~vLvG~prL~~~l~~~~~~~~rl 218 (297)
T COG2842 141 AAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGI--GVVLVGMPRLFKVLRRPEDELSRL 218 (297)
T ss_pred HHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCc--eEEEecChHHHhccccchHHHHHH
Confidence 00000000000 00000012567999999999999999999999887654 356666543 1122233
Q ss_pred hcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 016800 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 203 ~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~ 264 (382)
.||.. .+....++..+...+...... ...+..+..+....+|++|.+-..+......+
T Consensus 219 ~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a 279 (297)
T COG2842 219 YSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVGTA 279 (297)
T ss_pred HHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhhhhhh
Confidence 33332 111122222333333322111 14566677777888999998877776555443
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=56.16 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+++++||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5899999999999999988888754
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=58.90 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=31.4
Q ss_pred CcEEEEEeCCCCCCHH---HHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTED---AQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~---~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
.+.+||+||+-..-.- ..+.++.+|+..|+.+-+|+|+...
T Consensus 115 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 115 SYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred CCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 7899999998544211 2456888889999999999999754
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00029 Score=59.61 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
...+||+||++++++.....+ +-....++.+|++++.
T Consensus 119 ~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 119 DNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGDP 155 (205)
T ss_dssp -SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE--
T ss_pred cceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecCc
Confidence 357999999999998765544 4455677889999864
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0003 Score=65.83 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
|..+...+.+.+......++++.||.|||||++++++...+.
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 445555555556555544599999999999999999998874
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.021 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
++|+|++|+||||++..++..+..
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 899999999999999999988753
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0017 Score=59.96 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=62.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh---cCCCCCCC-----CCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV---GSGQRRGG-----YPCP 154 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~-----~~~~ 154 (382)
.+.|.||.|+||||+.--+|.... ........++..+.-..-.. +.++.++.... ........ ....
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~----EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAV----EQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHH----HHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 389999999999988888887764 22222233344333221111 22222221100 00000000 0011
Q ss_pred CcEEEEEeCCCCCCH--HHHHHHHHHHHhc-CCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADSMTE--DAQNALRRTMETY-SKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
.+++|+||=+.+=.. .....|..++... +-.+.+++.++....-++.+..++.
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhc
Confidence 567999998876543 3345566666543 4456677777766665666665554
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00055 Score=69.84 Aligned_cols=116 Identities=15% Similarity=0.197 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH-------HHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-------KIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~ 138 (382)
.++....+...+...+ ..+|.|++|||||++++++...+...+ ..+..+ ++.......+.+ .+..+.
T Consensus 354 s~~Q~~Av~~i~~s~~--~~il~G~aGTGKTtll~~i~~~~~~~g---~~V~~~-ApTg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 354 SEEQYEAVRHVTGSGD--IAVVVGRAGTGKSTMLKAAREAWEAAG---YRVIGA-ALSGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CHHHHHHHHHHhcCCC--EEEEEecCCCCHHHHHHHHHHHHHhCC---CeEEEE-eCcHHHHHHHHhccCCceeeHHHHH
Confidence 4555566655554432 489999999999999999987663322 233333 222111111111 011111
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.. ... ......+..+|||||+..++......|++.... ..+++||+++.
T Consensus 428 ~~-~~~----~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD~ 476 (744)
T TIGR02768 428 YA-WAN----GRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGDP 476 (744)
T ss_pred hh-hcc----CcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCh
Confidence 00 000 000112668999999999998887777776554 35678888864
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00086 Score=60.41 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=64.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCC---CCCCcEEEEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY---PCPPYKIIIL 161 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vlii 161 (382)
+.+||+-|.|||.+.-.+...+-.+......+.. ....+-+.+..+. +........ -.++.+|+.+
T Consensus 68 lYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~-------FM~~vH~~l~~l~----g~~dpl~~iA~~~~~~~~vLCf 136 (367)
T COG1485 68 LYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHR-------FMARVHQRLHTLQ----GQTDPLPPIADELAAETRVLCF 136 (367)
T ss_pred EEEECCCCccHHHHHHHHHhhCCccccccccHHH-------HHHHHHHHHHHHc----CCCCccHHHHHHHHhcCCEEEe
Confidence 9999999999999999998887332211111100 0011111111111 000000000 0126789999
Q ss_pred eCCCCCCHHHHHHHHHHHHhc-CCceEEEEeecCc-ccc-------------chhhhcccceEEecCC
Q 016800 162 DEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-SRI-------------IEPLASRCAKFRFKPL 214 (382)
Q Consensus 162 De~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~l-------------~~~l~sr~~~i~~~~~ 214 (382)
||++--.....=.|-.+++.. ...+.+|.|+|.. +.+ .+.|.++|.++.++.+
T Consensus 137 DEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 137 DEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred eeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 999876655555555666653 4466677777643 222 2566788887766555
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=60.15 Aligned_cols=23 Identities=48% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
|
|
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.||||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999986
|
|
| >KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00019 Score=77.34 Aligned_cols=147 Identities=22% Similarity=0.331 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
..+..+...++. .+||.||.|+|||.++..+++.. ..++++++.... .+.++.+..+.....+......+
T Consensus 430 a~~~~a~~~~~~-pillqG~tssGKtsii~~la~~~------g~~~vrinnheh---td~qeyig~y~~~~~g~l~freg 499 (1856)
T KOG1808|consen 430 ADLARAISSGKF-PILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEH---TDLQEYIGTYVADDNGDLVFREG 499 (1856)
T ss_pred HHHHHHHhcCCC-CeEEecCcCcCchhHHHHHHHHh------ccCceehhcccc---chHHHHHHhhhcCCCCCeeeehh
Confidence 444545555554 49999999999999999999997 456666665443 23345555333222111110000
Q ss_pred CC---CCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----CCceE---------EEEeecCc------cccchhhhcccc
Q 016800 151 YP---CPPYKIIILDEADSMTEDAQNALRRTMETY-----SKVTR---------FFFICNYI------SRIIEPLASRCA 207 (382)
Q Consensus 151 ~~---~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----~~~~~---------~Il~~~~~------~~l~~~l~sr~~ 207 (382)
.. ..+...+|+||++..+.+..++|.+++++. ++..+ ++.+-|.+ ..+...+++|+.
T Consensus 500 ~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~ 579 (1856)
T KOG1808|consen 500 VLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFI 579 (1856)
T ss_pred HHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccch
Confidence 00 014569999999999999999999999862 12222 12222332 125577888888
Q ss_pred eEEecCCCHHHHHHHHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLHIC 227 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~ 227 (382)
.++|...+++++..++..++
T Consensus 580 e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 580 ELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhhcCchhhhhhhcccc
Confidence 99999999998888876544
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.7e-05 Score=57.37 Aligned_cols=22 Identities=45% Similarity=0.881 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
|
... |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00062 Score=61.03 Aligned_cols=52 Identities=25% Similarity=0.407 Sum_probs=36.7
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.+++++.-.....+.+..++... ...+++|.||+|+||||++.++...+..
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccc
Confidence 346777765555555666555554 2225999999999999999999998743
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0033 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+|++|+||||+|+.+++.+
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00074 Score=55.43 Aligned_cols=59 Identities=10% Similarity=0.179 Sum_probs=41.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecC
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~ 213 (382)
.+.+++-||.. ++.++....++.++++....-.-|+++++...+..+++.|+..++-..
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Gr 214 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGR 214 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCE
Confidence 67799999974 789999999999999875433334444445566777777776554433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=68.55 Aligned_cols=189 Identities=14% Similarity=0.049 Sum_probs=103.8
Q ss_pred cCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCCCcchHHH-HHHHHHHHHhh
Q 016800 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVV-RTKIKTFAAVA 141 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 141 (382)
+|++..++.+.+.+-......+-+||..|+||||+++.+.+... -...++. ++.+.-+.......+ ...+..+....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~-~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDG-VIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCce-EEEEEEcccccHHhHHHHHHHHhccCC
Confidence 99999999999888777666689999999999999999988763 1111111 111111211122221 12222111100
Q ss_pred hcCCCC--------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc----CCceEEEEeecCccccchhhhcccceE
Q 016800 142 VGSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY----SKVTRFFFICNYISRIIEPLASRCAKF 209 (382)
Q Consensus 142 ~~~~~~--------~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~sr~~~i 209 (382)
...... ...+-.+++-++++||+-.=- . ++.+.-+ .....+++||....- -...-.+...+
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--d----w~~I~~~~p~~~~g~KvvlTTRs~~V-~~~~m~~~~~~ 312 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--D----WDKIGVPFPSRENGSKVVLTTRSEEV-CGRAMGVDYPI 312 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccc--c----HHhcCCCCCCccCCeEEEEEeccHhh-hhccccCCccc
Confidence 000000 000112367799999975421 1 2333322 223778888865322 11111124467
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 210 RFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
+...++.++.-..+.+.+-..... --++.+..+++.|+|-|- |++.+-..-
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPL-Al~viG~~m 366 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPL-ALNVLGGLL 366 (889)
T ss_pred cccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHH-HHHHHHHHh
Confidence 777788888888887766332111 125677888899998554 566655443
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00072 Score=56.86 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||||+|||+++..++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999888764
|
A related protein is found in archaea. |
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0023 Score=65.10 Aligned_cols=192 Identities=17% Similarity=0.167 Sum_probs=112.9
Q ss_pred CCcccCc-HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecC----CCcchHHH
Q 016800 60 VKDVAHQ-EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNAS----DDRGINVV 130 (382)
Q Consensus 60 ~~~~~g~-~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~----~~~~~~~~ 130 (382)
++-++|+ ++..+.+.+.+......|-+|.|.||+|||.++..+++.+..-+. ....++.++.. .......+
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5667786 666666666666555567999999999999999999998753322 11223333321 12223445
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEeecCc-----cc
Q 016800 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNYI-----SR 197 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~~~~~-----~~ 197 (382)
...++......... ++.-|++|||++.+.. ++.|.|...+.. .. ..+|-+|+.. -.
T Consensus 265 E~rlk~l~k~v~~~---------~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r-g~-l~~IGatT~e~Y~k~ie 333 (898)
T KOG1051|consen 265 EERLKELLKEVESG---------GGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR-GG-LWCIGATTLETYRKCIE 333 (898)
T ss_pred HHHHHHHHHHHhcC---------CCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc-CC-eEEEecccHHHHHHHHh
Confidence 55555544332212 2667999999998842 334444444433 22 5666665421 12
Q ss_pred cchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhc------CCCHHHHHHHHHHHHH
Q 016800 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSIS------QGDLRRAITYLQGAAR 262 (382)
Q Consensus 198 l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s------~gdlr~a~~~l~~~~~ 262 (382)
-.|++-+|++.+.++-|+.++...+|...... .|..+++.++...+..+ ..-+..++++.+.++.
T Consensus 334 kdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a 408 (898)
T KOG1051|consen 334 KDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAA 408 (898)
T ss_pred hCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHH
Confidence 46889999998889889887766666554443 34455555444433332 2334455555555554
|
|
| >PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0003 Score=64.17 Aligned_cols=130 Identities=22% Similarity=0.295 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCC
Q 016800 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (382)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 149 (382)
..+..+++.-...+ ++|+|||+||||.++..+.+-+. ..++.+-.+... |-..+..
T Consensus 250 ~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~------GkViSf~Ns~Sh-----------FWLqPL~------ 306 (432)
T PF00519_consen 250 IALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK------GKVISFVNSKSH-----------FWLQPLA------ 306 (432)
T ss_dssp HHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHT------SEEE-GGGTTSC-----------GGGGGGC------
T ss_pred HHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhC------CEEEEecCCCCc-----------ccccchh------
Confidence 45566666544445 99999999999999999999873 344443222111 1111111
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHH----HHHHHHHhcC-------------CceEEEEeecCc---cccchhhhcccceE
Q 016800 150 GYPCPPYKIIILDEADSMTEDAQN----ALRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAKF 209 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~~~~~----~Ll~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i 209 (382)
+.++-+|||+.. ...+ -|+..++..+ .-..+++++|.. +.-..-|.||...+
T Consensus 307 -----d~Ki~llDDAT~---~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f 378 (432)
T PF00519_consen 307 -----DAKIALLDDATY---PCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCF 378 (432)
T ss_dssp -----T-SSEEEEEE-H---HHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEE
T ss_pred -----cCcEEEEcCCcc---cHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEE
Confidence 557999999743 3332 3455555322 011266777642 33467889999988
Q ss_pred EecCC-------------CHHHHHHHHHHHHHHhC
Q 016800 210 RFKPL-------------SEEVMSSRVLHICNEEG 231 (382)
Q Consensus 210 ~~~~~-------------~~~~~~~~l~~~~~~~~ 231 (382)
+|+.+ +....+.+.++...+.+
T Consensus 379 ~F~n~~P~d~~G~P~y~ltd~~WksFF~rlw~~Ld 413 (432)
T PF00519_consen 379 EFPNPFPLDENGNPVYELTDANWKSFFRRLWSQLD 413 (432)
T ss_dssp E--S-S-BSTTSSBSS---HHHHHHHHHHHTCCCT
T ss_pred EcCCccccCCCCCeeEEeccChHHHHHHHHHHhcC
Confidence 88653 34566666666554433
|
The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0022 Score=61.68 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||++..|+..+
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998865
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=60.68 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||+|+||||++..++..+.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 389999999999999999998875
|
|
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0021 Score=54.01 Aligned_cols=25 Identities=40% Similarity=0.784 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..+++.||||+||||+++.+++.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999998763
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=67.73 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHH-------HHHHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV-------RTKIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~ 138 (382)
.++....+...+.... ..++.|++||||||+.+.+...+...+ ..++-+-+. ......+ ...+..+.
T Consensus 348 s~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~G---~~V~~~ApT-GkAA~~L~e~tGi~a~TI~sll 421 (988)
T PRK13889 348 SGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAAG---YEVRGAALS-GIAAENLEGGSGIASRTIASLE 421 (988)
T ss_pred CHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEecCc-HHHHHHHhhccCcchhhHHHHH
Confidence 4455555655554332 478999999999999988776553221 233333221 1111111 11122221
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.. +..+ .....+..+|||||+..++......|++..+. ..+++|++++.
T Consensus 422 ~~-~~~~----~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD~ 470 (988)
T PRK13889 422 HG-WGQG----RDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDP 470 (988)
T ss_pred hh-hccc----ccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECCH
Confidence 10 0000 00112557999999999998888888777654 35678888864
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=55.22 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
+..++||||+|.+.. .....+..++...+....+++.+..+
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 456999999999986 44445555555443334444444333
|
|
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00081 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999975
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=58.54 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=26.9
Q ss_pred HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 74 ~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
....+.++..+++|.||+|+||||+.+.++..+
T Consensus 103 ~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 103 PYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred HHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 333455555689999999999999999999876
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0005 Score=56.69 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+++.||+|+||||+|+.+++.+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999999998443
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00083 Score=58.99 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+...++|.||+|+|||++++.+++.+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 3335999999999999999999988743
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.047 Score=51.73 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=63.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh---hcCCCCCCC-----------
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA---VGSGQRRGG----------- 150 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~----------- 150 (382)
++|.|++|+||||++..+|..+...+ ..+.-+++...+. .. .+.++.+.... .........
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G---~kV~lV~~D~~R~-aA-~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG---FKPCLVCADTFRA-GA-FDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcCcccch-hH-HHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999998774332 2333343332221 11 11222222110 000000000
Q ss_pred CCCCCcEEEEEeCCCCCCHH--HHHHHHHHHHhc-CCceEEEEeecCc---cccchhhhccc--ceEEecCCCHH
Q 016800 151 YPCPPYKIIILDEADSMTED--AQNALRRTMETY-SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEE 217 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~~--~~~~Ll~~le~~-~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~ 217 (382)
....++.+||||=+.++..+ ....+.++.+.. |..+.+|+-+... ......+.... .-+-+..++..
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECccCC
Confidence 00125789999999888653 345555555433 3344455543222 12334444332 24555566553
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00091 Score=62.01 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||++..++..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999875
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0031 Score=57.20 Aligned_cols=49 Identities=24% Similarity=0.290 Sum_probs=35.4
Q ss_pred CCCCCccc--C--cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 57 PKQVKDVA--H--QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 57 p~~~~~~~--g--~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.++++++ | .+.....|..+++.+. +++++|++|+||||+++++...+.
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~~--~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLARK--NILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHhh
Confidence 34555554 2 2445566777776433 699999999999999999998873
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=61.60 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=86.9
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcC-----------CCC-cEEEeCCCCCCHHHHHHHHHHHhcC---CCCCCC
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----------NCP-HMLFYGPPGTGKTTTALAIAHQLFG---PELYKS 114 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~lll~Gp~G~GKt~la~~la~~l~~---~~~~~~ 114 (382)
.+.....| .+.||+.+++.+.-++-.| +.. ++|+.|.|.+.|+.+.+.+.+..-- ....+.
T Consensus 294 lLa~SLAP----SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGS 369 (818)
T KOG0479|consen 294 LLARSLAP----SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGS 369 (818)
T ss_pred HHhhccCc----ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCC
Confidence 34444556 4669999999887766433 111 3999999999999999998876410 000000
Q ss_pred ceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------
Q 016800 115 RVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------- 183 (382)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------- 183 (382)
.=+.+.+.-....+.-...++. .+. ..+.+.||.|||+|+|+.-..-++.+.||...
T Consensus 370 SGVGLTAAVTtD~eTGERRLEA---GAM---------VLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHas 437 (818)
T KOG0479|consen 370 SGVGLTAAVTTDQETGERRLEA---GAM---------VLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHAS 437 (818)
T ss_pred CCccceeEEeeccccchhhhhc---Cce---------EEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhh
Confidence 0000111100001111111211 111 11277899999999999888899999998542
Q ss_pred --CceEEEEeecCcc-------------ccchhhhcccceE
Q 016800 184 --KVTRFFFICNYIS-------------RIIEPLASRCAKF 209 (382)
Q Consensus 184 --~~~~~Il~~~~~~-------------~l~~~l~sr~~~i 209 (382)
..|.++.++|+.. .+.+.+.||+..+
T Consensus 438 LNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLl 478 (818)
T KOG0479|consen 438 LNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLL 478 (818)
T ss_pred hccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEE
Confidence 4566777777542 2778999999843
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0018 Score=60.56 Aligned_cols=22 Identities=41% Similarity=0.783 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||||++..++...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999764
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=52.34 Aligned_cols=96 Identities=19% Similarity=0.252 Sum_probs=55.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc-----------------chHHHHHHHHHHHHhhhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-----------------GINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~ 146 (382)
.+.|.||.|+||||+++.++..+. +. ..-+.++..+.. +.... ..+. +... ..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~-~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~-~r~~-l~~~-l~--- 96 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLK-PT---SGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQR-QRVA-LARA-LL--- 96 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CC---ccEEEECCEEcccCCHHHHHhceEEEeeCCHHHH-HHHH-HHHH-Hh---
Confidence 489999999999999999987652 11 111223221100 00000 0010 1111 00
Q ss_pred CCCCCCCCCcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 147 RRGGYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
.+.+++++||.. .++......+.+.+.+... ...+++++....
T Consensus 97 -------~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 97 -------LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred -------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 155799999987 6778888888888876433 245677766543
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.067 Score=50.89 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=22.0
Q ss_pred Cc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
|. ++|.|++|+||||++..+|..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 44 89999999999999999998863
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0035 Score=57.60 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..|...++.+. +++++|++|+||||+++++...+.
T Consensus 151 ~~L~~~v~~~~--nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 151 EFLEHAVISKK--NIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHHHHcCC--cEEEECCCCCCHHHHHHHHHhhCC
Confidence 34444444433 699999999999999999998873
|
|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00042 Score=60.59 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999987
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.003 Score=55.27 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++++|+||+|||+++..++...
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 8999999999999999998764
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0041 Score=54.98 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+|+||+||||+|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.072 Score=50.72 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=22.3
Q ss_pred Cc-EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 83 PH-MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 83 ~~-lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
|. ++|+|++|+||||++..+|..+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 44 899999999999999999987743
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0035 Score=55.77 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=38.2
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+..++++-..+...+.|..++.... ..++|.||+|+||||+++++...+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3456666556777777877776543 2589999999999999999988874
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0059 Score=55.58 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|+||+||||+++.+++.+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 7899999999999999999986
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0016 Score=61.74 Aligned_cols=54 Identities=28% Similarity=0.321 Sum_probs=43.3
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
...+++++...+.....+.+++..... -+|++||.|+||||+..++.+.++.+.
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~p~G-liLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNRPQG-LILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhCCCe-EEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 355677777778888888888776542 389999999999999999999997654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=52.39 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=55.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc--h-HHHHHH-----------HHH--HHHhhhcCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--I-NVVRTK-----------IKT--FAAVAVGSGQR 147 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-----------l~~--~~~~~~~~~~~ 147 (382)
.+.|.||+|+||||+.+.++.... +. ..-+.++..+... . +..+.. .+. ++.. ..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~-~~---~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lara-l~---- 98 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYK-PD---SGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARA-LA---- 98 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CC---CeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHH-Hh----
Confidence 589999999999999999987642 21 1112222211100 0 000000 000 0100 11
Q ss_pred CCCCCCCCcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 148 RGGYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
.+++++++||.. .++......+.+.+.+.. ....+|+++.+..
T Consensus 99 ------~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 99 ------RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred ------cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 166899999976 578888888888887653 2345666666543
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00044 Score=48.66 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=18.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.||||+|||+++...+..+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367799999999977666666654
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00025 Score=60.11 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=35.9
Q ss_pred CcEEEEEeCCCCCCHH-HH-----HHHHHHHHh-cCCceEEEEeecCccccchhhhcccc-eEEecC
Q 016800 155 PYKIIILDEADSMTED-AQ-----NALRRTMET-YSKVTRFFFICNYISRIIEPLASRCA-KFRFKP 213 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~-----~~Ll~~le~-~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~ 213 (382)
...++||||++..-+. .. ....+.+.. .....-++++|..+..+.+.++..+. .+.+..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 3469999999976322 11 233355443 44567799999999999999998776 444443
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00056 Score=58.89 Aligned_cols=18 Identities=61% Similarity=1.180 Sum_probs=17.1
Q ss_pred EEEeCCCCCCHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAI 102 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~l 102 (382)
++|||+||+|||+++..+
T Consensus 6 ~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEECCCCCCHHHHHHhC
Confidence 899999999999999887
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0026 Score=66.74 Aligned_cols=116 Identities=13% Similarity=0.148 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH-------HHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-------KIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~ 138 (382)
.++....+...... ....++.|++||||||+++.+...+...+ ..++-+-+ .......+.+ .+..+.
T Consensus 383 s~eQ~~Av~~i~~~--~r~~~v~G~AGTGKTt~l~~~~~~~e~~G---~~V~g~Ap-TgkAA~~L~e~~Gi~a~TIas~l 456 (1102)
T PRK13826 383 SDEQKTAIEHVAGP--ARIAAVVGRAGAGKTTMMKAAREAWEAAG---YRVVGGAL-AGKAAEGLEKEAGIQSRTLSSWE 456 (1102)
T ss_pred CHHHHHHHHHHhcc--CCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEcC-cHHHHHHHHHhhCCCeeeHHHHH
Confidence 34444455444322 22489999999999999999887653222 23333322 2111111111 111111
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.. ... .........||||||+..++......|++.++. ..+++|++++.
T Consensus 457 l~-~~~----~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 457 LR-WNQ----GRDQLDNKTVFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred hh-hcc----CccCCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 00 000 001112567999999999999988888888864 34678888864
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0035 Score=53.74 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=32.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++++||||+|||+++..++...... ...++.++... .....+.+.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC-CCHHHHHHH
Confidence 8999999999999999998876433 24567777654 334444443
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.003 Score=56.23 Aligned_cols=94 Identities=21% Similarity=0.322 Sum_probs=48.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec-------C---CCcchHHHHHHHHHHHHhhhcCCCCCCCCC
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-------S---DDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 152 (382)
|-++++|-||+|||++++.|.+.+.... ..+..++. . +......++..+.........
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~---~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls--------- 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKG---KEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS--------- 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT-----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT---------
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcC---CEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc---------
Confidence 5689999999999999999999875422 22222221 1 122234455555554444433
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 016800 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 153 ~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
+..+||+|+..++ +...-.|..+-....-...+|.+
T Consensus 70 --~~~iVI~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~ 105 (270)
T PF08433_consen 70 --KDTIVILDDNNYI-KGMRYELYCLARAYGTTFCVIYC 105 (270)
T ss_dssp --T-SEEEE-S---S-HHHHHHHHHHHHHTT-EEEEEEE
T ss_pred --cCeEEEEeCCchH-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 4479999998766 45555666655554433333333
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0065 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.||+|+||||+++++...+
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 69999999999999999999876
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0038 Score=52.73 Aligned_cols=25 Identities=44% Similarity=0.681 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.+++.||||+||||+++.+++.+..
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988743
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0055 Score=49.16 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=54.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-------CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 156 (382)
.+.+.||+|+||||+++.++.... +.. .-+.++.. ..++-..-+-.+.... . .+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~-~~~---G~i~~~~~~~i~~~~~lS~G~~~rv~laral---~-----------~~p 89 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELE-PDE---GIVTWGSTVKIGYFEQLSGGEKMRLALAKLL---L-----------ENP 89 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC-CCc---eEEEECCeEEEEEEccCCHHHHHHHHHHHHH---h-----------cCC
Confidence 489999999999999999987652 211 11111110 0111111111111111 1 156
Q ss_pred EEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 157 KIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 157 ~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++||.. .++......+.+.+.+.. ..+++++....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~~ 128 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDRY 128 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCHH
Confidence 799999975 678888888888887752 34666666543
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.004 Score=48.41 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------------------CCCC
Q 016800 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET---------------------------------EDIS 332 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~---------------------------------~~~~ 332 (382)
|.++|++..++...+.+.++.|..+|.+|..++..+.+.++.. .+.+
T Consensus 2 F~L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~L~rElr~L~~l~~~~~~~~l~~~~~~~rIW~~Rq~l~~~Al~Rls 81 (125)
T PF14840_consen 2 FQLIDALLAGDAKRALRILQGLQAEGVEPPILLWALQRELRLLIQLKQALAQQPLQQLFKQLRIWQKRQPLYQQALQRLS 81 (125)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTT-CCHHHHHHHHHHHS-
T ss_pred CcHHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHhHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999887665554431 4677
Q ss_pred HHHHHHHHHHHHHHhhHhhcC--CChHHHHHHHHHHHH
Q 016800 333 DEQQARICKCLAEVDKCLVDG--ADEYLQLLDVASNVI 368 (382)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~g--~~~~l~l~~l~~~l~ 368 (382)
...+..++..++.+|..+|.+ .++...|+.+.+.+|
T Consensus 82 ~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~lc 119 (125)
T PF14840_consen 82 LQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLLC 119 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHc
Confidence 888999999999999999976 488889999988877
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0041 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.||+|+|||+++..++..+.
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999877766553
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0035 Score=53.91 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.++|+||.|+|||++.+.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 389999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.038 Score=51.98 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCC---CH-----HHHHHHHHHHHhcC----CceEEEEeecCc------cc--cchhhhccc---------
Q 016800 156 YKIIILDEADSM---TE-----DAQNALRRTMETYS----KVTRFFFICNYI------SR--IIEPLASRC--------- 206 (382)
Q Consensus 156 ~~vliiDe~d~l---~~-----~~~~~Ll~~le~~~----~~~~~Il~~~~~------~~--l~~~l~sr~--------- 206 (382)
.-+|+|||++.+ +. ..-+.|+.++++.. ++.-|++++++. .. -.++|.+|.
T Consensus 240 GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~ 319 (416)
T PF10923_consen 240 GLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDG 319 (416)
T ss_pred ceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccccccc
Confidence 359999999876 22 34578888887632 456677776431 11 245666553
Q ss_pred ------ceEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHhc
Q 016800 207 ------AKFRFKPLSEEVMSSRVLHICNEE------GLNLDAEALSTLSSIS 246 (382)
Q Consensus 207 ------~~i~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~s 246 (382)
.++.++|++.+++..++.++..-. ...++++.+..+++.+
T Consensus 320 ~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 320 FDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred ccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 368999999999998887765421 2346777776666544
|
Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins. |
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=54.40 Aligned_cols=24 Identities=46% Similarity=0.949 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||||+||||+++.+++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999873
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0036 Score=52.24 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=32.7
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 198 (382)
+++++++||.. .++......+.+.+.+......+|+++.+...+
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 67899999975 678888888888887654455577777765543
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0022 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++.+++..+.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 79999999999999999998874
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0046 Score=52.25 Aligned_cols=22 Identities=45% Similarity=0.847 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||||+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999986
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0032 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++++||+|+||+++.+.++...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 48999999999999999999865
|
|
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0065 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+++.|+.|+|||.+.+.++.-++..
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~ 55 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMN 55 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhC
Confidence 8999999999999999999877543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0052 Score=51.09 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=53.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec-------CCC-cchHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-------SDD-RGINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 155 (382)
.+.|.||.|+||||+++.++..+. +.. .-+.++. ... .+..+ +..+.- +..-. .+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~-p~~---G~i~~~g~~i~~~~q~~~LSgGq-~qrv~l-aral~-----------~~ 89 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI-PNG---DNDEWDGITPVYKPQYIDLSGGE-LQRVAI-AAALL-----------RN 89 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC-CCC---cEEEECCEEEEEEcccCCCCHHH-HHHHHH-HHHHh-----------cC
Confidence 489999999999999999987652 211 0111111 110 11111 111111 11111 15
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCc
Q 016800 156 YKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYI 195 (382)
Q Consensus 156 ~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~ 195 (382)
.+++++||.. .+.......+.+.+.+.. ....+|+++...
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 6799999976 667788888887776542 224466666654
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0068 Score=50.19 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=32.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+.+++++||.. .++......+.+++.+......+|+++.....
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 66899999975 67888888888888776544567777776544
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0084 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|+||+|||+++..++....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999988764
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00053 Score=59.75 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.....+..++.... -.+++||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344455555554432 37999999999999888888876
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0062 Score=56.83 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
..|-+.+..|-.+. ++++|+||+|||+++..++..+... ...++++...
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E 119 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE 119 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 34445555554443 8999999999999999999876432 1345556554
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0062 Score=56.50 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+..++... ...++|+||+|+||||+++++...+.
T Consensus 113 ~l~~~~~~~-~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 113 VLRELAERP-RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 344444332 23599999999999999999998874
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.011 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++|+||||+||||++..|++.+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999873
|
|
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0024 Score=52.45 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0058 Score=51.37 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
++....|...++.+. .++|.||+|+||||++++++..+
T Consensus 12 ~~~~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 12 PLQAAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 455566666666654 69999999999999999999876
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0062 Score=51.22 Aligned_cols=127 Identities=25% Similarity=0.313 Sum_probs=58.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe 163 (382)
-++|+||+|+|||.++-.+++... ..++..+... .+......++-.......+-++ +++||
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g------~pvI~~Driq------------~y~~l~v~Sgrp~~~el~~~~R-iyL~~ 63 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTG------APVISLDRIQ------------CYPELSVGSGRPTPSELKGTRR-IYLDD 63 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--------EEEEE-SGG------------G-GGGTTTTT---SGGGTT-EE-EES--
T ss_pred EEEEECCCCCChhHHHHHHHHHhC------CCEEEeccee------------cccccccccCCCCHHHHcccce-eeecc
Confidence 379999999999999999999983 3344333211 0111111111000000011334 67765
Q ss_pred CCC----CC-HHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc-------ceEEecCCCHHHHHHHHHHHHHH
Q 016800 164 ADS----MT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC-------AKFRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 164 ~d~----l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~-------~~i~~~~~~~~~~~~~l~~~~~~ 229 (382)
-.- ++ .++.+.|...+.+....--+|+-+-+.+.+..-..++. .+..++-++.+......++++++
T Consensus 64 r~l~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 64 RPLSDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp --GGG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 322 23 34556777788877766667777655444333333322 14555556666666666555544
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.009 Score=51.60 Aligned_cols=36 Identities=36% Similarity=0.636 Sum_probs=27.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
++++|+||+|||+++..++...... +..++.++...
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~~e~ 57 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYIDTEG 57 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCC
Confidence 8999999999999999999887433 24566666543
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.03 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.+++.|++|+|||++++.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 456999999999999999998875
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0022 Score=50.25 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.++|.|+.|+||||+++.+++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 38999999999999999999998543
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0076 Score=52.38 Aligned_cols=35 Identities=31% Similarity=0.604 Sum_probs=26.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++++||||+|||+++..++...... ...++.++..
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~---~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKN---GKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 7999999999999999999876432 2445555554
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0019 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+||||+++.+++.+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998863
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0054 Score=51.26 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=31.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.. .++......+.+.+.+... ...+|+++....
T Consensus 115 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 67899999976 6788888888888876533 345677776544
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.013 Score=54.07 Aligned_cols=49 Identities=31% Similarity=0.445 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
..|.+.+..|-.|. +|+-|.||.||||+...++..+.... +++++.+.+
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEE 130 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEE 130 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCc
Confidence 56677777776665 89999999999999999998874332 566666643
|
|
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0042 Score=52.12 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.||||+||||+++.+++.+.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999873
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0031 Score=54.31 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+||||||+.+-+-+.+
T Consensus 30 ~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 8999999999999999776654
|
|
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00071 Score=61.44 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=38.6
Q ss_pred CCC-cccCcHHHHHHHHHHHHcC------CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 59 QVK-DVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 59 ~~~-~~~g~~~~~~~l~~~l~~~------~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.|+ ++.|-++.+..|...++.. +...++|.||.|+|||+++..+.+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 344 8999999998887777543 12238999999999999999999887
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0027 Score=57.90 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=71.9
Q ss_pred CcccC-cHHHHHHHHHHHHc---C--CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHH
Q 016800 61 KDVAH-QEEVVRVLTNTLET---A--NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 61 ~~~~g-~~~~~~~l~~~l~~---~--~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
.++.+ .++....+.+++.. + .... ++++|+.|+|||+++..+.+.+ ++.... ...+ ........
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~~~~-----~~~~--~~~~~~~~- 118 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-GDYATT-----AVAS--LKMNEFQE- 118 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-Chhhcc-----CCcc--hhhhhccC-
Confidence 34443 45566667666532 2 2222 8999999999999998776554 332100 0000 00000000
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH--------------hcCCceEEEEeecCcccc-
Q 016800 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME--------------TYSKVTRFFFICNYISRI- 198 (382)
Q Consensus 134 l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le--------------~~~~~~~~Il~~~~~~~l- 198 (382)
..+.... ..+.++++++|++.-.....+.|..+.. +......+|+.+|....+
T Consensus 119 -~~f~~a~-----------l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~ 186 (304)
T TIGR01613 119 -HRFGLAR-----------LEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR 186 (304)
T ss_pred -CCchhhh-----------hcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC
Confidence 0000000 1167899999987533223344444442 112356688889876554
Q ss_pred --chhhhcccceEEecC
Q 016800 199 --IEPLASRCAKFRFKP 213 (382)
Q Consensus 199 --~~~l~sr~~~i~~~~ 213 (382)
...+.+|..++.|+.
T Consensus 187 ~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 187 GFDGGIKRRLRIIPFTK 203 (304)
T ss_pred CCChhheeeEEEEeccC
Confidence 367888999998864
|
This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0056 Score=54.42 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||||+|||+++..++....
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999887653
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.016 Score=53.01 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 88999999999999999999874
|
|
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0063 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|+||+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 47999999999999999999875
|
|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=50.40 Aligned_cols=33 Identities=36% Similarity=0.415 Sum_probs=25.6
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 75 ~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+-....-+.|+.||||+||||+.+-+++.+.
T Consensus 130 ~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 130 KDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred HHHHhcCceeeEEecCCCCChHHHHHHHHHHhh
Confidence 333333344689999999999999999999873
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0016 Score=58.53 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998774
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0049 Score=52.86 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=38.0
Q ss_pred CcEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCceEEEEeecCccccchhhhccc
Q 016800 155 PYKIIILDE-ADSMTEDAQNALRRTMETY---SKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 155 ~~~vliiDe-~d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
.+.++|+|| +..|.......|++.+++. +....+|++|...+.+++-+-.+.
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 677999999 4667777777888887753 335568888988888777655443
|
|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=58.51 Aligned_cols=51 Identities=16% Similarity=0.306 Sum_probs=39.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+++++-..++..+.+.+.+.... ..++|+||+|+||||+..++.+.+..+
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~~~-Glilv~G~tGSGKTTtl~a~l~~~~~~ 343 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHKPQ-GMVLVTGPTGSGKTVSLYTALNILNTE 343 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 356666556777788887775543 248999999999999999999887543
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0096 Score=49.41 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=30.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
+.+++++||.- .++......+.+.+.+... ...+|+++.+..
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 66899999976 6788888888888876532 445777776654
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0092 Score=57.31 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
..|-+.+..|-.+. ++|+|+||+|||+++..++...... ..+++++...+
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ee 118 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEE 118 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccc
Confidence 34455555553333 8999999999999999999876422 24556666543
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00067 Score=53.08 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|++|+||||+++.|.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999985
|
... |
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|+|+||+|||++++.+++.+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 359999999999999999999987
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.012 Score=57.06 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=39.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.+++++-..++..+.|...+.... ..++++||+|+||||+..++...+..
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~~ 268 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLNT 268 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccCC
Confidence 4466776556777788887776543 24899999999999999998888753
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0094 Score=52.11 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=32.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC---CCCceEEeecCCCcchHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL---YKSRVLELNASDDRGINVVRTK 133 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+.|+||||+|||+++..++.....+.. ....++.++..+......+...
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~ 73 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQI 73 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHH
Confidence 799999999999999999866432221 1246677777654344444333
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=55.00 Aligned_cols=24 Identities=38% Similarity=0.521 Sum_probs=22.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++++.|+||+|||++++.+++.+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0041 Score=57.83 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+...++|.||+|+|||++++.+++.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 333499999999999999999999864
|
Members of this family differ in the specificity of RNA binding. |
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.006 Score=52.63 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||||+||||+++.+++.+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 79999999999999999999873
|
|
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0041 Score=53.42 Aligned_cols=22 Identities=45% Similarity=0.844 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.||||+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999876
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||+|+|||++++.+.+..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999998864
|
|
| >TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0047 Score=60.00 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=54.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
++++|+||+||||+|+.++... ....++.... + .....+ ......... + +-+|||.
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~--------g~~~vn~D~l-g--~~~~~~-~~a~~~L~~----------G-~sVVIDa- 427 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPA--------GYKHVNADTL-G--STQNCL-TACERALDQ----------G-KRCAIDN- 427 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHc--------CCeEECcHHH-H--HHHHHH-HHHHHHHhC----------C-CcEEEEC-
Confidence 8999999999999999998864 1233443221 1 111111 111111111 2 3456654
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcc
Q 016800 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (382)
Q Consensus 165 d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 205 (382)
-.+.......+.++..+..-.++++....+.+.....++.|
T Consensus 428 Tn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 428 TNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 45677777888888877665555555544433333333333
|
Note that the EC number for the kinase function is: 2.7.1.78 |
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=64.75 Aligned_cols=124 Identities=20% Similarity=0.214 Sum_probs=69.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceEEeecCCCcchHHHH------HHHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVR------TKIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~ 138 (382)
.+.....+..++.+.. ...++.|.+||||||+++.+...+.. .......++-+ ++.......++ ..+..|.
T Consensus 969 t~~Q~~Av~~il~s~d-r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~gl-APTgrAAk~L~e~Gi~A~TI~s~L 1046 (1747)
T PRK13709 969 TSGQRAATRMILESTD-RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGL-GPTHRAVGEMRSAGVDAQTLASFL 1046 (1747)
T ss_pred CHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEE-CCcHHHHHHHHhcCcchhhHHHHh
Confidence 4555566666665432 25899999999999999998877521 00011223333 22211111111 1122222
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..... .............|+||||+..++......|++.++. ..+++||+++.
T Consensus 1047 ~~~~~-~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~ 1099 (1747)
T PRK13709 1047 HDTQL-QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDT 1099 (1747)
T ss_pred ccccc-ccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecch
Confidence 11000 0000001112457999999999999988889888864 24678898864
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.047 Score=43.62 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
|
|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0079 Score=65.33 Aligned_cols=124 Identities=21% Similarity=0.213 Sum_probs=68.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceEEeecCCCcchHHHH------HHHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVR------TKIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~ 138 (382)
.+.....+..++.... ..+++.|.+|||||++++.+...+.. .......++-+ ++.......++ ..+..|.
T Consensus 837 t~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~gl-APTgkAa~~L~e~Gi~A~TIasfL 914 (1623)
T PRK14712 837 TSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGL-GPTHRAVGEMRSAGVDAQTLASFL 914 (1623)
T ss_pred CHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEE-echHHHHHHHHHhCchHhhHHHHh
Confidence 4566666666665533 24899999999999998887765421 00011223323 22211111111 1122222
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..... ..........+..++||||+..++......|++.++. ..+++|++++.
T Consensus 915 ~~~~~-~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~ 967 (1623)
T PRK14712 915 HDTQL-QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDT 967 (1623)
T ss_pred ccccc-hhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcch
Confidence 11000 0000000011457999999999999888888888864 34678998864
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0008 Score=62.15 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=23.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+....+|.||+|+|||++++.+++.+..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 3334899999999999999999998743
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0011 Score=45.79 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.024 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+=|.|++|+||||+.+.++..+
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCcc
Confidence 48899999999999999998876
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0082 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.++++||.|+||||+.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 489999999999999999984
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.017 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||+++..+...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998764
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0011 Score=55.45 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0088 Score=58.49 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=32.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
+++++++||+- .+.++....+++.+.+.-+.+.+|-++..+
T Consensus 533 kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 533 KPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred CCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 77899999985 678899999999999865556677776543
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.001 Score=53.82 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++++|.||+||||++..+. .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999998 54
|
|
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.025 Score=46.80 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.||+|+|||+++..++..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.014 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.718 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++|.||||+||+|.+..+++.+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 459999999999999999999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.017 Score=48.70 Aligned_cols=40 Identities=10% Similarity=0.251 Sum_probs=27.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecC
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~ 194 (382)
+++++++||.. .|.++.....+..|.+... ....|++|..
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE 195 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech
Confidence 67899999986 5688888888888876432 2334555543
|
|
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0023 Score=52.92 Aligned_cols=30 Identities=37% Similarity=0.374 Sum_probs=23.8
Q ss_pred HHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 77 LETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 77 l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+..++...+++.|++|+||||+++.+++.+
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 333333348899999999999999999986
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0076 Score=50.06 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=29.5
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 156 YKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 156 ~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
.+++++||.. .++......+.+.+.+.. ....+|+++.+.+
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 7899999975 567888888888777643 2345677777654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0068 Score=58.19 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=38.6
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+++++-..+...+.+.+.+.... ..+|++||+|+||||++.++.+.+..+
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~~~-GliLvtGpTGSGKTTtL~a~l~~~~~~ 245 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQPQ-GLILVTGPTGSGKTVTLYSALQTLNTA 245 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHhcC-CeEEEECCCCCChHHHHHHHHHhhCCC
Confidence 366666556777778887775543 248999999999999999988887543
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0013 Score=54.39 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.|.||+||||+++.+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
|
|
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.01 Score=48.51 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~~ 25 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDGY 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 78999999999999998876543
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.021 Score=49.51 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=32.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEEeecCCCcchHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
+.|+||||+|||+++..++.....++ .....++.++..+......+..
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 89999999999999999987753321 0124566777655433334433
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.015 Score=50.04 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=55.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---c-----------eEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKS---R-----------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 150 (382)
+++.|++|+|||+++..+....+....... . .+.+..-|..+....+.....+...
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~---------- 77 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG---------- 77 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC----------
Confidence 899999999999999999988765322111 0 0112222444555555444333211
Q ss_pred CCCCCcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcccc
Q 016800 151 YPCPPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYISRI 198 (382)
Q Consensus 151 ~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l 198 (382)
+..-+++.|... .-..+........+.+.. ....+|++.|..+..
T Consensus 78 ---~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (219)
T COG1100 78 ---ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124 (219)
T ss_pred ---CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 133455555554 223344444554444433 457788888876543
|
|
| >KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.077 Score=49.04 Aligned_cols=97 Identities=9% Similarity=0.058 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCCCH-----------------HHHHHHHHHHHhcCCceEEEEeecCc--c---------------ccchh
Q 016800 156 YKIIILDEADSMTE-----------------DAQNALRRTMETYSKVTRFFFICNYI--S---------------RIIEP 201 (382)
Q Consensus 156 ~~vliiDe~d~l~~-----------------~~~~~Ll~~le~~~~~~~~Il~~~~~--~---------------~l~~~ 201 (382)
+-+|.||++..+.. ...+.+++++..--....+|++.+.. - .+.+.
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~e 395 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEE 395 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCcc
Confidence 34788999887632 12466777776543333455554411 0 01122
Q ss_pred hhc---ccceEEecCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHhcCCCHHHH
Q 016800 202 LAS---RCAKFRFKPLSEEVMSSRVLHICNEE----GLNLDAEALSTLSSISQGDLRRA 253 (382)
Q Consensus 202 l~s---r~~~i~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~s~gdlr~a 253 (382)
... -+..++.++++.+|...++.+..+.. .+ .+++..+.+.-+|+||++..
T Consensus 396 gfe~lqpf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv-~~Ee~~kql~fLSngNP~l~ 453 (461)
T KOG3928|consen 396 GFEALQPFVPIEVENYTLDEFEALIDYYLQSNWLLKKV-PGEENIKQLYFLSNGNPSLM 453 (461)
T ss_pred chhhccCcCccccCCCCHHHHHHHHHHHHHhhHHHhhc-CcccchhhhhhhcCCCHHHH
Confidence 222 23368899999999999888866542 22 24667788888899999543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.018 Score=47.36 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||.. .++......+.+.+.+. . ..+|+++.+..
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~-~tiiivsh~~~ 149 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL-G-ITVISVGHRPS 149 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh-C-CEEEEEeCChh
Confidence 67899999976 57888888888888876 2 44667776653
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.06 Score=47.77 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
-+|++||.|+||||+.-++..+++...
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 489999999999999999999986543
|
|
| >PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases [] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.053 Score=43.80 Aligned_cols=120 Identities=13% Similarity=0.182 Sum_probs=63.5
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc---chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 88 ~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
.+..||||||++.+|.+.+. . |. .+...+.. ....+...+..+.. ....+||.|--
T Consensus 5 IAtiGCGKTTva~aL~~LFg-~-wg-----HvQnDnI~~k~~~~f~~~~l~~L~~--------------~~~~vViaDRN 63 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFG-E-WG-----HVQNDNITGKRKPKFIKAVLELLAK--------------DTHPVVIADRN 63 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcC-C-CC-----ccccCCCCCCCHHHHHHHHHHHHhh--------------CCCCEEEEeCC
Confidence 57899999999999998762 1 21 12222211 22223333333311 15679999875
Q ss_pred CCCCHHHHHHHHHHHHhcCC-------ceEEEEee---cC-ccc----cchhhhcccc---eEEecCCCHHHHHHHHHHH
Q 016800 165 DSMTEDAQNALRRTMETYSK-------VTRFFFIC---NY-ISR----IIEPLASRCA---KFRFKPLSEEVMSSRVLHI 226 (382)
Q Consensus 165 d~l~~~~~~~Ll~~le~~~~-------~~~~Il~~---~~-~~~----l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~ 226 (382)
.... .....|+..++...+ ++++|... +. ... ..+.+..|.. .+.........+..++...
T Consensus 64 Nh~~-reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gF 142 (168)
T PF08303_consen 64 NHQK-RERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGF 142 (168)
T ss_pred CchH-HHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHH
Confidence 5553 334556666655433 56666554 11 111 1233444553 5666665666666666555
Q ss_pred HHH
Q 016800 227 CNE 229 (382)
Q Consensus 227 ~~~ 229 (382)
+++
T Consensus 143 i~r 145 (168)
T PF08303_consen 143 IKR 145 (168)
T ss_pred HHh
Confidence 544
|
Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.017 Score=47.30 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..+++||.|+|||++.++++-.+.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999765543
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.017 Score=52.74 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=34.0
Q ss_pred CCCCCccc--C--cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 57 PKQVKDVA--H--QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 57 p~~~~~~~--g--~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.++++++ | .+.....|...+..+ .++++.|++|+||||++++++..+
T Consensus 121 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 121 IFTLDQYVERGIMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhh
Confidence 34555664 2 244445565556543 369999999999999999999875
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.028 Score=53.13 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||++..++...
T Consensus 194 i~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.022 Score=52.68 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998763
|
|
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.026 Score=45.91 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||+++..+...-
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~~ 24 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKGI 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988653
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.022 Score=47.47 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=34.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCccccchhhhcccceEEe
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYISRIIEPLASRCAKFRF 211 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sr~~~i~~ 211 (382)
+.+++++||.. .++......+.+.+.+... ...+|+++.....+ ..-.|+..++.
T Consensus 116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~--~~adrvi~i~~ 172 (178)
T cd03239 116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF--ENADKLIGVLF 172 (178)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH--hhCCeEEEEEE
Confidence 55799999987 5677777777777765432 24577777765432 23344444443
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=47.26 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=24.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
-+-|+|.+|+||||+|.++.+.+...+
T Consensus 25 viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 25 VIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 389999999999999999999996544
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0026 Score=55.20 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHc--CCCCc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 66 QEEVVRVLTNTLET--ANCPH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 66 ~~~~~~~l~~~l~~--~~~~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+.++.|...+.. ...+. +.+.|++|+||||+|+.++..+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566666666643 22233 89999999999999999999884
|
|
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0062 Score=56.86 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=37.7
Q ss_pred CcEEEEEeCCCCCCHH------------------------HHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADSMTED------------------------AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~------------------------~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
...+|||||++.+.+. ..+.+-.+.+....+.-||++|.++..+.+.++..+.
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~~Id~~iR~lvE 157 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDIRAMIE 157 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHHHhhHHHHHhhh
Confidence 4469999999977321 1223333334556677899999999999999988776
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=48.81 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=18.3
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
++|+||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
|
|
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
Probab=96.75 E-value=0.018 Score=46.59 Aligned_cols=20 Identities=45% Similarity=0.818 Sum_probs=18.8
Q ss_pred EeCCCCCCHHHHHHHHHHHh
Q 016800 87 FYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 87 l~Gp~G~GKt~la~~la~~l 106 (382)
+.||||+||+|++..+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 57999999999999999987
|
Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A .... |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0049 Score=52.21 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=30.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
+.+++++||.. .++......+.+.+.+... ...+|+++....
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 66899999975 5678888888888876532 345667776654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0081 Score=57.66 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||||++..++..+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHH
Confidence 8999999999999999999876
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.013 Score=56.36 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=66.9
Q ss_pred CcHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh--
Q 016800 65 HQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-- 141 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 141 (382)
-++...+.+..|....+ ....++.-|+|+|||.++..++..+... ++.+-+. .....+|.+.+..+....
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~------~Lvlv~~-~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRS------TLVLVPT-KELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCC------EEEEECc-HHHHHHHHHHHHHhcCCccc
Confidence 34444455555555422 2238999999999999999999988422 3333222 223445544333332211
Q ss_pred ---hcCCC-CC-------------------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 142 ---VGSGQ-RR-------------------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 142 ---~~~~~-~~-------------------~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.+++. .. ..+...++.+||+||+|+++.+....+...+..+.. ++=++++
T Consensus 110 ~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~--~LGLTAT 182 (442)
T COG1061 110 IGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP--RLGLTAT 182 (442)
T ss_pred cceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccc--eeeeccC
Confidence 00000 00 111122678999999999987776666666655433 4555554
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.01 Score=48.78 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=17.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
++++.||+|+|||..+...+-
T Consensus 16 ~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 16 NVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCccHHHHHHHHH
Confidence 699999999999999875443
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0075 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
-+-|.||+||||||+.+.++-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998765
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0019 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.|++|+||||+++.+++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+||||+.+++...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999974
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.017 Score=47.37 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 4 v~~vG~~~vGKTsli~~~~~~~ 25 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVKGT 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987643
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.013 Score=48.53 Aligned_cols=42 Identities=12% Similarity=0.297 Sum_probs=30.2
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
+++++++||.. .+.......+.+.+.+... ...+|+++.+..
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 67899999975 5677888888888876532 345666666543
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0031 Score=58.17 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 80 ~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
|+....+|+||+|+|||++++.+++.+..
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45456999999999999999999998743
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0017 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.+++.||||+||||+++.+++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999876
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.02 Score=50.16 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=25.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++++||||+|||+++..++...... +..++.+...
T Consensus 24 ~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~e 58 (237)
T TIGR03877 24 VLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALE 58 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEee
Confidence 8999999999999999887764322 2345555543
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0017 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++|.|++|+||||+.+.+|+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 469999999999999999999998
|
|
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.023 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++|.|.+|+||||+++.+++.+
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 349999999999999999999987
|
|
| >COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0066 Score=51.52 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+.+.|++|+||||+++.+...+.+.
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 7899999999999999999998643
|
|
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.028 Score=51.87 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
++....|..+++.+ .++++.|++|+||||+++++...+
T Consensus 165 ~~~~~~L~~~v~~~--~~ili~G~tGsGKTTll~al~~~i 202 (340)
T TIGR03819 165 PGVARLLRAIVAAR--LAFLISGGTGSGKTTLLSALLALV 202 (340)
T ss_pred HHHHHHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHccC
Confidence 34444455455443 379999999999999999998876
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=53.54 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++++||+|+||||+++++++.+.
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999999874
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0089 Score=51.26 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=33.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
+++++|+||.- .+....|..++.++.+.. .+..+|+++.+. .+...+-+|+.
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~ 213 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIA 213 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhhee
Confidence 67899999975 456666777777766432 234577777653 34455556654
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.023 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++....
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999998887764
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0055 Score=54.75 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||++..++..+.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78889999999999999998774
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.02 Score=64.42 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=70.8
Q ss_pred cccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHH------
Q 016800 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK------ 135 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------ 135 (382)
.+...+.....+..++.+.. ...++.|++|+|||++++.+...+...+ ..+.-+- +.......+.+...
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~-~v~ii~G~aGTGKTt~l~~l~~~~~~~G---~~V~~lA-PTgrAA~~L~e~~g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTK-RFIIINGFGGTGSTEIAQLLLHLASEQG---YEIQIIT-AGSLSAQELRQKIPRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCC-CeEEEEECCCCCHHHHHHHHHHHHHhcC---CeEEEEe-CCHHHHHHHHHHhcchhhhH
Confidence 33445666677777666643 2489999999999999999988764332 3344333 22222222221111
Q ss_pred -HHHHhhhcCCC-----CC--CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 136 -TFAAVAVGSGQ-----RR--GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 136 -~~~~~~~~~~~-----~~--~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.+......... .+ ......+..+|||||+..++......|++..+.. ++++||+++
T Consensus 502 ~~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~--garvVlvGD 565 (1960)
T TIGR02760 502 ITWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQH--NSKLILLND 565 (1960)
T ss_pred HHHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhhc--CCEEEEEcC
Confidence 00000000000 00 0001125679999999999988888888776543 456787775
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.038 Score=49.12 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.++|.||+|+|||+++..++..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4599999999999999999988864
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.027 Score=45.68 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998653
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||+++..+...-
T Consensus 8 kivvvG~~~vGKTsli~~l~~~~ 30 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNT 30 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998654
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >PRK12337 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.026 Score=53.53 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=22.5
Q ss_pred Cc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
|. +++.|++|+||||++..++..+.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 44 89999999999999999999873
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.025 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.++|.||.|.|||++.+.++-
T Consensus 33 ~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 33 CQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999887
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0023 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999874
|
|
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.021 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||+++..+...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999865
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.32 Score=44.66 Aligned_cols=37 Identities=32% Similarity=0.418 Sum_probs=27.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+-|.|+||+||||++..+...+...+ ....++.+++.
T Consensus 59 igi~G~~GaGKSTl~~~l~~~l~~~g-~~v~vi~~Dp~ 95 (332)
T PRK09435 59 IGITGVPGVGKSTFIEALGMHLIEQG-HKVAVLAVDPS 95 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeCCC
Confidence 88999999999999999998875332 23344555544
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.033 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999987654
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.018 Score=47.30 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998754
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.036 Score=45.19 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0026 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++++|++|+|||++++.+++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.015 Score=50.53 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|+||+|||+++..++....
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~ 41 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGL 41 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987653
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 382 | ||||
| 1sxj_D | 353 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 2e-87 | ||
| 2chq_A | 319 | Replication Factor C Adpnp Complex Length = 319 | 3e-71 | ||
| 1iqp_A | 327 | Crystal Structure Of The Clamp Loader Small Subunit | 5e-67 | ||
| 2chg_A | 226 | Replication Factor C Domains 1 And 2 Length = 226 | 4e-63 | ||
| 1sxj_C | 340 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 6e-52 | ||
| 1sxj_B | 323 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 3e-51 | ||
| 1sxj_E | 354 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 9e-31 | ||
| 3u5z_B | 324 | Structure Of T4 Bacteriophage Clamp Loader Bound To | 4e-16 | ||
| 3glh_B | 376 | Crystal Structure Of The E. Coli Clamp Loader Bound | 4e-13 | ||
| 3glf_B | 395 | Crystal Structure Of The Ecoli Clamp Loader Bound T | 4e-13 | ||
| 1jr3_A | 373 | Crystal Structure Of The Processivity Clamp Loader | 4e-13 | ||
| 1xxi_B | 368 | Adp Bound E. Coli Clamp Loader Complex Length = 368 | 5e-13 | ||
| 3glg_B | 395 | Crystal Structure Of A Mutant (Gammat157a) E. Coli | 6e-13 | ||
| 1njg_A | 250 | Nucleotide-Free Form Of An Isolated E. Coli Clamp L | 7e-13 | ||
| 1sxj_A | 516 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 5e-11 | ||
| 1ixr_C | 312 | Ruva-Ruvb Complex Length = 312 | 6e-05 | ||
| 1ixs_B | 318 | Structure Of Ruvb Complexed With Ruva Domain Iii Le | 8e-05 | ||
| 1hqc_A | 324 | Structure Of Ruvb From Thermus Thermophilus Hb8 Len | 9e-05 | ||
| 3pvs_A | 447 | Structure And Biochemical Activities Of Escherichia | 2e-04 | ||
| 1j7k_A | 334 | Thermotoga Maritima Ruvb P216g Mutant Length = 334 | 3e-04 | ||
| 1in5_A | 334 | Thermogota Maritima Ruvb A156s Mutant Length = 334 | 3e-04 | ||
| 1in4_A | 334 | Thermotoga Maritima Ruvb Holliday Junction Branch M | 3e-04 | ||
| 1in7_A | 334 | Thermotoga Maritima Ruvb R170a Length = 334 | 3e-04 | ||
| 1in8_A | 334 | Thermotoga Maritima Ruvb T158v Length = 334 | 3e-04 | ||
| 1in6_A | 334 | Thermotoga Maritima Ruvb K64r Mutant Length = 334 | 6e-04 |
| >pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353 | Back alignment and structure |
|
| >pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319 | Back alignment and structure |
|
| >pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 | Back alignment and structure |
|
| >pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226 | Back alignment and structure |
|
| >pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340 | Back alignment and structure |
|
| >pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323 | Back alignment and structure |
|
| >pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 354 | Back alignment and structure |
|
| >pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4 Clamp, Primer-Template Dna, And Atp Analog Length = 324 | Back alignment and structure |
|
| >pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376 | Back alignment and structure |
|
| >pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer-template Dna Length = 395 | Back alignment and structure |
|
| >pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 373 | Back alignment and structure |
|
| >pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex Length = 368 | Back alignment and structure |
|
| >pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395 | Back alignment and structure |
|
| >pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250 | Back alignment and structure |
|
| >pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 516 | Back alignment and structure |
|
| >pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312 | Back alignment and structure |
|
| >pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318 | Back alignment and structure |
|
| >pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324 | Back alignment and structure |
|
| >pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli Mgsa Length = 447 | Back alignment and structure |
|
| >pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant Length = 334 | Back alignment and structure |
|
| >pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant Length = 334 | Back alignment and structure |
|
| >pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch Migration Motor Length = 334 | Back alignment and structure |
|
| >pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a Length = 334 | Back alignment and structure |
|
| >pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v Length = 334 | Back alignment and structure |
|
| >pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 437 bits (1126), Expect = e-154
Identities = 138/322 (42%), Positives = 196/322 (60%), Gaps = 12/322 (3%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG ++ +E+NASD+RGI+VVR KIK FA R P+KII LDEA
Sbjct: 61 DLFGEN-WRDNFIEMNASDERGIDVVRHKIKEFA--------RTAPIGGAPFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEV 284
IC +EG+ + + L L IS GD R+AI LQGAA + + + + ++ PE
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE-VVDADTIYQITATARPEE 230
Query: 285 VEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARICKCL 343
+ L G+F A + ++ ++ E G +++QLF ++ I D + ++ L
Sbjct: 231 MTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIIS-MPIKDSLKVQLIDKL 289
Query: 344 AEVDKCLVDGADEYLQLLDVAS 365
EVD L +GA+E +QL +
Sbjct: 290 GEVDFRLTEGANERIQLDAYLA 311
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353 | Back alignment and structure |
|---|
Score = 438 bits (1128), Expect = e-154
Identities = 159/352 (45%), Positives = 224/352 (63%), Gaps = 10/352 (2%)
Query: 23 FSTTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC 82
F + ++ ++ + + + QPWVEKYRPK + +V Q+ V VL TL++AN
Sbjct: 2 FEGFGPNKKRKISKLAAEQS---LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANL 58
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
PHMLFYGPPGTGKT+T LA+ +L+GP+L KSR+LELNASD+RGI++VR K+K FA + V
Sbjct: 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTV 118
Query: 143 --GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200
S YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+
Sbjct: 119 SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178
Query: 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
PLAS+C+KFRFK L R+ I +E + D L + IS GDLRR IT LQ A
Sbjct: 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA 238
Query: 261 ARLFG-----SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPAS 315
++ +ITS + ++GV+P +++ + +SGDFD K VN + G+ A+
Sbjct: 239 SKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAA 298
Query: 316 LLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNV 367
+++QL + + ++ + +I L D L +G +E++QLL++ +
Sbjct: 299 SVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKI 350
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 | Back alignment and structure |
|---|
Score = 433 bits (1114), Expect = e-152
Identities = 113/337 (33%), Positives = 182/337 (54%), Gaps = 14/337 (4%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105
+ + PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +
Sbjct: 10 KENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD 165
++G Y + VLELNASDDRGI+VVR +IK FA+ +K+IILDEAD
Sbjct: 70 IYGKN-YSNMVLELNASDDRGIDVVRNQIKDFASTRQ--------IFSKGFKLIILDEAD 120
Query: 166 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225
+MT AQNALRR +E Y+K TRF + NY ++ L S+C +FRF+PL +E + R+ +
Sbjct: 121 AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIAN 180
Query: 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----SITSKDLISVSGVIP 281
+ E L L A L +S GD+RR + LQ + I+ + G
Sbjct: 181 VLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPR 240
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P ++ + D+ A+ +N + A+G L+ + ++ + E ++E + +
Sbjct: 241 PSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLL 300
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIRAVCNMPEE 377
LA+++ + G ++ +Q V + + N +
Sbjct: 301 TKLADIEYSISKGGNDQIQGSAVIGAIKASFENETVK 337
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 | Back alignment and structure |
|---|
Score = 431 bits (1109), Expect = e-152
Identities = 133/327 (40%), Positives = 198/327 (60%), Gaps = 12/327 (3%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTA 99
++ V +PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GKTT A
Sbjct: 4 EIREVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAA 63
Query: 100 LAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159
LA+A +LFG ++ LELNASD+RGINV+R K+K FA R +KII
Sbjct: 64 LALARELFGEN-WRHNFLELNASDERGINVIREKVKEFA--------RTKPIGGASFKII 114
Query: 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
LDEAD++T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL +E +
Sbjct: 115 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI 174
Query: 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
+ R+ +I EGL L E L + I++GD+RRAI LQ AA L IT +++ V+
Sbjct: 175 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK-KITDENVFMVASR 233
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEV-NNIIAEGYPASLLLSQLFDVVVETEDISDEQQAR 338
PE + + + G+F A +++ ++ +G +L Q+ V I + ++
Sbjct: 234 ARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN-LPIEEPKKVL 292
Query: 339 ICKCLAEVDKCLVDGADEYLQLLDVAS 365
+ + E + LV+GA+E +QL + +
Sbjct: 293 LADKIGEYNFRLVEGANEIIQLEALLA 319
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 | Back alignment and structure |
|---|
Score = 425 bits (1095), Expect = e-150
Identities = 116/329 (35%), Positives = 174/329 (52%), Gaps = 11/329 (3%)
Query: 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100
M+ L PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+
Sbjct: 1 MSKTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60
Query: 101 AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160
+AH+L G Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+I
Sbjct: 61 CLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVI 112
Query: 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMS 220
LDEADSMT AQ ALRRTME YS TRF F CN ++IIEPL S+CA R+ LS+E +
Sbjct: 113 LDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172
Query: 221 SRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVI 280
R+L I E + + L + ++GD+R+AI LQ G + + ++ +
Sbjct: 173 KRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG-LVNADNVFKIVDSP 231
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340
P +V+ + D ++ +GY + +++ F V + + + +
Sbjct: 232 HPLIVKKMLLASNL--EDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMI 289
Query: 341 KCLAEVDKCLVDGADEYLQLLDVASNVIR 369
K + +++G YLQL + + + +
Sbjct: 290 KEIGLTHMRILEGVGTYLQLASMLAKIHK 318
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 | Back alignment and structure |
|---|
Score = 381 bits (979), Expect = e-132
Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 29/352 (8%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTN-TLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
WV+KYRPK + ++H EE+ L + + + + PH+L YGP GTGK T +A+ +F
Sbjct: 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61
Query: 108 GPELYKSRV-----------------------LELNASDDRGIN--VVRTKIKTFAAVAV 142
GP +Y+ ++ LE+ SD + V++ +K A +
Sbjct: 62 GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202
Q YK +I++EA+S+T+DAQ ALRRTME YSK R +C+ +S II P+
Sbjct: 122 VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPI 181
Query: 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAA 261
S+C R S+ +S+ + + E + L+ + L ++ S G+LR ++ L+ A
Sbjct: 182 KSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA 241
Query: 262 RLFGSSITSKDLI--SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319
++ S I ++ ++ + + +++A PA+++L
Sbjct: 242 LNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILK 301
Query: 320 QLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371
+L +++ E ++ ++ I + + D+ L G L + V+ +
Sbjct: 302 ELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 368 bits (946), Expect = e-129
Identities = 116/235 (49%), Positives = 155/235 (65%), Gaps = 10/235 (4%)
Query: 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104
+++ + WVEKYRP+ + +V Q+EV++ L +E N PH+LF GPPGTGKT TA+A+A
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Query: 105 QLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164
LFG E ++ +E+NASD+RGI+VVR KIK FA R P+KII LDEA
Sbjct: 61 DLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFA--------RTAPIGGAPFKIIFLDEA 111
Query: 165 DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVL 224
D++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L
Sbjct: 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLL 171
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279
IC +EG+ + + L L IS GD R+AI LQGAA + + + + ++
Sbjct: 172 EICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGE-VVDADTIYQITAT 225
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324 | Back alignment and structure |
|---|
Score = 357 bits (917), Expect = e-123
Identities = 75/333 (22%), Positives = 131/333 (39%), Gaps = 35/333 (10%)
Query: 40 KMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGP-PGTGKTTT 98
M V + +KYRP + + + PH++ + P PGTGKTT
Sbjct: 5 SMITVNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTV 64
Query: 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158
A A+ H + ++ +N SD + I+ VR + FA+ A K+
Sbjct: 65 AKALCHDVNAD------MMFVNGSDCK-IDFVRGPLTNFASAAS---------FDGRQKV 108
Query: 159 IILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217
I++DE D S ++Q LR ME YS N I II+PL SRC F ++E
Sbjct: 109 IVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDE 168
Query: 218 -------VMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269
M R+ IC EG+ + D + ++ L + D R+ I L + +
Sbjct: 169 DKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYSS--KGVLD 226
Query: 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETE 329
+ L V+ ++ + ++ D A+ S + +L + +
Sbjct: 227 AGILSLVTN--DRGAIDDVLESLKNKDVKQLRALAPKYAAD---YSWFVGKLAEEIYSR- 280
Query: 330 DISDEQQARICKCLAEVDKCLVDGADEYLQLLD 362
++ + R+ + + E ++ A+ L L
Sbjct: 281 -VTPQSIIRMYEIVGENNQYHGIAANTELHLAY 312
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 324 bits (833), Expect = e-107
Identities = 74/378 (19%), Positives = 130/378 (34%), Gaps = 46/378 (12%)
Query: 24 STTQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE----- 78
++ S P + S + W KY P ++ V + V L N L
Sbjct: 2 GSSHHHHHHSSGLEVLFQGPHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENS 61
Query: 79 ------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126
+ + YGPPG GKTT A +A +L +LE NASD R
Sbjct: 62 KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL------GYDILEQNASDVRS 115
Query: 127 INVVRTKIKTFA----AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182
++ +K V + +II+DE D M+ + + + +
Sbjct: 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC 175
Query: 183 SKVTRFF-FICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALS 240
K + ICN + + P C +F+ + SR++ I E LD +
Sbjct: 176 RKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVID 235
Query: 241 TLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRS------ 294
L ++GD+R+ I L + +I +++ +S + F +
Sbjct: 236 RLIQTTRGDIRQVINLLSTISTTTK-TINHENINEISKAWEKNIALKPFDIAHKMLDGQI 294
Query: 295 -GDFDLANKEVNNIIAEGY-PASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVD 352
D N +N+ IA + + + + T + + +AE C+
Sbjct: 295 YSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAANCISL 354
Query: 353 GADEYLQLLDVASNVIRA 370
G D+ IR+
Sbjct: 355 G--------DIVEKKIRS 364
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 6e-28
Identities = 68/308 (22%), Positives = 121/308 (39%), Gaps = 63/308 (20%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL---FGP 109
K+RP+ DV QE V+ L N L H LF G G GKT+ A +A L G
Sbjct: 9 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68
Query: 110 ------------ELYKSR---VLELNASDDRGINVVRTKIKT--FAAVAVGSGQRRGGYP 152
E+ + R ++E++A+ + R + +A
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---------- 118
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTME---TYSKVTRFFFICNYISRIIEPLA------ 203
+K+ ++DE ++ + NAL +T+E + K F+ LA
Sbjct: 119 --RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK-----FL----------LATTDPQK 161
Query: 204 ------SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257
SRC +F K L E + ++ HI NEE + + AL L+ ++G LR A++
Sbjct: 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221
Query: 258 QGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLL 317
A ++++ + ++ G + + L + + +N A G L
Sbjct: 222 DQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEAL 281
Query: 318 LSQLFDVV 325
L ++ ++
Sbjct: 282 LVEMLGLL 289
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Length = 250 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-25
Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 33/246 (13%)
Query: 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQL---FGP 109
K+RP+ DV QE V+ L N L H LF G G GKT+ A +A L G
Sbjct: 16 KWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 75
Query: 110 ------------ELYKSR---VLELNASDDRGINVVRTKIKT--FAAVAVGSGQRRGGYP 152
E+ + R ++E++A+ + R + +A
Sbjct: 76 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG---------- 125
Query: 153 CPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212
+K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K
Sbjct: 126 --RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLK 183
Query: 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272
L E + ++ HI NEE + + AL L+ ++G LR A++ A ++++
Sbjct: 184 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQA 243
Query: 273 LISVSG 278
+ ++ G
Sbjct: 244 VSAMLG 249
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-25
Identities = 48/262 (18%), Positives = 84/262 (32%), Gaps = 49/262 (18%)
Query: 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLF-----GPE--------- 110
L + + H +L PG G A++ L G +
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 111 LYKSR----VLELNASDDR---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163
L ++ L + G++ VR + A G K++ + +
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGG----------AKVVWVTD 116
Query: 164 ADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223
A +T+ A NAL +T+E T FF R++ L SRC P E+ + +
Sbjct: 117 AALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL 176
Query: 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA--------RLFGSSITSKDLIS 275
+ + +AL +S G A+ QG + S+ S D S
Sbjct: 177 -----SREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYS 231
Query: 276 VSGVI----PPEVVEGLFAVCR 293
+ + P + L +
Sbjct: 232 LLAALNHEQAPARLHWLATLLM 253
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 4e-15
Identities = 63/434 (14%), Positives = 114/434 (26%), Gaps = 116/434 (26%)
Query: 5 FGKIHKSGKNK---------SPNF---TQKFSTTQSSPEKSEDEVKRKMAPVLQSSQPWV 52
F + + N+ T Q P + + +Q
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-- 125
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPH--MLFYGPPGTGKTTTALAIA-----HQ 105
+ V + + L L P +L G G+GKT AL +
Sbjct: 126 --FAKYNVS----RLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 106 LFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC-PPYKIIILDEA 164
++ LN + V ++ + R + +I
Sbjct: 179 KMD-----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI------ 227
Query: 165 DSMTEDAQNALRRTM--ETYSK---VTRFFFICNYISRIIEPLASRCAKF----RFKPLS 215
Q LRR + + Y V + N ++ C K RFK ++
Sbjct: 228 ----HSIQAELRRLLKSKPYENCLLVLL--NVQN--AKAWNAFNLSC-KILLTTRFKQVT 278
Query: 216 EEVMSSRVLHICNEE---GLNLDAEALSTLSS---ISQGDLRRAITYLQG---AARLFGS 266
+ + ++ HI + L D E S L DL R + L +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIAE 335
Query: 267 SITS----------------KDLISVS-GVIPPEVVEGLFAVCRSGDFDLA--NKEVNNI 307
SI +I S V+ P +F L+ +I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-------DRLSVFPPSA-HI 387
Query: 308 IAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV--DGADEYLQLLDVAS 365
P LL ++ + I + + K LV + + + +
Sbjct: 388 -----PTILL------SLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIY- 432
Query: 366 NVIRAVCNMPEEFQ 379
+ + E+
Sbjct: 433 --LELKVKLENEYA 444
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 2e-13
Identities = 51/304 (16%), Positives = 96/304 (31%), Gaps = 75/304 (24%)
Query: 53 EKYRPKQV-KDVAHQEEVVRVLTN----TLETANCPH-MLFYGPPGTGKTTTALAIA--- 103
+ P+Q + + Q R E +L G PGTGKT A+ +A
Sbjct: 35 DALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94
Query: 104 -----------HQLFGPELYKSR-----------------------VLELNASDDRGINV 129
++F E+ K+ + E++ + R
Sbjct: 95 GPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGF 154
Query: 130 ----------VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179
++++++ V + G P ++ +DE + ++ + L R +
Sbjct: 155 LALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP-GVLFIDEVHMLDIESFSFLNRAL 213
Query: 180 E-TYSKVTRFFFICNYISRIIEP------------LASRCAKFRFKPLSEEVMSSRVLHI 226
E + V N I L R P SE+ +
Sbjct: 214 ESDMAPV--LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIR 271
Query: 227 CNEEGLNLDAEALSTLSSI-SQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285
C EE + + +A + L+ I + LR AI + A+ + + V + + V
Sbjct: 272 CEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLV--CRKRKGTEVQVDDI---KRV 326
Query: 286 EGLF 289
LF
Sbjct: 327 YSLF 330
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 5e-13
Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 49/261 (18%)
Query: 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKT 96
++ + Y PK++ H+E+ ++ L L + P G PGTGKT
Sbjct: 2 AIVVDDSVFSPSYVPKRLP---HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKT 58
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC--- 153
T + + +R + +N R + +I ++ R G
Sbjct: 59 VTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEIAR----SLNIPFPRRGLSRDEF 112
Query: 154 -----------PPYKIIILDEADSMTEDAQNALRRTMETYSKVTR----FFFICN---YI 195
Y ++LD+A ++ D + R + K+ + + +
Sbjct: 113 LALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172
Query: 196 SRIIEPLASRCA--KFRFKPLSE----EVMSSRVLH-----ICNEEGLNLDAE--ALSTL 242
+ + RF P ++ +++ R +E+ L + A+ T
Sbjct: 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 232
Query: 243 SSISQGDLRRAITYLQGAARL 263
++GD R AI L +A
Sbjct: 233 LDTNRGDARLAIDILYRSAYA 253
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 5e-13
Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 27/223 (12%)
Query: 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126
+ + ++ LF G GTGKT + I +++ + ++ +
Sbjct: 30 RDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89
Query: 127 INVVRTKIKTFAAVA---------------VGSGQRRGGYPCPPYKIIILDEADSMTE-- 169
V T +++A + II LDE D++ +
Sbjct: 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRR 149
Query: 170 DAQNALRRTMETYSKVTRFFFICN---YISRIIEPLASRCAKFRFKPL-----SEEVMSS 221
L + + + + ++ I N + + S + ++S
Sbjct: 150 GGDIVLYQLLRSDANIS-VIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSK 208
Query: 222 RVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
+ + + + ++ +S+ GD R+A+ L AA+L
Sbjct: 209 YAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 46 QSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102
+ QP + RP+ + Q+ ++ + L +E + M+ +GPPGTGKTT A I
Sbjct: 11 NTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVI 70
Query: 103 AHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147
A + V ++A G+ +R I+ A +G+R
Sbjct: 71 ARYA------NADVERISAVTS-GVKEIREAIER-ARQNRNAGRR 107
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 198 IIEPLASRCAKFRFKPLSEEVMSS---RVLHICN----EEGLNLDAEALSTLSSISQGDL 250
+ L SR + K LS E + + + + + L E ++ + GD
Sbjct: 149 LNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA 208
Query: 251 RRAITYLQGAARLFGSSITSKDLISVSGV 279
RRA+ L+ A + + K ++ +
Sbjct: 209 RRALNTLEMMADMAEVDDSGKRVLKPELL 237
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Length = 305 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 9e-10
Identities = 51/322 (15%), Positives = 113/322 (35%), Gaps = 57/322 (17%)
Query: 66 QEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR---VLELN- 120
++ + L +E + L G + +L + + E + + VLE++
Sbjct: 2 AKDQLETLKRIIEKSEGISI-LINGEDLSYPREVSLELPEYV---EKFPPKASDVLEIDP 57
Query: 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180
++ GI+ +RT IK F + K +I+ + + MT+ A NA + +E
Sbjct: 58 EGENIGIDDIRT-IKDFLNYSPELYT---------RKYVIVHDCERMTQQAANAFLKALE 107
Query: 181 ---TYSKVTRFFFICN--YISRIIEPLASRCAKFR------FKPLSEEVMSSRVLHIC-N 228
Y+ + N ++ + SR + F+ L +E + +
Sbjct: 108 EPPEYAV-----IVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLL 162
Query: 229 EEGLNLDAEALSTLSSISQGDLRRAITYL-------QGAARLFGSSITSKDLISVSGVIP 281
E EA + G L ++ L + ++ + ++L+ +
Sbjct: 163 ERDFKTALEAYKLGAEKLSG-LMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVE 221
Query: 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICK 341
+ LF +V N I G A LL+ +L +++ + +
Sbjct: 222 SKEFFALF------------DQVTNTI-TGKDAFLLIQRLTRIILHENTWESVEDQKSVS 268
Query: 342 CLAEVDKCLVDGADEYLQLLDV 363
L + + + + L L+++
Sbjct: 269 FLDSILRVKIANLNNKLTLMNI 290
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 6e-09
Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 25/225 (11%)
Query: 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123
++ +L ++ YG GTGKT + +L L K + + +N
Sbjct: 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86
Query: 124 DRGINVVRTKIKTFAAVAVGSG----------QRRGGYPCPPYKIIILDEADSM-TEDAQ 172
V + V V + +I+LDE D+ +
Sbjct: 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND 146
Query: 173 NALRRTMETYSKVTR----FFFICN---YISRIIEPLASRCAKFR--FKPLS----EEVM 219
+ L + S+V + F I N ++ + + S ++ F P + E+++
Sbjct: 147 DILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206
Query: 220 SSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
+ R L + + + L++ GD RRA+ L+ + +
Sbjct: 207 TKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 2e-08
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 29/171 (16%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142
HM F G PGTGKTT AL +A L + K ++ + D G + T KT +
Sbjct: 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR 128
Query: 143 GSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFICN 193
G ++ +DEA + ++A L + ME +
Sbjct: 129 AMG-----------GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL-VVILAG 176
Query: 194 YISRIIEPLASR-------CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAE 237
Y R+ S F S+E + H+ +++ + E
Sbjct: 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPE 227
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANC-----PHMLFYGPPGT 93
+ P V+ RPK + + QE V + L+ LE A H+L GPPG
Sbjct: 3 EFLTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGL 62
Query: 94 GKTTTALAIAHQL 106
GKTT A IA +L
Sbjct: 63 GKTTLAHIIASEL 75
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 2e-07
Identities = 41/227 (18%), Positives = 73/227 (32%), Gaps = 30/227 (13%)
Query: 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF---GPELYKSRVLELNASD 123
+ VL L + L YG GTGKT A + +L + + +NA
Sbjct: 29 RRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88
Query: 124 DRGINVVRTKI----------KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT----- 168
V + I + V + II+LDE D +
Sbjct: 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGG 148
Query: 169 EDAQNALRRTMETYSKVTRFFFIC-----NYISRIIEPLASRCAKFR--FKPLSEE---- 217
+D + R + + ++ + + S + F P +
Sbjct: 149 QDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRD 208
Query: 218 VMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
++ +R N L+ D + L++ GD RRA+ L+ A +
Sbjct: 209 ILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 5e-07
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 35 DEVKRKMAPVLQSSQPWVEK-YRPKQVKDVAHQEEVVRVLTNTLETANC-----PHMLFY 88
+ + R + S E RP QE + + L + A H+LF
Sbjct: 2 NAMDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFS 61
Query: 89 GPPGTGKTTTALAIAHQL 106
GP G GKTT A I++++
Sbjct: 62 GPAGLGKTTLANIISYEM 79
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETANC-----PHMLFYGPPGTGKTTTALAIAHQL 106
RPK + + QE + + L LE A H+L +GPPG GKTT A IAH+L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 3e-06
Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 32 KSEDEVKRKMAPVLQSSQPWVEK-YRPKQVKDVAHQEEVVRVLTNTLETANCP-----HM 85
KS + +R + E + + QE +E +
Sbjct: 7 KSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAV 66
Query: 86 LFYGPPGTGKTTTALAIAHQL 106
L GPPGTGKT ALAIA +L
Sbjct: 67 LLAGPPGTGKTALALAIAQEL 87
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Length = 343 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 24/175 (13%), Positives = 47/175 (26%), Gaps = 8/175 (4%)
Query: 156 YKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAK 208
+ ++L ++ L N + + LA+R +
Sbjct: 77 RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQ 136
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS- 267
+ + + V + L LD A L +G+L L+ + L+
Sbjct: 137 VTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGK 196
Query: 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLF 322
+T + G A + + EG +LL L
Sbjct: 197 LTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQ 251
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Length = 377 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 34/164 (20%), Positives = 56/164 (34%), Gaps = 32/164 (19%)
Query: 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140
LF GP +GKTT A A+ G + L +N DR + I F V
Sbjct: 170 RY--WLFKGPIDSGKTTLAAALLELCGG------KALNVNLPLDRLNFELGVAIDQFLVV 221
Query: 141 ---AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR------FFFI 191
G+G P ++ D++ + +++ +E R
Sbjct: 222 FEDVKGTGGESRDLPSGQG----INNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVT 277
Query: 192 CNYISRIIEPLASRCAK---FRFKP-------LSEEVMSSRVLH 225
N + + L +R K FR K SE ++ R++
Sbjct: 278 MN-EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQ 320
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 7/33 (21%)
Query: 86 LFYGPPGTGKTTTALAIAHQL---F----GPEL 111
LFYGPPG GKT A AIA++ F GPEL
Sbjct: 53 LFYGPPGCGKTLLAKAIANECQANFISIKGPEL 85
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-05
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 86 LFYGPPGTGKTTTALAIAHQL---F----GPEL 111
L GPPG GKT A A+A++ F GPEL
Sbjct: 48 LLAGPPGCGKTLLAKAVANESGLNFISVKGPEL 80
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ + R + + +G G GKT AIA++L
Sbjct: 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL 78
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPP 91
+ E + ++ + + K + V QE V V+ H+L G P
Sbjct: 12 LAPREYGESLELGIEFTTTEEIEVPEKLIDQVIGQEHAVEVIK--TAANQKRHVLLIGEP 69
Query: 92 GTGKTTTALAIAHQLFGPELY 112
GTGK+ A+A L L
Sbjct: 70 GTGKSMLGQAMAELLPTETLE 90
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 86 LFYGPPGTGKTTTALAIAHQ-------LFGPEL 111
L YGPPGTGKT A A+A + + G EL
Sbjct: 55 LLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 37/157 (23%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-------DRGINVVRTKIKTF 137
+ F G PG GKT A+A ++ E R + D +KT
Sbjct: 41 LTFVGSPGVGKTHLAVATLKAIY--EKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV 98
Query: 138 AAVAVGSGQRRGGYPCPPYKIIILDE--ADSMTEDAQNAL-----RRTMETYSKVTRFFF 190
+++LD+ ++ +++ + + R Y+ +
Sbjct: 99 LN----------------SPVLVLDDLGSERLSDWQRELISYIITYR----YNNLKSTII 138
Query: 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
NY + E + R + L E V+ S++ +
Sbjct: 139 TTNYSLQREEESSVRISADLASRLGENVV-SKIYEMN 174
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106
+ +A + YG G GK+ A+AH+L
Sbjct: 138 SAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 85 MLFYGPPGTGKTTTALAIAHQ 105
+L YGPPGTGK+ A A+A +
Sbjct: 54 ILLYGPPGTGKSYLAKAVATE 74
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 100.0 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 100.0 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 100.0 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 100.0 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 100.0 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 100.0 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 100.0 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 100.0 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 100.0 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 100.0 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 100.0 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 100.0 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.97 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.97 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.95 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.94 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.93 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.92 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.91 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.91 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.9 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.89 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.88 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.87 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.87 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.86 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.86 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.85 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.84 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.84 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.84 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.84 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.83 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.83 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.83 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.83 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.82 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.82 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 99.82 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.82 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.81 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.81 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.81 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 99.79 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 99.79 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.79 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.79 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 99.78 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 99.77 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 99.77 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.77 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.76 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.76 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.76 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.75 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.74 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.74 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.74 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.73 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.73 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.72 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.71 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.7 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.7 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.69 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.69 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.68 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.68 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.67 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.65 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.65 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.65 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.57 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.57 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.55 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.54 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.53 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.52 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.52 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 99.47 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.46 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.45 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.45 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.37 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 99.36 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.36 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.33 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 99.31 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.28 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 99.23 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 99.14 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 99.1 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.09 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 99.07 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 99.04 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 99.01 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.94 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 98.71 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.7 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.6 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 98.5 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.46 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.46 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.4 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.28 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 98.23 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 98.18 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 97.99 | |
| 3ctd_A | 213 | Putative ATPase, AAA family; structural genomics, | 97.96 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.91 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 97.89 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 97.84 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.84 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.69 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.68 | |
| 2r9g_A | 204 | AAA ATPase, central region; structural genomics, P | 97.65 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 97.65 | |
| 3bge_A | 201 | Predicted ATPase; structural genomics, predicted A | 97.63 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.62 | |
| 1jql_B | 140 | DNA polymerase III, delta subunit; processivity cl | 97.6 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.59 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.53 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.49 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.43 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.36 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 97.34 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.33 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 97.33 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 97.29 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.28 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.27 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 97.26 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 97.25 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.21 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.2 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 97.2 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 97.19 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.14 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.12 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.11 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 97.07 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.07 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 97.03 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.03 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.02 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.01 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.99 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.98 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.98 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.97 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.96 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 96.95 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.95 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.94 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.94 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 96.93 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.92 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.91 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.84 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 96.82 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 96.81 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 96.79 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.79 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.79 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 96.78 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.76 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.76 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 96.75 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.73 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 96.71 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.7 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.66 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.63 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.62 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 96.6 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.6 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 96.59 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 96.58 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.58 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.58 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 96.57 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.57 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.54 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.53 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.53 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.52 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.51 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.5 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.49 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.48 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 96.46 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.45 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.45 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.44 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 96.44 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 96.43 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.4 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.4 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 96.4 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.38 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.38 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.38 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 96.38 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 96.37 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.36 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.36 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.35 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.33 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.32 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.31 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.29 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.29 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.29 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 96.29 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.28 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.27 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.27 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.26 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.24 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.24 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.23 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.23 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 96.22 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.22 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.21 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.21 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 96.19 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.19 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.19 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 96.19 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 96.18 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.18 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.17 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.16 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 96.15 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.15 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.14 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.14 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 96.12 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 96.11 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.1 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.08 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.07 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.05 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 96.04 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.04 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.03 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.02 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.01 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 96.0 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.0 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.99 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 95.99 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.99 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 95.98 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.98 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 95.96 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.95 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.94 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.93 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.93 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.93 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 95.92 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.92 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 95.91 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.91 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.9 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.9 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.9 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 95.89 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 95.89 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.88 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 95.87 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 95.87 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.87 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.86 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 95.85 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.85 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 95.84 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.84 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.84 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 95.84 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.83 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.83 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.82 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.82 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 95.82 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.8 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 95.79 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.79 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.79 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.78 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.76 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.75 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.73 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.73 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.72 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 95.7 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.68 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.68 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 95.67 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.66 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.65 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.63 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.61 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.61 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 95.57 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 95.54 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.53 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.52 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 95.52 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.51 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.51 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.5 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 95.49 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.46 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.46 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.46 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.45 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.45 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.45 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.44 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 95.43 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.42 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.41 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.39 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.38 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.37 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.36 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.36 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.35 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.35 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.35 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.33 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.33 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.32 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.32 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.29 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.29 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.28 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 95.28 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.28 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 95.27 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.27 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.27 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.26 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 95.26 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.25 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 95.25 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 95.24 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.22 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.22 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 95.21 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.21 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.2 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.18 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.18 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.16 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.16 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.16 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.15 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 95.14 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.14 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.13 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.13 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 95.12 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.11 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.08 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.07 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.07 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 95.04 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 95.04 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 95.03 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 95.01 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 95.01 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.0 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 94.98 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.97 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.95 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.94 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.92 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.92 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.9 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.88 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.88 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 94.86 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.85 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.83 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.8 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.79 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.78 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 94.77 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 94.75 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 94.75 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 94.71 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 94.71 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 94.7 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.68 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.67 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.64 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.63 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 94.63 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.63 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 94.62 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 94.62 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 94.62 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.61 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 94.6 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 94.59 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.58 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.56 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.55 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 94.54 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.52 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 94.49 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 94.46 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 94.46 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.44 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.41 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 94.39 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.38 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 94.38 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 94.37 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 94.36 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 94.29 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.29 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 94.28 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.28 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 94.25 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.22 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.21 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.21 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 94.2 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 94.19 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 94.17 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 94.16 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.14 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.12 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 94.1 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 94.1 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 94.1 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 94.07 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 94.05 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 94.03 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 94.01 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.99 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 93.98 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.94 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 93.92 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.91 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 93.87 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 93.86 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 93.85 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 93.83 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 93.81 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 93.81 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 93.8 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 93.79 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 93.77 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 93.76 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 93.72 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 93.69 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.67 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 93.67 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 93.65 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.65 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 93.64 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 93.62 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 93.58 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 93.57 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 93.57 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 93.56 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 93.53 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 93.53 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 93.53 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 93.5 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 93.5 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 93.46 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 93.45 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 93.41 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 93.4 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 93.39 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 93.39 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 93.37 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 93.36 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 93.36 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 93.35 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 93.32 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 93.3 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 93.27 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 93.23 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 93.21 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 93.19 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 93.19 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 93.17 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 93.15 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 93.14 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 93.14 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 93.13 |
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=340.68 Aligned_cols=319 Identities=34% Similarity=0.621 Sum_probs=285.9
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
...||.+||+|..|++++|++++++.|..++..++.+|++|+||+|+|||++++++++.+.+... ...+.++++++..+
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~ 89 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRG 89 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCS
T ss_pred cCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCccccc
Confidence 46799999999999999999999999999999999999999999999999999999999876542 34678888887777
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
++.+++.+..+...... +. ++++++||||+|.++.+++++|++++|+++..+.||+++|.+.++.++++|||
T Consensus 90 ~~~ir~~i~~~~~~~~~-------~~-~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 90 IDVVRNQIKDFASTRQI-------FS-KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHTHHHHHHHBCCS-------SS-CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHHHHHHhhccc-------CC-CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 88888777666532111 11 25799999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC----CCChhhHhhhhCCCCH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----SITSKDLISVSGVIPP 282 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~----~It~~~v~~~~~~~~~ 282 (382)
..+.|.+++.+++..++..+++.+++.++++++..+++.++||+|++++.++.++...+. .||.++|.++++...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~ 241 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRP 241 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCH
Confidence 999999999999999999999989999999999999999999999999999988765432 6999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHhhcCCChHHHH
Q 016800 283 EVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDIS-DEQQARICKCLAEVDKCLVDGADEYLQL 360 (382)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~~l~l 360 (382)
..++++++++..+++.+++.++.+++. .|+++..++..+.++++.. .++ ...+.++++.+.+++++++.|+|+.++|
T Consensus 242 ~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l 320 (340)
T 1sxj_C 242 SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY-ELQNEETRVHLLTKLADIEYSISKGGNDQIQG 320 (340)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 999999999999999999999999998 9999999999999888763 466 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 016800 361 LDVASNVIRAVCNMP 375 (382)
Q Consensus 361 ~~l~~~l~~~~~~~~ 375 (382)
+.|+++++++++..+
T Consensus 321 e~l~~~l~~~~~~~~ 335 (340)
T 1sxj_C 321 SAVIGAIKASFENET 335 (340)
T ss_dssp HHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHhhhcC
Confidence 999999999887654
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-44 Score=330.93 Aligned_cols=324 Identities=48% Similarity=0.814 Sum_probs=282.5
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.+..||.++|+|.+|++++|++++++.+..++..++.+|++|+||||+|||++++++++.+.++......+.++++.+..
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 56689999999999999999999999999999999888899999999999999999999986543334567888888766
Q ss_pred chHHHHHHHHHHHHhhhcCCCC--CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 126 GINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
+...+++.+..+.......... ......+++++|+|||++.++...++.|++++++++..++||+++|.+..+.++++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 7777776666555432111000 00011236689999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-----CCChhhHhhhhC
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-----SITSKDLISVSG 278 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~-----~It~~~v~~~~~ 278 (382)
+||..+.|++++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.+.+. .||.++|.++++
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999988876532 799999999999
Q ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHH
Q 016800 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYL 358 (382)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l 358 (382)
......++++++++..++...++.++++++..|+++..++..+.+++.....++...+..++..+++++++++.|.|+.+
T Consensus 262 ~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l 341 (353)
T 1sxj_D 262 VVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHI 341 (353)
T ss_dssp CCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence 88889999999999999999999999999999999999999999988877689999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 016800 359 QLLDVASNVIR 369 (382)
Q Consensus 359 ~l~~l~~~l~~ 369 (382)
+|+.|+++++.
T Consensus 342 ~l~~~~~~~~~ 352 (353)
T 1sxj_D 342 QLLNLLVKISQ 352 (353)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999975
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=324.36 Aligned_cols=313 Identities=44% Similarity=0.742 Sum_probs=278.2
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
...||.++|+|.+|++++|+++.++.+.+++..++.+|++|+||+|+|||++++++++.+.++.. ...++++++++..+
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERG 81 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-HHHCEEEETTSTTC
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-cCCeEEEeCccccC
Confidence 46799999999999999999999999999999999889999999999999999999999876542 34577888877656
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
.+.+++.+..+..... +..+++++++|||+|.++.+.++.|++++++++.+++||++++.+.++.+++++||
T Consensus 82 ~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 82 IDVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp TTTSSHHHHHHHHSCC--------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred hHHHHHHHHHHHhcCC--------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 5556555555542211 11126799999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHHH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~~ 286 (382)
..+.|++++.+++..++..++.++|+.+++++++.++..++||+|.+++.++.++.. +..||.++|.++++...+..++
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~ 232 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEEMT 232 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS-SSCBCHHHHHHHTTCCCHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999988765 5689999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHH
Q 016800 287 GLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVAS 365 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~ 365 (382)
++++++..+++.+++.++.+++. .|+++..++..+.++++.. .++...+.+++..+.+++++++.|+++.++++.|++
T Consensus 233 ~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l-~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~ 311 (319)
T 2chq_A 233 ELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM-PIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLA 311 (319)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS-CSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999997 9999999999998887653 488889999999999999999999999999999999
Q ss_pred HHHHH
Q 016800 366 NVIRA 370 (382)
Q Consensus 366 ~l~~~ 370 (382)
+++++
T Consensus 312 ~l~~~ 316 (319)
T 2chq_A 312 YLSTL 316 (319)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99865
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=321.53 Aligned_cols=316 Identities=42% Similarity=0.690 Sum_probs=280.7
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
....||.++|+|.+|++++|+++.++.+..++..++.+|++|+||+|+|||++++++++.+.++.. ...++++++.+..
T Consensus 10 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~-~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 10 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW-RHNFLELNASDER 88 (327)
T ss_dssp HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH-HHHEEEEETTCHH
T ss_pred ccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-cCceEEeeccccC
Confidence 356799999999999999999999999999999999989999999999999999999999865432 2457788887765
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 205 (382)
+.+.++..+..+....... .+++++|+|||+|.++.+.++.|++++++++.+++||++++.+..+.+++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--------~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 89 GINVIREKVKEFARTKPIG--------GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHTTHHHHHHHHHSCCGG--------GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred chHHHHHHHHHHHhhCCcC--------CCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 5566666555554322111 12678999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHH
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~ 285 (382)
|..+.|+|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.. ...||.++|..+++...+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~i 239 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVASRARPEDI 239 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSEECHHHHHHHTTCCCHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999987754 457999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHH
Q 016800 286 EGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~ 364 (382)
+++++++..+++..++..+++++ ..|.++..++..+.++++.. .++...+.+++..+.+++++++.|.|+.++|+.|+
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~-~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~ 318 (327)
T 1iqp_A 240 REMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-PIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALL 318 (327)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS-SSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999998 89999999999998887653 58999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 016800 365 SNVIRAVC 372 (382)
Q Consensus 365 ~~l~~~~~ 372 (382)
++++++.+
T Consensus 319 ~~l~~~~~ 326 (327)
T 1iqp_A 319 AQFTLIGK 326 (327)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhhc
Confidence 99998754
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=315.40 Aligned_cols=302 Identities=24% Similarity=0.340 Sum_probs=258.8
Q ss_pred ccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 45 ~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.....||.+||+|.+|++++|++++++.+.+++..++.++ +|++||||+|||++++++++.+ ...++++++++
T Consensus 10 ~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~ 83 (324)
T 3u61_B 10 NEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSD 83 (324)
T ss_dssp CTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTT
T ss_pred CcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEcccc
Confidence 3567899999999999999999999999999999999888 6888889999999999999987 46788899876
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHHHhcCCceEEEEeecCccccchhh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 202 (382)
. +.+.++..+..+....... +++++++|||+|.++ .+.++.|++++++++.++.||+++|.+.++.+++
T Consensus 84 ~-~~~~i~~~~~~~~~~~~~~---------~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 84 C-KIDFVRGPLTNFASAASFD---------GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp C-CHHHHHTHHHHHHHBCCCS---------SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred c-CHHHHHHHHHHHHhhcccC---------CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 4 4677777676655442222 267899999999999 9999999999999999999999999999999999
Q ss_pred hcccceEEecCCCHHH-------HHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHh
Q 016800 203 ASRCAKFRFKPLSEEV-------MSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLI 274 (382)
Q Consensus 203 ~sr~~~i~~~~~~~~~-------~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~ 274 (382)
+|||.++.|++|+.++ +..++..++..+++.+++ ++++.+++.++||+|.+++.|+.++ .++.||.+++.
T Consensus 154 ~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~--~~~~i~~~~v~ 231 (324)
T 3u61_B 154 QSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS--SKGVLDAGILS 231 (324)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--GGTCBCC----
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--ccCCCCHHHHH
Confidence 9999999999999887 456677778889999988 9999999999999999999999887 35679999999
Q ss_pred hhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCC
Q 016800 275 SVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGA 354 (382)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 354 (382)
.+... ...++++++++..+++.+++.++.+++. ++..++..+..++.. .++...+.++++.+++++++++.|.
T Consensus 232 ~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~--~~~~~~l~~i~~~l~~~d~~l~~g~ 304 (324)
T 3u61_B 232 LVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYS--RVTPQSIIRMYEIVGENNQYHGIAA 304 (324)
T ss_dssp ----------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 88765 5578889999999999999999999977 899999999888776 5899999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHH
Q 016800 355 DEYLQLLDVASNVIRAV 371 (382)
Q Consensus 355 ~~~l~l~~l~~~l~~~~ 371 (382)
++.++|+.|+++++..+
T Consensus 305 ~~~~~le~~~~~~~~~~ 321 (324)
T 3u61_B 305 NTELHLAYLFIQLACEM 321 (324)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999999764
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=311.93 Aligned_cols=315 Identities=35% Similarity=0.574 Sum_probs=278.7
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
....||.++|+|..|++++|+++.++.+.+++..++.+|++|+||+|+|||++++.+++.+.++.. ...++++++.+..
T Consensus 6 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 6 SLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-ADGVLELNASDDR 84 (323)
T ss_dssp -CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-HHHEEEECTTSCC
T ss_pred cccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-cCCEEEecCcccc
Confidence 356799999999999999999999999999999999989999999999999999999999865432 3457788888766
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 205 (382)
+.+.+++.+..+..... .+..+++++|||||+|.++.+.++.|++++++++.++.||++++.+.++.+++++|
T Consensus 85 ~~~~i~~~~~~~~~~~~-------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 85 GIDVVRNQIKHFAQKKL-------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp SHHHHHTHHHHHHHBCC-------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred ChHHHHHHHHHHHhccc-------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 77777776666542211 11112578999999999999999999999999999999999999999999999999
Q ss_pred cceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHHHH
Q 016800 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (382)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~~~ 285 (382)
|..+.|++++.+++..++..++..+|+.+++++++.+++.++||+|.+++.++..+.. ...|+.++|.++++......+
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~i 236 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-HGLVNADNVFKIVDSPHPLIV 236 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HSSBCHHHHHHHHTSCCHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988754 367999999999999888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHH
Q 016800 286 EGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVA 364 (382)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~ 364 (382)
++++++ ++..+++.++.+ ++..|+++..++..+..++.....++...+.++++.+.+++++++.|+|+.++++.|+
T Consensus 237 ~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~ 313 (323)
T 1sxj_B 237 KKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASML 313 (323)
T ss_dssp HHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 888877 889999999998 8889999999999998887764448999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 016800 365 SNVIRAVC 372 (382)
Q Consensus 365 ~~l~~~~~ 372 (382)
++++++.+
T Consensus 314 ~~~~~~~~ 321 (323)
T 1sxj_B 314 AKIHKLNN 321 (323)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhcc
Confidence 99998765
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=319.00 Aligned_cols=320 Identities=28% Similarity=0.461 Sum_probs=256.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHH-HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC--------------
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-------------- 113 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l-~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~-------------- 113 (382)
.||++||||.+|++++|++++++.+.+++ ..++.+|++|+||+|+||||+++++++.+.++....
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 48999999999999999999999999999 888888999999999999999999999877654211
Q ss_pred ---------CceEEeecCCCcch--HHHHHHHHHHHHhhhcCCCC-CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHh
Q 016800 114 ---------SRVLELNASDDRGI--NVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (382)
Q Consensus 114 ---------~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~ 181 (382)
..++++++.+.... ..+++.+..+.......... ..+ ..++++++||||++.++..+++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 12344544332111 13455554443211100000 000 012778999999999999999999999999
Q ss_pred cCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHH
Q 016800 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYLQGA 260 (382)
Q Consensus 182 ~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~gdlr~a~~~l~~~ 260 (382)
++.++.||++|+.+..+.++++|||..++|++++.+++..++..+++++|+.++ +++++.+++.++||+|.+++.++.+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 998999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHhcCCCCChhhHhhhhCCCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHH
Q 016800 261 ARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGD----FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQ 336 (382)
Q Consensus 261 ~~~~~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~ 336 (382)
+.+.+..||.+.+ +........++++++++..++ +..+...+.+++..|+++..++..+..++.....++...+
T Consensus 241 ~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l 318 (354)
T 1sxj_E 241 ALNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNK 318 (354)
T ss_dssp HHTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHH
T ss_pred HHhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHH
Confidence 8765446776554 222223456788999988754 4556667778888999999999998887766556999999
Q ss_pred HHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 337 ARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 337 ~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
.++++.+++++++++.|.+++++|+.++++++.++
T Consensus 319 ~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 353 (354)
T 1sxj_E 319 SSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353 (354)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999875
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=305.32 Aligned_cols=314 Identities=22% Similarity=0.288 Sum_probs=271.8
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------- 112 (382)
+..||.++|+|..|++++|+++.++.+..++..++.+| ++|+||+|+|||++++.+++.+.|....
T Consensus 2 ~~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp -CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CcHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 35789999999999999999999999999999999888 8999999999999999999998764321
Q ss_pred -----CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceE
Q 016800 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (382)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 187 (382)
...++++++....+.+.++..+..+..... .++++||||||+|.++.+.++.|++++++++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~ 151 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA----------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCS----------SSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEE
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccc----------cCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceE
Confidence 113456665544444555554444321111 12678999999999999999999999999999999
Q ss_pred EEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCC
Q 016800 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~ 267 (382)
||++++.+.++.+++++||..+.|++++.+++..++..+++++|+.++++++..+++.++||+|.+.++++++..+.++.
T Consensus 152 ~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 231 (373)
T 1jr3_A 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 (373)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTC
T ss_pred EEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777788
Q ss_pred CChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------
Q 016800 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET------------------- 328 (382)
Q Consensus 268 It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~------------------- 328 (382)
||.++|.++++......++++++++..++...++.++..+...|.++..++..+..+++..
T Consensus 232 i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~ 311 (373)
T 1jr3_A 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIEL 311 (373)
T ss_dssp BCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHH
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHH
Confidence 9999999999999889999999999999999999999999999999988776665544321
Q ss_pred ------CCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 329 ------EDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 329 ------~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
..++...+..++..+.+++..++.+.|+++.+|.++++++..
T Consensus 312 ~~~~~a~~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~ 359 (373)
T 1jr3_A 312 RMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 (373)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 357888899999999999999999999999999999999865
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=277.10 Aligned_cols=299 Identities=21% Similarity=0.290 Sum_probs=248.3
Q ss_pred chhhhhcCCCCCCcccCcHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.||.++|||.+|++++|+++++ +.+...+..++.++++|+||||||||++|+.+++.+ ...+..+++.. .
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~------~~~f~~l~a~~-~ 86 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA------NADVERISAVT-S 86 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT------TCEEEEEETTT-C
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh------CCCeEEEEecc-C
Confidence 6999999999999999999999 899999999999889999999999999999999987 34567777765 3
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee--cCccccchhhh
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLA 203 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~--~~~~~l~~~l~ 203 (382)
+...++..+......... +++.+|||||+|.++...++.|++.+|+. .+.+|+++ |....+.+++.
T Consensus 87 ~~~~ir~~~~~a~~~~~~----------~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 87 GVKEIREAIERARQNRNA----------GRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALL 154 (447)
T ss_dssp CHHHHHHHHHHHHHHHHT----------TCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHH
T ss_pred CHHHHHHHHHHHHHhhhc----------CCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHh
Confidence 566666666554433221 16789999999999999999999999983 45667666 44467899999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC------CCCCh
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNE-------EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG------SSITS 270 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~------~~It~ 270 (382)
|||.++.|++++.+++..++.+.+.. .++.+++++++.|++.++||+|.+++.|+.++..+. ..||.
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~ 234 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKP 234 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCH
Confidence 99999999999999999999999886 556799999999999999999999999999988763 26999
Q ss_pred hhHhhhhCCC----------CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 016800 271 KDLISVSGVI----------PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARIC 340 (382)
Q Consensus 271 ~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 340 (382)
++|.+++... +++.+..+++++..++.+.++.|+.+|+..|++|..|.+++.....+ +++.+....+.
T Consensus 235 e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~e--dig~a~p~a~~ 312 (447)
T 3pvs_A 235 ELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASE--DVGNADPRAMQ 312 (447)
T ss_dssp HHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--TTGGGCTHHHH
T ss_pred HHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cccCCChhHHH
Confidence 9999999765 34678889999999999999999999999999999999999887766 78887777777
Q ss_pred HHHHHHhhHhhcCCCh-HHHHHHHHHHHH
Q 016800 341 KCLAEVDKCLVDGADE-YLQLLDVASNVI 368 (382)
Q Consensus 341 ~~~~~~~~~l~~g~~~-~l~l~~l~~~l~ 368 (382)
...+..+.....|.++ ++.|...++-|+
T Consensus 313 ~~~~~~~~~~~~g~pe~~~~l~~~~~~la 341 (447)
T 3pvs_A 313 VAIAAWDCFTRVGPAEGERAIAQAIVYLA 341 (447)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7778888888889754 677777766665
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=268.19 Aligned_cols=280 Identities=17% Similarity=0.149 Sum_probs=227.9
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCC-CcchHHHHHHHHHHHHhhh
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAV 142 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 142 (382)
||+++++.|.+.+++++.|++||+||||+|||+++.++++... |.. .+.++.++++.+ ..+++.+++.+..+...+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEGENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhc-cCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc
Confidence 7889999999999999966699999999999999999998632 221 345788888864 6788889887665543222
Q ss_pred cCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCHHHHHHH
Q 016800 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSR 222 (382)
Q Consensus 143 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 222 (382)
. ++++|+||||+|.|+.+++|+|+++||+|+++++||++|+++.++.++|+|| .++|++++.+++..|
T Consensus 80 ~----------~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~ 147 (305)
T 2gno_A 80 L----------YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDL 147 (305)
T ss_dssp S----------SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHH
T ss_pred c----------CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHH
Confidence 1 2789999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-------CCCCChhhHhhhhCCCCHH--HHHHHHHHHh
Q 016800 223 VLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-------GSSITSKDLISVSGVIPPE--VVEGLFAVCR 293 (382)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-------~~~It~~~v~~~~~~~~~~--~~~~~~~~~~ 293 (382)
|.+++ + ++++++ ..++||+|.+++.++...... ...-+.++|..+++...+. .++++++++.
T Consensus 148 L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~ 218 (305)
T 2gno_A 148 VKEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFS 218 (305)
T ss_dssp HHHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 98877 3 566655 557999999999886432210 1111467888888877744 8999999999
Q ss_pred cCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhc---CCChHHHHHHHHHHHH
Q 016800 294 SGDFDLANKEVNNIIA--EGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVD---GADEYLQLLDVASNVI 368 (382)
Q Consensus 294 ~~~~~~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---g~~~~l~l~~l~~~l~ 368 (382)
+++..+++..+++|+. .|+++..++..+++.+.....+. ..+.++.++.+++++.. |.++.++|+.+++.++
T Consensus 219 ~~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~~~~~~~---~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~ 295 (305)
T 2gno_A 219 KVESKEFFALFDQVTNTITGKDAFLLIQRLTRIILHENTWE---SVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHR 295 (305)
T ss_dssp HSCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHTSCCC---SHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhchhh---hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999998 89999999998888877533333 23456688888888888 9999999999999998
Q ss_pred H
Q 016800 369 R 369 (382)
Q Consensus 369 ~ 369 (382)
.
T Consensus 296 ~ 296 (305)
T 2gno_A 296 E 296 (305)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-34 Score=261.31 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=219.2
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceEEeecC---C
Q 016800 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS---D 123 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------------~~~~~~~~~~---~ 123 (382)
+++.++.+.+.+++++.+| +||+||+|+|||++|+++++.+.|.... ..++..+++. .
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 6788899999999999999 9999999999999999999999886531 2456777764 4
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhh
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 203 (382)
..+++.+++.+..+...+. .++++|+||||+|.|+.+++|+|++++|+|+.++.||++|+.+.+++++|+
T Consensus 87 ~~~i~~ir~l~~~~~~~~~----------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHAR----------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCT----------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred CCCHHHHHHHHHHHhhccc----------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 5677888876655432221 127899999999999999999999999999999999999999999999999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhCCCCHH
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPE 283 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~~~~~~ 283 (382)
|||+.+.|++++.+++.+||..++ .++++++..+++.++||+|.++++++..... ...++.+.+..+... .
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~-~~~~~~~~~~~~~~~---~ 227 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQ-ARETLCQALAYSVPS---G 227 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHH-HHHHHHHHHHHHHHH---C
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHH-HHHHHHHHHHHHHhC---h
Confidence 999999999999999999997654 5789999999999999999999999876532 123444555554431 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH----HHHHcCCCH-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhh--c
Q 016800 284 VVEGLFAVCRSGDFDLANKEVN----NIIAEGYPA-----SLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLV--D 352 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~----~l~~~g~~~-----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 352 (382)
.+..+++.+.+.+....+.++. +++...... .+....+..... .++...+.++++.+.+++++++ .
T Consensus 228 ~~~~~~~~l~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~---~~~~~~l~~~~~~l~~~~~~l~~~~ 304 (334)
T 1a5t_A 228 DWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELAN---HLSPSRLQAILGDVCHIREQLMSVT 304 (334)
T ss_dssp CCGGGHHHHCSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 1224556666667766655544 444322111 112223333222 4899999999999999999999 8
Q ss_pred CCChHHHHHHHHHHHHHH
Q 016800 353 GADEYLQLLDVASNVIRA 370 (382)
Q Consensus 353 g~~~~l~l~~l~~~l~~~ 370 (382)
|+|+++++|.+++++++.
T Consensus 305 ~~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 305 GINRELLITDLLLRIEHY 322 (334)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999876
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=257.63 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=233.6
Q ss_pred HHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCC
Q 016800 73 LTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (382)
Q Consensus 73 l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (382)
+.+.++ ++.+| +||+||+|+||++.+..+++.+.+.+.....+++++. . ..+++.+......+..+
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~l~~~~~~~plf~------- 75 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFSLCQAMSLFA------- 75 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--T---CCHHHHHHHHHHHHHCC-------
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--C---CCHHHHHHHhcCcCCcc-------
Confidence 445555 45555 9999999999999999999988765432223444543 2 23344333333333332
Q ss_pred CCCCcEEEEEeCCCC-CCHHHHHHHHHHHHhcCCceEEEEeecCc------cccchhhhcccceEEecCCCHHHHHHHHH
Q 016800 152 PCPPYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 152 ~~~~~~vliiDe~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 224 (382)
+++||+|||++. ++.+++++|++++|+|++++.||++++.. .++.++|.|||.+++|.+++.+++..|+.
T Consensus 76 ---~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 76 ---SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp ---SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred ---CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 789999999999 99999999999999999999999998763 46889999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 016800 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303 (382)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (382)
++++++|+.++++++..+++.++||++.+.+.+++++.+. ++.||.++|.++++......++++++++..++..+++.+
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~ 232 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHI 232 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999876 568999999999887777789999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHh---------------------------------cCCCCHHHHHHHHHHHHHHhhHh
Q 016800 304 VNNIIAEGYPASLLLSQLFDVVVE---------------------------------TEDISDEQQARICKCLAEVDKCL 350 (382)
Q Consensus 304 l~~l~~~g~~~~~i~~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~l 350 (382)
+.++...|.+|..++..+.++++. ...++...+.+++..+.+++..+
T Consensus 233 l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~l 312 (343)
T 1jr3_D 233 LQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTL 312 (343)
T ss_dssp HTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999988899998877765444432 13477888999999999999999
Q ss_pred hcCC--ChHHHHHHHHHHHHH
Q 016800 351 VDGA--DEYLQLLDVASNVIR 369 (382)
Q Consensus 351 ~~g~--~~~l~l~~l~~~l~~ 369 (382)
+.|. ++++.||.++++++.
T Consensus 313 K~~~~~~~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 313 KQDYGQSVWAELEGLSLLLCH 333 (343)
T ss_dssp HHSSCSCHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHHHHcC
Confidence 9984 788999999999875
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=219.98 Aligned_cols=222 Identities=52% Similarity=0.889 Sum_probs=191.2
Q ss_pred CCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 47 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
...||.++|+|..|++++|+++.++.+..++..+..++++|+||+|+|||++++.+++.+.+.. ....++.+++....+
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERG 81 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTC
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccC
Confidence 5679999999999999999999999999999998887899999999999999999999875443 234567788777666
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
...+...+..+..... ...+++.+|+|||++.++.+.++.|++++++++..+.+|++++.+..+.+++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 82 IDVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHHHHHHHHTSCC--------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred hHHHHHHHHHHhcccC--------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 6666655555442211 11226789999999999999999999999998889999999999999999999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhC
Q 016800 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~ 278 (382)
..+.|++++.+++..++..++...+..++++++..+++.++||+|.+++.++.++..+ ..||.++|+++++
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~-~~I~~~~v~~~~~ 224 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG-EVVDADTIYQITA 224 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SCBCHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-ceecHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988764 7899999988765
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=215.93 Aligned_cols=223 Identities=26% Similarity=0.377 Sum_probs=181.9
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------ 112 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------ 112 (382)
.+..||.++|+|..|++++|++..++.+..++..++.++ ++|+||+|+|||++++.+++.+.+....
T Consensus 8 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 8 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp ---CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred hHHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 356799999999999999999999999999999988776 8999999999999999999988653211
Q ss_pred ------CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCce
Q 016800 113 ------KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (382)
Q Consensus 113 ------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~ 186 (382)
...+..++.........++..+..+... ...+++.+|+|||+|.++.+.++.|++.+++++..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~ 157 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV 157 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCS----------CSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTE
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhc----------hhcCCceEEEEECcccccHHHHHHHHHHHhcCCCce
Confidence 0123444444333333333332221100 011256899999999999999999999999988889
Q ss_pred EEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 016800 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~ 266 (382)
.+|++++....+.+++.+|+..+.|++++.+++.+++..++...+..+++++++.+++.++|++|.+.++++.+.....+
T Consensus 158 ~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~ 237 (250)
T 1njg_A 158 KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG 237 (250)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS
T ss_pred EEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999988876667
Q ss_pred CCChhhHhhhhC
Q 016800 267 SITSKDLISVSG 278 (382)
Q Consensus 267 ~It~~~v~~~~~ 278 (382)
.||.++|+++++
T Consensus 238 ~i~~~~v~~~~~ 249 (250)
T 1njg_A 238 QVSTQAVSAMLG 249 (250)
T ss_dssp SBCHHHHHHHSC
T ss_pred eecHHHHHHHhC
Confidence 899999988764
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=228.44 Aligned_cols=240 Identities=25% Similarity=0.359 Sum_probs=181.8
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcC-----------------CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----------------NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------------~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
....+|++||+|.+|++++|+++.++.+..++... ..+++||+||||+|||++|+++++.+
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-- 101 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-- 101 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--
Confidence 45679999999999999999999999999998751 23459999999999999999999998
Q ss_pred CCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCC-----CCCCCcEEEEEeCCCCCCHHHH---HHHHHHHH
Q 016800 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG-----YPCPPYKIIILDEADSMTEDAQ---NALRRTME 180 (382)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~vliiDe~d~l~~~~~---~~Ll~~le 180 (382)
+..++++++++......+...+........... .... ...+++.||||||+|.++...+ +.|+++++
T Consensus 102 ----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~ 176 (516)
T 1sxj_A 102 ----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVG-YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR 176 (516)
T ss_dssp ----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTT-TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH
T ss_pred ----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHH-HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH
Confidence 467888998876655444333222111000000 0000 0123678999999999976443 78888888
Q ss_pred hcCCceEEEEeecCcc-ccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 016800 181 TYSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (382)
Q Consensus 181 ~~~~~~~~Il~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~ 259 (382)
+... .+|++++... ..++++.+||..+.|++|+.+++..++..++..+++.++++++..|++.++||+|.+++.++.
T Consensus 177 ~~~~--~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 177 KTST--PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp HCSS--CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred hcCC--CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 7543 4666666543 455779999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCChhhHhhhhC---CCCHHHHHHHHHHHhcC
Q 016800 260 AARLFGSSITSKDLISVSG---VIPPEVVEGLFAVCRSG 295 (382)
Q Consensus 260 ~~~~~~~~It~~~v~~~~~---~~~~~~~~~~~~~~~~~ 295 (382)
++.. +..|+.+++.+++. ......++++++.+..+
T Consensus 255 ~~~~-~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~ 292 (516)
T 1sxj_A 255 ISTT-TKTINHENINEISKAWEKNIALKPFDIAHKMLDG 292 (516)
T ss_dssp HHHH-SSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred HHhc-CCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence 7653 57899999887764 33334566777777663
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=203.27 Aligned_cols=210 Identities=18% Similarity=0.217 Sum_probs=165.8
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
.....|.++|+|.+|++++|++..++.+..++.. ...++++|+||||||||++|+++++.+ ...++.++
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~------~~~~~~~~ 87 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM------SANIKTTA 87 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT------TCCEEEEE
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEec
Confidence 4556899999999999999999999999888864 344569999999999999999999987 34567777
Q ss_pred cCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC----------------
Q 016800 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK---------------- 184 (382)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~---------------- 184 (382)
+........+...+.. . +...+|+|||++.++.+.++.|+..+++...
T Consensus 88 ~~~~~~~~~~~~~~~~-------~---------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 88 APMIEKSGDLAAILTN-------L---------SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp GGGCCSHHHHHHHHHT-------C---------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred chhccchhHHHHHHHh-------c---------cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 7654444433333221 1 1557999999999999999999999997531
Q ss_pred --ceEEEEeecCccccchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 185 --VTRFFFICNYISRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 185 --~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
.+.+|.++|....+.+++++|+ ..+.|++|+.+++..++...+...+..+++++++.++..++||+|.+.+.++.+.
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3678889999889999999999 5899999999999999999999999889999999999999999999999999875
Q ss_pred Hhc----CCCCChhhHhhhh
Q 016800 262 RLF----GSSITSKDLISVS 277 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~ 277 (382)
..+ +..|+.+++..++
T Consensus 232 ~~a~~~~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 232 DFADVNDEEIITEKRANEAL 251 (338)
T ss_dssp HHHHHTTCSEECHHHHHHHH
T ss_pred HHHHhhcCCccCHHHHHHHH
Confidence 443 3558877776554
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=201.09 Aligned_cols=223 Identities=21% Similarity=0.262 Sum_probs=167.7
Q ss_pred CCchhhhhcCCCC-CCcccCcHHHHHH---HHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEee
Q 016800 47 SSQPWVEKYRPKQ-VKDVAHQEEVVRV---LTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (382)
Q Consensus 47 ~~~~~~~k~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~ 120 (382)
...++.++++|.. |++++|++..+.. +...+..+..+ ++||+||||+|||++|+++++.+.+. ..++.++
T Consensus 29 ~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~~ 104 (368)
T 3uk6_A 29 RGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAIA 104 (368)
T ss_dssp CSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEEE
T ss_pred hccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCccccc
Confidence 4567789999988 9999999998765 56666777665 59999999999999999999998532 1223333
Q ss_pred cCC-------------------------------------------------------CcchHHHHHHHHHHHHhhhcCC
Q 016800 121 ASD-------------------------------------------------------DRGINVVRTKIKTFAAVAVGSG 145 (382)
Q Consensus 121 ~~~-------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~ 145 (382)
+.. ......++..+..........+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g 184 (368)
T 3uk6_A 105 GSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEG 184 (368)
T ss_dssp GGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhc
Confidence 211 0002233333333222111110
Q ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------------CccccchhhhcccceEEecC
Q 016800 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKP 213 (382)
Q Consensus 146 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~ 213 (382)
.....+.||+|||+|.++.+.++.|++.++++...+ ++++++ .+..+.+++++||..+.|++
T Consensus 185 -----~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~ 258 (368)
T 3uk6_A 185 -----KAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTP 258 (368)
T ss_dssp -----C---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECC
T ss_pred -----cccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecC
Confidence 000013599999999999999999999999887665 444443 35678899999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCC
Q 016800 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ-GDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279 (382)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~-gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~ 279 (382)
|+.+++..++..++...++.+++++++.+++.+. ||+|.++++++.+...+ ...||.++|.+++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999987664 457999998887653
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=193.00 Aligned_cols=206 Identities=22% Similarity=0.268 Sum_probs=164.0
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
|.++|+|.+|++++|++..+..+..++.. ....+++|+||+|||||++|+++++.+. ..+..+++....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~~~ 75 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGPAIE 75 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEECTTTCC
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeccccC
Confidence 56889999999999999999888887753 2334599999999999999999999873 455667766544
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------------CceE
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTR 187 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~ 187 (382)
....+...+.. .. +...+|+|||++.++...++.|+..+++.. ..+.
T Consensus 76 ~~~~l~~~l~~----~~-----------~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 76 KPGDLAAILAN----SL-----------EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp SHHHHHHHHTT----TC-----------CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ChHHHHHHHHH----hc-----------cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 43333222111 00 155699999999999999999999999753 3467
Q ss_pred EEEeecCccccchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc--
Q 016800 188 FFFICNYISRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-- 264 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-- 264 (382)
+|+++|....+.+++.+|+ .++.|++|+.+++..++...+...+..+++++++.++..++|++|.+.+.++.+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 8889999889999999999 4999999999999999999998889999999999999999999999999998876554
Q ss_pred --CCCCChhhHhhhh
Q 016800 265 --GSSITSKDLISVS 277 (382)
Q Consensus 265 --~~~It~~~v~~~~ 277 (382)
...|+.+++..+.
T Consensus 221 ~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 221 AGEEVITRERALEAL 235 (324)
T ss_dssp TSCSCCCHHHHHHHH
T ss_pred hcCCCCCHHHHHHHH
Confidence 3467777765543
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=199.12 Aligned_cols=123 Identities=22% Similarity=0.265 Sum_probs=110.4
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee---------cC----ccccchhhhcccceEEecCCCHHHHHHHH
Q 016800 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC---------NY----ISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 157 ~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~---------~~----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
+|++|||+|.|+.+++++|++.+|+|+.. .||+.+ .. +..++++++|||+.+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999888 577777 43 67899999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCCC
Q 016800 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSGVI 280 (382)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~ 280 (382)
..++..+++.++++++..++..+ +|++|.++++++.+...+ ...|+.++|.++.+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999875444 3679999998877543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-23 Score=187.37 Aligned_cols=216 Identities=19% Similarity=0.255 Sum_probs=160.6
Q ss_pred ccccccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc
Q 016800 41 MAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115 (382)
Q Consensus 41 ~~~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~ 115 (382)
|.|+..-...|.++++|.+|++++|++.++..+...+..+ ...+++|+||||+||||++++++..+.+ .
T Consensus 5 ~~~~~~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~------~ 78 (334)
T 1in4_A 5 LTPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT------N 78 (334)
T ss_dssp ------------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC------C
T ss_pred cccchHHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------C
Confidence 4455555667899999999999999999999888877653 3356999999999999999999999843 2
Q ss_pred eEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC------------
Q 016800 116 VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------ 183 (382)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------ 183 (382)
+...++........+...+.. . . ...|++|||++.+++..++.|+..++...
T Consensus 79 ~~~~sg~~~~~~~~l~~~~~~-----~-~----------~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~ 142 (334)
T 1in4_A 79 IHVTSGPVLVKQGDMAAILTS-----L-E----------RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAK 142 (334)
T ss_dssp EEEEETTTCCSHHHHHHHHHH-----C-C----------TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------
T ss_pred EEEEechHhcCHHHHHHHHHH-----c-c----------CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccc
Confidence 223333322222223222111 0 0 45699999999999988888888887542
Q ss_pred ------CceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 016800 184 ------KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (382)
Q Consensus 184 ------~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~ 256 (382)
+...++..++.+..+.+.+++||. .+.|++++.+++.++|.+.++..++.++++++..|++.++|++|.+.++
T Consensus 143 ~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 143 SIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp ------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred cccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 124566677888899999999997 6899999999999999999988899999999999999999999999999
Q ss_pred HHHHHHhc----CCCCChhhHhhhhC
Q 016800 257 LQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 257 l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
++.+..++ ...||.+++++++.
T Consensus 223 l~~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 223 TKRVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp HHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 98776544 35789888877663
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=182.42 Aligned_cols=212 Identities=12% Similarity=0.171 Sum_probs=164.7
Q ss_pred cCCchhhhhcCC-CCCCcccC---cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 46 QSSQPWVEKYRP-KQVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p-~~~~~~~g---~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
....+|..+++| .+|+++++ ++.++..+..++..+..++++|+||+|+|||++++.+++.+... ...+..+++
T Consensus 12 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~ 88 (242)
T 3bos_A 12 PLQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPL 88 (242)
T ss_dssp -CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred hhhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEH
Confidence 356789999999 79999997 36788888888887766679999999999999999999988543 234555655
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHHHhcCCc--eEEEEeecCcc-
Q 016800 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYSKV--TRFFFICNYIS- 196 (382)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~--~~~Ll~~le~~~~~--~~~Il~~~~~~- 196 (382)
.+... .+...+..+ .+..+|+|||++.+.... ++.|+.+++..... ..+|++++...
T Consensus 89 ~~~~~--~~~~~~~~~----------------~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 89 GIHAS--ISTALLEGL----------------EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPM 150 (242)
T ss_dssp GGGGG--SCGGGGTTG----------------GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred HHHHH--HHHHHHHhc----------------cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence 43211 000001000 145799999999997655 88888888765432 24777776443
Q ss_pred ---ccchhhhccc---ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCC
Q 016800 197 ---RIIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSS 267 (382)
Q Consensus 197 ---~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~ 267 (382)
.+.+.+.+|+ ..+.|++++.++...++...+...++.+++++++.+++.++||+|.+.+.++.+..++ +..
T Consensus 151 ~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~ 230 (242)
T 3bos_A 151 EAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRK 230 (242)
T ss_dssp TTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4568999999 7999999999999999999999899999999999999999999999999999887765 567
Q ss_pred CChhhHhhhhC
Q 016800 268 ITSKDLISVSG 278 (382)
Q Consensus 268 It~~~v~~~~~ 278 (382)
||.+++++++.
T Consensus 231 It~~~v~~~l~ 241 (242)
T 3bos_A 231 LTIPFVKEMLR 241 (242)
T ss_dssp CCHHHHHHHHT
T ss_pred CcHHHHHHHhh
Confidence 99998887653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-21 Score=179.67 Aligned_cols=230 Identities=19% Similarity=0.247 Sum_probs=168.4
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.+....+|..+|+| ++++|+++.++.+..++.. ... ++++|+||+|+|||++++.+++.+.+.. ...++
T Consensus 3 i~~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~ 77 (389)
T 1fnn_A 3 IVVDDSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFV 77 (389)
T ss_dssp CBSCGGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEE
T ss_pred cccCHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEE
Confidence 34667889999999 7799999999888888765 232 3699999999999999999999885432 34677
Q ss_pred EeecCCCcch-HHHHHHHHHHHHhhhcCCCCCCC---------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC----
Q 016800 118 ELNASDDRGI-NVVRTKIKTFAAVAVGSGQRRGG---------YPCPPYKIIILDEADSMTEDAQNALRRTMETYS---- 183 (382)
Q Consensus 118 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---- 183 (382)
.+++...... ..+...+..+.......+..... ...+++.+|+|||++.++.+.++.|++.+++.+
T Consensus 78 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 78 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp EEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSS
T ss_pred EEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCc
Confidence 7886554332 22222221110000000000000 001256799999999999999999999997654
Q ss_pred CceEEEEeecCc---cccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhc---------C
Q 016800 184 KVTRFFFICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---------Q 247 (382)
Q Consensus 184 ~~~~~Il~~~~~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s---------~ 247 (382)
..+.+|++++.+ ..+.+.+.+|+. .+.|+|++.+++..++...+... ...+++++++.+++.+ +
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR 237 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCC
Confidence 477888888877 567888999987 69999999999999999988762 2368999999999999 8
Q ss_pred CCHHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 248 GDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 248 gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
||+|.+++.++.++..+ ...|+.+++..+..
T Consensus 238 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 238 GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 99999999999877654 35688888877654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-20 Score=173.83 Aligned_cols=244 Identities=20% Similarity=0.234 Sum_probs=174.1
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCce
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRV 116 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~ 116 (382)
.+....+|..+|.| ++++|+++.+..+..++.. +..++++|+||+|+|||++++.+++.+.... .....+
T Consensus 5 ~f~~~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T 2v1u_A 5 IFRKRWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKP 81 (387)
T ss_dssp SBSCHHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhCHHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 34566778888888 7889999999999988854 3444599999999999999999999873210 013567
Q ss_pred EEeecCCCcchHHH-HHHHH------------------HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHH
Q 016800 117 LELNASDDRGINVV-RTKIK------------------TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNAL 175 (382)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~l~------------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~L 175 (382)
+.+++........+ ...+. .+..... ..+++.+|+|||+|.+... .++.|
T Consensus 82 ~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~~vlilDEi~~l~~~~~~~~~l 152 (387)
T 2v1u_A 82 IYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---------RLRGIYIIVLDEIDFLPKRPGGQDLL 152 (387)
T ss_dssp EEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---------TSCSEEEEEEETTTHHHHSTTHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---------ccCCeEEEEEccHhhhcccCCCChHH
Confidence 77887654332211 11111 1111100 0125679999999999876 77888
Q ss_pred HHHHHhc-----CCceEEEEeecCc---cccchhhhccc--ceEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHH
Q 016800 176 RRTMETY-----SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLS 243 (382)
Q Consensus 176 l~~le~~-----~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~ 243 (382)
..+++.. +..+.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++..++...+.. .+..+++++++.++
T Consensus 153 ~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~ 232 (387)
T 2v1u_A 153 YRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCA 232 (387)
T ss_dssp HHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHH
T ss_pred HhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 8887754 4567788888876 67889999999 58999999999999999998875 45678999999999
Q ss_pred HhcC---CCHHHHHHHHHHHHHhc----CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHH
Q 016800 244 SISQ---GDLRRAITYLQGAARLF----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANK 302 (382)
Q Consensus 244 ~~s~---gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (382)
+.++ ||+|.+++.++.++..+ ...|+.+++..+..... ...+.+.+..-+..+..-
T Consensus 233 ~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~---~~~~~~~~~~l~~~~~~~ 295 (387)
T 2v1u_A 233 ALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE---RDRVSEVVRTLPLHAKLV 295 (387)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH---HHHHHHHHHSSCHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh---hchHHHHHHcCCHHHHHH
Confidence 9998 99999999999887654 26799999988775321 223444455555544333
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=175.45 Aligned_cols=197 Identities=20% Similarity=0.241 Sum_probs=149.7
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCce
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~ 116 (382)
..|.++++|.+|++++|++.+++.+..++.. ....++||+||||||||++|+++++.+ +..+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~------~~~~ 176 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES------NATF 176 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEE
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh------cCcE
Confidence 3689999999999999999999999888732 123459999999999999999999987 4567
Q ss_pred EEeecCCCcch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC-----------CHHHHHHHHHHHHhc-
Q 016800 117 LELNASDDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMETY- 182 (382)
Q Consensus 117 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l-----------~~~~~~~Ll~~le~~- 182 (382)
+.+++.+.... ......+.......... ...||+|||+|.+ ....++.|+..++..
T Consensus 177 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 246 (389)
T 3vfd_A 177 FNISAASLTSKYVGEGEKLVRALFAVAREL----------QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ 246 (389)
T ss_dssp EEECSCCC-------CHHHHHHHHHHHHHS----------SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC
T ss_pred EEeeHHHhhccccchHHHHHHHHHHHHHhc----------CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc
Confidence 88887654321 11111222222221111 4579999999988 344567788888743
Q ss_pred ---CCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 016800 183 ---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (382)
Q Consensus 183 ---~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~ 258 (382)
+..++||.++|.+..+.+.+.+||. .+.|+.|+.++...++..++...+..++++.+..++..+.|..+..+..|.
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3457788889999999999999997 799999999999999999999888899999999999999998887665554
Q ss_pred HHH
Q 016800 259 GAA 261 (382)
Q Consensus 259 ~~~ 261 (382)
..+
T Consensus 327 ~~a 329 (389)
T 3vfd_A 327 KDA 329 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-20 Score=166.73 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=146.7
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.|.+++.|.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+ ...++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~------~~~~~ 83 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC------SATFL 83 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT------TCEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeE
Confidence 467788899999999999999999887743 123349999999999999999999987 34566
Q ss_pred EeecCCCcc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH
Q 016800 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (382)
Q Consensus 118 ~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le 180 (382)
.+++.+... ...++..+.... .. .+.+|+|||+|.+. ...++.|+..++
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVAR----HM----------QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHH----HT----------CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHH----Hc----------CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 677654321 122222222111 11 55799999998873 455678888888
Q ss_pred hcC-----CceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH
Q 016800 181 TYS-----KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 181 ~~~-----~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~ 254 (382)
..+ ..+.+|.+||.+..+.+++.+||. .+.++.|+.++...++...+...+..++++.+..+++.+.|..+..+
T Consensus 150 ~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp HCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred cccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 765 347788889999999999999996 88999999999999999999888888999999999999999887666
Q ss_pred -HHHHHHH
Q 016800 255 -TYLQGAA 261 (382)
Q Consensus 255 -~~l~~~~ 261 (382)
++++.++
T Consensus 230 ~~l~~~a~ 237 (297)
T 3b9p_A 230 TALAKDAA 237 (297)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 4444443
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=170.45 Aligned_cols=294 Identities=20% Similarity=0.189 Sum_probs=186.4
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CC-CC
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LY-KS 114 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~-~~ 114 (382)
.+.+..+|..+|+| ++++|+++.++.+..++.. +..++++|+||+|+|||++++.+++.+.... .. ..
T Consensus 6 i~~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 82 (384)
T 2qby_B 6 IKNPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDV 82 (384)
T ss_dssp -CCTTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTC
T ss_pred ccccHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 44678899999999 7889999999888776654 3344599999999999999999999873210 01 35
Q ss_pred ceEEeecCCCc-ch-HHHHHHHHHHHHhhhcC-CCCCC--------CCCCCCcEEEEEeCCCCCCHHH-HHH-HHHHHHh
Q 016800 115 RVLELNASDDR-GI-NVVRTKIKTFAAVAVGS-GQRRG--------GYPCPPYKIIILDEADSMTEDA-QNA-LRRTMET 181 (382)
Q Consensus 115 ~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~-~~~~~--------~~~~~~~~vliiDe~d~l~~~~-~~~-Ll~~le~ 181 (382)
.++.+++.... .. ..+...+..+....... +.... .... ...+|+|||+|.+.... ++. +..+++.
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~ 161 (384)
T 2qby_B 83 KQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRS 161 (384)
T ss_dssp EEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTS
T ss_pred eEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcC
Confidence 66777765322 11 11122222110000000 00000 0001 22399999999986543 555 5555555
Q ss_pred cCCceEEEEeecCc---cccchhhhccc-ceEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHhcC---CCHHH
Q 016800 182 YSKVTRFFFICNYI---SRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSSISQ---GDLRR 252 (382)
Q Consensus 182 ~~~~~~~Il~~~~~---~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~s~---gdlr~ 252 (382)
. ..+.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++..++..++.. .+..+++++++.+++.++ ||+|.
T Consensus 162 ~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~ 240 (384)
T 2qby_B 162 D-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARK 240 (384)
T ss_dssp S-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHH
T ss_pred C-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHH
Confidence 4 677889998876 67889999995 69999999999999999998865 345689999999999998 99999
Q ss_pred HHHHHHHHHHhc--CCCCChhhHhhhhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--c
Q 016800 253 AITYLQGAARLF--GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVE--T 328 (382)
Q Consensus 253 a~~~l~~~~~~~--~~~It~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--~ 328 (382)
+++.++.++..+ ...|+.+++..++..... ..+.+.+..-+..+ ..++..+.. +.....+.......+.. .
T Consensus 241 a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~---~~~~~~~~~l~~~~-~~~l~al~~-~~~~~~~~~~~~~~~~~~g~ 315 (384)
T 2qby_B 241 AVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ---ERLIEAVKALPFHY-KLALRSLIE-SEDVMSAHKMYTDLCNKFKQ 315 (384)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH---HHHHHHHHSSCHHH-HHHHHHHHT-CCBHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc---chHHHHHHcCCHHH-HHHHHHHHH-hcccChHHHHHHHHHHHcCC
Confidence 999999888766 257999999887753322 22334444434333 334444443 22212222222222221 1
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 016800 329 EDISDEQQARICKCLAEVD 347 (382)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~ 347 (382)
...+.....+++..+.+..
T Consensus 316 ~~~~~~~~~~~l~~L~~~g 334 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFG 334 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 2355566666666665543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=171.23 Aligned_cols=197 Identities=20% Similarity=0.202 Sum_probs=146.8
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHH----------cC-CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCce
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLE----------TA-NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~----------~~-~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~ 116 (382)
..|..++.+.+|++++|++.+++.+..++. .+ .. .++||+||||||||++|+++++.+ +..+
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~ 79 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTF 79 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH------TCEE
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH------CCCE
Confidence 346778888899999999999999988872 12 22 249999999999999999999997 3566
Q ss_pred EEeecCCCc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHh--
Q 016800 117 LELNASDDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMET-- 181 (382)
Q Consensus 117 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~-- 181 (382)
+.+++.+.. ........+.......... .+.||+|||+|.+.. ..++.|+..++.
T Consensus 80 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 149 (322)
T 3eie_A 80 FSVSSSDLVSKWMGESEKLVKQLFAMAREN----------KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 149 (322)
T ss_dssp EEEEHHHHHTTTGGGHHHHHHHHHHHHHHT----------SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG
T ss_pred EEEchHHHhhcccchHHHHHHHHHHHHHhc----------CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc
Confidence 777764321 1111222232222222111 457999999998853 346788888874
Q ss_pred -cCCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 016800 182 -YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 182 -~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
....+.+|.+||.+..+.+++++|+. .+.|++|+.++...+++..+...+..+++..+..|++.+.| +.+.+.++++
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 150 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp TSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34567788889999999999999996 78999999999999999999887777899999999999977 4555555555
Q ss_pred HHH
Q 016800 259 GAA 261 (382)
Q Consensus 259 ~~~ 261 (382)
.++
T Consensus 230 ~a~ 232 (322)
T 3eie_A 230 DAL 232 (322)
T ss_dssp HHT
T ss_pred HHH
Confidence 443
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=168.98 Aligned_cols=188 Identities=23% Similarity=0.234 Sum_probs=144.1
Q ss_pred cccCcHHHHHHHHHHHH---------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceEEeecCCCc
Q 016800 62 DVAHQEEVVRVLTNTLE---------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDR 125 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---------------~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~-~~~~~~~~~~~~~~ 125 (382)
+++|++++++.+..++. .....+++|+||||||||++|+++++.+.+... ....++.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 79999999988887664 223335999999999999999999998854332 12356677665421
Q ss_pred c--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 126 G--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 126 ~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
. .......+....... ...+|+|||+|.+ +...++.|++.+++++..+.+|++++.
T Consensus 112 ~~~~g~~~~~~~~~~~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA-------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH-------------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred hhcccccHHHHHHHHHhc-------------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 1 111111122221111 2359999999977 788999999999999888889999875
Q ss_pred cc-----ccchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHHH
Q 016800 195 IS-----RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQGA 260 (382)
Q Consensus 195 ~~-----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~gdlr~a~~~l~~~ 260 (382)
.. .+.+++++|+ ..+.|++|+.+++..++..++...+..++++++..+++. ..||+|.+.+.++.+
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 42 3468999999 699999999999999999999999999999999999886 359999999999988
Q ss_pred HH
Q 016800 261 AR 262 (382)
Q Consensus 261 ~~ 262 (382)
..
T Consensus 259 ~~ 260 (309)
T 3syl_A 259 RL 260 (309)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-20 Score=168.72 Aligned_cols=198 Identities=20% Similarity=0.206 Sum_probs=140.0
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCce
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRV 116 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~ 116 (382)
..+..++.+.+|++++|++.+++.+...+.. ...+ ++||+||||||||++|+++++.+ ...+
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~------~~~~ 112 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTF 112 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH------TCEE
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCE
Confidence 3456678889999999999999999887631 1222 49999999999999999999998 3456
Q ss_pred EEeecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhc-
Q 016800 117 LELNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETY- 182 (382)
Q Consensus 117 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~- 182 (382)
+.+++.+... .......+.......... .+.||+|||+|.+.. ...+.|+..++..
T Consensus 113 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~----------~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 113 FSVSSSDLVSKWMGESEKLVKQLFAMAREN----------KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp EEEEHHHHHSCC---CHHHHHHHHHHHHHT----------SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred EEeeHHHHhhhhcchHHHHHHHHHHHHHHc----------CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 6666543110 111111222222211111 557999999999863 3467888888743
Q ss_pred --CCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 016800 183 --SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 183 --~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
...+.||.+||.+..+.+++++|+. .+.+++|+.++...++...+...+..+++..++.|++.+.| +.+.+.++++
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567788899999999999999996 88999999999999999998877777889999999999988 5555556665
Q ss_pred HHHH
Q 016800 259 GAAR 262 (382)
Q Consensus 259 ~~~~ 262 (382)
.++.
T Consensus 263 ~A~~ 266 (355)
T 2qp9_X 263 DALM 266 (355)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=166.90 Aligned_cols=195 Identities=18% Similarity=0.197 Sum_probs=144.9
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
+.+++.|.+|++++|++.+++.+...+.. + ...++||+||||||||++|+++++.+ ...++.
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~ 147 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS------GATFFS 147 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT------TCEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc------CCeEEE
Confidence 45677889999999999999999888752 2 23349999999999999999999987 356677
Q ss_pred eecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHh----
Q 016800 119 LNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET---- 181 (382)
Q Consensus 119 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~---- 181 (382)
+++.+... .......+.......... .+.+|+|||+|.+. ...++.|+..++.
T Consensus 148 i~~~~l~~~~~g~~~~~~~~~~~~a~~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 217 (357)
T 3d8b_A 148 ISASSLTSKWVGEGEKMVRALFAVARCQ----------QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS 217 (357)
T ss_dssp EEGGGGCCSSTTHHHHHHHHHHHHHHHT----------CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----
T ss_pred EehHHhhccccchHHHHHHHHHHHHHhc----------CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc
Confidence 77754321 111112222222211111 56799999998773 2346677877774
Q ss_pred cCCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 016800 182 YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQG 259 (382)
Q Consensus 182 ~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~ 259 (382)
....+.||.+||.+..+.+++++|+. .+.++.|+.++...++...+...+..++++.+..++..+.| ..+.+..++..
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34567788889999999999999998 78999999999999999999888888999999999999988 44444445554
Q ss_pred HH
Q 016800 260 AA 261 (382)
Q Consensus 260 ~~ 261 (382)
++
T Consensus 298 a~ 299 (357)
T 3d8b_A 298 AS 299 (357)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.9e-19 Score=163.71 Aligned_cols=220 Identities=18% Similarity=0.260 Sum_probs=157.2
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~ 119 (382)
.+....+|..+|.| ++++|+++.++.+..++.. +...+++|+||+|+|||++++.+++.+.........++.+
T Consensus 6 i~~~~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 6 IFINREYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CBSCGGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred cccchhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 34566778888888 6789999999999988874 3344599999999999999999999873211002345666
Q ss_pred ecCCCcc----------------------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC----HHHHH
Q 016800 120 NASDDRG----------------------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT----EDAQN 173 (382)
Q Consensus 120 ~~~~~~~----------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~----~~~~~ 173 (382)
++..... ...+...+..... .. +.+.+|+|||++.+. .+...
T Consensus 83 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~---------~~~~vlilDE~~~l~~~~~~~~l~ 150 (386)
T 2qby_A 83 NTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---DY---------GSQVVIVLDEIDAFVKKYNDDILY 150 (386)
T ss_dssp EHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---TC---------CSCEEEEEETHHHHHHSSCSTHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---cc---------CCeEEEEEcChhhhhccCcCHHHH
Confidence 6432111 1111111211111 11 146799999999885 34556
Q ss_pred HHHHHHHh-cCCceEEEEeecCc---cccchhhhccc--ceEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHh
Q 016800 174 ALRRTMET-YSKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNEEG--LNLDAEALSTLSSI 245 (382)
Q Consensus 174 ~Ll~~le~-~~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~ 245 (382)
.|++.++. ....+.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++.+++...+.... ..+++++++.+++.
T Consensus 151 ~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~ 230 (386)
T 2qby_A 151 KLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAAL 230 (386)
T ss_dssp HHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHH
T ss_pred HHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHH
Confidence 66666664 34467788888866 45778899998 5899999999999999998876533 56899999999999
Q ss_pred cC---CCHHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 246 SQ---GDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 246 s~---gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
++ ||+|.++++++.++..+ ...|+.+++..+..
T Consensus 231 ~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 231 AAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 98 99999999998877654 24799999988764
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=172.06 Aligned_cols=213 Identities=17% Similarity=0.196 Sum_probs=156.9
Q ss_pred cCCC-CCCccc-C--cHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 55 YRPK-QVKDVA-H--QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 55 ~~p~-~~~~~~-g--~~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
+.|. +|++++ | +......+..+..... .++++|+||+|+||||+++++++.+.... ....++.+++.+. ...
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~~~--~~~ 174 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKF--LND 174 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHHHH--HHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHH--HHH
Confidence 4453 788888 5 4455566666666544 45599999999999999999999874321 1245566665432 111
Q ss_pred HHHHHH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcC-CceEEEEeecCc-cc---
Q 016800 130 VRTKIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI-SR--- 197 (382)
Q Consensus 130 ~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~-~~~~~Il~~~~~-~~--- 197 (382)
+...+. .+... .. .+..+++|||++.+.. ..++.|+.+++... ....+|++++.+ ..
T Consensus 175 ~~~~~~~~~~~~~~~~-~~----------~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 175 LVDSMKEGKLNEFREK-YR----------KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHTTCHHHHHHH-HT----------TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHcccHHHHHHH-hc----------CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 111111 11110 00 0346999999999975 67889999988643 345677777653 33
Q ss_pred cchhhhccc---ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc---CCCCChh
Q 016800 198 IIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSK 271 (382)
Q Consensus 198 l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~---~~~It~~ 271 (382)
+.+.+++|+ ..+.|++|+.++...++...+...++.++++++..|+..++||+|.+.+.++.+..++ +..||.+
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~ 323 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLK 323 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 779999999 5899999999999999999999999999999999999999999999999999887665 5679999
Q ss_pred hHhhhhCCCC
Q 016800 272 DLISVSGVIP 281 (382)
Q Consensus 272 ~v~~~~~~~~ 281 (382)
++++++....
T Consensus 324 ~~~~~l~~~~ 333 (440)
T 2z4s_A 324 EAILLLKDFI 333 (440)
T ss_dssp HHHHHTSTTT
T ss_pred HHHHHHHHHh
Confidence 9999887644
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=164.29 Aligned_cols=204 Identities=19% Similarity=0.263 Sum_probs=145.3
Q ss_pred CcccCcHHHHHHHHHHHHc--------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 61 KDVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
++++|++.+++.+...+.. ....+++|+||||||||++|+++++.+. ..++.+++.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~------~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKFTE 88 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEGGGGSS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEcchhccc
Confidence 4689999999998887764 2344599999999999999999999983 3456666643211
Q ss_pred --------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHH------------HHHHHHHHHhc----
Q 016800 127 --------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA------------QNALRRTMETY---- 182 (382)
Q Consensus 127 --------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~------------~~~Ll~~le~~---- 182 (382)
...+......... .... ...+.||+|||+|.++.+. ++.|++++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 159 (310)
T 1ofh_A 89 VGYVGKEVDSIIRDLTDSAGG-AIDA--------VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST 159 (310)
T ss_dssp CCSGGGSTTHHHHHHHHTTTT-CHHH--------HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCccCccHHHHHHHHHHHhhH-HHhh--------ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec
Confidence 1112222111000 0000 0034699999999997654 88999999963
Q ss_pred ------CCceEEEEee----cCccccchhhhcccc-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHH
Q 016800 183 ------SKVTRFFFIC----NYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEA 238 (382)
Q Consensus 183 ------~~~~~~Il~~----~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~ 238 (382)
...+.||+++ +.+..+.+++.+|+. .+.|++|+.+++..++.. .+...+. .+++++
T Consensus 160 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a 239 (310)
T 1ofh_A 160 KHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDA 239 (310)
T ss_dssp TTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHH
T ss_pred ccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHH
Confidence 3456677774 456778999999997 699999999999999882 2333453 589999
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHHHHh-----c---CC--CCChhhHhhhhCC
Q 016800 239 LSTLSSIS--------QGDLRRAITYLQGAARL-----F---GS--SITSKDLISVSGV 279 (382)
Q Consensus 239 ~~~l~~~s--------~gdlr~a~~~l~~~~~~-----~---~~--~It~~~v~~~~~~ 279 (382)
++.|++.+ .||+|.+.+.++.+... . +. .||.++|..++..
T Consensus 240 ~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 240 VKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 99999988 79999999999986521 1 11 3888888887754
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-20 Score=175.39 Aligned_cols=197 Identities=15% Similarity=0.200 Sum_probs=143.6
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeec
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~ 121 (382)
.-..+|.++++|..+++++|+++.+..+...+.....+|+||+||||||||++|+++++.+.+.. ..+..++.+++
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 45678999999999999999999999999999888888899999999999999999999985432 12345666665
Q ss_pred CCCcch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc-
Q 016800 122 SDDRGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS- 196 (382)
Q Consensus 122 ~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~- 196 (382)
.. ... ..++..+.... .. +..|++|| .+.++++.|+..++. ..+.+|.++|...
T Consensus 245 ~~-~~~g~~e~~~~~~~~~~~----~~----------~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~ 303 (468)
T 3pxg_A 245 GT-KYRGEFEDRLKKVMDEIR----QA----------GNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEY 303 (468)
T ss_dssp ---------CTTHHHHHHHHH----TC----------CCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTT
T ss_pred Cc-cccchHHHHHHHHHHHHH----hc----------CCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHH
Confidence 41 111 12222222221 11 45699999 556778888888874 3567888888765
Q ss_pred ----ccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 016800 197 ----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYLQGAAR 262 (382)
Q Consensus 197 ----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g------dlr~a~~~l~~~~~ 262 (382)
.+.+++.+||..+.|++|+.++...++..++.. +++.++++++..++..+.+ -++.++++++.++.
T Consensus 304 ~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 304 RKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 578999999999999999999999999987765 6788999999999987643 36689999987765
Q ss_pred h
Q 016800 263 L 263 (382)
Q Consensus 263 ~ 263 (382)
.
T Consensus 384 ~ 384 (468)
T 3pxg_A 384 K 384 (468)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-19 Score=156.75 Aligned_cols=206 Identities=18% Similarity=0.153 Sum_probs=148.4
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.|.+++.+.+|++++|++.+++.+...+.. .. ..+++|+||||||||+++++++..+. ..++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~ 74 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFF 74 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT------CCEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CCEE
Confidence 488899999999999999999877765532 12 23499999999999999999999873 3456
Q ss_pred EeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHH
Q 016800 118 ELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRR 177 (382)
Q Consensus 118 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~ 177 (382)
.+++.+.. ....++..+... ... .+.+++|||+|.+.. ...+.++.
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~a----~~~----------~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 140 (257)
T 1lv7_A 75 TISGSDFVEMFVGVGASRVRDMFEQA----KKA----------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV 140 (257)
T ss_dssp EECSCSSTTSCCCCCHHHHHHHHHHH----HTT----------CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHH
T ss_pred EEeHHHHHHHhhhhhHHHHHHHHHHH----HHc----------CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHH
Confidence 66665421 122233322221 111 456999999976632 34566777
Q ss_pred HHHhc--CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CH
Q 016800 178 TMETY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DL 250 (382)
Q Consensus 178 ~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dl 250 (382)
.++.. ...+.+|.++|.++.+.+.+.+ |+. .+.|++|+.++..+++...++... ++++ .+..++..+.| +.
T Consensus 141 ~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 141 EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSG 218 (257)
T ss_dssp HHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCH
T ss_pred HhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCH
Confidence 77753 3456788889999999999987 765 789999999999999988776543 3333 36778888999 99
Q ss_pred HHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 251 RRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 251 r~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
|.+.+.+..++..+ ...|+.+++.+++
T Consensus 219 ~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~ 249 (257)
T 1lv7_A 219 ADLANLVNEAALFAARGNKRVVSMVEFEKAK 249 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 99999888877654 3568888876654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-19 Score=159.36 Aligned_cols=205 Identities=18% Similarity=0.185 Sum_probs=142.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
.+.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+ ...++.+++.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~ 85 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGS 85 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehH
Confidence 346899999999999999887743 233459999999999999999999987 3456666654
Q ss_pred CCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC-----------CHHHHHHHHHHHHh-----cCC
Q 016800 123 DDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMET-----YSK 184 (382)
Q Consensus 123 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l-----------~~~~~~~Ll~~le~-----~~~ 184 (382)
+... .......+.......... .+.||+|||+|.+ ....+..|..+++. ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKEK----------APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHHT----------CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHhccchHHHHHHHHHHHHHHc----------CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 3211 111122222222221111 4579999999987 44556666666653 335
Q ss_pred ceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Q 016800 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGA 260 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~ 260 (382)
.+.+|+++|.+..+.+.+.+ |+. .+.|++|+.++..+++...+...+.. .+..+..++..+.| +.+.+..++..+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEA 234 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67888999999999999998 876 89999999999999999887665543 22346777887766 555655555555
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
...+ ...|+.+++.+++
T Consensus 235 ~~~a~~~~~~~I~~~d~~~al 255 (285)
T 3h4m_A 235 GMNAIRELRDYVTMDDFRKAV 255 (285)
T ss_dssp HHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHhccCcCCHHHHHHHH
Confidence 4433 3568888877665
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=164.46 Aligned_cols=187 Identities=16% Similarity=0.180 Sum_probs=138.6
Q ss_pred CCCCccc-C--cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
.+|++++ | +......+..++.... .++++|+||||+|||++++++++.+... +..++.+++.+. ...+..
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~--~~~~~~ 82 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDF--AQAMVE 82 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHH--HHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHH--HHHHHH
Confidence 4788887 4 5566677777777653 3459999999999999999999987433 345667766432 111111
Q ss_pred HHH-----HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcC-CceEEEEeecCc-c---ccch
Q 016800 133 KIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI-S---RIIE 200 (382)
Q Consensus 133 ~l~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~-~~~~~Il~~~~~-~---~l~~ 200 (382)
.+. .+... .. +..+++|||++.++. ..++.|+.+++... ....+|++++.+ . .+.+
T Consensus 83 ~~~~~~~~~~~~~-~~-----------~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 83 HLKKGTINEFRNM-YK-----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHTCHHHHHHH-HH-----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHcCcHHHHHHH-hc-----------CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 111 11110 00 346999999999975 67888888887532 334566666543 3 5789
Q ss_pred hhhccc---ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016800 201 PLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (382)
Q Consensus 201 ~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~ 263 (382)
.+.+|+ ..+.|+| +.++...++...+...++.+++++++.|+..+ ||+|.+.+.++.+..+
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 999999 6899999 99999999999999999999999999999999 9999999999988765
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-18 Score=153.05 Aligned_cols=205 Identities=16% Similarity=0.114 Sum_probs=134.5
Q ss_pred CCCCCcccCcHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+.+|++++|++.+++.+.+++.. ....+++|+||||||||++|+++++.+ ...++.+++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 35789999999999888776532 122349999999999999999999987 345666776543
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC------------HHHHH---HHHHHHHh--cCCc
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQN---ALRRTMET--YSKV 185 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~------------~~~~~---~Ll~~le~--~~~~ 185 (382)
.. .......+.......... .+.+|+|||+|.+. ...+. .|+..++. ....
T Consensus 76 ~~~~~~~~~~~~~~~~~~a~~~----------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 76 VEVIGGLGAARVRSLFKEARAR----------APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp SSSSTTHHHHHHHHHHHHHHHT----------CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred HhhccChhHHHHHHHHHHHHhc----------CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 21 011111122222111111 45799999999983 22333 34444443 2356
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCC-HHHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD-LRRAITYLQGA 260 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gd-lr~a~~~l~~~ 260 (382)
+.+|.++|.+..+.+++.+ |+. .+.|++|+.++..+++...+...+...+.+. ...++..+.|. .+.+.++++.+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEA 225 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 7788889999999999998 885 8899999999999999999988887777664 57888888775 44666666665
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
+..+ ...|+.+++..++
T Consensus 226 ~~~a~~~~~~~i~~~d~~~a~ 246 (262)
T 2qz4_A 226 ALHAAREGHTSVHTLNFEYAV 246 (262)
T ss_dssp HTC--------CCBCCHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHH
Confidence 5443 2456666665544
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=159.03 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=139.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.|...+.- | ..| .+|||||||||||.+|+++|.++ +.+++.+++++.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l 218 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAEL 218 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHh
Confidence 5899999999999998876632 2 223 39999999999999999999998 466777777643
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHh--cCCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMET--YSKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~--~~~~~ 186 (382)
.. ...-...+...+..+... .+.||+|||+|.+.. ...+.|+..|+. ....+
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~----------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREH----------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHT----------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred hccccchHHHHHHHHHHHHHHh----------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 21 111122233333222221 457999999998832 134567777774 34567
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~ 262 (382)
.+|.+||.++.+++++++ |+. .+.|+.|+.++..++++..+++.... ++-.++.|++.+.| +-..+.+++..++.
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~ 367 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGM 367 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 788999999999999997 777 89999999999999998877654432 12237788888765 33344444444444
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
.+ ...|+.+++..++
T Consensus 368 ~Air~~~~~vt~~Df~~Al 386 (405)
T 4b4t_J 368 YALRERRIHVTQEDFELAV 386 (405)
T ss_dssp HHHHTTCSBCCHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHH
Confidence 33 3457777665544
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-19 Score=157.15 Aligned_cols=200 Identities=7% Similarity=0.064 Sum_probs=136.8
Q ss_pred ccCcHHHHHHHH----HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCCCcchHHHH-HH
Q 016800 63 VAHQEEVVRVLT----NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDDRGINVVR-TK 133 (382)
Q Consensus 63 ~~g~~~~~~~l~----~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~~~~~~~~~-~~ 133 (382)
+.|+++....+. ..+..+..++++|+||||||||++++.+++.+.... .....++++|+........+. ..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 667777776655 445567777799999999999999999999984221 113567889986543322221 11
Q ss_pred HHHHHHhhhcCCCC-------CCC--CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---CCceEEEEeecCccc----
Q 016800 134 IKTFAAVAVGSGQR-------RGG--YPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVTRFFFICNYISR---- 197 (382)
Q Consensus 134 l~~~~~~~~~~~~~-------~~~--~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~---- 197 (382)
...+.......... +.. ...+...||++||+|.+. .++.|+.+++.+ .....+|+++|..+.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 11111000000000 000 001256799999999998 677888887643 335667888877542
Q ss_pred cchhhhcccc--eEEecCCCHHHHHHHHHHHHHHhCC-----------------------------------CCCHHHHH
Q 016800 198 IIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGL-----------------------------------NLDAEALS 240 (382)
Q Consensus 198 l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~~~~~~ 240 (382)
+.+.++||+. .+.|+|++.+|+.+++.+++..... .+++++++
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~ 259 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ 259 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH
Confidence 5567889984 7999999999999999999876421 36899999
Q ss_pred HHHH---hcCCCHHHHHHHHHHHHHhc
Q 016800 241 TLSS---ISQGDLRRAITYLQGAARLF 264 (382)
Q Consensus 241 ~l~~---~s~gdlr~a~~~l~~~~~~~ 264 (382)
.+++ .+.||+|+|++.|..+...+
T Consensus 260 ~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 260 LIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 9998 56899999999999887654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=157.56 Aligned_cols=188 Identities=18% Similarity=0.157 Sum_probs=139.6
Q ss_pred cCCCCCCcccCcHHHHHHHHHHHHc-----------CCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 55 YRPKQVKDVAHQEEVVRVLTNTLET-----------ANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+.+.+|+++.|++.+++.+...+.. ... .++||+||||||||++|+++++.+. ...++.++++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~~ 80 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISSS 80 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEhH
Confidence 3456899999999999999887731 122 2399999999999999999999872 2355666665
Q ss_pred CCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc---
Q 016800 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--- 182 (382)
Q Consensus 123 ~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~--- 182 (382)
+.. ....++..+.... .. .+.||+|||+|.+. ....+.|+..++..
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~----~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLAR----EN----------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHH----HT----------SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred HHHhhhhhHHHHHHHHHHHHHH----hc----------CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 421 1222333322211 11 55799999999882 23467788888753
Q ss_pred CCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGA 260 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd-lr~a~~~l~~~ 260 (382)
...+.+|.+||.+..+.+++++|+. .+.+++|+.++...++...+...+..+++..+..|++.+.|. .+.+..+++.+
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4567788899999999999999996 899999999999999999888777778999999999999875 44444555544
Q ss_pred H
Q 016800 261 A 261 (382)
Q Consensus 261 ~ 261 (382)
+
T Consensus 227 ~ 227 (322)
T 1xwi_A 227 L 227 (322)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=165.30 Aligned_cols=214 Identities=18% Similarity=0.174 Sum_probs=151.9
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
.+|.++++|..+++++|+++++..+...+..+. +++|+||||||||++|+++++.+. ..+..+++.......
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~------~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMD------LDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTT------CCEEEEECCTTCCHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhC------CCeEEEecCCCCChh
Confidence 479999999999999999999999988887754 799999999999999999999873 334555543221111
Q ss_pred HHHHHHHHHHHhhhcCCC---CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecC
Q 016800 129 VVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNY 194 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~ 194 (382)
.+ +.... .....+. ..+.. ...+++|||++.++.+.++.|+..+++. +..+.+|.++|+
T Consensus 87 ~l---~g~~~-~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 87 DL---IGTMI-YNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp HH---HEEEE-EETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred hc---CCcee-ecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 11 00000 0000000 00000 1259999999999999999999999974 344556656664
Q ss_pred cc-----ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHH----------------------hCCCCCHHHHHHHHHhc
Q 016800 195 IS-----RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE----------------------EGLNLDAEALSTLSSIS 246 (382)
Q Consensus 195 ~~-----~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~l~~~s 246 (382)
.. .+.+++.+||. .+.+++|+.++..+++...+.. .++.+++++++.+++.+
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~ 239 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELV 239 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 32 37899999998 5999999999999999887654 26778999998887654
Q ss_pred --------------------CCCHHHHHHHHHHHHHhc---C-CCCChhhHhhhh
Q 016800 247 --------------------QGDLRRAITYLQGAARLF---G-SSITSKDLISVS 277 (382)
Q Consensus 247 --------------------~gdlr~a~~~l~~~~~~~---~-~~It~~~v~~~~ 277 (382)
+.++|.+++++..+...+ + ..|+.++|.+++
T Consensus 240 ~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~ 294 (331)
T 2r44_A 240 FATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVA 294 (331)
T ss_dssp HHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred HHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 226999988887665443 2 347777765544
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=165.94 Aligned_cols=194 Identities=18% Similarity=0.155 Sum_probs=142.2
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceE
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------ANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~ 117 (382)
.+..++.+.+|++++|++.+++.|...+.. ... .++||+||||||||++|+++++.+. ...++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~ 197 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFF 197 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEE
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEE
Confidence 345567788999999999999999887731 122 3499999999999999999999872 23566
Q ss_pred EeecCCCcch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHH
Q 016800 118 ELNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (382)
Q Consensus 118 ~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le 180 (382)
.+++++.... ..++..+.... .. .+.||+|||+|.+. ....+.|+..++
T Consensus 198 ~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 263 (444)
T 2zan_A 198 SISSSDLVSKWLGESEKLVKNLFQLAR----EN----------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ 263 (444)
T ss_dssp EECCC---------CCCTHHHHHHHHH----HS----------CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTT
T ss_pred EEeHHHHHhhhcchHHHHHHHHHHHHH----Hc----------CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHh
Confidence 6666543211 11222222111 11 55799999999983 345677777777
Q ss_pred h---cCCceEEEEeecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHH
Q 016800 181 T---YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (382)
Q Consensus 181 ~---~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~ 255 (382)
. .+..+.||.+||.+..+.+++++||. .+.+++|+.++...++...+...+..+++..+..|+..+.| +.+.+.+
T Consensus 264 ~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 264 GVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp CSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 5 35678889999999999999999996 88999999999999999988777766789999999999988 5555555
Q ss_pred HHHHHHH
Q 016800 256 YLQGAAR 262 (382)
Q Consensus 256 ~l~~~~~ 262 (382)
++..++.
T Consensus 344 l~~~a~~ 350 (444)
T 2zan_A 344 IVRDALM 350 (444)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555543
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=155.64 Aligned_cols=203 Identities=21% Similarity=0.203 Sum_probs=137.5
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.+...+.. | ..|. +|||||||||||++|+++|.++ +.+++.+++++.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l 251 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGI 251 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGT
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhh
Confidence 4899999999999988877632 2 2333 9999999999999999999998 456777777643
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcC--Cce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS--KVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~--~~~ 186 (382)
.+ ...-...+...+...... .+.||+|||+|.+.. ...+.|+..|+... ..+
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~----------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEH----------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHS----------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred ccccchHHHHHHHHHHHHHHhc----------CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 21 111122233322222221 557999999998731 23456777777543 457
Q ss_pred EEEEeecCccccchhhhcc--cc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAAR 262 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~sr--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~ 262 (382)
.+|++||.++.++++++++ +. .|+|+.|+.++...+++..+.+.... ++-.+..+++.+.| +-..+.+++..++.
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGF 400 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 8899999999999999876 54 79999999999999998877654432 22237788888765 33344444444443
Q ss_pred hc----CCCCChhhHhhhh
Q 016800 263 LF----GSSITSKDLISVS 277 (382)
Q Consensus 263 ~~----~~~It~~~v~~~~ 277 (382)
.+ ...|+.+++..++
T Consensus 401 ~air~~~~~i~~~d~~~Al 419 (437)
T 4b4t_L 401 FAIRDDRDHINPDDLMKAV 419 (437)
T ss_dssp HHHHTTCSSBCHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHH
Confidence 33 3457766655443
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=158.79 Aligned_cols=203 Identities=22% Similarity=0.261 Sum_probs=136.7
Q ss_pred CCCCcccCcHHHHHHHHHHHH-----------cC-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE-----------TA-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~-----------~~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.|...+. .| +.|. +|||||||||||++|+++|.++ +..++.+++++.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l 251 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQL 251 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhh
Confidence 589999999999998877642 12 2233 9999999999999999999998 456777777543
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HH---HHHHHHHHHHhcC--Cce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------ED---AQNALRRTMETYS--KVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~---~~~~Ll~~le~~~--~~~ 186 (382)
.. ...-...+..++...... .+.||+|||+|.+. .. ..+.|+..|+... ..+
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~----------aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~V 321 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEK----------APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRV 321 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHH----------CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSS
T ss_pred hhcccchHHHHHHHHHHHHHhc----------CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 21 111112222222221111 45799999999761 11 2345666676543 456
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGAA 261 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~~ 261 (382)
.+|.+||.++.+++++.+ |+. .+.|+.|+.++..++++..+++... +++ .++.|++.+.| +...+.+++..++
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFNGAQLKAVTVEAG 399 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 788899999999999987 776 8999999999999999888776543 222 36778887765 3344444444444
Q ss_pred Hhc----CCCCChhhHhhhhC
Q 016800 262 RLF----GSSITSKDLISVSG 278 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~~ 278 (382)
..+ ...|+.+++..++.
T Consensus 400 ~~a~r~~~~~i~~~Df~~Al~ 420 (434)
T 4b4t_M 400 MIALRNGQSSVKHEDFVEGIS 420 (434)
T ss_dssp HHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHH
Confidence 333 35677777666553
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=157.83 Aligned_cols=189 Identities=23% Similarity=0.309 Sum_probs=139.2
Q ss_pred CcccCcHHHHHHHHHHHHcCC--------CC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETAN--------CP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--------~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
++++|++.+++.+...+..+. .. +++|+||||||||++|+++++.+.+.. ..++.+++..........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeecccccccccHH
Confidence 468899999998888886642 22 499999999999999999999985432 345666665432211111
Q ss_pred HHHH------------HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEE
Q 016800 132 TKIK------------TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRF 188 (382)
Q Consensus 132 ~~l~------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~ 188 (382)
..+. .+... .. ...+.+++|||++.++++.++.|++.+++.. .++.|
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~-~~---------~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ii 163 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEA-VR---------RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVI 163 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHH-HH---------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEE
T ss_pred HhcCCCCccccccccchHHHH-HH---------hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEE
Confidence 1110 00000 00 0145799999999999999999999999864 35668
Q ss_pred EEeecC--------------------------ccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh---------CC
Q 016800 189 FFICNY--------------------------ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GL 232 (382)
Q Consensus 189 Il~~~~--------------------------~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~ 232 (382)
|+++|. ...+.+.+.+|+. .+.|.|++.+++..++...+.+. .+
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 243 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISL 243 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEE
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 999987 4467889999995 89999999999999988866542 34
Q ss_pred CCCHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Q 016800 233 NLDAEALSTLSSIS---QGDLRRAITYLQGAAR 262 (382)
Q Consensus 233 ~~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~ 262 (382)
.+++++++.+++.+ .||.|.+.+.++.+..
T Consensus 244 ~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 244 ELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp EECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred EeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 58999999999976 4999999988887654
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=157.23 Aligned_cols=221 Identities=17% Similarity=0.112 Sum_probs=141.9
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC-----CCCC--------------
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-----ELYK-------------- 113 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~-----~~~~-------------- 113 (382)
..-+|.+|++++|++.++..+..........++||+||||||||++|+++++.+... ...+
T Consensus 16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (350)
T 1g8p_A 16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL 95 (350)
T ss_dssp --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence 344678999999999988776655554445579999999999999999999987420 0000
Q ss_pred --------CceEEeecCCCcchHHHHHH--HH-HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc
Q 016800 114 --------SRVLELNASDDRGINVVRTK--IK-TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (382)
Q Consensus 114 --------~~~~~~~~~~~~~~~~~~~~--l~-~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 182 (382)
..++...... ....+... +. .+....... ..+....+...+++|||++.++.+.++.|+..+++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~--~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 96 STNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAF--EPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp CCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGE--ECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred ccccccCCCcccccCCCc--chhhheeechhhhhhcCCceee--cCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 0111111110 01111000 00 000000000 000000013579999999999999999999999974
Q ss_pred -------------CCceEEEEeecCcc-ccchhhhcccce-EEecCCC-HHHHHHHHHHH--------------------
Q 016800 183 -------------SKVTRFFFICNYIS-RIIEPLASRCAK-FRFKPLS-EEVMSSRVLHI-------------------- 226 (382)
Q Consensus 183 -------------~~~~~~Il~~~~~~-~l~~~l~sr~~~-i~~~~~~-~~~~~~~l~~~-------------------- 226 (382)
+..+.+|.++|... .+.+++.+||.. +.+++|+ .++...++..+
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMD 251 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHH
Confidence 23566777788644 789999999985 9999995 44444555441
Q ss_pred ---------HHHhCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHhc---C-CCCChhhHhhhh
Q 016800 227 ---------CNEEGLNLDAEALSTLSSISQG----DLRRAITYLQGAARLF---G-SSITSKDLISVS 277 (382)
Q Consensus 227 ---------~~~~~~~~~~~~~~~l~~~s~g----dlr~a~~~l~~~~~~~---~-~~It~~~v~~~~ 277 (382)
....++.+++++++.|++.+.+ ++|.++++++.+...+ + ..|+.+++.+++
T Consensus 252 ~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~ 319 (350)
T 1g8p_A 252 IRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVA 319 (350)
T ss_dssp HHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 2223567999999999988865 8999999998766544 3 458888876654
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-17 Score=154.70 Aligned_cols=204 Identities=19% Similarity=0.243 Sum_probs=136.2
Q ss_pred CC-CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 56 RP-KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 56 ~p-~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
+| .+|+|+.|.+++++.|...+.. | +.|. +|||||||||||++|+++|.++ +..++.+++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~ 276 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIG 276 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEG
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEh
Confidence 34 4899999999999998876521 2 3333 9999999999999999999998 456777776
Q ss_pred CCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--C
Q 016800 122 SDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY--S 183 (382)
Q Consensus 122 ~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~--~ 183 (382)
++... ...-...+...+...... .+.||+|||+|.+.. ...+.|+..|+.. .
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~----------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTK----------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHT----------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhc----------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 54321 111112222222222211 457999999998731 1234556666643 3
Q ss_pred CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHH
Q 016800 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
..+.+|++||.++.+++++++ |+. .++|+.|+.++..++++..++... ++.+ .++.|++.+.| +-..+.+++.
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~ 424 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVCT 424 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 467788899999999999987 887 899999999999999988776543 3322 36778887765 3333334444
Q ss_pred HHHHhc----CCCCChhhHhhhh
Q 016800 259 GAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~~ 277 (382)
.++..+ ...|+.+++..++
T Consensus 425 eAa~~Air~~~~~it~~Df~~Al 447 (467)
T 4b4t_H 425 EAGMFAIRARRKVATEKDFLKAV 447 (467)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHH
T ss_pred HHHHHHHHcCCCccCHHHHHHHH
Confidence 444332 3456766655443
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=150.74 Aligned_cols=202 Identities=19% Similarity=0.238 Sum_probs=136.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.|...+.. | ..|. +|||||||||||++|+++|.++ +..++.+++++.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l 252 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSEL 252 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGG
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHh
Confidence 5899999999999988776632 2 2233 9999999999999999999998 456777776543
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY--SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~--~~~~ 186 (382)
.. ...-...+...+...... .+.||+|||+|.+.. ...+.|+..++.. ...+
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~----------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~V 322 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGEN----------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDV 322 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHT----------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSE
T ss_pred hhccCchHHHHHHHHHHHHHhc----------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCE
Confidence 21 111122222222222211 457999999998731 2345566666643 3567
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGAA 261 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~~ 261 (382)
.+|++||.++.+++++++ |+. .|.|+.|+.++..++++..+++.. ++++ .++.|++.+.| +-.++.+++..++
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~~eA~ 400 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADIQAMCTEAG 400 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 889999999999999998 776 799999999999999988776544 3332 37788887755 3333344444444
Q ss_pred Hhc----CCCCChhhHhhhh
Q 016800 262 RLF----GSSITSKDLISVS 277 (382)
Q Consensus 262 ~~~----~~~It~~~v~~~~ 277 (382)
..+ ...|+.+++..++
T Consensus 401 ~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 401 LLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp HHHHHTTCSCBCHHHHHHHH
T ss_pred HHHHHcCCCccCHHHHHHHH
Confidence 333 3457777765544
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=153.35 Aligned_cols=202 Identities=22% Similarity=0.241 Sum_probs=135.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.+...+.. | ..|. +|||||||||||++|+++|+++ +..++.+++++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l 242 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEF 242 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGT
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchh
Confidence 4899999999999988776632 2 2233 9999999999999999999998 466777777643
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------------HHHHHHHHHHHHhc--CCce
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY--SKVT 186 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------------~~~~~~Ll~~le~~--~~~~ 186 (382)
.+ ...-...+...+...... .+.|++|||+|.+. ....+.|+..|+.. ..++
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~----------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v 312 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLAREN----------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV 312 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHT----------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSE
T ss_pred hccccchhHHHHHHHHHHHHHc----------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCE
Confidence 21 111122223222222211 45799999998651 12356777778754 4567
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEec-CCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHH
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFK-PLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYLQGA 260 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~g-dlr~a~~~l~~~ 260 (382)
.+|++||.++.+++++++ |+. .|.|+ +|+.++...+++..+++.. ++++ .++.++..+.| +...+.+++..+
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~sgadi~~l~~eA 390 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSLSGAVIAAIMQEA 390 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 788999999999999997 676 78996 6888898899888776544 3332 37788887755 333444444444
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
+..+ ...|+.+++.+++
T Consensus 391 ~~~a~r~~~~~i~~~d~~~A~ 411 (428)
T 4b4t_K 391 GLRAVRKNRYVILQSDLEEAY 411 (428)
T ss_dssp HHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHH
Confidence 4333 3457766665543
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=144.37 Aligned_cols=165 Identities=18% Similarity=0.181 Sum_probs=119.0
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~~~ 123 (382)
..+|.++++|..|++++|+++.++.+..++..+...+++|+||+|+|||++++.+++.+.+... ....++.+++..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 4689999999999999999999999999998877777999999999999999999998754211 123445554322
Q ss_pred C----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------HHHHHHHHHHhcCCceEEEEe
Q 016800 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------AQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 124 ~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------~~~~Ll~~le~~~~~~~~Il~ 191 (382)
. .........+..+....... ++..+|+|||+|.+... .++.|..+++. ..+.+|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~ 157 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAKQ---------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGA 157 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHHS---------TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEE
T ss_pred HhccCCccccHHHHHHHHHHHHhhc---------CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEe
Confidence 1 11222222333332211111 15679999999999632 36677777765 34567888
Q ss_pred ecCcc-----ccchhhhcccceEEecCCCHHHHHHHH
Q 016800 192 CNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 192 ~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
++... .+.+++.+|+..+.|++|+.++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 87665 678999999999999999999987764
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-17 Score=154.89 Aligned_cols=200 Identities=24% Similarity=0.254 Sum_probs=143.3
Q ss_pred CCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
+.+|++++|++++++.+...+.. .+.| +++|+||||||||+++++++... +..++.+++++.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~~ 85 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSDF 85 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHHH
Confidence 45899999999999888776542 1233 39999999999999999999987 345666766542
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--
Q 016800 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY-- 182 (382)
Q Consensus 125 ~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~-- 182 (382)
. +...++..+.... .. .+.||+|||+|.+.. ..++.|+..++..
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~----~~----------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAK----AH----------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHH----HT----------CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred HHHHhcccHHHHHHHHHHHH----hc----------CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 1 1122333222211 11 457999999998743 2457777777743
Q ss_pred CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCCCH-HHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQGDL-RRAITYL 257 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~gdl-r~a~~~l 257 (382)
...+.+|.+||.++.+.+.+.+ |+. .+.+++|+.++..++++..++... +.++ .+..++..+.|+. +.+.+++
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~lv 229 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLV 229 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHHHH
Confidence 3467788889999889888876 776 889999999999999887776543 3333 3777899998877 6777777
Q ss_pred HHHHHhc----CCCCChhhHhhhhC
Q 016800 258 QGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 258 ~~~~~~~----~~~It~~~v~~~~~ 278 (382)
..++..+ ...|+.+++..++.
T Consensus 230 ~~Aal~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 230 NEAALLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHH
Confidence 7766554 35789888877663
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=146.82 Aligned_cols=213 Identities=18% Similarity=0.166 Sum_probs=138.6
Q ss_pred CCCcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
+|++++|+...+..+.+.+.. ....+++|+||+|||||++|+++++..... ...++.+++.... .+.+...+-.
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~~~v~~~~~~-~~~~~~~l~g 79 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAALN-ENLLDSELFG 79 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT---TSCEEEEEGGGSC-HHHHHHHHHC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc---CCCeEEEecCCCC-hhHHHHHhcC
Confidence 688999998888777666543 223459999999999999999999876322 2467788877542 2222221100
Q ss_pred HHHhhhcCCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecCc-------c
Q 016800 137 FAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI-------S 196 (382)
Q Consensus 137 ~~~~~~~~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~-------~ 196 (382)
.......+.. ..+.+......+|+|||++.++.+.++.|+..+++. +..+++|+++|.. .
T Consensus 80 ~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~ 159 (265)
T 2bjv_A 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEG 159 (265)
T ss_dssp CC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHT
T ss_pred CcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcC
Confidence 0000000000 000000113469999999999999999999999974 3457889998874 1
Q ss_pred ccchhhhcccc--eEEecCCCH--HHHHHHHH----HHHHHhCC----CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 016800 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVL----HICNEEGL----NLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (382)
Q Consensus 197 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~----~~~~~~~~----~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~ 263 (382)
.+.+.+.+|+. .+.++++.. +++..++. ..+...+. .+++++++.+.... .||+|.+.+.++.+...
T Consensus 160 ~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 160 TFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp SSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 35688999985 577888775 56665544 44444554 68999999998775 89999999999988765
Q ss_pred c-CCCCChhhHhh
Q 016800 264 F-GSSITSKDLIS 275 (382)
Q Consensus 264 ~-~~~It~~~v~~ 275 (382)
+ +..|+.+++..
T Consensus 240 ~~~~~i~~~~l~~ 252 (265)
T 2bjv_A 240 HGTSDYPLDDIII 252 (265)
T ss_dssp HCCSSSCBCCCCS
T ss_pred CCCCcCcHHHcch
Confidence 5 55788777643
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-18 Score=172.74 Aligned_cols=206 Identities=17% Similarity=0.190 Sum_probs=144.2
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCC
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~ 123 (382)
..+|.++++|..|++++|+++.+..+...+..+..++++|+||||||||++++.+++.+.+.. ..+..++.+++..
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 357999999999999999999999999999888877899999999999999999999874321 1244566666644
Q ss_pred Ccc----hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHHhcCCceEEEEe
Q 016800 124 DRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 124 ~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
... .......+.......... ++..|++|||+|.+. .+..+.|...++.. ...+|.+
T Consensus 237 l~~g~~~~g~~~~~l~~~~~~~~~~---------~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~a 305 (854)
T 1qvr_A 237 LLAGAKYRGEFEERLKAVIQEVVQS---------QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGA 305 (854)
T ss_dssp ---------CHHHHHHHHHHHHHTT---------CSSEEEEECCC-------------------HHHHHTT--CCCEEEE
T ss_pred hhccCccchHHHHHHHHHHHHHHhc---------CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEe
Confidence 311 112222233322222111 145799999999996 45567788888753 4557777
Q ss_pred ecCcc----ccchhhhcccceEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHHHHH
Q 016800 192 CNYIS----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAITYL 257 (382)
Q Consensus 192 ~~~~~----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s~g------dlr~a~~~l 257 (382)
++... .+.+++.+||+.+.|++|+.++...+++.++. ..++.++++++..+++.+.| -+..++.++
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ll 385 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLI 385 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHH
Confidence 77553 36899999999999999999999999987665 34788999999999987733 388899988
Q ss_pred HHHHHhc
Q 016800 258 QGAARLF 264 (382)
Q Consensus 258 ~~~~~~~ 264 (382)
+.++...
T Consensus 386 dea~a~~ 392 (854)
T 1qvr_A 386 DEAAARL 392 (854)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777543
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-17 Score=164.66 Aligned_cols=198 Identities=16% Similarity=0.195 Sum_probs=142.8
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeec
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~ 121 (382)
.-..+|.++++|..+++++|+++.++.+...+.....+|+||+||||||||++|+++++.+.+.+ ..+..++.++.
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 34568999999999999999999999999999988888899999999999999999999985422 12334454444
Q ss_pred CCC-c--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc--
Q 016800 122 SDD-R--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-- 196 (382)
Q Consensus 122 ~~~-~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~-- 196 (382)
... . ....++..+..... . ++.|++|| .+.+.++.|+..++. ..+.+|.+||...
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~----~----------~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~ 304 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQ----A----------GNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYR 304 (758)
T ss_dssp --------CTTHHHHHHHHHT----C----------CCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTH
T ss_pred cccccchHHHHHHHHHHHHHh----c----------CCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHH
Confidence 110 0 01122333322221 1 45699999 455678888888874 4567888888766
Q ss_pred ---ccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHHHHh
Q 016800 197 ---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQ------GDLRRAITYLQGAARL 263 (382)
Q Consensus 197 ---~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~------gdlr~a~~~l~~~~~~ 263 (382)
.+.+++++||..+.|++|+.++...++..++.. .++.++++++..++..+. ..++.++.+++.++..
T Consensus 305 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (758)
T ss_dssp HHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHH
Confidence 588999999999999999999999999877655 677899999999988763 3467888888877653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-17 Score=145.31 Aligned_cols=187 Identities=20% Similarity=0.208 Sum_probs=128.6
Q ss_pred cCCCCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 55 YRPKQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
..+.+|++++|++.+++.+..++.. + ..+ +++|+||||||||++|+++++.+ ...++.+++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~ 82 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKG 82 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEh
Confidence 3456899999999999999887753 1 223 39999999999999999999987 345666665
Q ss_pred CCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHh
Q 016800 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMET 181 (382)
Q Consensus 122 ~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~ 181 (382)
.+.. ....++..+... ... .+.+++|||+|.+... .++.|+..++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a----~~~----------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKA----RQA----------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHH----HHT----------CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred HHHHhhhcCchHHHHHHHHHHH----Hhc----------CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 4311 011122222211 111 4579999999987543 36788888884
Q ss_pred c--CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHH
Q 016800 182 Y--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (382)
Q Consensus 182 ~--~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~ 255 (382)
. ..++.+|.+||.++.+.+++.+ |+. .+.|++|+.++..++++..++..+.. .+..++.++..+.| ..+.+.+
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHH
Confidence 3 4567888999999999999988 886 89999999999999998888765542 12224556666644 2334444
Q ss_pred HHHHHHH
Q 016800 256 YLQGAAR 262 (382)
Q Consensus 256 ~l~~~~~ 262 (382)
+++.++.
T Consensus 228 l~~~a~~ 234 (301)
T 3cf0_A 228 ICQRACK 234 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-18 Score=165.21 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=136.9
Q ss_pred CcccCcHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
++++|++++.+.+...+.. .+.++++|+||||||||+++++++..+ ...+..+++.............
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------GRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------TCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEecccchhhhhhhHH
Confidence 4588999998877655431 234469999999999999999999988 2345555554322111111000
Q ss_pred HHHHHhhhcCCC-CCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHHHhcC---------------CceEEEEeecC
Q 016800 135 KTFAAVAVGSGQ-RRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETYS---------------KVTRFFFICNY 194 (382)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~~~vliiDe~d~l~~~----~~~~Ll~~le~~~---------------~~~~~Il~~~~ 194 (382)
..+......... ..... .....+++|||++.++.+ .++.|++.|+... .++.||+++|.
T Consensus 155 ~~~ig~~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~ 233 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANN 233 (543)
T ss_dssp ---------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSS
T ss_pred HHHhccCchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCc
Confidence 000000000000 00000 013349999999999877 4588888887432 45688999999
Q ss_pred ccccchhhhcccceEEecCCCHHHHHHHHHHHHH-----Hh-----CCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 016800 195 ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN-----EE-----GLNLDAEALSTLSSIS--QGDLRRAITYLQGAAR 262 (382)
Q Consensus 195 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~~s--~gdlr~a~~~l~~~~~ 262 (382)
...+.+++++|+.++.|++|+.++...++...+. .. ++.++++++..++... .|++|.+.+.++.++.
T Consensus 234 ~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 234 LATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp TTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred cccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 9999999999999999999999999998887552 22 3457899999988744 3788888877776554
Q ss_pred hc----------CCCCChhhHhhhhCCC
Q 016800 263 LF----------GSSITSKDLISVSGVI 280 (382)
Q Consensus 263 ~~----------~~~It~~~v~~~~~~~ 280 (382)
.+ ...|+.+++..+++..
T Consensus 314 ~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 314 KAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 32 1247888888877544
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-17 Score=165.99 Aligned_cols=220 Identities=16% Similarity=0.155 Sum_probs=156.5
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeec
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~ 121 (382)
.-..+|.++++|..|++++|++..++.+.+.+......+++|+||||||||++++.+++.+.+... ....++.++.
T Consensus 171 ~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp SSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred HHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 456789999999999999999999999999998887778999999999999999999998854321 1223444433
Q ss_pred CCC----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHHHhcCCceEE
Q 016800 122 SDD----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 122 ~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~ 188 (382)
... .........+.......... +..+++|||++.+ ..+..+.|..+++. ....+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~----------~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~ 318 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQD----------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRV 318 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSS----------SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEE
T ss_pred HHHhccccccchHHHHHHHHHHHHHhc----------CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEE
Confidence 221 11112222233322221111 4579999999998 23445556566554 35567
Q ss_pred EEeecCc-----cccchhhhcccceEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHH
Q 016800 189 FFICNYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRA 253 (382)
Q Consensus 189 Il~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~g------dlr~a 253 (382)
|.+++.. ..+.+++.+|+..+.|++|+.++...++..++.. .++.++++++..++..+.| .+..+
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 7777653 2456889999999999999999999999887765 6788999999999887643 45678
Q ss_pred HHHHHHHHHhc--------CCCCChhhHhhhh
Q 016800 254 ITYLQGAARLF--------GSSITSKDLISVS 277 (382)
Q Consensus 254 ~~~l~~~~~~~--------~~~It~~~v~~~~ 277 (382)
+.+++.++... ...++.+++.+++
T Consensus 399 i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 88887665432 2457877777665
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=145.87 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=142.5
Q ss_pred CcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
++++|+...++.+...+.. ....+++|+||||||||++|+++++..... ...++.+++.... ...+...+ .
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~---~~~~v~v~~~~~~-~~l~~~~l---f 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS---DRPLVTLNCAALN-ESLLESEL---F 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS---SSCCCEEECSSCC-HHHHHHHH---T
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc---CCCeEEEeCCCCC-hHHHHHHh---c
Confidence 3688988888777776654 233359999999999999999999975322 3467778887642 22221111 1
Q ss_pred Hhhhc--CCC---CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCc-------
Q 016800 139 AVAVG--SGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------- 195 (382)
Q Consensus 139 ~~~~~--~~~---~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~------- 195 (382)
....+ .+. ..+.+......+++|||++.++.+.+..|+..+++.. ..+++|++||..
T Consensus 75 g~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~ 154 (304)
T 1ojl_A 75 GHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSA 154 (304)
T ss_dssp CCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHH
T ss_pred CccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHh
Confidence 00000 000 0000001134599999999999999999999999753 457889988864
Q ss_pred cccchhhhcccc--eEEecCCC--HHHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh
Q 016800 196 SRIIEPLASRCA--KFRFKPLS--EEVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (382)
Q Consensus 196 ~~l~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~----~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~ 263 (382)
..+.+.+.+|+. .+.++|+. .+++..++...+ ...+ ..+++++++.+...+ .||+|.+.+.++.++..
T Consensus 155 g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 155 GRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp TSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 134567888875 46787777 466666555443 3333 468999999999988 99999999999998876
Q ss_pred c-CCCCChhhHhhhh
Q 016800 264 F-GSSITSKDLISVS 277 (382)
Q Consensus 264 ~-~~~It~~~v~~~~ 277 (382)
+ +..|+.+++...+
T Consensus 235 ~~~~~i~~~~l~~~~ 249 (304)
T 1ojl_A 235 LTGEYISERELPLAI 249 (304)
T ss_dssp CCSSSBCGGGSCGGG
T ss_pred CCCCcccHHhhhhhh
Confidence 6 4678888775443
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=140.14 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=112.5
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceEEeec
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~----~~~~~~~~~~ 121 (382)
.-..+|.++|+|..|++++|++..++.+..++..+...+++|+||+|+|||++++.+++.+.+... ....++.+++
T Consensus 7 ~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 7 KYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred HHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 345689999999999999999999999999998877777999999999999999999998744211 1234444443
Q ss_pred CCC----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEE
Q 016800 122 SDD----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRF 188 (382)
Q Consensus 122 ~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~ 188 (382)
... .........+..+....... ++..+++|||++.+. .+..+.|...++. ..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~i 155 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDA---------EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRC 155 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHT---------TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhc---------CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeE
Confidence 221 01122222222222111111 145799999999986 4556777777765 45668
Q ss_pred EEeecCcc-----ccchhhhcccceEEecCCC
Q 016800 189 FFICNYIS-----RIIEPLASRCAKFRFKPLS 215 (382)
Q Consensus 189 Il~~~~~~-----~l~~~l~sr~~~i~~~~~~ 215 (382)
|++++... .+.+++++||..+.+++|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 88887654 5789999999999998875
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=152.79 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=136.6
Q ss_pred hhcCCCCCCcccCcHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe
Q 016800 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~ 119 (382)
+...+..|++++|++..++.+..++.. ....++||+||||||||++|+++++.+ +..++.+
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~v 269 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLI 269 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEE
Confidence 456678899999999999998887753 223349999999999999999999986 4567777
Q ss_pred ecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHHHhc--CC
Q 016800 120 NASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY--SK 184 (382)
Q Consensus 120 ~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~--~~ 184 (382)
++.+... .......+.......... ...+|+|||+|.+. ...++.|+..|+.. ..
T Consensus 270 n~~~l~~~~~g~~~~~~~~~f~~A~~~----------~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 270 NGPEIMSKLAGESESNLRKAFEEAEKN----------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp EHHHHHTSCTTHHHHHHHHHHHHHHHT----------CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred EchHhhhhhcchhHHHHHHHHHHHHhc----------CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 7643211 111112222222222111 45799999997664 35688999999964 34
Q ss_pred ceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHH
Q 016800 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGA 260 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd-lr~a~~~l~~~ 260 (382)
.+++|.+||.+..+.+.+++ |+. .+.|++|+.++..++|...++..... .+..+..++..+.|. .+.+.+++..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A 418 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEA 418 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHH
Confidence 67788889999999999998 665 79999999999999998877654433 223467788888774 44444455555
Q ss_pred HHhc
Q 016800 261 ARLF 264 (382)
Q Consensus 261 ~~~~ 264 (382)
+..+
T Consensus 419 ~~~a 422 (489)
T 3hu3_A 419 ALQA 422 (489)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-18 Score=154.92 Aligned_cols=205 Identities=21% Similarity=0.223 Sum_probs=137.1
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
++.+..|++++|++.+++.+...+.. ...+ +++|+||||||||++|+++++.+..+ ++.+++
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~------~~~v~~ 77 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP------FFSMGG 77 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC------CCCCCS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC------EEEech
Confidence 44567899999999988888776651 2223 49999999999999999999987432 333333
Q ss_pred CCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH---------------HHHHHHHHHH
Q 016800 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---------------AQNALRRTME 180 (382)
Q Consensus 122 ~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~---------------~~~~Ll~~le 180 (382)
.+.. +...++..+..... ..+.+|+|||+|.+... .++.|+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKK--------------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHH--------------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred HHHHHhhcchHHHHHHHHHHHHHh--------------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence 3211 00111111111110 04469999999998643 2455666666
Q ss_pred hcC---CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHH
Q 016800 181 TYS---KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRA 253 (382)
Q Consensus 181 ~~~---~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a 253 (382)
... ..+.+|.++|.+..+.+.+.+ |+. .+.|++|+.++...++...++..... ++..+..++..+.| ..+.+
T Consensus 144 ~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl 222 (268)
T 2r62_A 144 GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADL 222 (268)
T ss_dssp CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHH
T ss_pred CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHH
Confidence 543 236678888888888889988 664 78999999999999998877544321 22235667777766 45577
Q ss_pred HHHHHHHHHhc----CCCCChhhHhhhhCC
Q 016800 254 ITYLQGAARLF----GSSITSKDLISVSGV 279 (382)
Q Consensus 254 ~~~l~~~~~~~----~~~It~~~v~~~~~~ 279 (382)
.++++.+...+ ...|+.+++..++..
T Consensus 223 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 223 ANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 77777766654 357899988887754
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=142.50 Aligned_cols=181 Identities=13% Similarity=0.192 Sum_probs=118.7
Q ss_pred CcccCcHHHHHHH-------HHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc---ch
Q 016800 61 KDVAHQEEVVRVL-------TNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR---GI 127 (382)
Q Consensus 61 ~~~~g~~~~~~~l-------~~~l~---~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~---~~ 127 (382)
..++|+....+.+ .+.+. .....++||+||||||||++|+++++.+ ...++.+++++.. ..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~------~~~~~~i~~~~~~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeCHHHhcCCch
Confidence 4566765554333 33444 2223349999999999999999999986 3456666665321 11
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC----------CHHHHHHHHHHHHh---cCCceEEEEeecC
Q 016800 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM----------TEDAQNALRRTMET---YSKVTRFFFICNY 194 (382)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l----------~~~~~~~Ll~~le~---~~~~~~~Il~~~~ 194 (382)
......+.......... +..+|+|||+|.+ .....+.|...++. ....+.+|.++|.
T Consensus 107 ~~~~~~~~~~~~~~~~~----------~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAYKS----------QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp HHHHHHHHHHHHHHHTS----------SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred HHHHHHHHHHHHHHHhc----------CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 11111222222211111 5689999999887 44556666666664 3345567777887
Q ss_pred ccccch-hhhccc-ceEEecCCCH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHHHH
Q 016800 195 ISRIIE-PLASRC-AKFRFKPLSE-EVMSSRVLHICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQGAAR 262 (382)
Q Consensus 195 ~~~l~~-~l~sr~-~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-----dlr~a~~~l~~~~~ 262 (382)
+..+.+ .+.+|+ ..+.|++++. +++..++.. .+ .++++++..+++.+.| |+|.+++.++.+..
T Consensus 177 ~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 177 KDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----LG-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp HHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----HT-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred hhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----cC-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 776666 678885 5889988887 676666643 22 4789999999999988 99999999987654
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=147.36 Aligned_cols=205 Identities=18% Similarity=0.205 Sum_probs=134.5
Q ss_pred CcccCcHHHHHHHHHHHH----c-------------------------C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 61 KDVAHQEEVVRVLTNTLE----T-------------------------A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~----~-------------------------~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
+.++||+++++.+...+. . . ...+++|+||||||||++|+++++.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~--- 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD--- 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC---
Confidence 357899999998887762 1 1 234599999999999999999999872
Q ss_pred CCCCceEEeecCCCcch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HH
Q 016800 111 LYKSRVLELNASDDRGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQ 172 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~ 172 (382)
..++.+++...... ......+......... ......+.+++|||++.+... .+
T Consensus 98 ---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~ 168 (376)
T 1um8_A 98 ---IPIAISDATSLTEAGYVGEDVENILTRLLQASDW------NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQ 168 (376)
T ss_dssp ---CCEEEEEGGGCC--------CTHHHHHHHHHTTT------CHHHHTTSEEEEETGGGC--------------CHHHH
T ss_pred ---CCEEEecchhhhhcCcCCccHHHHHHHHHhhccc------hhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHH
Confidence 34566665432110 1111122222111100 000014569999999999887 89
Q ss_pred HHHHHHHHhcC---------------------CceEEEEeecC-------------------------------------
Q 016800 173 NALRRTMETYS---------------------KVTRFFFICNY------------------------------------- 194 (382)
Q Consensus 173 ~~Ll~~le~~~---------------------~~~~~Il~~~~------------------------------------- 194 (382)
+.|+++|++.. .+..||+++|.
T Consensus 169 ~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~ 248 (376)
T 1um8_A 169 QALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQT 248 (376)
T ss_dssp HHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCH
T ss_pred HHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCH
Confidence 99999999641 33456666551
Q ss_pred ----ccccchhhhccc-ceEEecCCCHHHHHHHHHH----HHH-------Hh--CCCCCHHHHHHHHHhcC---CCHHHH
Q 016800 195 ----ISRIIEPLASRC-AKFRFKPLSEEVMSSRVLH----ICN-------EE--GLNLDAEALSTLSSISQ---GDLRRA 253 (382)
Q Consensus 195 ----~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~----~~~-------~~--~~~~~~~~~~~l~~~s~---gdlr~a 253 (382)
...+.+.+.+|+ .++.|++++.+++..++.. +++ .. ++.+++++++.|++.+. |+.|.+
T Consensus 249 ~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L 328 (376)
T 1um8_A 249 HDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGL 328 (376)
T ss_dssp HHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGH
T ss_pred HHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHH
Confidence 113568889999 5899999999999998862 211 11 34689999999999865 999999
Q ss_pred HHHHHHHHHhc-----C-----CCCChhhHhhhh
Q 016800 254 ITYLQGAARLF-----G-----SSITSKDLISVS 277 (382)
Q Consensus 254 ~~~l~~~~~~~-----~-----~~It~~~v~~~~ 277 (382)
.+.++.+.... + ..||.++|....
T Consensus 329 ~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 329 RAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 99998876531 1 136777776644
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=162.17 Aligned_cols=185 Identities=20% Similarity=0.305 Sum_probs=134.7
Q ss_pred CcccCcHHHHHHHHHHHHcCC-------CC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHH-
Q 016800 61 KDVAHQEEVVRVLTNTLETAN-------CP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV- 130 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~- 130 (382)
++++|++.+++.+...+...+ .| ++||+||||||||++|+++++.+.+. ...++.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccccc
Confidence 568899999988888876432 12 59999999999999999999998543 246777777543211000
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCceEEEEeecCccc--
Q 016800 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYISR-- 197 (382)
Q Consensus 131 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~~-- 197 (382)
...+...... .++.||+|||++.++++.++.|++.|++. ..+++||++||.+..
T Consensus 568 ~~~l~~~~~~-------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 568 GGQLTEKVRR-------------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp ---CHHHHHH-------------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred cchhhHHHHh-------------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence 0111111111 14569999999999999999999999983 356789999985432
Q ss_pred ----------cchhhhccc-ceEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHhc---CCCHHHHH
Q 016800 198 ----------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEALSTLSSIS---QGDLRRAI 254 (382)
Q Consensus 198 ----------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~s---~gdlr~a~ 254 (382)
+.+.+.+|+ .++.|+|++.+++..++...+... .+.+++++++.|++.+ .|+.|.+.
T Consensus 635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 714 (758)
T 3pxi_A 635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLR 714 (758)
T ss_dssp HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHH
T ss_pred HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHH
Confidence 678999999 599999999999999988876542 3458999999998753 57788877
Q ss_pred HHHHHHH
Q 016800 255 TYLQGAA 261 (382)
Q Consensus 255 ~~l~~~~ 261 (382)
+.++...
T Consensus 715 ~~i~~~v 721 (758)
T 3pxi_A 715 RAIQKHV 721 (758)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 7777543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-16 Score=148.13 Aligned_cols=208 Identities=24% Similarity=0.240 Sum_probs=142.3
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEE
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~ 118 (382)
|.+. .+.+|++++|+++++..+.+.+.. ...+ +++|+||||||||+++++++..+. ..++.
T Consensus 22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~ 94 (499)
T 2dhr_A 22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFIT 94 (499)
T ss_dssp ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEE
T ss_pred eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEE
Confidence 4444 567999999999998887766532 1223 399999999999999999999872 45667
Q ss_pred eecCCCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc
Q 016800 119 LNASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY 182 (382)
Q Consensus 119 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~ 182 (382)
+++.+... .......+......... ....+++|||+|.+.. ...+.|+..|+..
T Consensus 95 i~g~~~~~~~~g~~~~~v~~lfq~a~~----------~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 95 ASGSDFVEMFVGVGAARVRDLFETAKR----------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp EEGGGGTSSCTTHHHHHHHHHTTTSSS----------SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred EehhHHHHhhhhhHHHHHHHHHHHHHh----------cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 77654211 11122223222221110 1346999999987732 2345566555543
Q ss_pred C--CceEEEEeecCccccchhhhcc--cc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHH
Q 016800 183 S--KVTRFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAIT 255 (382)
Q Consensus 183 ~--~~~~~Il~~~~~~~l~~~l~sr--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gdl-r~a~~ 255 (382)
. ..+.++.++|.++.+.+++.++ +. .+.+++|+.++..++++..++ +..+++++ +..++..+.|+. +.+.+
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~ 242 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLEN 242 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHH
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHH
Confidence 2 3456677778888899999884 44 899999999999999876553 34455443 788999999987 78888
Q ss_pred HHHHHHHhc----CCCCChhhHhhhh
Q 016800 256 YLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 256 ~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
++..++..+ ...|+.+++..++
T Consensus 243 lv~~Aa~~A~~~~~~~It~~dl~~al 268 (499)
T 2dhr_A 243 LLNEAALLAAREGRRKITMKDLEEAA 268 (499)
T ss_dssp HHHHHHHHHTTTCCSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCHHHHHHHH
Confidence 888777654 2469988887766
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=132.84 Aligned_cols=206 Identities=24% Similarity=0.240 Sum_probs=135.1
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHc-----------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLET-----------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
...+.+|++++|.++++..+.+.... -..+ +++|+||+|+||||++++++..+. ..++.+++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~~ 82 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 82 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeeH
Confidence 34456899999999888777665432 1222 399999999999999999999872 34455554
Q ss_pred CCCc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcC--
Q 016800 122 SDDR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS-- 183 (382)
Q Consensus 122 ~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~-- 183 (382)
.+.. ........+.......... ...++++||+|.+.. ...+.++..++...
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKRH----------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTTS----------SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhc----------CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 3210 0111122222222221111 347999999976521 12355666665433
Q ss_pred CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHHH
Q 016800 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQ 258 (382)
Q Consensus 184 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gdl-r~a~~~l~ 258 (382)
....++.+++.+..+.+.+.+ |+. .+.+++|+.++..++++..++ +..++++. +..++..+.|+. +.+.+.+.
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 334566677888999999998 554 789999999999999987664 34454443 778899998865 67777777
Q ss_pred HHHHhc----CCCCChhhHhhhh
Q 016800 259 GAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~~ 277 (382)
.++..+ ...|+.+++++++
T Consensus 231 ~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 231 EAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHhcCCCcCHHHHHHHh
Confidence 666544 2468888887654
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=157.60 Aligned_cols=183 Identities=21% Similarity=0.256 Sum_probs=133.7
Q ss_pred CcccCcHHHHHHHHHHHHcC--------CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc-----
Q 016800 61 KDVAHQEEVVRVLTNTLETA--------NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG----- 126 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~--------~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~----- 126 (382)
.+++|+++++..+...+... ++ .++||+||||||||++|+++++.+ ...++.++++....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSCCS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEEechhhcchhhHh
Confidence 46889999998887777532 11 249999999999999999999988 24456666543211
Q ss_pred ---------hHH-HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------Cc
Q 016800 127 ---------INV-VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KV 185 (382)
Q Consensus 127 ---------~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~ 185 (382)
+.. ....+...... .++.||+|||++.++++.++.|++.|++.. .+
T Consensus 532 ~l~g~~~g~~g~~~~~~l~~~~~~-------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQGGLLTDAVIK-------------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSCCCCSCSHHHHHTTHHHHHHHH-------------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhcCCCCCCcCccccchHHHHHHh-------------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 000 00111111111 156899999999999999999999999753 45
Q ss_pred eEEEEeecCcc-------------------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh---------
Q 016800 186 TRFFFICNYIS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE--------- 230 (382)
Q Consensus 186 ~~~Il~~~~~~-------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~--------- 230 (382)
+.||+++|... .+.+.+.+|+. ++.|++++.+++..++...+.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 77899998643 56789999994 89999999999999998877632
Q ss_pred CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHH
Q 016800 231 GLNLDAEALSTLSSIS---QGDLRRAITYLQGAAR 262 (382)
Q Consensus 231 ~~~~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~ 262 (382)
.+.+++++++.+++.+ .++.|.+.+.++....
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 2468999999999876 4457777777776553
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.7e-15 Score=138.18 Aligned_cols=231 Identities=16% Similarity=0.192 Sum_probs=147.6
Q ss_pred cccCCchhhhhcCCCCCCcccCcHHHHHHHHHHH-Hc---C---CCCcEEE--eCCCCCCHHHHHHHHHHHhcCCC---C
Q 016800 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ET---A---NCPHMLF--YGPPGTGKTTTALAIAHQLFGPE---L 111 (382)
Q Consensus 44 ~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l-~~---~---~~~~lll--~Gp~G~GKt~la~~la~~l~~~~---~ 111 (382)
.+....++..+|.| ++++|+++.++.+..++ .. + ...+++| +||+|+|||++++.+++.+.... .
T Consensus 8 i~~~~~~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 84 (412)
T 1w5s_A 8 LFKDRRVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEG 84 (412)
T ss_dssp CBSCGGGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccHhhcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccC
Confidence 44566777777777 67899999888888777 42 2 3335888 99999999999999998863210 0
Q ss_pred CCCceEEeecCCCcchHH-HHHHHHHHHHhhhcCCCCCCC--------C-CCCCcEEEEEeCCCCCC------HHHHHHH
Q 016800 112 YKSRVLELNASDDRGINV-VRTKIKTFAAVAVGSGQRRGG--------Y-PCPPYKIIILDEADSMT------EDAQNAL 175 (382)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~--------~-~~~~~~vliiDe~d~l~------~~~~~~L 175 (382)
....++.+++........ +...+..+.......+..... . ..+++.+|+|||++.+. .+....|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l 164 (412)
T 1w5s_A 85 LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTL 164 (412)
T ss_dssp CCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHH
Confidence 123456666532222211 111111110000000000000 0 01256799999999974 3566667
Q ss_pred HHHHHhcC-----CceEEEEeecCcc---ccc---hhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHH
Q 016800 176 RRTMETYS-----KVTRFFFICNYIS---RII---EPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALST 241 (382)
Q Consensus 176 l~~le~~~-----~~~~~Il~~~~~~---~l~---~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ 241 (382)
++.+++.+ ..+.+|++++.+. .+. +.+.+++. .+.|+|++.+++.+++...+...+. .++++++..
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 77777654 5666787776543 233 45555543 4999999999999999887765432 478999999
Q ss_pred HHHhcC------CCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 242 LSSISQ------GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 242 l~~~s~------gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
+++.++ |+++.++.++..+...+ ...++.+++..+.
T Consensus 245 i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 245 ISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp HHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999999 99999999988765432 2457777766544
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=9.3e-15 Score=130.53 Aligned_cols=204 Identities=23% Similarity=0.235 Sum_probs=132.8
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcC-----------CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETA-----------NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.+.+|++++|.++++..+.+....- .. ++++|+||+|+||||++++++..+. ..++.+++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~~~~ 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSD 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC------CCEEEecHHH
Confidence 4568999999999887776655321 12 2399999999999999999999872 3455555432
Q ss_pred Cc--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHH---HHHHHHHHhcC--Cc
Q 016800 124 DR--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQ---NALRRTMETYS--KV 185 (382)
Q Consensus 124 ~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~---~~Ll~~le~~~--~~ 185 (382)
.. ........+....+..... ...++++||++.+. .... +.++..++... ..
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~----------~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKRH----------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTS----------CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHhc----------CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 10 0111122222222222111 34699999997652 1122 33444444322 23
Q ss_pred eEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHH
Q 016800 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQGA 260 (382)
Q Consensus 186 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~gdl-r~a~~~l~~~ 260 (382)
..++.+++.+..+.+.+.+ |+. .+.|++|+.++..++++..++ +..+++++ +..++..+.|+. +.+.+.++.+
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566677888889999988 554 799999999999999987664 34454443 778899998877 6666777766
Q ss_pred HHhc----CCCCChhhHhhhh
Q 016800 261 ARLF----GSSITSKDLISVS 277 (382)
Q Consensus 261 ~~~~----~~~It~~~v~~~~ 277 (382)
+..+ ...|+.+++.+++
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 6543 2468888887654
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-16 Score=161.33 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=137.6
Q ss_pred CcccCcHHHHHHHHHHHHcCC--------C-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLETAN--------C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--------~-~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
++++|++..++.+...+...+ + .+++|+||+|||||++|+++++.+.+.+ ..++.++++.........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhccchhHHH
Confidence 578999999998888876432 1 2499999999999999999999986542 466777776432211000
Q ss_pred HHH------------HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEE
Q 016800 132 TKI------------KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRF 188 (382)
Q Consensus 132 ~~l------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~ 188 (382)
..+ ..+... .. ...+.+|+|||++.++++.++.|+++|++.. .++.|
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~-~~---------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ii 704 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEA-VR---------RRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVI 704 (854)
T ss_dssp GC--------------CHHHH-HH---------HCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEE
T ss_pred HHcCCCCCCcCccccchHHHH-HH---------hCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEE
Confidence 000 000000 00 0145799999999999999999999999763 36778
Q ss_pred EEeecCc--------------------------cccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh---------CC
Q 016800 189 FFICNYI--------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GL 232 (382)
Q Consensus 189 Il~~~~~--------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~ 232 (382)
|++||.. ..+.+.|.+|+. ++.|.|++.+++..++...+... .+
T Consensus 705 I~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~ 784 (854)
T 1qvr_A 705 ILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISL 784 (854)
T ss_dssp EEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred EEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 9999862 235577889994 88999999999999988766531 24
Q ss_pred CCCHHHHHHHHHhcC---CCHHHHHHHHHHHHH
Q 016800 233 NLDAEALSTLSSISQ---GDLRRAITYLQGAAR 262 (382)
Q Consensus 233 ~~~~~~~~~l~~~s~---gdlr~a~~~l~~~~~ 262 (382)
.+++++++.|++.+. |+.|.+.+.++....
T Consensus 785 ~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 785 ELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp EECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred EECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 589999999999764 999999998887653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=147.31 Aligned_cols=224 Identities=19% Similarity=0.199 Sum_probs=150.1
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc----
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR---- 125 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~---- 125 (382)
....+|+|..|++++|++.+++.+...+..+. +++|+||+|+|||+++++++..+.+... ..+.+.+....
T Consensus 30 ~~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~---~~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 30 TEEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETL---EDILVFPNPEDENMP 104 (604)
T ss_dssp GGGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSC---EEEEEECCTTCTTSC
T ss_pred cCcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccC---CeEEEeCCcccccCC
Confidence 34568999999999999999999999998874 7999999999999999999998743321 11111111000
Q ss_pred --------chHHHHHHHHHHHHh---------------------------------------------hh-cCCCCCCCC
Q 016800 126 --------GINVVRTKIKTFAAV---------------------------------------------AV-GSGQRRGGY 151 (382)
Q Consensus 126 --------~~~~~~~~l~~~~~~---------------------------------------------~~-~~~~~~~~~ 151 (382)
....+.+........ .. ......++.
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 001111111110000 00 000000000
Q ss_pred -------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---------------------CCceEEEEeecCc--
Q 016800 152 -------------PCPPYKIIILDEADSMTEDAQNALRRTMETY---------------------SKVTRFFFICNYI-- 195 (382)
Q Consensus 152 -------------~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---------------------~~~~~~Il~~~~~-- 195 (382)
......+++|||++.+++..++.|++.|++. +..+++|+++|..
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence 0124459999999999999999999999843 2356789999875
Q ss_pred cccchhhhcccc----eEEecC---CCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHhc---CC-------CHHHH
Q 016800 196 SRIIEPLASRCA----KFRFKP---LSEEVMSSRVLHICNEEG-----LNLDAEALSTLSSIS---QG-------DLRRA 253 (382)
Q Consensus 196 ~~l~~~l~sr~~----~i~~~~---~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~s---~g-------dlr~a 253 (382)
..+.++|.+||. .+.|+. ...+.+..++..+++..+ ..++++++..|++.+ .| ++|.+
T Consensus 265 ~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 265 DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 578999999995 455543 355667777766655432 568999999998865 55 69999
Q ss_pred HHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 254 ITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 254 ~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
.++++.+...+ ...|+.++|.+++.
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 99998766544 35789999888774
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-14 Score=134.71 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=130.8
Q ss_pred CcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHh
Q 016800 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (382)
..++|++++++.+...+..+. |+||+||||||||++|+++++.+... ..+...++... ....+..........
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~----~~f~~~~~~~~-t~~dL~G~~~~~~~~ 94 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNA----RAFEYLMTRFS-TPEEVFGPLSIQALK 94 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSC----CEEEEECCTTC-CHHHHHCCBC-----
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhh----hHHHHHHHhcC-CHHHhcCcccHHHHh
Confidence 468899999999888887765 79999999999999999999987221 12233333221 111110000000000
Q ss_pred hhcCCCCCCCCCCC---CcEEEEEeCCCCCCHHHHHHHHHHHHhcC---------Cce-EEEEeecCccc---cchhhhc
Q 016800 141 AVGSGQRRGGYPCP---PYKIIILDEADSMTEDAQNALRRTMETYS---------KVT-RFFFICNYISR---IIEPLAS 204 (382)
Q Consensus 141 ~~~~~~~~~~~~~~---~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------~~~-~~Il~~~~~~~---l~~~l~s 204 (382)
..+ .......+ ...|++|||++.++++.++.|+..|++.. ... .+|++||.... ..+++.+
T Consensus 95 --~~g-~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld 171 (500)
T 3nbx_X 95 --DEG-RYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD 171 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT
T ss_pred --hch-hHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH
Confidence 000 00000011 23599999999999999999999998532 112 34777775322 4468999
Q ss_pred ccc-eEEecCCCH-HHHHHHHHHHH-----------------------HHhCCCCCHHHHHHHHHhc----------CCC
Q 016800 205 RCA-KFRFKPLSE-EVMSSRVLHIC-----------------------NEEGLNLDAEALSTLSSIS----------QGD 249 (382)
Q Consensus 205 r~~-~i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~l~~~s----------~gd 249 (382)
|+. .+.+++|+. ++...++.... ...++.+++++++++++.. +.+
T Consensus 172 RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS 251 (500)
T 3nbx_X 172 RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVS 251 (500)
T ss_dssp TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccc
Confidence 986 588888887 55666665432 1126678999998888766 568
Q ss_pred HHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 250 LRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 250 lr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
.|.++..+..+...+ ...++.++|. ++.
T Consensus 252 ~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 252 DRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGG
T ss_pred hhHHHHHHHHHHHHHhhcCCccccchHHH-HHH
Confidence 888777766544333 3578999888 443
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.1e-15 Score=136.05 Aligned_cols=190 Identities=21% Similarity=0.239 Sum_probs=124.4
Q ss_pred cccCcHHHHHHHHHHHH-------------cC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc
Q 016800 62 DVAHQEEVVRVLTNTLE-------------TA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-------------~~--~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (382)
.++|++.+++.+...+. .. ...+++|+||||||||++|+++++.+ +..++.+++.+...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADATTLTE 89 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechHHhcc
Confidence 46899999998888773 11 23359999999999999999999987 35567777653221
Q ss_pred hH----HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHhc------
Q 016800 127 IN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETY------ 182 (382)
Q Consensus 127 ~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~------ 182 (382)
.. .....+.......... +......+|+|||+|.++.. .++.|++.|+..
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~------~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~ 163 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKCDYD------VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 163 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHTTTC------HHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------
T ss_pred cccccccHHHHHHHHHHHhhhh------HHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccC
Confidence 11 1112222221111000 00013459999999988765 899999999921
Q ss_pred ---------------CCceEEEEeecCc----------cc-----------------------------------cchhh
Q 016800 183 ---------------SKVTRFFFICNYI----------SR-----------------------------------IIEPL 202 (382)
Q Consensus 183 ---------------~~~~~~Il~~~~~----------~~-----------------------------------l~~~l 202 (382)
..+..||++++.. .+ +.+.+
T Consensus 164 ~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l 243 (363)
T 3hws_A 164 QGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 243 (363)
T ss_dssp ----------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHH
T ss_pred ccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHH
Confidence 0233445554421 11 57888
Q ss_pred hcccc-eEEecCCCHHHHHHHHHH----HHH-------HhC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHh
Q 016800 203 ASRCA-KFRFKPLSEEVMSSRVLH----ICN-------EEG--LNLDAEALSTLSSIS---QGDLRRAITYLQGAARL 263 (382)
Q Consensus 203 ~sr~~-~i~~~~~~~~~~~~~l~~----~~~-------~~~--~~~~~~~~~~l~~~s---~gdlr~a~~~l~~~~~~ 263 (382)
.+|+. ++.|.|++.+++.+++.. +.+ ..+ +.+++++++.|++.+ .++.|.+.+.++.....
T Consensus 244 ~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~ 321 (363)
T 3hws_A 244 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLD 321 (363)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHH
T ss_pred hcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHH
Confidence 99998 556999999998888764 222 123 347999999998753 66778888888776643
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-14 Score=141.19 Aligned_cols=175 Identities=19% Similarity=0.203 Sum_probs=123.0
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.|...+.- + ..| ++|||||||||||++|+++++++ +..++.+++++.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l 274 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEI 274 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHH
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHh
Confidence 5889999999888888877632 1 223 39999999999999999999987 456777776542
Q ss_pred c--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhcC--CceEEE
Q 016800 125 R--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRFF 189 (382)
Q Consensus 125 ~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~~--~~~~~I 189 (382)
. ........+...+...... .+.||+|||+|.+.+ ...+.|+..|+... ..+.+|
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~----------~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI 344 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKN----------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTS----------CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE
T ss_pred hcccchHHHHHHHHHHHHHHHc----------CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEE
Confidence 1 1112222333333332221 567999999998842 34567888887643 356778
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd 249 (382)
.+||.++.+++++++ |+. .++++.|+.++..++|+..++..... ++-.+..++..+.|-
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~Gf 406 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGH 406 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSC
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCC
Confidence 889999999999998 776 79999999999999997665433221 222367788877553
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-13 Score=118.77 Aligned_cols=148 Identities=14% Similarity=0.201 Sum_probs=94.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 158 (382)
+||+||||||||++|+++++.+ +..++.+++++.. ....++..+........ . ..+.|
T Consensus 39 lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~-~---------~~~~v 102 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-K---------GNMCC 102 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT-T---------SSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh-c---------CCCeE
Confidence 8999999999999999999998 3556677654311 11122222222111101 1 15579
Q ss_pred EEEeCCCCCCH-------------HHHHHHHHHHHh-------------cCCceEEEEeecCccccchhhhc--ccceEE
Q 016800 159 IILDEADSMTE-------------DAQNALRRTMET-------------YSKVTRFFFICNYISRIIEPLAS--RCAKFR 210 (382)
Q Consensus 159 liiDe~d~l~~-------------~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~~l~~~l~s--r~~~i~ 210 (382)
|+|||+|.+.. ..++.|+..++. ...++.+|++||.++.+++++++ |+..+-
T Consensus 103 l~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i 182 (293)
T 3t15_A 103 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFY 182 (293)
T ss_dssp EEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEE
T ss_pred EEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeE
Confidence 99999998754 234788888862 22467899999999999999986 666433
Q ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HhcCCCHH
Q 016800 211 FKPLSEEVMSSRVLHICNEEGLNLDAEALSTLS-SISQGDLR 251 (382)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~s~gdlr 251 (382)
+ .|+.++..++++..+...+ ++.+.+..+. ..++.++.
T Consensus 183 ~-~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 183 W-APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp E-CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred e-CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 3 4699999999998887665 4555555444 44555654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=116.12 Aligned_cols=171 Identities=19% Similarity=0.197 Sum_probs=109.5
Q ss_pred CCCCcccCcHHHHHHHHHHHH----------c--CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE----------T--ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~----------~--~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+|+.|.+++++.+...+. . -..+ +++|+||||+|||+++++++..+ ...++.+++.+.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~------~~~~i~i~g~~l 80 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES------GLNFISVKGPEL 80 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEEETTTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc------CCCEEEEEcHHH
Confidence 578999999999988876542 1 1222 39999999999999999999986 234677776553
Q ss_pred cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHHHhcC--CceEEE
Q 016800 125 RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRFF 189 (382)
Q Consensus 125 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~~--~~~~~I 189 (382)
.. .......+.......... .+.++++||++.+.. ...+.++..|+... ....++
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~~----------~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKNS----------APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHT----------CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhc----------CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEE
Confidence 22 222233333333322111 346999999998632 12355666665432 345566
Q ss_pred EeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHh-CCCCC-HHHHHHHHH
Q 016800 190 FICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEE-GLNLD-AEALSTLSS 244 (382)
Q Consensus 190 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~l~~ 244 (382)
.++|.++.+++++.+ |+. .+.++.|+.++..++++..++.. ...++ +-.+..++.
T Consensus 151 a~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~ 210 (274)
T 2x8a_A 151 AATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAG 210 (274)
T ss_dssp EEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHT
T ss_pred eecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHH
Confidence 778999999999987 776 78999999999999998876542 22222 223556665
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-14 Score=111.74 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=91.3
Q ss_pred cccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
+++|+...++.+.+.++. ....+++|+||||||||++|+++++..... ...++ +++............+..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~---~~~~v-~~~~~~~~~~~~~~~~~~--- 74 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA---QGEFV-YRELTPDNAPQLNDFIAL--- 74 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT---TSCCE-EEECCTTTSSCHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc---CCCEE-EECCCCCcchhhhcHHHH---
Confidence 678988888888777653 233459999999999999999999875321 23455 776643222112221211
Q ss_pred hhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc-------ccchhhhcccc--eEE
Q 016800 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-------RIIEPLASRCA--KFR 210 (382)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~-------~l~~~l~sr~~--~i~ 210 (382)
. ...+++|||++.++.+.+..|+..++..+..+++|+++|... .+.+.+..|+. .+.
T Consensus 75 -a-------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~ 140 (145)
T 3n70_A 75 -A-------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIA 140 (145)
T ss_dssp -H-------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEE
T ss_pred -c-------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEe
Confidence 1 234899999999999999999999988888888999998642 34566666655 566
Q ss_pred ecCC
Q 016800 211 FKPL 214 (382)
Q Consensus 211 ~~~~ 214 (382)
++|+
T Consensus 141 lPpL 144 (145)
T 3n70_A 141 CLPL 144 (145)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6665
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=125.97 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred cEEEEEeCCCCCCH------------HHHHHHHHHHHhc----------CCceEEEEee----cCccccchhhhcccce-
Q 016800 156 YKIIILDEADSMTE------------DAQNALRRTMETY----------SKVTRFFFIC----NYISRIIEPLASRCAK- 208 (382)
Q Consensus 156 ~~vliiDe~d~l~~------------~~~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sr~~~- 208 (382)
..++++||+|++.. ..|++|++.+|.. ..++.||+++ +++..+.+.+++|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 45899999998853 2678999999952 3456677776 2445577999999995
Q ss_pred EEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHhc---
Q 016800 209 FRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS--------QGDLRRAITYLQGAARLF--- 264 (382)
Q Consensus 209 i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s--------~gdlr~a~~~l~~~~~~~--- 264 (382)
+.|++++.+++..++.. .+..+++ .++++++..|++.+ .+..|.+.+.++++....
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~ 410 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 410 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhh
Confidence 89999999999999841 1222344 58999999999852 466777777777665331
Q ss_pred --C-----CCCChhhHhhhhCC
Q 016800 265 --G-----SSITSKDLISVSGV 279 (382)
Q Consensus 265 --~-----~~It~~~v~~~~~~ 279 (382)
+ -.||.+.|...++.
T Consensus 411 ~~~~~~~~~~i~~~~v~~~l~~ 432 (444)
T 1g41_A 411 ASDMNGQTVNIDAAYVADALGE 432 (444)
T ss_dssp GGGCTTCEEEECHHHHHHHHTT
T ss_pred ccccCCCeEEEeHHHHHHhcCc
Confidence 1 12566666655543
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-12 Score=116.21 Aligned_cols=189 Identities=14% Similarity=0.149 Sum_probs=121.9
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc------chHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRT 132 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (382)
.-..++|+++.++.|..++..+ +.++++||+|+|||++++.+++.. . ++.+++.... ....+..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHHHHHH
Confidence 4467899999999999999875 579999999999999999999875 1 3444432210 1111111
Q ss_pred HHHHHHHh---------------hhcCCCCCCCC-----------CCCCcEEEEEeCCCCCCH-------HHHHHHHHHH
Q 016800 133 KIKTFAAV---------------AVGSGQRRGGY-----------PCPPYKIIILDEADSMTE-------DAQNALRRTM 179 (382)
Q Consensus 133 ~l~~~~~~---------------~~~~~~~~~~~-----------~~~~~~vliiDe~d~l~~-------~~~~~Ll~~l 179 (382)
.+...... ........... ...++.+|+|||++.+.. +....|...+
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 11100000 00000000000 000357999999999753 4455666666
Q ss_pred HhcCCceEEEEeecCcc---c------cchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 016800 180 ETYSKVTRFFFICNYIS---R------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (382)
Q Consensus 180 e~~~~~~~~Il~~~~~~---~------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gd 249 (382)
+.. .++.+|+++.... . ...++..|. ..+.+.|++.++..+++...+...|..++++.+..++..++|+
T Consensus 160 ~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 160 DSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred Hhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 654 4677888775432 1 122344444 4899999999999999988887778888999999999999999
Q ss_pred HHHHHHHHH
Q 016800 250 LRRAITYLQ 258 (382)
Q Consensus 250 lr~a~~~l~ 258 (382)
|..+.....
T Consensus 239 P~~l~~~~~ 247 (350)
T 2qen_A 239 PGWLVVFGV 247 (350)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 986554443
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=138.08 Aligned_cols=179 Identities=21% Similarity=0.229 Sum_probs=110.3
Q ss_pred CCCCcccCcHHHHHHHHHHHHc-----------C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLET-----------A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
.+|+++.|.+++++.|...+.. + ..+ .+|||||||||||.+|+++|.++ +.+++.++.++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l 547 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPEL 547 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchh
Confidence 4788999999999998876632 1 122 39999999999999999999997 455666654321
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHhcC-
Q 016800 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETYS- 183 (382)
Q Consensus 125 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~~- 183 (382)
.+...++..+.... .. .+.||+|||+|.+... ..+.|+..|+...
T Consensus 548 ~s~~vGese~~vr~lF~~Ar----~~----------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKAR----QA----------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHH----TT----------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred hccccchHHHHHHHHHHHHH----Hc----------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 12233444333321 11 4579999999988421 3577888888543
Q ss_pred -CceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----cCCCHHHHHH
Q 016800 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----SQGDLRRAIT 255 (382)
Q Consensus 184 -~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----s~gdlr~a~~ 255 (382)
..+.+|.+||.++.+++++.+ |+. .+.|+.|+.++..++++..+++.... ++-.++.|++. ||.|+..+.+
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHH
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 455667788999999999998 887 89999999999999887665443322 12235566654 4667776655
Q ss_pred HH
Q 016800 256 YL 257 (382)
Q Consensus 256 ~l 257 (382)
..
T Consensus 693 ~A 694 (806)
T 3cf2_A 693 RA 694 (806)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-14 Score=137.90 Aligned_cols=209 Identities=18% Similarity=0.108 Sum_probs=124.6
Q ss_pred CCcccCcHHHHHHHHHHHHcCCC-----------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 60 VKDVAHQEEVVRVLTNTLETANC-----------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~-----------~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
...++|++.+++.+...+..+.. .|+||+||||||||++|+++++.+........ ...++.+..+.
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~--~~~~~~~l~~~- 370 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG--KGSTAAGLTAA- 370 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT--TCSTTTTSEEE-
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC--Cccccccccce-
Confidence 35788999999888766666531 16999999999999999999987621110000 00011110000
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-------------CceEEEEeecCc
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYI 195 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~ 195 (382)
...... . ... ....+....+...+++|||++.++++.++.|+..||+.. ..+.+|.++|+.
T Consensus 371 ~~~~~~---~-g~~--~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 371 VVREKG---T-GEY--YLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp CSSGGG---T-SSC--SEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eeeccc---c-ccc--cccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 000000 0 000 000000000134599999999999999999999999642 356688888876
Q ss_pred c-------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHh-------------------------CCCCCH
Q 016800 196 S-------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE-------------------------GLNLDA 236 (382)
Q Consensus 196 ~-------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~ 236 (382)
. .+.+++.+|+. .+.+.+++..+...+...+.... ...+++
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ 524 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITS 524 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCC
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCH
Confidence 5 78899999995 55555555544444444333321 224566
Q ss_pred HHHHHHHHh---------------cCCCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 237 EALSTLSSI---------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 237 ~~~~~l~~~---------------s~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
++.+.|.+. .++++|.+.+++..+...+ ...|+.++|.+++
T Consensus 525 ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 525 EAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp CTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 666666654 4677777777766544333 4567877776654
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=109.65 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=87.0
Q ss_pred cccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
+++|++..++.+.+.+.. ....+++|+||||||||++|+++++... .++.+++.... ....... ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~~-~~~~~~~----~~ 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEYL-IDMPMEL----LQ 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTHH-HHCHHHH----HH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhCC-hHhhhhH----HH
Confidence 678998888887777654 3334699999999999999999987651 56777776531 1111111 11
Q ss_pred hhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCceEEEEeecCc-cc----cchhhhcccc--eEEe
Q 016800 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-SR----IIEPLASRCA--KFRF 211 (382)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~----l~~~l~sr~~--~i~~ 211 (382)
.. ...+++|||++.++.+.+..|++.+++. +..+++|+++|.. .. +.+.+..|+. .+.+
T Consensus 73 ~a-------------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~l 139 (143)
T 3co5_A 73 KA-------------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRI 139 (143)
T ss_dssp HT-------------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEE
T ss_pred hC-------------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeC
Confidence 11 3359999999999999999999999986 3567888888754 22 3455666655 4666
Q ss_pred cCC
Q 016800 212 KPL 214 (382)
Q Consensus 212 ~~~ 214 (382)
+|+
T Consensus 140 PpL 142 (143)
T 3co5_A 140 PPL 142 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-12 Score=117.09 Aligned_cols=199 Identities=19% Similarity=0.182 Sum_probs=130.3
Q ss_pred CcccCcHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
.+++|+...+..+...+.. .....++++|++|+||+.+|+++....... ..++.+||..... ..+...+-...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~----~~fv~vnc~~~~~-~~~~~~lfg~~ 203 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK----GAFVDLNCASIPQ-ELAESELFGHE 203 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC----SCEEEEESSSSCT-TTHHHHHHEEC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc----CCcEEEEcccCCh-HHHHHHhcCcc
Confidence 4677887666655554432 222349999999999999999998875322 2388899986422 22222111000
Q ss_pred HhhhcCCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------cc
Q 016800 139 AVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RI 198 (382)
Q Consensus 139 ~~~~~~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l 198 (382)
.....+.. ..+.+......++++||++.|+.+.|..|++.+++.. ..+++|.+||..- ..
T Consensus 204 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 204 KGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp SCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 00000000 0001111244589999999999999999999999642 2567888887532 24
Q ss_pred chhhhcccc--eEEecCCCH--HHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Q 016800 199 IEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (382)
Q Consensus 199 ~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~---~~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~ 264 (382)
.+.+..|+. .+.++|+.+ +++..++...+ ...+ ..+++++++.+..+. .||+|.+.+.++.++..+
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 456777877 467888876 67666555443 3334 348999999999987 999999999999888765
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=115.31 Aligned_cols=211 Identities=18% Similarity=0.205 Sum_probs=136.7
Q ss_pred CCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHH
Q 016800 60 VKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (382)
+..++|....++.+.+.+..-. ..+++++|++||||+++|+.+...... ....++.+|+... ....+...+-..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r---~~~~fv~v~~~~~-~~~~~~~elfg~ 211 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR---SKEPFVALNVASI-PRDIFEAELFGY 211 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT---TTSCEEEEETTTS-CHHHHHHHHHCB
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC---CCCCeEEEecCCC-CHHHHHHHhcCC
Confidence 4568888777766666554322 223899999999999999999886422 2356888998864 222222211110
Q ss_pred HHhhhcCC--CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------c
Q 016800 138 AAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (382)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~ 197 (382)
......+. ...+.+......++++||++.++.+.|..|++.+++.. ..+++|.+||... .
T Consensus 212 ~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 212 EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 00000000 00111112245699999999999999999999999732 3567888887632 2
Q ss_pred cchhhhcccc--eEEecCCCH--HHHHHHHHHH----HHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-
Q 016800 198 IIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (382)
Q Consensus 198 l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~- 264 (382)
..+.+..|.. .+.++|+.. +++..++... +.+.+. .++++++..+..+. .||+|.+.+.++.++..+
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 4455555665 566777654 6666555443 334443 37899999998776 899999999999988766
Q ss_pred CCCCChhhHh
Q 016800 265 GSSITSKDLI 274 (382)
Q Consensus 265 ~~~It~~~v~ 274 (382)
+..|+.+++.
T Consensus 372 ~~~i~~~~l~ 381 (387)
T 1ny5_A 372 GKFIDRGELS 381 (387)
T ss_dssp SSEECHHHHH
T ss_pred CCcCcHHHCc
Confidence 4567766653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=107.94 Aligned_cols=134 Identities=14% Similarity=0.225 Sum_probs=81.8
Q ss_pred hhcCCCCCCcccC----cHHHHHHHHHHHHcCC---CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 53 EKYRPKQVKDVAH----QEEVVRVLTNTLETAN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 53 ~k~~p~~~~~~~g----~~~~~~~l~~~l~~~~---~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
++|++.+|+++++ +.+++..+..++.+-. ...++|+||+|+||||++++++..+.... ...+..++..+
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~--g~~~~~~~~~~-- 77 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK--GIRGYFFDTKD-- 77 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS--CCCCCEEEHHH--
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc--CCeEEEEEHHH--
Confidence 6899999999986 4566677777776543 23499999999999999999999874111 11222233221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCC--CCCHHHHHHHHHHHHhcC-CceEEEEeecCccc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYS-KVTRFFFICNYISR 197 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d--~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~ 197 (382)
+...+.......... ..... ..+..++||||++ .+++...+.|..+++... ....+|++||....
T Consensus 78 ----~~~~~~~~~~~~~~~-~~~~~--~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 78 ----LIFRLKHLMDEGKDT-KFLKT--VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp ----HHHHHHHHHHHTCCS-HHHHH--HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred ----HHHHHHHHhcCchHH-HHHHH--hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 111111110000000 00000 0045699999998 567778888888887653 45668888876543
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-11 Score=108.61 Aligned_cols=189 Identities=17% Similarity=0.154 Sum_probs=117.9
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-----cchHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RGINVVRTK 133 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 133 (382)
..+.++|+++.++.|.. +.. +.++++||+|+|||++++.+++.+. ..++.+++... .........
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN------LPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT------CCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC------CCEEEEEchhhccccCCCHHHHHHH
Confidence 34678999999999988 765 5799999999999999999998862 12344554321 111111111
Q ss_pred HHHHHHh-------------hh-----cC-CCC-------CCCC--------CCC-CcEEEEEeCCCCCCH----HHHHH
Q 016800 134 IKTFAAV-------------AV-----GS-GQR-------RGGY--------PCP-PYKIIILDEADSMTE----DAQNA 174 (382)
Q Consensus 134 l~~~~~~-------------~~-----~~-~~~-------~~~~--------~~~-~~~vliiDe~d~l~~----~~~~~ 174 (382)
+...... .. .. ... .... ... ++.+|+|||++.+.. +....
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 1111100 00 00 000 0000 000 366999999999753 33445
Q ss_pred HHHHHHhcCCceEEEEeecCccc---------cchhhhccc-ceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 016800 175 LRRTMETYSKVTRFFFICNYISR---------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (382)
Q Consensus 175 Ll~~le~~~~~~~~Il~~~~~~~---------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 244 (382)
|..+++.. .+..+|+++..... ...++..|. ..+.+.|++.++..+++...+...+...++. ..++.
T Consensus 161 l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYE 237 (357)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHH
T ss_pred HHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHH
Confidence 55555553 35678888765321 112344454 5899999999999999998877667665543 88899
Q ss_pred hcCCCHHHHHHHHHHH
Q 016800 245 ISQGDLRRAITYLQGA 260 (382)
Q Consensus 245 ~s~gdlr~a~~~l~~~ 260 (382)
.++|++..+......+
T Consensus 238 ~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHCSCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999999766555443
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-11 Score=103.62 Aligned_cols=134 Identities=19% Similarity=0.223 Sum_probs=87.1
Q ss_pred HHHHHHHHcC-C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCC
Q 016800 71 RVLTNTLETA-N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (382)
Q Consensus 71 ~~l~~~l~~~-~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 148 (382)
..+..|++.. . ..+++|+||||||||.++.++++.+. ....++..+. .+.....
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~-------l~G~vn~~~~-----------~f~l~~~------ 146 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP-------FYGCVNWTNE-----------NFPFNDC------ 146 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS-------CEEECCTTCS-----------SCTTGGG------
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc-------ccceeecccc-----------ccccccc------
Confidence 4456666654 2 22499999999999999999999741 1111222111 0100000
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH--------hcC-----CceEEEEeecCc-----------cccchhhhc
Q 016800 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTME--------TYS-----KVTRFFFICNYI-----------SRIIEPLAS 204 (382)
Q Consensus 149 ~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le--------~~~-----~~~~~Il~~~~~-----------~~l~~~l~s 204 (382)
...++++.||+ .+..++.+.+..+++ ... ..+.+|++||.. ....+.|+|
T Consensus 147 -----~~k~i~l~Ee~-~~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s 220 (267)
T 1u0j_A 147 -----VDKMVIWWEEG-KMTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD 220 (267)
T ss_dssp -----SSCSEEEECSC-CEETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT
T ss_pred -----cccEEEEeccc-cchhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh
Confidence 13456665555 455567778888887 322 566789999861 245688999
Q ss_pred ccceEEec--------CCCHHHHHHHHHHHHHHhCCCCC
Q 016800 205 RCAKFRFK--------PLSEEVMSSRVLHICNEEGLNLD 235 (382)
Q Consensus 205 r~~~i~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 235 (382)
|+..++|. +++.+++..++... +.+..+++
T Consensus 221 R~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 221 RMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp TEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred hEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 99999999 89999999999854 66666544
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.5e-10 Score=110.49 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=83.4
Q ss_pred cCCchhhhhcCCCCCCccc-CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 46 QSSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~-g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
....||.+||+|++|+++- +|.+++..+..++..+.. +++|.|++|||||+++..+++.+...+. ..++.+ +...
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~-a~T~ 84 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE--TGIILA-APTH 84 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEE-ESSH
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEe-cCcH
Confidence 4678999999999999987 688888888888887653 7999999999999999999998854432 122222 2222
Q ss_pred cchHHHHHHH-------HHHHHhhhcCCC------CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 016800 125 RGINVVRTKI-------KTFAAVAVGSGQ------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 125 ~~~~~~~~~l-------~~~~~~~~~~~~------~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
.....+++.+ ..+......... ........+++++||||++.++......|++.+. ....++++
T Consensus 85 ~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~v 161 (459)
T 3upu_A 85 AAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGI 161 (459)
T ss_dssp HHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEE
T ss_pred HHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEE
Confidence 2222232221 111110000000 0001112357899999999999988888887764 45678888
Q ss_pred ecCcc
Q 016800 192 CNYIS 196 (382)
Q Consensus 192 ~~~~~ 196 (382)
++...
T Consensus 162 GD~~Q 166 (459)
T 3upu_A 162 GDNKQ 166 (459)
T ss_dssp ECTTS
T ss_pred CCHHH
Confidence 86543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=97.69 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=75.2
Q ss_pred hhhhcCCCCCCcccCcH----HHHHHHHHHHHcCCC----CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 51 WVEKYRPKQVKDVAHQE----EVVRVLTNTLETANC----PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~----~~~~~l~~~l~~~~~----~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+.++|++.+|+++++.. .+++.+..++..... .+++|+||+|+|||++++++++.+...+ ..+..+++.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~~~~ 91 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIVYVP 91 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEEEHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEhH
Confidence 44677888999999743 355666777765521 4699999999999999999999885332 334444443
Q ss_pred CCcchHHHH---------HHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHHH-HHHHhc-CCceEEE
Q 016800 123 DDRGINVVR---------TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALR-RTMETY-SKVTRFF 189 (382)
Q Consensus 123 ~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~Ll-~~le~~-~~~~~~I 189 (382)
+. ...+. ..+..+. ...+|+|||++..... .+..++ .+++.. .....+|
T Consensus 92 ~~--~~~~~~~~~~~~~~~~~~~~~----------------~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i 153 (202)
T 2w58_A 92 EL--FRELKHSLQDQTMNEKLDYIK----------------KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTF 153 (202)
T ss_dssp HH--HHHHHHC---CCCHHHHHHHH----------------HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEE
T ss_pred HH--HHHHHHHhccchHHHHHHHhc----------------CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 11 01110 0111111 2349999999775433 244344 466543 3455688
Q ss_pred EeecCc
Q 016800 190 FICNYI 195 (382)
Q Consensus 190 l~~~~~ 195 (382)
++||..
T Consensus 154 ~tsn~~ 159 (202)
T 2w58_A 154 FTSNFD 159 (202)
T ss_dssp EEESSC
T ss_pred EEcCCC
Confidence 888754
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=91.65 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCC
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (382)
+...+..+..+ ....++|+||+|+|||+++++++..+... ...++.++..+.... .+ ..
T Consensus 24 n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---g~~~~~~~~~~~~~~--------~~-----~~- 82 (149)
T 2kjq_A 24 NAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEA---GKNAAYIDAASMPLT--------DA-----AF- 82 (149)
T ss_dssp THHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTT---TCCEEEEETTTSCCC--------GG-----GG-
T ss_pred cHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEcHHHhhHH--------HH-----Hh-
Confidence 34444444433 33359999999999999999999987432 234566666543322 00 00
Q ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC--ceEEEEeecCc-ccc--chhhhcccc
Q 016800 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK--VTRFFFICNYI-SRI--IEPLASRCA 207 (382)
Q Consensus 146 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~-~~l--~~~l~sr~~ 207 (382)
+..+++|||++.+....++.|+.+++.... .+++|++++.+ ..+ .+.++||+.
T Consensus 83 ---------~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 83 ---------EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp ---------GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred ---------CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 456999999999987778888888876432 23377777743 222 289999986
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.6e-10 Score=94.58 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 68 EVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
..+..+..+++.-... +++|+||||||||++|.++++.+.+ .++.+...... +.....
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g------~i~~fans~s~-----------f~l~~l---- 101 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTSH-----------FWLEPL---- 101 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSSC-----------GGGGGG----
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC------CeeeEEeccch-----------hhhccc----
Confidence 3456677777642212 4999999999999999999998732 12211111000 000000
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHHHhcC-------------CceEEEEeecCc---cccchhhhcccceE
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAKF 209 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i 209 (382)
.+.+++++||++.-.... ...++.+++..+ ....+|+|||.. +...+.|.||+..+
T Consensus 102 -------~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f 174 (212)
T 1tue_A 102 -------TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVF 174 (212)
T ss_dssp -------TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEE
T ss_pred -------CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEE
Confidence 145799999998432222 345666666542 134689999873 44568899999988
Q ss_pred EecC-------------CCHHHHHHHHHHHHHH
Q 016800 210 RFKP-------------LSEEVMSSRVLHICNE 229 (382)
Q Consensus 210 ~~~~-------------~~~~~~~~~l~~~~~~ 229 (382)
.|+. ++.+..+.+.++...+
T Consensus 175 ~F~~~~p~~~~g~p~~~~~~~~wk~ff~~~~~~ 207 (212)
T 1tue_A 175 EFPNAFPFDKNGNPVYEINDKNWKCFFERTWSR 207 (212)
T ss_dssp ECCSCCCBCTTSCBSCCCCHHHHHHHHHHHTGG
T ss_pred EcCCCCCCCCCCCeeEEeCcchHHHHHHHHHHh
Confidence 8873 2345666666554443
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-09 Score=96.67 Aligned_cols=170 Identities=16% Similarity=0.107 Sum_probs=104.1
Q ss_pred ccCcHHHHHHHHHHHHcCC-----CCcEEEeCCCCCCHHHHHHHH-HHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 63 VAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAI-AHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~-----~~~lll~Gp~G~GKt~la~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
++||+.++..+.-.+..|. -.|+||.|+||+ ||.+++++ ++.+ .. ......... ....+ ...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-pR------~~ft~g~~s-s~~gL---t~s 282 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-PR------GVYVDLRRT-ELTDL---TAV 282 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-SS------EEEEEGGGC-CHHHH---SEE
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-CC------eEEecCCCC-CccCc---eEE
Confidence 7899999888887776653 127999999999 99999999 6543 11 111111000 00000 000
Q ss_pred HHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc---------CCceEEEEeecCcc-----------
Q 016800 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---------SKVTRFFFICNYIS----------- 196 (382)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---------~~~~~~Il~~~~~~----------- 196 (382)
.....+.....+.+..+...++++||++.++++.+.+|++.||+. +..+.+|.++|+..
T Consensus 283 -~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~ 361 (506)
T 3f8t_A 283 -LKEDRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARI 361 (506)
T ss_dssp -EEESSSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGC
T ss_pred -EEcCCCcccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCcccc
Confidence 000000000001111124569999999999999999999999964 45677888888753
Q ss_pred ccchhhhcccceEEe---------------cCCCHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHh
Q 016800 197 RIIEPLASRCAKFRF---------------KPLSEEVMSSRVLHIC-NEEGLNLDAEALSTLSSI 245 (382)
Q Consensus 197 ~l~~~l~sr~~~i~~---------------~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~ 245 (382)
.+.+++.+|+..+.. +.++.+++++++...- ..-.+.+++++.++|++.
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred CCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 688899999964321 2345566666665432 122566888887777653
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.5e-10 Score=102.01 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=72.6
Q ss_pred hhhcCCCCCCcccCc----HHHHHHHHHHHHcCC---CCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceEEeecCC
Q 016800 52 VEKYRPKQVKDVAHQ----EEVVRVLTNTLETAN---CPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASD 123 (382)
Q Consensus 52 ~~k~~p~~~~~~~g~----~~~~~~l~~~l~~~~---~~~lll~Gp~G~GKt~la~~la~~l~-~~~~~~~~~~~~~~~~ 123 (382)
...+++.+|+++++. ..+...+..++.... ..+++|+||+|+|||+++.++++.+. ..+ ..+..++.++
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~~~~~ 191 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLLHFPS 191 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEEEHHH
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEEEHHH
Confidence 356678899999863 335556667777532 34699999999999999999999875 332 3344444321
Q ss_pred CcchHHHHHHHHHHHHhhhcCCCCCCCCC--CCCcEEEEEeCCCCCCH--HHHHHHH-HHHHhc-CCceEEEEeecCc
Q 016800 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYP--CPPYKIIILDEADSMTE--DAQNALR-RTMETY-SKVTRFFFICNYI 195 (382)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vliiDe~d~l~~--~~~~~Ll-~~le~~-~~~~~~Il~~~~~ 195 (382)
+ +..+... ...+. ..... ..+..+|||||++.... ..++.|+ .+++.. .....+|++||.+
T Consensus 192 ------l---~~~l~~~-~~~~~-~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 192 ------F---AIDVKNA-ISNGS-VKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp ------H---HHHHHCC-CC-----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred ------H---HHHHHHH-hccch-HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 1 1111000 00000 00000 01346999999976543 3344344 466654 2345688888753
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-09 Score=115.35 Aligned_cols=151 Identities=17% Similarity=0.148 Sum_probs=100.0
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhc-CCCCCCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-SGQRRGG 150 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~ 150 (382)
.+..++..++ ++||+||||||||++|+.+.... .+..+..++.+.......+...+......... .+...+.
T Consensus 1259 ll~~~l~~~~--~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P 1331 (2695)
T 4akg_A 1259 IFYDLLNSKR--GIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP 1331 (2695)
T ss_dssp HHHHHHHHTC--EEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE
T ss_pred HHHHHHHCCC--eEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC
Confidence 3455555554 69999999999999997776653 13455667766554555555544443211100 0000001
Q ss_pred CCCCCcEEEEEeCCCCCCH------HHHHHHHHHHHhcC------------CceEEEEeecCc-----cccchhhhcccc
Q 016800 151 YPCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASRCA 207 (382)
Q Consensus 151 ~~~~~~~vliiDe~d~l~~------~~~~~Ll~~le~~~------------~~~~~Il~~~~~-----~~l~~~l~sr~~ 207 (382)
...+++-|++|||++.... ...+.|+..+|... .++.+|.++|++ ..+.+++.+|+.
T Consensus 1332 ~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1332 KSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp BSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred CCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Confidence 1123567999999776432 46778888887421 235678888887 368999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHH
Q 016800 208 KFRFKPLSEEVMSSRVLHICNE 229 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~ 229 (382)
++.++.|+.+++..++..+...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887754
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-07 Score=90.23 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=104.4
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceEEeecCCCcchHHHHH
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~Gp~G~GKt~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
-|.....++|++..+..+..++... ....+.|+||+|+|||++|..+++.... ...+...+..++.... ....+..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3666678999999999999999743 2233899999999999999998743200 0001112333332221 1111111
Q ss_pred HHHHHHHhhhc-C---CCCCCCC------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 133 KIKTFAAVAVG-S---GQRRGGY------------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 133 ~l~~~~~~~~~-~---~~~~~~~------------~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
.+..+...... . ....... ...++-+||+|+++.. . .++..+..+.+|+||....
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCCcH
Confidence 12211111000 0 0000000 0013569999999752 1 2334456777888876543
Q ss_pred ccchhhhcccceEEe---cCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 016800 197 RIIEPLASRCAKFRF---KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (382)
Q Consensus 197 ~l~~~l~sr~~~i~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l 257 (382)
.. .... ...+.+ .+++.++..+++...+... ..-.++.+..|++.++|.|-.+....
T Consensus 269 ~~-~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a 328 (591)
T 1z6t_A 269 VT-DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIG 328 (591)
T ss_dssp GG-TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHH
T ss_pred HH-HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHH
Confidence 21 1111 233444 4899999999998766421 11124578899999999987654443
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-06 Score=98.03 Aligned_cols=169 Identities=22% Similarity=0.255 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCC
Q 016800 68 EVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 147 (382)
+....+..++..+. ..++.||+|||||++++.+|+.+ +..++.+++.+......+...+......
T Consensus 633 r~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~~~lg~~~~g~~~~------- 697 (2695)
T 4akg_A 633 IGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDYQVLSRLLVGITQI------- 697 (2695)
T ss_dssp HHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCChhHhhHHHHHHHhc-------
Confidence 34455555555543 47899999999999999999998 4667889998877766665555444322
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHH-------HHHHhc-------------CCceEEEEeecC----ccccchhhh
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALR-------RTMETY-------------SKVTRFFFICNY----ISRIIEPLA 203 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll-------~~le~~-------------~~~~~~Il~~~~----~~~l~~~l~ 203 (382)
...+++||+++++++....+- ..+.+. ++.+.+++|.|+ ...+++.++
T Consensus 698 --------Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk 769 (2695)
T 4akg_A 698 --------GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLK 769 (2695)
T ss_dssp --------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHH
T ss_pred --------CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHH
Confidence 248999999999998776663 333222 234556666673 346899999
Q ss_pred cccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------c-----CCCHHHHHHHHHHHHH
Q 016800 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------S-----QGDLRRAITYLQGAAR 262 (382)
Q Consensus 204 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s-----~gdlr~a~~~l~~~~~ 262 (382)
+||..+.+..|+.+.+.+++.. ..|....+..+..++.. + +-.+|.+...|..+..
T Consensus 770 ~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 770 KSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp TTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred hheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 9999999999999998888643 34554444444433321 1 2357887777765543
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-07 Score=103.25 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=98.8
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcC--CCCCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRG 149 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~ 149 (382)
.+..++..++ ++||+||+|||||.++..+.+.+. +..++.++.+.......+...+.......... +...+
T Consensus 1296 ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l~-----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~ 1368 (3245)
T 3vkg_A 1296 VLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAFP-----DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLR 1368 (3245)
T ss_dssp HHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGCT-----TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEE
T ss_pred HHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhCC-----CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccC
Confidence 4455555554 599999999999998876665541 23456777776555555555554322111110 10011
Q ss_pred CCCCCCcEEEEEeCCCCCCH------HHHHHHHHHHHhcC------------CceEEEEeecCc-----cccchhhhccc
Q 016800 150 GYPCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASRC 206 (382)
Q Consensus 150 ~~~~~~~~vliiDe~d~l~~------~~~~~Ll~~le~~~------------~~~~~Il~~~~~-----~~l~~~l~sr~ 206 (382)
....+++-|++|||++.-.. ...+.|+.+++... ..+.||.++|++ ..+.+.+.+|+
T Consensus 1369 p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1369 PTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp ESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred CCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 11123667999999986543 46788888888421 345677777876 34889999999
Q ss_pred ceEEecCCCHHHHHHHHHHHHH
Q 016800 207 AKFRFKPLSEEVMSSRVLHICN 228 (382)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~ 228 (382)
.++.++.|+.+++..+...+..
T Consensus 1449 ~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 PILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp CEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999999776554
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-06 Score=84.96 Aligned_cols=180 Identities=12% Similarity=0.092 Sum_probs=101.1
Q ss_pred cCcHHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHH---HhcCCCCCCCceEEeecCCCc--chH-HHHHHH
Q 016800 64 AHQEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAH---QLFGPELYKSRVLELNASDDR--GIN-VVRTKI 134 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~~---~~~~lll~Gp~G~GKt~la~~la~---~l~~~~~~~~~~~~~~~~~~~--~~~-~~~~~l 134 (382)
+|++..+..+.+++..+ ....+.|+|+.|+|||++|+.+++ .-....+ ...+.++.+... ... .....+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY--DSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB--SEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC--CcEEEEEECCCCCCCHHHHHHHHH
Confidence 49999999999998655 233389999999999999999997 2222222 123334443321 122 222222
Q ss_pred HHHHHhhh-cCCCCCCC------------CCCCC-cEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 135 KTFAAVAV-GSGQRRGG------------YPCPP-YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 135 ~~~~~~~~-~~~~~~~~------------~~~~~-~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
..+..... ........ .-.++ +-+||+|+++.... . .+ ... ..+++|+||.... +..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-~~----~~~-~gs~ilvTTR~~~-v~~ 279 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-RW----AQE-LRLRCLVTTRDVE-ISN 279 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-HH----HHH-TTCEEEEEESBGG-GGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-cc----ccc-CCCEEEEEcCCHH-HHH
Confidence 22221100 00000000 00233 78999999988421 1 11 111 4567777776532 222
Q ss_pred hhhcccceEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCHHHHH
Q 016800 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGL-NLDAEALSTLSSISQGDLRRAI 254 (382)
Q Consensus 201 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~s~gdlr~a~ 254 (382)
........+.+++++.++..+++.+.+..... .-..+....|++.++|.|-.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 22112246899999999999998766422111 1113467889999999886543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.46 E-value=9e-07 Score=72.82 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=48.9
Q ss_pred CcEEEEEeCCC---CCCHHHHHHHHHHHHhcCCceEEEEeec--Cccccchhhhcc--cceEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEAD---SMTEDAQNALRRTMETYSKVTRFFFICN--YISRIIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d---~l~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 224 (382)
+++++++||++ .+.+...+.+.+.+++. .+.+|+++. +...+...+.+| +.++.+.+.+.+++...+.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 56799999953 45678889999999873 333555553 445567788888 6789998888776666553
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=9.5e-06 Score=86.77 Aligned_cols=187 Identities=11% Similarity=0.083 Sum_probs=107.5
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHh--cCCCCCCCceEEeecCCCcchHHHH
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVVR 131 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~Gp~G~GKt~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
-|.....++|+++.++.+.+.+.... ...+.|+|+.|+|||++|..+++.. .... ....++.++...... ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC-FSGGVHWVSIGKQDK-SGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTT-STTCEEEEECCSCCH-HHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhh-CCCeEEEEEECCcCc-hHHH
Confidence 45666789999999999999986432 2238899999999999998887652 1111 122333444333211 1111
Q ss_pred HHHHHHHHhhhcCCC----CCCC-----------C-CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 132 TKIKTFAAVAVGSGQ----RRGG-----------Y-PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 132 ~~l~~~~~~~~~~~~----~~~~-----------~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
..+..+......... .... . ...++-+||+|+++.. . .++...+.+++|+||...
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCCH
Confidence 112111111000000 0000 0 0023679999999853 1 233345667888888754
Q ss_pred cccchhhhcccceEEecC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 016800 196 SRIIEPLASRCAKFRFKP-LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (382)
Q Consensus 196 ~~l~~~l~sr~~~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~ 255 (382)
.- ..........+.+.+ ++.++..+++...+...... .++....|++.++|.|-.+..
T Consensus 268 ~~-~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~ 326 (1249)
T 3sfz_A 268 SV-TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSL 326 (1249)
T ss_dssp TT-TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHH
T ss_pred HH-HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHH
Confidence 32 212222334678886 99999999998766332222 235678899999998765443
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-07 Score=76.39 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=41.8
Q ss_pred CcEEEEEeCCCCCC--H-HHH--HHHHHHHHh-cCCceEEEEeecCccccchhhhcccc-eEEecCC
Q 016800 155 PYKIIILDEADSMT--E-DAQ--NALRRTMET-YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPL 214 (382)
Q Consensus 155 ~~~vliiDe~d~l~--~-~~~--~~Ll~~le~-~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~ 214 (382)
+..||||||++.+. . +.. ..++..++. ......+|++++++..+...++.|+. .+++.++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 45799999999982 2 111 134444443 23455789999999999999999987 6777663
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.4e-05 Score=84.61 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
++....+..++..+. ...+.||+|||||.+++.+++.+ +..++.+||.+......+...+......
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~~~~g~i~~G~~~~------ 656 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDLQAMSRIFVGLCQC------ 656 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCHHHHHHHHhhHhhc------
Confidence 444456666666554 25789999999999999999998 4566788998876666555544444432
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH-------hc--------------CCceEEEEeecC----ccccchh
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-------TY--------------SKVTRFFFICNY----ISRIIEP 201 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le-------~~--------------~~~~~~Il~~~~----~~~l~~~ 201 (382)
....++||++++..+....+...+. +. .+.+.+++|.|+ ...+++.
T Consensus 657 ---------GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~n 727 (3245)
T 3vkg_A 657 ---------GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDN 727 (3245)
T ss_dssp ---------TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHH
T ss_pred ---------CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHH
Confidence 1378999999999887666555443 11 134556666674 3568999
Q ss_pred hhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---hc----------CCCHHHHHHHHHHHHHh
Q 016800 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---IS----------QGDLRRAITYLQGAARL 263 (382)
Q Consensus 202 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~s----------~gdlr~a~~~l~~~~~~ 263 (382)
+++|+..+.+..|+.+.+.+++. -.+|..-....+..++. .+ +-.+|.....|..+...
T Consensus 728 Lk~lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 728 LKKLFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHTTEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999998873 35676433333333332 11 23488888888765543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.2e-05 Score=79.00 Aligned_cols=155 Identities=14% Similarity=0.115 Sum_probs=82.7
Q ss_pred ccCcHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh
Q 016800 63 VAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (382)
.+|++..+..|.+++... ..+.+.|+|+.|+|||++|..+++...-...+...++.++.+.......+...+.......
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 389999999999998763 3334899999999999999999853100000112233333333222222222222111100
Q ss_pred hcC-CCCCC-----------------C---CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 142 VGS-GQRRG-----------------G---YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 142 ~~~-~~~~~-----------------~---~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
... ..... . ...+++-+||+|+++. .+..+. + +..+++|+||...... .
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~----f---~pGSRILVTTRd~~Va-~ 279 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNA----F---NLSCKILLTTRFKQVT-D 279 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHH----H---HSSCCEEEECSCSHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHh----h---CCCeEEEEeccChHHH-H
Confidence 000 00000 0 0012567999999988 222222 2 3566788887654322 1
Q ss_pred hhhc-ccceEEec----CCCHHHHHHHHHHHH
Q 016800 201 PLAS-RCAKFRFK----PLSEEVMSSRVLHIC 227 (382)
Q Consensus 201 ~l~s-r~~~i~~~----~~~~~~~~~~l~~~~ 227 (382)
.+.. +...+.++ +++.++..+++...+
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 1111 12234444 799999999987763
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=72.02 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=37.2
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec------Cccccchhhhcccc-eEEec
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------YISRIIEPLASRCA-KFRFK 212 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------~~~~l~~~l~sr~~-~i~~~ 212 (382)
++.+|+|||++.++++..+.|..+.+. ...+|+++. ++....+.+.+++. +..+.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999999987777777777765 344666553 33345566777765 33443
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=78.02 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH-------HHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------KTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~ 138 (382)
.+.....+...+. .+.++++||||||||+++..++..+...+ ..+... ++.......+.+.+ ..+.
T Consensus 191 ~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~-ApT~~Aa~~L~e~~~~~a~Tih~ll 263 (574)
T 3e1s_A 191 SEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLC-APTGKAARRLGEVTGRTASTVHRLL 263 (574)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEE-ESSHHHHHHHHHHHTSCEEEHHHHT
T ss_pred CHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEe-cCcHHHHHHhHhhhcccHHHHHHHH
Confidence 4555555555443 23589999999999999999998774332 233322 33222222222211 1111
Q ss_pred HhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
.... ...........+..+|||||+..++......|++.+ +....+|++++...
T Consensus 264 ~~~~-~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 264 GYGP-QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp TEET-TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred cCCc-chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 1111 000000001125679999999999988777666554 45678899887543
|
| >3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2 | Back alignment and structure |
|---|
Probab=97.96 E-value=4.4e-05 Score=62.49 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-
Q 016800 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE- 356 (382)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~- 356 (382)
+..+++.++.|+++++.+|.+.|+-|+.+|+..|++|..|.++|.....+ +++++....+....+..+.....|.++
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE--DIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACE--DIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--TTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--hccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 34568899999999999999999999999999999999999999876665 888887777777777788888889744
Q ss_pred HHHHHHHHHHHH
Q 016800 357 YLQLLDVASNVI 368 (382)
Q Consensus 357 ~l~l~~l~~~l~ 368 (382)
++.|...++-|+
T Consensus 110 ~i~LaqaviyLA 121 (213)
T 3ctd_A 110 LFFLSQASLYLA 121 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666655555
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.4e-05 Score=64.79 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=52.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC-c---------c-------hHHHHHHHHHHHHhhhcCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-R---------G-------INVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~-~---------~-------~~~~~~~l~~~~~~~~~~~~~ 147 (382)
++++||+|+||||++..++..+...+ ..+..+.+... + + .....+.... .....
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~-i~~~~----- 85 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNY-IMSNS----- 85 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHH-HHSTT-----
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHH-HHHHh-----
Confidence 79999999999999998887764322 12222221110 0 0 0001111111 11111
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..+++.+|+|||++.++.+....+..+.+ . ...+|+++.
T Consensus 86 ----~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~--gi~Vil~Gl 124 (223)
T 2b8t_A 86 ----FNDETKVIGIDEVQFFDDRICEVANILAE-N--GFVVIISGL 124 (223)
T ss_dssp ----SCTTCCEEEECSGGGSCTHHHHHHHHHHH-T--TCEEEEECC
T ss_pred ----hCCCCCEEEEecCccCcHHHHHHHHHHHh-C--CCeEEEEec
Confidence 11256899999999998776665555443 2 456777774
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=4.3e-05 Score=68.02 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|+||||+|||+++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 799999999999999999986
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-05 Score=61.66 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=64.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe-ecCCCcch-----------------------------HHHHH
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL-NASDDRGI-----------------------------NVVRT 132 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~-~~~~~~~~-----------------------------~~~~~ 132 (382)
..+++++++|.||||+|..++-...+.+.. ..++.+ ......+. .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~r-V~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKN-VGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCC-EEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 458999999999999999999887655421 112211 11000000 01111
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC------CCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhccc
Q 016800 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA------DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (382)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~------d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~ 206 (382)
.+..... .. ..+.+.+||+||+ +.++. +.++.++...++...+|+|++.+. +.|...+
T Consensus 108 ~l~~a~~-~l---------~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~A 171 (196)
T 1g5t_A 108 VWQHGKR-ML---------ADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH---RDILDLA 171 (196)
T ss_dssp HHHHHHH-HT---------TCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC---HHHHHHC
T ss_pred HHHHHHH-HH---------hcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc---HHHHHhC
Confidence 1111111 11 1237899999998 44543 358888899999999999998753 3444444
Q ss_pred c
Q 016800 207 A 207 (382)
Q Consensus 207 ~ 207 (382)
+
T Consensus 172 D 172 (196)
T 1g5t_A 172 D 172 (196)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.6e-05 Score=75.71 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=59.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCceEEeecCCCcchHHHHHHHHHHHHhhh-------------cCCCCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDDRGINVVRTKIKTFAAVAV-------------GSGQRRG 149 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~ 149 (382)
.++++|+||||||+++..+...+.... .....+. +-++.......+.+.+........ ......-
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vl-l~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEE-EEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEE-EEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 599999999999999998887764210 0112233 333333333333333332211100 0000000
Q ss_pred ------------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 150 ------------GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 150 ------------~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
.......+++||||++.++......|++. .+....+|++++..
T Consensus 245 ~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~---l~~~~~liLvGD~~ 299 (608)
T 1w36_D 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA---LPDHARVIFLGDRD 299 (608)
T ss_dssp -----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHT---CCTTCEEEEEECTT
T ss_pred ccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHh---CCCCCEEEEEcchh
Confidence 00011457999999998886665555544 45677899998754
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00046 Score=56.27 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
++|.|+||+||||+++.+++
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 89999999999999999998
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00034 Score=58.98 Aligned_cols=132 Identities=12% Similarity=0.144 Sum_probs=70.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh----cCCC--CCCCC---CCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV----GSGQ--RRGGY---PCPP 155 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~--~~~~~---~~~~ 155 (382)
+++.|++|+||||++..++..+...+ ..+..++.........+. .+..+..... ..+. ..... ...+
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G---~~V~v~d~D~q~~~~~~a-l~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~ 84 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG---VRVMAGVVETHGRAETEA-LLNGLPQQPLLRTEYRGMTLEEMDLDALLKAA 84 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCTTCHHHHH-HHTTSCBCCCEEEEETTEEEEECCHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CCEEEEEeCCCCChhHHH-HhcCccccCcceeecCCcccccccHHHHHhcC
Confidence 89999999999999999998875432 233333332211111111 1111000000 0000 00000 0015
Q ss_pred cEEEEEeCCCCCCHH------HHHHHHHHHHhcCCceEEEEeecC------------------ccccchhhhcccceEEe
Q 016800 156 YKIIILDEADSMTED------AQNALRRTMETYSKVTRFFFICNY------------------ISRIIEPLASRCAKFRF 211 (382)
Q Consensus 156 ~~vliiDe~d~l~~~------~~~~Ll~~le~~~~~~~~Il~~~~------------------~~~l~~~l~sr~~~i~~ 211 (382)
+.++||||+...+.. ..+.+...+ +....++.++|- .+.+++.+..++..+.+
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l---~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~l 161 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELL---AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVL 161 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHH---HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEE
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHH---cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEE
Confidence 679999998876321 122222232 334456666651 13466777788888888
Q ss_pred cCCCHHHHHHHH
Q 016800 212 KPLSEEVMSSRV 223 (382)
Q Consensus 212 ~~~~~~~~~~~l 223 (382)
-.++++++.+.+
T Consensus 162 vD~~p~~l~~rl 173 (228)
T 2r8r_A 162 IDLPPRELLERL 173 (228)
T ss_dssp BCCCHHHHHHHH
T ss_pred ecCCHHHHHHHH
Confidence 889999988776
|
| >2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00037 Score=56.60 Aligned_cols=88 Identities=20% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-
Q 016800 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE- 356 (382)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~- 356 (382)
+..+++.++.|+++++.+|.+.|+-|+.+|+..| +|..|.++|.....+ +++++....+....+..+.....|.++
T Consensus 11 Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsE--DIGlAdP~Al~~a~aa~~a~~~iG~PE~ 87 (204)
T 2r9g_A 11 GDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYE--DIGLGNPAAAARTVNAVLAAEKLGLPEA 87 (204)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--TTGGGCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh--hccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 3557889999999999999999999999999999 999999999876665 888888777788888888888899744
Q ss_pred HHHHHHHHHHHH
Q 016800 357 YLQLLDVASNVI 368 (382)
Q Consensus 357 ~l~l~~l~~~l~ 368 (382)
++.|...++-|+
T Consensus 88 ~i~LaqaviyLA 99 (204)
T 2r9g_A 88 RIPLADVVVDLC 99 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 676655555544
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00023 Score=61.19 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=62.2
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhc-
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG- 143 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 143 (382)
-.+...+.+..++..+ +++++||+|+|||.++..++... ...++.+.+.. .-..++...+..+......
T Consensus 94 l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~-~L~~q~~~~~~~~~~~~v~~ 163 (237)
T 2fz4_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTL-ALAEQWKERLGIFGEEYVGE 163 (237)
T ss_dssp CCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSH-HHHHHHHHHHGGGCGGGEEE
T ss_pred cCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCH-HHHHHHHHHHHhCCCCeEEE
Confidence 3556666666555442 49999999999999999888775 22334343321 1223333333331100000
Q ss_pred -CCCCCC--C--------------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 144 -SGQRRG--G--------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 144 -~~~~~~--~--------------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.+.... . .......+|||||+|.+....... +++..+...++.++++.
T Consensus 164 ~~g~~~~~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~---i~~~~~~~~~l~LSATp 228 (237)
T 2fz4_A 164 FSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQ---IAQMSIAPFRLGLTATF 228 (237)
T ss_dssp ESSSCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHH---HHHTCCCSEEEEEEESC
T ss_pred EeCCCCCcCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHH---HHHhccCCEEEEEecCC
Confidence 000000 0 000146799999999997654433 44444445556666554
|
| >3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00014 Score=58.88 Aligned_cols=87 Identities=17% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-HH
Q 016800 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE-YL 358 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~l 358 (382)
.+++.++.|+++++.+|.+.|+-|+.+|+..|++|..|.++|.....+ ++++.....+....+..+.....|.++ ++
T Consensus 6 ~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE--DIGlAdP~Al~~a~aa~~a~~~iG~PE~~i 83 (201)
T 3bge_A 6 RFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE--DVGNADPRAMQVALAAWDCFTRVGAYEGER 83 (201)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--TTGGGCTTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--hccCCCHHHHHHHHHHHHHHHHHCCcHHHH
Confidence 357889999999999999999999999999999999999999876665 888877777777777777777888744 56
Q ss_pred HHHHHHHHHH
Q 016800 359 QLLDVASNVI 368 (382)
Q Consensus 359 ~l~~l~~~l~ 368 (382)
.|...++-|+
T Consensus 84 ~LaqaviyLA 93 (201)
T 3bge_A 84 AIAQAIIYLS 93 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00019 Score=78.37 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.+++|+||||||||++|.+++.+...
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~~ 1453 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQR 1453 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35999999999999999999988743
|
| >1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00015 Score=56.85 Aligned_cols=122 Identities=9% Similarity=0.047 Sum_probs=76.3
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 016800 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (382)
Q Consensus 75 ~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 154 (382)
+.++.+-.|.+||+|+.-.-....+..+.+.+...+.....+..+++ . ..+...+......+..+
T Consensus 11 ~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~--~---~~~~~l~~~~~s~slF~---------- 75 (140)
T 1jql_B 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--N---TDWNAIFSLCQAMSLFA---------- 75 (140)
T ss_dssp HHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCST--T---CCHHHHHHHHHCCCTTC----------
T ss_pred HHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecC--C---CCHHHHHHHHhcCCCCC----------
Confidence 34444444559999999888888888887766433322222333333 1 22334343333333332
Q ss_pred CcEEEEEeCCCC-CCHHHHHHHHHHHHhcCCceEEEEeecCc------cccchhhhcccceEEe
Q 016800 155 PYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAKFRF 211 (382)
Q Consensus 155 ~~~vliiDe~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------~~l~~~l~sr~~~i~~ 211 (382)
++++|+|.+++. ...+..+.|..+++.+++.+.+|++.... .++.+++.+.+..+.+
T Consensus 76 ~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp CCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred CCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 789999998765 56677788999999999988888887432 2355666665555543
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0029 Score=60.87 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=52.3
Q ss_pred CcEEEEEeCCCCCC----HHHHHHHHHHHHhc-CCceEEEEeecCcc--ccchhhhcccc-eEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSMT----EDAQNALRRTMETY-SKVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l~----~~~~~~Ll~~le~~-~~~~~~Il~~~~~~--~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 224 (382)
++-+|||||++.+. .+....|.++.... ...+.+|+++..+. .+...+++.+. .+.|..-+..+...+|.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 45799999999773 44556666666654 44667788887776 67788888887 78898888888888773
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.001 Score=58.00 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+..++|.|+||+||||+++.+++.+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3348999999999999999999975
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00053 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 654
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0052 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00066 Score=54.83 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.003 Score=53.31 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 154 PPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 154 ~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
...+++|+||+|.+. ......+..++...+....+++.|..+
T Consensus 157 ~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 200 (220)
T 1t6n_A 157 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 200 (220)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred ccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeec
Confidence 356899999999883 344455666666555555555555433
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0007 Score=55.90 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=42.4
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCceEEE--Ee-ecCc-cccchhhhcc--cceEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFF--FI-CNYI-SRIIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~I--l~-~~~~-~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 224 (382)
++.++|+||++.+ +....+.|.++++.+.. .++ ++ +... ..+.+.+..+ +.++.+.+-+.+.+..-+.
T Consensus 105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~--~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~ 181 (189)
T 2i3b_A 105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGT--IILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181 (189)
T ss_dssp CCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSC--CEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHH
T ss_pred CCCEEEEeCCCccccccHHHHHHHHHHHhCCCc--EEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHH
Confidence 6789999998776 45577888888876432 232 22 1222 2455666664 4578887777666655553
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00073 Score=55.58 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=50.0
Q ss_pred EEEeCCCCCCHH-HHHHHHHHHhcCCCCCCCceEEeecC-CCcchHHHHHHHHHHHHhh-hcCCC-CCCCCCCCCcEEEE
Q 016800 85 MLFYGPPGTGKT-TTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVA-VGSGQ-RRGGYPCPPYKIII 160 (382)
Q Consensus 85 lll~Gp~G~GKt-~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~~~~~~vli 160 (382)
+++|||.|+||| ++++++.+.... ...++.+.+. |.+....+...+....... ..... .... ..+..+|+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~--~~~~DvIl 96 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQE--ALGVAVIG 96 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHH--HHTCSEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHh--ccCCCEEE
Confidence 799999999999 888888877632 2445555443 2111111111111100000 00000 0000 01456999
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 161 iDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
|||++.+ ++ +..++..+-+. ...+|+++
T Consensus 97 IDEaQFf-k~-~ve~~~~L~~~--gk~VI~~G 124 (195)
T 1w4r_A 97 IDEGQFF-PD-IVEFCEAMANA--GKTVIVAA 124 (195)
T ss_dssp ESSGGGC-TT-HHHHHHHHHHT--TCEEEEEE
T ss_pred EEchhhh-HH-HHHHHHHHHHC--CCeEEEEe
Confidence 9999999 55 54555555443 23456654
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00039 Score=57.47 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++||.|+||||.+..+++.+.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 79999999999999988888764
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0093 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.726 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||||+||||+++.+++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0056 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=61.91 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|+||+||||+++.+++.+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999998876
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00035 Score=58.46 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=51.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC-Cc-chHHHHHHHHHHHHhhhcCCC---CCCCCCCCCcEEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DR-GINVVRTKIKTFAAVAVGSGQ---RRGGYPCPPYKII 159 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~vl 159 (382)
.+++||.|+||||.+...+......+ ..++.+.+.- .+ +...+...+.. ......... ..... .+++.+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~~d~R~ge~~i~s~~g~-~~~a~~~~~~~~~~~~~-~~~~dvV 105 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPCIDNRYSEEDVVSHNGL-KVKAVPVSASKDIFKHI-TEEMDVI 105 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC------------------CCEEECSSGGGGGGGC-CSSCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEeccCCcchHHHHHhhcCC-eeEEeecCCHHHHHHHH-hcCCCEE
Confidence 68999999999999988887764332 3444444331 11 11112111110 000000000 00001 1247899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 160 ILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 160 iiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
+|||++.++++..+.+..+.+ ....+|+++-
T Consensus 106 iIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl 136 (214)
T 2j9r_A 106 AIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGL 136 (214)
T ss_dssp EECCGGGSCTTHHHHHHHHHH---TTCEEEEEEC
T ss_pred EEECcccCCHHHHHHHHHHhh---CCCEEEEEec
Confidence 999999998776655444433 2456777763
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0026 Score=51.91 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=17.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999887
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.004 Score=53.20 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=16.7
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIA 103 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la 103 (382)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 59999999999998765554
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0019 Score=54.29 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=57.5
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC--CC---------CceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCC
Q 016800 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL--YK---------SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (382)
Q Consensus 80 ~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 148 (382)
.+.++++|.|++|+|||+++..+......... .. ..+.-++.+.. +..+.....+........
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~---~~~~~~~~~~~~~~~~~~--- 83 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGH---VKLRYKLSDYLKTRAKFV--- 83 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCC---GGGTHHHHHHHHHHGGGE---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCc---HHHHHHHHHHHHhccccC---
Confidence 34556999999999999999999987543211 00 11222333322 222233333332211100
Q ss_pred CCCCCCCcEEEEEeCC-CCC-CHHHHHHHHHHHHh----cCCceEEEEeecCcccc
Q 016800 149 GGYPCPPYKIIILDEA-DSM-TEDAQNALRRTMET----YSKVTRFFFICNYISRI 198 (382)
Q Consensus 149 ~~~~~~~~~vliiDe~-d~l-~~~~~~~Ll~~le~----~~~~~~~Il~~~~~~~l 198 (382)
..-++++|-. +.- .......+..++.. .+....+++++|..+..
T Consensus 84 ------~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 84 ------KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp ------EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred ------CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 2347777766 222 23445556666654 33456688888877653
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0067 Score=53.85 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999863
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0083 Score=56.03 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+++.|++|+||||++..++..+...
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999887543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0055 Score=58.36 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=47.3
Q ss_pred CcEEEEEeCCCCCCH----HHHHHHHHHHHhcC-CceEEEEeecCcc--ccchhhhcccc-eEEecCCCHHHHHHHHH
Q 016800 155 PYKIIILDEADSMTE----DAQNALRRTMETYS-KVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 155 ~~~vliiDe~d~l~~----~~~~~Ll~~le~~~-~~~~~Il~~~~~~--~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 224 (382)
++-+++|||+..+.. +..+.|..+..... ....+|+++..+. .+...+++.+. .+.|.--+..+.+.++.
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 345899999976543 22334444444433 3566778887765 46777888776 78998888889888773
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0086 Score=50.24 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=25.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
++|+||+|+|||+++..++. . ....++.++...
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCC
Confidence 89999999999999999988 2 123555566544
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0044 Score=56.45 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+++++... .. +.++..... ..+++.||+|+||||++++++..+.
T Consensus 103 ~~~l~~lg~~-~~---l~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 103 VLTMEELGMG-EV---FKRVSDVPR-GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CCCTTTTTCC-HH---HHHHHHCSS-EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHcCCh-HH---HHHHHhCCC-CEEEEECCCCCCHHHHHHHHHhccc
Confidence 3456666433 33 333333322 2599999999999999999988764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0025 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999765
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.003 Score=52.55 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..+++|+||+|.+.. .....+..++...+....+++.|.
T Consensus 146 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SA 185 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred cCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 567999999997643 334455555555554444555443
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0021 Score=58.59 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=25.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
++|+|+||+|||+++..++..+...+ ..++.++.
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~ 99 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDA 99 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeC
Confidence 89999999999999999998764221 24455554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0033 Score=57.11 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCC-c--EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 72 VLTNTLETANCP-H--MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 72 ~l~~~l~~~~~~-~--lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.|-..+..|..+ . ++|+||||+||||++..++..+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444445423332 2 89999999999999999998763
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0045 Score=56.21 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=28.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC---CCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL---YKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~---~~~~~~~~~~~~ 123 (382)
++|+||||+|||+++..++.....+.. ....+++++...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 799999999999999999987532210 234566666654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0015 Score=60.03 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|+||+|+||||+++.++...
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999999876
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00055 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++|.|++|+||||+++.+++.+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0085 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999987
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0027 Score=69.47 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=22.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+++++||||+|||+++.+++.+....
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 49999999999999999999887533
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0073 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||+|.+..+++.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999987
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0014 Score=64.26 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC------CCCceEEeecCCCcchHHHH-HHHHHHH
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL------YKSRVLELNASDDRGINVVR-TKIKTFA 138 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~------~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 138 (382)
|...+..+...+..+. .++++.+|+|+|||.++..++..+....+ ....++.+-+... -..++. +.+..+.
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~-L~~Q~~~~~~~~~~ 260 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNV-LVDDPKDKTFTPFG 260 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC------------CCTTTC
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHH-HHHHHHHHHHHhcc
Confidence 3444444444444443 35899999999999998888877643321 1233444433221 112222 1111111
Q ss_pred Hhh-------h-cCCC-------C----------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 139 AVA-------V-GSGQ-------R----------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 139 ~~~-------~-~~~~-------~----------~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
... . .... . ...+......+|||||+|++.......+..+++..+....+.++++
T Consensus 261 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTAT 340 (590)
T 3h1t_A 261 DARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTAT 340 (590)
T ss_dssp SSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESS
T ss_pred hhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccc
Confidence 000 0 0000 0 0111223567999999999975444555566666555556666666
Q ss_pred Cc
Q 016800 194 YI 195 (382)
Q Consensus 194 ~~ 195 (382)
+.
T Consensus 341 P~ 342 (590)
T 3h1t_A 341 PL 342 (590)
T ss_dssp CS
T ss_pred cc
Confidence 44
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00077 Score=54.84 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|+|++|+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999987
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0075 Score=53.61 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCCCcccCcHHHHHHHHH---------------HHHcCCCCcEEEeCCCCCCHHHHHH-HHHHHh
Q 016800 58 KQVKDVAHQEEVVRVLTN---------------TLETANCPHMLFYGPPGTGKTTTAL-AIAHQL 106 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~---------------~l~~~~~~~lll~Gp~G~GKt~la~-~la~~l 106 (382)
.+|+++--.+.+++.+.. .+..+...++++.+|+|+|||.... .+...+
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 567777666776655532 1223323469999999999997643 444444
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00063 Score=61.45 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++..+...+..+..++++|.|++|+||||+++.+++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334444445567767799999999999999999999873
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0036 Score=52.90 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
+..++|+||+|.+... ....+..++...+....+++.|..
T Consensus 155 ~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred hCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEee
Confidence 5679999999987432 234455555555555555555433
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0052 Score=55.88 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++..+.
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999987764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.007 Score=55.34 Aligned_cols=23 Identities=52% Similarity=0.622 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++..+.
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHH
Confidence 89999999999999999988763
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.006 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.||+|+||||++..++..+.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998874
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0055 Score=56.41 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhc-------CCC------
Q 016800 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-------SGQ------ 146 (382)
Q Consensus 80 ~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~------ 146 (382)
+...++++.+|+|+|||..+...+-...........++.+-+.. .-..++.+.+..+...... ...
T Consensus 42 ~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~-~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (395)
T 3pey_A 42 NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSR-ELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI 120 (395)
T ss_dssp SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSH-HHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCB
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCH-HHHHHHHHHHHHHhcccCeeEEEEecCchhhhccC
Confidence 33346999999999999876654443322221222344333322 1233333444433211000 000
Q ss_pred ----------------CCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCceEEEEeec
Q 016800 147 ----------------RRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 147 ----------------~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
........+..+||+||+|.+.. .....+..++...+....+++.|.
T Consensus 121 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 185 (395)
T 3pey_A 121 NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSA 185 (395)
T ss_dssp CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEe
Confidence 00011123567999999998754 233445555555555555555553
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0028 Score=53.52 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-CCcchHHHHHHHHHHHHhhhcCCCCCCCC-CCCCcEEEEEe
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGY-PCPPYKIIILD 162 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~vliiD 162 (382)
.+++||.|+||||.+...+......+ .+++.+.+. +.+.-..+...+.. .............. ..+++.+|+||
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g---~kvli~kp~~D~Ryg~~i~sr~G~-~~~a~~i~~~~di~~~~~~~dvViID 97 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYAKDTRYSSSFCTHDRN-TMEALPACLLRDVAQEALGVAVIGID 97 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTT---CCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEES
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEeecCCccchHHHHhhcCC-eeEEEecCCHHHHHHHhccCCEEEEE
Confidence 79999999999988777766654332 233333322 11111222111100 00000000000000 00256799999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 163 EADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 163 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
|++.+.. ...+.+.+.+ ....+|+++-
T Consensus 98 EaQF~~~--v~el~~~l~~--~gi~VI~~GL 124 (234)
T 2orv_A 98 EGQFFPD--IVEFCEAMAN--AGKTVIVAAL 124 (234)
T ss_dssp SGGGCTT--HHHHHHHHHH--TTCEEEEECC
T ss_pred chhhhhh--HHHHHHHHHh--CCCEEEEEec
Confidence 9999974 6667777776 3456777763
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.002 Score=53.95 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
-.+...+.+..++.. .++++.+|+|+|||.++...+...
T Consensus 34 l~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 34 LRPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 344555555544432 369999999999999988777654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0067 Score=50.67 Aligned_cols=22 Identities=45% Similarity=0.862 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||+|.+..+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0009 Score=55.71 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+..++|.||+|+||||+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999999987
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.011 Score=49.10 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..+++|+||+|.+... ....+..++...+....+++.|..
T Consensus 144 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 184 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSAT 184 (207)
T ss_dssp TCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSS
T ss_pred hceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEe
Confidence 5679999999987432 234455555554545555555543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00099 Score=54.37 Aligned_cols=24 Identities=42% Similarity=0.731 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.++|+|++|+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 459999999999999999999987
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++|.|++|+||||+++.+++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999987
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0023 Score=59.60 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=54.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC----------CCCCCCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ----------RRGGYPCP 154 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------~~~~~~~~ 154 (382)
.++.|+||+|||+++..++.. .....+.+. ....+.+++.+.... ....... ........
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT-~~aa~~l~~kl~~~~-~~~~~~~~V~T~dsfL~~~~~~~~~ 233 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF--------EEDLILVPG-RQAAEMIRRRANASG-IIVATKDNVRTVDSFLMNYGKGARC 233 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT--------TTCEEEESC-HHHHHHHHHHHTTTS-CCCCCTTTEEEHHHHHHTTTSSCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc--------CCeEEEeCC-HHHHHHHHHHhhhcC-ccccccceEEEeHHhhcCCCCCCCC
Confidence 799999999999999776531 112223332 223444444442110 0000000 00000001
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
...++||||+..++......++..+ +. ..+|++++..
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~---~~-~~vilvGD~~ 270 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMS---LC-DIAYVYGDTQ 270 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHT---TC-SEEEEEECTT
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhC---CC-CEEEEecCcc
Confidence 2679999999999988777776653 22 6788888653
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0055 Score=55.10 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||||+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.013 Score=49.60 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998653
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=53.89 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|++|+||||+++.+++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999987
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.014 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++++||||+|||+++..++....
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999988877653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.074 Score=41.81 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0015 Score=53.42 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.011 Score=52.07 Aligned_cols=120 Identities=9% Similarity=0.136 Sum_probs=65.0
Q ss_pred cCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh--
Q 016800 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-- 141 (382)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 141 (382)
.-.+...+.+..++..+ +.++.+|+|+|||.++..++....... ...++.+-+. ..-..++.+.+..+....
T Consensus 113 ~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt-~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPT-TALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSS-HHHHHHHHHHHHHHTSCCGG
T ss_pred CccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECC-HHHHHHHHHHHHHhcccccc
Confidence 34555666666666652 468899999999999987776543211 1234444332 223455656565553210
Q ss_pred ----hcCCCCC-----CCC----------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 142 ----VGSGQRR-----GGY----------------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 142 ----~~~~~~~-----~~~----------------~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
...+... ... ......+||+||+|.+... .+..++........+++.|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~---~~~~il~~~~~~~~~l~lS 259 (282)
T 1rif_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGK---SISSIISGLNNCMFKFGLS 259 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHH---HHHHHTTTCTTCCEEEEEC
T ss_pred eEEEEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcc---cHHHHHHHhhcCCeEEEEe
Confidence 0000000 000 1235689999999999865 4445555443334444444
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=53.27 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=96.59 E-value=0.019 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=18.3
Q ss_pred CCcEEEeCCCCCCHHHHHHH-HHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALA-IAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~-la~~l 106 (382)
..++++.+|+|+|||..+.. +...+
T Consensus 64 ~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCchHHHHHHHHHHHHh
Confidence 34699999999999987643 33333
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0034 Score=62.25 Aligned_cols=42 Identities=31% Similarity=0.387 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
-++...+++...+... +..||+||||||||+++..+...+..
T Consensus 190 LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp CCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3677778888777643 24799999999999988877777653
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.+++.+.
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.012 Score=56.09 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=25.3
Q ss_pred CcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
..++|||||+|.+.. .....+..++...+....+|+.+..+
T Consensus 235 ~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 277 (479)
T 3fmp_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (479)
T ss_dssp GCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCC
T ss_pred cCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCC
Confidence 567999999997632 33444455555555556666665443
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0054 Score=52.45 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=24.0
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..++||+||+|.+... ....+..++...+....+++.|..
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 5679999999977432 233455555555555555555543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0016 Score=54.24 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=22.7
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
....+.|.||+|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 33358999999999999999999886
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.002 Score=55.87 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.+++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999987
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=53.40 Aligned_cols=25 Identities=48% Similarity=0.654 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
...++|+|++|+||||+++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3459999999999999999999983
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|+||+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999874
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0033 Score=55.60 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.025 Score=52.27 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=27.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCC---CCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPEL---YKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~---~~~~~~~~~~~~ 123 (382)
+.|+||+|+||||++..++-....+.. ....+++++..+
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 899999999999999988755433210 123466666654
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0018 Score=54.70 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|+||+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.013 Score=52.90 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+...+.-.+..+. .+++.||+|+||||+++.++..+
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 4555555566655 59999999999999999999876
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.013 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||++..++..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 78999999999999999998874
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.008 Score=51.84 Aligned_cols=39 Identities=15% Similarity=0.368 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..++||+||+|.+... ....+..++...+....+++.|.
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SA 225 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 225 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEES
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEec
Confidence 5679999999976432 23445555555544444444443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.002 Score=52.67 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++...
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999875
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0021 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=53.72 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999987
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.015 Score=52.71 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+.+..++..+ .++++.+|+|+|||..+...+...
T Consensus 33 Q~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 33 QMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp HHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHH
Confidence 333444444432 369999999999999876655544
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.002 Score=52.78 Aligned_cols=23 Identities=48% Similarity=0.907 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999876
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0019 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.013 Score=49.34 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEee-cCcccc
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFIC-NYISRI 198 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~-~~~~~l 198 (382)
..+++|+||+|.+... ....+..++...+....+++.| +.+..+
T Consensus 150 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 150 TAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKL 195 (219)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGG
T ss_pred cceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHH
Confidence 4579999999987532 2344555566555455454444 444433
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0022 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+..++|.|++|+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33589999999999999999999873
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0025 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.+++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999876
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0086 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998654
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0094 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=17.3
Q ss_pred cEEEeCCCCCCHHHHH-HHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTA-LAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la-~~la~~l 106 (382)
++++.+|+|+|||... ..+...+
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 6999999999999774 3344444
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.02 Score=52.59 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=25.6
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHHHhcCCceEEEEee
Q 016800 154 PPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 154 ~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
....+||+||+|.+.. .....+..++...+....+++.|
T Consensus 151 ~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 151 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp TTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred cccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 3667999999998854 44455666666555455555554
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0023 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|++|+||||+++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.07 Score=42.86 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=16.1
Q ss_pred EEEeCCCCCCHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALA 101 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~ 101 (382)
+.|.||+|+||||+++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999999995
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0032 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0024 Score=53.14 Aligned_cols=23 Identities=48% Similarity=0.917 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|+||+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.04 Score=46.92 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+|||++++.+...-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 49999999999999999998654
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.003 Score=53.94 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|++|+||||+++.+++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0025 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.+++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.017 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|.+|+|||+++..+...-+
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~f 38 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDSF 38 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCcCHHHHHHHHHhCCC
Confidence 89999999999999999886543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=64.05 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++..+.
T Consensus 735 VlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 735 VEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999998764
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0026 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999887
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.012 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+...-+
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCcCHHHHHHHHhcCCC
Confidence 89999999999999999987654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.006 Score=50.71 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCC--C-cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANC--P-HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~--~-~lll~Gp~G~GKt~la~~la~~l 106 (382)
++.+..+...+..... + .+.+.|++|+||||+++.++..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455555555554322 2 28999999999999999999876
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0028 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||+|+||||+++.+.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998875
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.013 Score=63.42 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=25.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++|+||||+|||+++..++...... ...+++++..
T Consensus 37 ~lI~G~pGsGKT~LAlqla~~~~~~---G~~vlYI~te 71 (1706)
T 3cmw_A 37 VEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 71 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhC---CCceEEEEec
Confidence 8999999999999999998765322 2344455443
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0031 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|++|+||||+++.+++.+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999987
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.23 E-value=0.03 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+.....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 389999999999999999987643
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=49.25 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=24.4
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..++||+||+|.+... ....+..++...+....+++.+.
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 206 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 206 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEES
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEe
Confidence 5679999999987532 23445555555555555555543
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0026 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..++|.|++|+||||+++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999886
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999987
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0031 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.044 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=18.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.+|+|+|||..+...+-..
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~~ 82 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLEK 82 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHHH
Confidence 59999999999998765554443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.003 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 38999999999999999999876
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0094 Score=47.48 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987643
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0047 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999998873
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.046 Score=46.67 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=17.2
Q ss_pred cEEEeCCCCCCHHHHHH-HHHHHh
Q 016800 84 HMLFYGPPGTGKTTTAL-AIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~-~la~~l 106 (382)
++++.+|+|+|||..+. .+...+
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 59999999999998643 334444
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.018 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0027 Score=52.50 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0032 Score=53.06 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=35.6
Q ss_pred ccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+-.+.+....+...+...+.+.++|.|++|+||||++..++..+
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33556667777777766677779999999999999999999886
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0034 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 38999999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=52.26 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+||||+++.++..+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=52.40 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.|.||+|+||||+++.++..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999876
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0032 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999886
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.016 Score=53.09 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=29.2
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.......++..+.+... ...+|++|.+..
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 56799999964 6777777777777765421 345777776543
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0021 Score=53.58 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=21.8
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++...+.+.+.....+.-.+++.|++|+|||+++..+....+
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~ 55 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3455555555555444433599999999999999999986543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.025 Score=50.13 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||++..++..+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998874
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.019 Score=51.42 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=27.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+++.|+||+|||+++..++......+ ..++.+...
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE 105 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE 105 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC
Confidence 89999999999999999997764332 355656554
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0038 Score=51.34 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0088 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.823 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999998873
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.018 Score=51.23 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=29.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+.+++|+||+- .+.......+.+.+.+......+|+++....
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 56799999975 5677777777777776544445666776544
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.++|.|++|+||||+++.+++.+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999999998743
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0039 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.015 Score=49.60 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=27.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~ 123 (382)
++|+||+|+|||+++..++.....+. .....++.++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 89999999999999999998642221 0123556666554
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.018 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 389999999999999999987643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.04 Score=45.46 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+|||++++.+...-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999998654
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0052 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+|||+++..+++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999987
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0069 Score=51.16 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++..+.++..+...+.+.++|.|++|+|||+++..++....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345556677776666666699999999999999999998864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0049 Score=53.05 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999876
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0037 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.028 Score=52.94 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+...+.+..++.. ++++.+|+|+|||..+..++...
T Consensus 11 ~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 11 RIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHH
Confidence 44444444444433 79999999999999988877665
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.16 Score=41.14 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+++.|++|+|||++++.+...-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 359999999999999999987653
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.02 Score=53.00 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
..++||+||+|.+... ....+..++...+....+|+.|..
T Consensus 183 ~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 183 YIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp TCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred cCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 4679999999987432 234555666665556666665543
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.033 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0043 Score=50.94 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999998754
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.93 E-value=0.011 Score=55.29 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||++..++..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998863
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.004 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.+++.+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.011 Score=55.15 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=35.1
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..++++--.......|...+. .....++|.||+|+||||++++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456666545555566666643 2222389999999999999999999874
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.025 Score=48.05 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..+++|+||+|.+... ....+..++...+....+++.|.
T Consensus 171 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 171 DLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp TCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred cccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 5679999999987432 23455566665555554554443
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0041 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.028 Score=53.87 Aligned_cols=121 Identities=9% Similarity=0.125 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh---
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV--- 142 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 142 (382)
.+.....+..++.. .+.+++||+|+|||.++..++....... ...++.+-+.. .-..++.+.+..+.....
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~-~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTT-ALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSH-HHHHHHHHHHHHTTSSCGGGE
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcH-HHHHHHHHHHHHhhcCCccce
Confidence 45555666655554 3589999999999999877776543211 12444444432 233445555544311100
Q ss_pred ---cCCCCC-----CC----------------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCc-eEEEEeecCc
Q 016800 143 ---GSGQRR-----GG----------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV-TRFFFICNYI 195 (382)
Q Consensus 143 ---~~~~~~-----~~----------------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~ 195 (382)
.++... .. .......+|||||+|.+.... +..++...... .++.++++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~---~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS---ISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHH---HHHHGGGCTTCCEEEEEESCGG
T ss_pred EEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCccc---HHHHHHhcccCcEEEEEEeCCC
Confidence 000000 00 012356899999999998754 33444444333 3444455543
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.022 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.038 Score=55.81 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=18.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.||+|+|||+++..+...
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999977666443
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.077 Score=44.37 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.+++.|++|+|||++++.+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345999999999999999998765
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0049 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.013 Score=50.88 Aligned_cols=39 Identities=13% Similarity=0.315 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
+.++|||||+|.+... ....+..++...+....+++.+.
T Consensus 201 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SA 240 (262)
T 3ly5_A 201 NLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA 240 (262)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECS
T ss_pred cCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEe
Confidence 5679999999987442 23445555555555455555443
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.11 Score=49.35 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+||||++..++..+.
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.018 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987643
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0049 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 38899999999999999999874
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.046 Score=50.57 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCceEEEEee
Q 016800 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 155 ~~~vliiDe~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
..++||+||+|.+.. .....+..++...+....+++.|
T Consensus 179 ~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 179 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred heeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 567999999997643 23455556665555555555554
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0048 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999988654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.018 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0042 Score=51.68 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48999999999999999998876
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0098 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+.....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 389999999999999999987643
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0053 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.+++..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 38999999999999999999875
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.026 Score=46.52 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+|||++++.+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0061 Score=49.56 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.++..+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999976
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.077 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|+||+|||+++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.059 Score=42.50 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.056 Score=42.35 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+++.|++|+|||++++.+...-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998753
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.009 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+||||+++.++..+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999998873
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.02 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.14 Score=54.15 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHH
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~ 104 (382)
.|..++..+...+.+++..+.+++||.|+|||.++...+-
T Consensus 607 ~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~ 646 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 646 (1151)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHH
Confidence 4555555555555566655799999999999988764443
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.02 Score=45.41 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987543
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0038 Score=52.06 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
+..+|+|||++.++++..+.+..+.+ ....+|+.+
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 56799999999999887777777763 233455544
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.79 E-value=0.13 Score=40.36 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 378999999999999999986543
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.097 Score=42.83 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999876653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.067 Score=47.29 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+.|++|+||||++..++..+.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 77889999999999999998874
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.024 Score=45.85 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhhCCC
Confidence 89999999999999999987543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0065 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998865
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.021 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.018 Score=51.77 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=29.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEEeecCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDD 124 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~~ 124 (382)
++|+||||+|||+++..++.....+. .....+++++....
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 89999999999999999998754331 01245667766553
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.029 Score=51.49 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=24.7
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
+..+||+||+|.+... ....+..++...+....+++.|..
T Consensus 162 ~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 162 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred hCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 5679999999987432 233455555555555555555543
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.019 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+.....
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECcCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987643
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.026 Score=46.95 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 399999999999999999987643
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.051 Score=46.35 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=24.3
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
..+++|+||+|.+... ....+..++...+....+++.+.
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SA 215 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 215 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEES
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEe
Confidence 5679999999987542 24445555655555555555543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.01 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+|||+++..+++.+
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 7899999999999999999986
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.032 Score=46.55 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+|||++++.+...
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999998754
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.14 Score=41.66 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
...+++.|++|+|||++++.+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.032 Score=45.45 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~ 45 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRF 45 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 389999999999999999986543
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0092 Score=48.01 Aligned_cols=26 Identities=19% Similarity=0.020 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++.+.|.|++|+||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 44589999999999999999998874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0075 Score=50.48 Aligned_cols=42 Identities=38% Similarity=0.513 Sum_probs=29.7
Q ss_pred hcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 54 k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
..+|+++ |+..++.. +..|. .+.|.||.|+||||+++.++..
T Consensus 4 ~i~pk~~----g~~~~l~~----i~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTL----GQKHYVDA----IDTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSH----HHHHHHHH----HHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCH----hHHHHHHh----ccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 4567766 33334333 34443 4889999999999999999876
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.047 Score=51.15 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=17.7
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHH
Q 016800 83 PHMLFYGPPGTGKTTTA-LAIAHQ 105 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la-~~la~~ 105 (382)
.++++.||+|+|||..+ ..+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~ 26 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVRE 26 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35899999999999875 445533
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0084 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.024 Score=46.75 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999987654
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.035 Score=52.55 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
-.+...+.+..++..+ ..++.||+|+|||..+..++...
T Consensus 94 l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 4566666666655542 49999999999999988887765
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0098 Score=51.28 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.++..+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 59999999999999999999987
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.064 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..+++.|++|+|||+++..+...-+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3499999999999999999987653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.026 Score=46.48 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 49999999999999999998654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.13 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++....
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999999999987653
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.44 Score=42.08 Aligned_cols=135 Identities=10% Similarity=0.126 Sum_probs=67.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC-----CCC-----------CCceEEeecCCCcc-hHHHHHHHHHHHHhhhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP-----ELY-----------KSRVLELNASDDRG-INVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~-----~~~-----------~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 146 (382)
.+.+.|.||+||||+++++...-... ... ...+..++.+.... ...+...+..........
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~-- 86 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD-- 86 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS--
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc--
Confidence 38999999999999999998653221 100 11122233333211 112222222222222211
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch------hhhcc---cceEEecCCCHH
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE------PLASR---CAKFRFKPLSEE 217 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~------~l~sr---~~~i~~~~~~~~ 217 (382)
..--++++|=-+..+.. ...+++.+........+|++.|..+...+ .+... ...+.+...+..
T Consensus 87 -------ad~il~VvD~~~~~~~~-~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 87 -------VNAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDER 158 (301)
T ss_dssp -------CSEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHH
T ss_pred -------CCEEEEEEECCCCCChH-HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCC
Confidence 14456777655556544 34455556554234456777776655421 11111 124556666666
Q ss_pred HHHHHHHHHHH
Q 016800 218 VMSSRVLHICN 228 (382)
Q Consensus 218 ~~~~~l~~~~~ 228 (382)
.+..++..+..
T Consensus 159 gv~~l~~~l~~ 169 (301)
T 1wf3_A 159 QVAELKADLLA 169 (301)
T ss_dssp HHHHHHHHHHT
T ss_pred CHHHHHHHHHH
Confidence 66666655554
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.024 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0074 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 5
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.039 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.029 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.021 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0078 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||+|+|||+++..+++.+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCC
Confidence 489999999999999999999873
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.046 Score=53.31 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=30.9
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+...
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 56799999975 56777777888888765444456777776553
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0088 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.|++|+||||+++.|++.+.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 389999999999999999999763
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.0026 Score=52.90 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=22.1
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 78 ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 78 ~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
...+.-.+++.|++|+|||+++..+....
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 33333359999999999999998887543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.14 Score=47.83 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
++|.|++|+||||++..++..+..
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999988753
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.021 Score=46.26 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+...-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 389999999999999999987543
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.021 Score=45.37 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.023 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+.....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987643
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.018 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.+++.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 389999999999999998853
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.013 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 99999999999999999987543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0088 Score=49.78 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=18.9
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+.|.||+|+||||+++.++.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.035 Score=45.42 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0072 Score=49.74 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+|||+++..+++..
T Consensus 37 ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999875
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.01 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 38999999999999999999875
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.082 Score=42.93 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987543
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.012 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|+|++|+||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999975
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.012 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+|||+++..+++.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 37899999999999999999986
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.011 Score=50.25 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=21.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+||||+++.+++.+.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999884
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+....+
T Consensus 8 i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999986543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999987
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48899999999999999999987
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.067 Score=52.22 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=31.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+..
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 67899999976 5678888888888876555555677777654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0042 Score=52.02 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.013 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+|||+++..+++.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 38999999999999999999987
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.014 Score=47.31 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.6
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++.+.|.|++|+||||++..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 44589999999999999999998763
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.011 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999865
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.14 Score=43.05 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|++|+|||++++.+...
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4999999999999999998764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.014 Score=50.48 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999886
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.02 Score=56.44 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.....+...+. .+..++.||||||||+++..++..+.
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4666666666653 23589999999999999988887765
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.14 Score=48.13 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=26.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+++.|+||+|||+++..++....... +..++.++..
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE 238 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE 238 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 89999999999999999998764221 2345656554
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.032 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.+++.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999863
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.017 Score=55.11 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHH--HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 65 HQEEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 65 g~~~~~~~l~~~l--~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
..+++.+.+.+.. .......++|.|.+|+||||+++++++.+..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4566767777655 2223334899999999999999999999953
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=49.47 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++..+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.033 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 13 i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHHhCCC
Confidence 89999999999999999987543
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.019 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.013 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-.
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 99999999999999999987653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.021 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.12 Score=49.70 Aligned_cols=113 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEeCCCCCCHHHHHHH--HHHHhc-CCC---------------------------CCCCceEEeecCC---------Cc
Q 016800 85 MLFYGPPGTGKTTTALA--IAHQLF-GPE---------------------------LYKSRVLELNASD---------DR 125 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~--la~~l~-~~~---------------------------~~~~~~~~~~~~~---------~~ 125 (382)
++|.||+|+||||+++. ++.... +.. .....+..++... ..
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~ 121 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGF 121 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCSSH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhccc
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC------CHHHHHHHHHHHHhcCC-ceEEEEeecCcccc
Q 016800 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM------TEDAQNALRRTMETYSK-VTRFFFICNYISRI 198 (382)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l------~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l 198 (382)
+.......+....... +.++|+|||+-.+ .......++.++..... .+.+|+++.....+
T Consensus 122 ~l~~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 122 DLSALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHHHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred CHHHHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Q ss_pred --------chhhhcccceEE
Q 016800 199 --------IEPLASRCAKFR 210 (382)
Q Consensus 199 --------~~~l~sr~~~i~ 210 (382)
...+..|..++.
T Consensus 189 ~~~~~~~i~~~laD~vi~L~ 208 (525)
T 1tf7_A 189 GPIARYGVEEFVSDNVVILR 208 (525)
T ss_dssp SCSSTTSCHHHHCSEEEEEE
T ss_pred cccccccceeeeeeEEEEEE
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.011 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.|.|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3899999999999999999985
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.059 Score=43.77 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+...-+
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999998887643
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38899999999999999999876
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.083 Score=42.78 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.9
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
+...+++.|++|+|||++++.+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3335999999999999999999853
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0079 Score=48.63 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.015 Score=47.96 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+|||++++.+...-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 399999999999999999987643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.013 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+++.++..+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 48999999999999999999876
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.025 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.+...+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999988763
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.043 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|+||+|+|||++++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 48999999999999999988765
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.027 Score=46.65 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+|||++++.+....+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 389999999999999999987654
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.031 Score=44.74 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 17 i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0089 Score=49.83 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.++..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999998864
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.076 Score=47.40 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=17.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
++++.+|+|+|||..+...+..
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 6999999999999876655544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.093 Score=42.01 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|++|+|||++++.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999865
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.061 Score=53.91 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=17.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHH
Q 016800 83 PHMLFYGPPGTGKTTTALAIA 103 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la 103 (382)
.++++.||+|+|||+.+....
T Consensus 47 ~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHHH
Confidence 369999999999999984433
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.08 Score=43.23 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 39999999999999999998754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.019 Score=55.00 Aligned_cols=39 Identities=28% Similarity=0.260 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
...+...+.-.+..+. +++|.||+|+||||++++++..+
T Consensus 246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 3555666665666654 59999999999999999998876
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.034 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+...-.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.14 Score=49.86 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=30.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+..
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 67899999976 5677777788888876544445677776643
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.032 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.052 Score=44.24 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999998776543
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.25 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|.||+||||+++++...-
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8999999999999999998653
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.26 Score=46.26 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=27.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+++.|+||+|||+++..++...... +..++.+...
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 8999999999999999999877433 2355555544
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.066 Score=42.42 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997643
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.042 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||+++..+...-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.06 Score=52.72 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+..
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 551 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLN 551 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTT
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 66899999975 5677777777777766544455677777654
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.029 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 18 i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999987643
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.017 Score=48.58 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.+.|.|++|+||||+++.++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999987
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.11 Score=42.33 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 49999999999999999998754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.79 E-value=0.022 Score=47.00 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=4.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999988765
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.034 Score=45.35 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+++.|++|+|||+++..+...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 349999999999999999998754
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.021 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 88999999999999999998874
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.11 Score=54.02 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=30.2
Q ss_pred chhhhhcCCCCCCc--ccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHH
Q 016800 49 QPWVEKYRPKQVKD--VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 49 ~~~~~k~~p~~~~~--~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~ 104 (382)
.||.+...|..... +--.+...+.+..+. .++ ++++.+|+|+|||.++.....
T Consensus 69 ~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~-~g~--~vLV~apTGSGKTlva~lai~ 123 (1010)
T 2xgj_A 69 TPIAEHKRVNEARTYPFTLDPFQDTAISCID-RGE--SVLVSAHTSAGKTVVAEYAIA 123 (1010)
T ss_dssp CCGGGCCCSSCSCCCSSCCCHHHHHHHHHHH-HTC--EEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcccChhhHHhCCCCCCHHHHHHHHHHH-cCC--CEEEECCCCCChHHHHHHHHH
Confidence 45655554532111 112344444444433 332 699999999999998754433
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.068 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|+||+|+|||++++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.26 Score=44.30 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=26.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+++.|+||+|||+++..++..+... +..+..++..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlE 83 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLE 83 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCC
Confidence 8999999999999999999876432 2445555543
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.025 Score=50.12 Aligned_cols=23 Identities=39% Similarity=0.706 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 48999999999999999999876
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.13 Score=50.06 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=30.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||+- .+++.....+.+.+.+......+|+++.+..
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 56799999986 5677777778887776544445677776654
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.019 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=22.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.|.|++|+||||.++.+++.+..
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998743
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.02 Score=46.82 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+++.|++|+|||++++.+....+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 389999999999999999987643
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.021 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=8.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 11 i~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999987543
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.022 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+.|.|++|+||||.++.+++.+...
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999988543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=94.63 E-value=0.14 Score=50.19 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..|.+.+.||+|+||||++++++...
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 44569999999999999999998764
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.019 Score=46.09 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+||||++..+.+.
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 999999999999999999885
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.095 Score=53.77 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.2
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
++|+||.|+||||+.+.++-
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998843
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.021 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+-|.||.|+||||+++.++..+
T Consensus 28 igI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.035 Score=56.13 Aligned_cols=40 Identities=38% Similarity=0.559 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.+.....+...+.. +..++.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46666666665542 35899999999999999888887653
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.023 Score=47.95 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.|++|+||||.++.+++.+.
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999999874
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.60 E-value=0.079 Score=45.45 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.1
Q ss_pred cEEEeCCCCCCHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALA 101 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~ 101 (382)
++++.+|+|+|||..+..
T Consensus 62 ~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 599999999999976443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.012 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=14.8
Q ss_pred cEEEeCCCCCCHHHHHHHHH-HHh
Q 016800 84 HMLFYGPPGTGKTTTALAIA-HQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la-~~l 106 (382)
.+.|.||+|+||||+++.++ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 38899999999999999998 654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.58 E-value=0.026 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++.|++|+|||++++.+...-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.041 Score=50.07 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=23.4
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.+.+.|.|+||+||||++..++..+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334899999999999999999988743
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.042 Score=45.25 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|++|+|||++++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999998754
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.057 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||.|+||||+.+.++-..
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHhhh
Confidence 7899999999999999998654
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.016 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.092 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.||.|+||||+.+.++..
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 899999999999999988643
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.13 Score=50.52 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
.+..+.+..++.... ...+++|+.|.|||+++-.++..+.. . +.+.++.......+.+.... ...-..
T Consensus 178 ~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~------~-~~vtAP~~~a~~~l~~~~~~----~i~~~~ 245 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAG------R-AIVTAPAKASTDVLAQFAGE----KFRFIA 245 (671)
T ss_dssp HHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSS------C-EEEECSSCCSCHHHHHHHGG----GCCBCC
T ss_pred HHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHh------C-cEEECCCHHHHHHHHHHhhC----CeEEeC
Confidence 344455554444322 34899999999999999999988742 1 23445554455544433211 100000
Q ss_pred CCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHH
Q 016800 147 RRGG-YPCPPYKIIILDEADSMTEDAQNALRR 177 (382)
Q Consensus 147 ~~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~ 177 (382)
.... .......++||||+-.++......|+.
T Consensus 246 Pd~~~~~~~~~dlliVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 246 PDALLASDEQADWLVVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp HHHHHHSCCCCSEEEEETGGGSCHHHHHHHHT
T ss_pred chhhhhCcccCCEEEEEchhcCCHHHHHHHHh
Confidence 0000 001145799999999998775544443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.021 Score=50.10 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|+||+|+||||++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999997653
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=48.66 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=18.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.|++|+||||.++.+++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999874
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.032 Score=47.54 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.++..+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.041 Score=48.82 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=25.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++++||||+|||+++..++....... ....+++++..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E 67 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSE 67 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEecc
Confidence 79999999999999988887763210 12345555554
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.029 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.|++|+|||++++.+...-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 389999999999999999987543
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.025 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 78999999999999999998763
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.21 Score=47.50 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=61.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh-h---cCCCCC---CC------
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA-V---GSGQRR---GG------ 150 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~~~~~~---~~------ 150 (382)
+.++.-+.|+|||..+-+++..+..... ...++.+-+. .-..+|.+.+..+.... . .+.... ..
T Consensus 58 ~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~--~l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi~ 134 (500)
T 1z63_A 58 GICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPL--SVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIILT 134 (500)
T ss_dssp CEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECS--TTHHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEEE
T ss_pred CEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccH--HHHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEEe
Confidence 5889999999999998888777642221 1234444443 34677877777654210 0 000000 00
Q ss_pred ----------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 151 ----------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 151 ----------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
.....+.+||+||+|.+.... ....+.+.......++.+++++..
T Consensus 135 t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 135 TYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp EHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred eHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 012357899999999984321 123344444444556777776543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.039 Score=49.57 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||+|+||||+++.++..+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998763
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.026 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||+|+||||+++.++..+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 389999999999999999998763
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.029 Score=47.07 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|++|+||||+++.+++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999976
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.04 Score=55.81 Aligned_cols=38 Identities=37% Similarity=0.596 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.....+...+. .+..++.||||||||+++..+...+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 4566666665543 2358999999999999988777655
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.055 Score=45.32 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+.|.|++|+||||.++.+++.+...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999988543
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.067 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=17.7
Q ss_pred cEEEeCCCCCCHHHH-HHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTT-ALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~l-a~~la~~l 106 (382)
++++.||+|+|||.. +..+...+
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999986 44444443
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.023 Score=49.86 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+.|+|++|+||||+++.++.
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999994
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.025 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||+|+||||+++.++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.21 E-value=0.018 Score=48.34 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 18 i~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999985443
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.096 Score=52.78 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=30.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
.|.+++..+...+..+...+.++.||.|+|||.++...+-.
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 46667777776666666557999999999999887655443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.035 Score=50.65 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 71 ~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+.-.+..|. .++|.||+|+||||++++++..+
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 44444445544 59999999999999999998875
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.05 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++..+
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999876
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.03 Score=47.82 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|+|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999988754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.026 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+++.+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999987
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.027 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+|||+++..+++.+
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 7899999999999999999987
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.12 Score=55.31 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.+.||+|+||||+++.+.+.+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 48999999999999999998865
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.031 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|++|+||||+++.+....
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998764
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.032 Score=49.55 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||.|+||||+++.++..+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998863
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.029 Score=47.83 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+++++.+... ...+|++|.+..
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 67799999965 5677888888888776432 345677777654
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.058 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=18.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.||+|+|||.++...+...
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~ 223 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQS 223 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHH
Confidence 59999999999998875554443
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.03 Score=47.88 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=29.2
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+... ...+|+++.+..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 67799999975 5688888888888766421 344666776543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.029 Score=45.92 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.|++|+||||+++.+.....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999988653
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.02 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|+||+|+||||+++.+++.+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999999999876
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.55 Score=43.57 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.|++|+||||++..++..+.
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78889999999999999999874
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.017 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+.|.|++|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3478999999999999999999873
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.034 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+|+||.|+|||+++.++.-.+.
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999999988764
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.033 Score=46.73 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+.|.|++|+||||.++.+++.+.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999984
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.035 Score=44.15 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.+.|++|+|||++++.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.024 Score=47.91 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=29.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 154 ~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
.+++++++||.- .+.+.....+.+++.+.. ....+|+++.+..
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 201 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 367799999975 567788888877776542 2445666766543
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.093 Score=43.29 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+.|.|+.|+||||.++.+++.+...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999988543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.03 Score=45.47 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
++|.|++|+|||++++.++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999876
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.09 Score=52.74 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.3
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTA-LAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la-~~la~~l 106 (382)
.++++.||+|+|||..+ ..+.+.+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 36999999999999887 3444333
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.048 Score=43.68 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
...+++.|++|+|||++++.+...-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3459999999999999999997643
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.033 Score=53.71 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHH--cCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 67 EEVVRVLTNTLE--TANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 67 ~~~~~~l~~~l~--~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++.+.+..... ..+...+.|.|++|+||||+++.++..+.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 455555554331 12222489999999999999999999874
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.79 E-value=0.03 Score=46.97 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.029 Score=47.88 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHH---hcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTME---TYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~~~ 197 (382)
+++++++||.- .+.+.....+.+.+. +......+|+++.....
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 56799999975 578888888888883 22234457777766543
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.043 Score=46.40 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+-|.|+||+||||.++.+++.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999873
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.08 Score=51.10 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHHH--cCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 65 HQEEVVRVLTNTLE--TANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 65 g~~~~~~~l~~~l~--~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
..+++.+.+..... ......++|+|++|+||||+++.+++.+.
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 44666666666652 22222389999999999999999999874
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=93.69 E-value=0.25 Score=48.61 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcC
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYS 183 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~ 183 (382)
+.++|||||++.++......+..+++..+
T Consensus 318 ~l~~lVlDEAH~l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 318 AYDIIICDECHSTDSTTILGIGTVLDQAE 346 (666)
T ss_dssp SCSEEEETTTTCCSHHHHHHHHHHHHHTT
T ss_pred cccEEEEccchhcCccHHHHHHHHHHhhh
Confidence 57899999999888776555655665443
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.67 E-value=0.016 Score=50.30 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.|++|+||||+++.+++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 48999999999999999999886
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.041 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+||||+++.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999874
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.041 Score=43.89 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++.|++|+|||++++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3899999999999999998754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.23 Score=53.30 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=30.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+.+|+|+||+- .+..+....+.+.+++......+|+++.....
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsT 1278 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNT 1278 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSST
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Confidence 56899999986 45666677778888776555556777765443
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.088 Score=47.73 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.|+||+||||+.+.+...+
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999865
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.61 Score=44.76 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=18.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.+|+|+|||..+...+...
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHHHHH
Confidence 59999999999998876655443
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.048 Score=45.36 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.|+.|+||||.++.+++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999883
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.039 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.||+|+||||+++.++...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999876
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.85 Score=40.31 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++.+.+...
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999987654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.034 Score=48.29 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.34 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=18.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++++.+|+|+|||..+...+...
T Consensus 21 ~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 21 NTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHH
Confidence 69999999999998866665443
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.041 Score=47.38 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=30.9
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++.+..
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 56799999975 578888888888887753 3445677776654
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.44 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+++.++|+|||.++..+++.+
T Consensus 302 ~gli~~~TGSGKT~t~~~l~~ll 324 (1038)
T 2w00_A 302 GGYIWHTTGSGKTLTSFKAARLA 324 (1038)
T ss_dssp SEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHHHHHH
Confidence 48999999999999987777554
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.035 Score=48.53 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=30.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~ 197 (382)
+++++|+||.- .+.+.....+.+++.+.. ....+|+++.+...
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 67899999975 578888888888876543 13456777766543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.046 Score=49.65 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|.||.|+||||+++.++..+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 78999999999999999998873
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=93.46 E-value=0.043 Score=47.75 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=31.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC-ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+... ...+|+++.+..
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 56799999976 5788889999999987532 445677776544
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.32 Score=47.72 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=17.3
Q ss_pred cEEEeCCCCCCHHHH-HHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTT-ALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~l-a~~la~~l 106 (382)
++++.+|+|+|||.. +..+...+
T Consensus 188 dvlv~a~TGSGKT~~~~lpil~~l 211 (618)
T 2whx_A 188 LTIMDLHPGAGKTKRILPSIVREA 211 (618)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 599999999999986 34444443
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.037 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998764
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.29 Score=45.68 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.3
Q ss_pred cEEEeCCCCCCHHHHH
Q 016800 84 HMLFYGPPGTGKTTTA 99 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la 99 (382)
++++.+|+|+|||...
T Consensus 95 d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 95 DLMACAQTGSGKTAAF 110 (434)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred CEEEECCCCCCchHHH
Confidence 5999999999999854
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.037 Score=47.90 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=30.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~ 197 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++.+...
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 67899999965 578888888888876542 24456777766543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.3 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||.|+||||+.+.++-..
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 8999999999999999988653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.037 Score=47.54 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+......+|+++....
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~ 205 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 66899999975 5677888888877766533455677776654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.038 Score=47.29 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=28.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~ 195 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 67899999975 567888888887776542 234466677654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=93.36 E-value=0.039 Score=46.83 Aligned_cols=42 Identities=5% Similarity=0.044 Sum_probs=29.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHH-HHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRT-METYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~-le~~~~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+. +.+......+|+++....
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 67899999975 5788888888886 444333445677776543
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.038 Score=47.92 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=27.9
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~ 195 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++.+.
T Consensus 177 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 177 EPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 67799999965 567777777777776542 234566666654
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.049 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|.||+||||+++.+++.+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999873
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.04 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48899999999999999998765
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=93.27 E-value=0.04 Score=47.37 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999988754
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.71 Score=43.99 Aligned_cols=36 Identities=14% Similarity=-0.093 Sum_probs=27.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
++|.|+||+|||+++..++..+.... ...++.++..
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E 280 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLE 280 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESS
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEecc
Confidence 89999999999999999998875431 2345555554
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.041 Score=47.85 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=29.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+..+..+.+++.+.. ....+|+++.+..
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 67899999975 567888888888876643 2345677776543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.052 Score=43.98 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+|||++++.+...
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999863
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.042 Score=47.46 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=29.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+.+++.+.. ....+|+++....
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 67899999975 678888888888776542 2445667776543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=93.17 E-value=0.029 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 48999999999999999998643
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.33 Score=45.60 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=16.3
Q ss_pred cEEEeCCCCCCHHHH-HHHHHHH
Q 016800 84 HMLFYGPPGTGKTTT-ALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~l-a~~la~~ 105 (382)
.+++.||+|+|||.. +..+...
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l~~ 43 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVRE 43 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHHH
T ss_pred eEEEECCCCCCHhhHHHHHHHHH
Confidence 469999999999983 4444433
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.042 Score=47.92 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=31.7
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.......+.+++.+... ...+|+++....
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 67899999975 5788888899999987643 455777776644
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.15 Score=47.29 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999998743
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.042 Score=47.58 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=31.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+++++++||.- .+.+.....+.+.+.+......+|+++.....
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 56799999975 56788888888888765444557777776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 382 | ||||
| d1sxjd2 | 237 | c.37.1.20 (D:26-262) Replication factor C2 {Baker' | 2e-51 | |
| d1iqpa2 | 231 | c.37.1.20 (A:2-232) Replication factor C {Archaeon | 3e-51 | |
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 3e-51 | |
| d1sxjb2 | 224 | c.37.1.20 (B:7-230) Replication factor C4 {Baker's | 3e-45 | |
| d1sxjc2 | 227 | c.37.1.20 (C:12-238) Replication factor C3 {Baker' | 9e-40 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 2e-34 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 3e-34 | |
| d2gnoa2 | 198 | c.37.1.20 (A:11-208) gamma subunit of DNA polymera | 4e-32 | |
| d1sxjd1 | 91 | a.80.1.1 (D:263-353) Replication factor C2 {Baker' | 5e-26 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 5e-25 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 9e-25 | |
| d1a5ta2 | 207 | c.37.1.20 (A:1-207) delta prime subunit of DNA pol | 3e-23 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 4e-21 | |
| d1sxjc1 | 95 | a.80.1.1 (C:239-333) Replication factor C3 {Baker' | 4e-20 | |
| d1iqpa1 | 95 | a.80.1.1 (A:233-327) Replication factor C {Archaeo | 1e-15 | |
| d1sxjb1 | 92 | a.80.1.1 (B:231-322) Replication factor C4 {Baker' | 3e-15 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 1e-13 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 1e-12 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 1e-06 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 2e-05 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 2e-05 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 5e-05 | |
| d1qvra3 | 315 | c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus | 6e-05 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 1e-04 | |
| d1tuea_ | 205 | c.37.1.20 (A:) Replication protein E1 helicase dom | 3e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 5e-04 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 0.002 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 0.002 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 0.003 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 0.003 |
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 169 bits (429), Expect = 2e-51
Identities = 135/237 (56%), Positives = 168/237 (70%), Gaps = 7/237 (2%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRPK + +V Q+ V VL TL++AN PHMLFYGPPGTGKT+T LA+ +L+GP
Sbjct: 1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 60
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--GYPCPPYKIIILDEADSM 167
+L KSR+LELNASD+RGI++VR K+K FA + V + YPCPPYKIIILDEADSM
Sbjct: 61 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 120
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T DAQ+ALRRTMETYS VTRF ICNY++RII+PLAS+C+KFRFK L R+ I
Sbjct: 121 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFIS 180
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGV 279
+E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV
Sbjct: 181 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 237
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 169 bits (428), Expect = 3e-51
Identities = 114/230 (49%), Positives = 154/230 (66%), Gaps = 10/230 (4%)
Query: 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107
+PWVEKYRP+++ D+ QE +V+ L + ++T + PH+LF GPPG GKTT ALA+A +LF
Sbjct: 11 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 70
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
E ++ LELNASD+RGINV+R K+K FA G +KII LDEAD++
Sbjct: 71 -GENWRHNFLELNASDERGINVIREKVKEFARTKPIGGAS--------FKIIFLDEADAL 121
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC 227
T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL +E ++ R+ +I
Sbjct: 122 TQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 181
Query: 228 NEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277
EGL L E L + I++GD+RRAI LQ AA L IT +++ V+
Sbjct: 182 ENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVA 230
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 169 bits (428), Expect = 3e-51
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 29/245 (11%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL 111
K+RP+ DV QE V+ L N L H LF G G GKT+ A +A L
Sbjct: 4 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 63
Query: 112 YKSR------------------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153
+ ++E++A+ + R +
Sbjct: 64 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR-------- 115
Query: 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213
+K+ ++DE ++ + NAL +T+E + +F ++ + SRC +F K
Sbjct: 116 --FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKA 173
Query: 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDL 273
L E + ++ HI NEE + + AL L+ ++G LR A++ A ++++ +
Sbjct: 174 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 233
Query: 274 ISVSG 278
++ G
Sbjct: 234 SAMLG 238
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 153 bits (387), Expect = 3e-45
Identities = 101/229 (44%), Positives = 136/229 (59%), Gaps = 9/229 (3%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + D+ +E + L + N PHM+ G PG GKTT+ +AH+L G
Sbjct: 4 PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 63
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y VLELNASDDRGI+VVR +IK FA Q++ P +KI+ILDEADSMT
Sbjct: 64 S-YADGVLELNASDDRGIDVVRNQIKHFA-------QKKLHLPPGKHKIVILDEADSMTA 115
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQ ALRRTME YS TRF F CN ++IIEPL S+CA R+ LS+E + R+L I
Sbjct: 116 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL 175
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278
E + + L + ++GD+R+AI LQ G + + ++ +
Sbjct: 176 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHG-LVNADNVFKIVD 223
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 139 bits (349), Expect = 9e-40
Identities = 97/233 (41%), Positives = 136/233 (58%), Gaps = 13/233 (5%)
Query: 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
PWVEKYRP+ + +V Q EV+ + ++ PH+LFYGPPGTGKT+T +A+A +++G
Sbjct: 3 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 62
Query: 110 ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE 169
Y + VLELNASDDRGI+VVR +IK F +K+IILDEAD+MT
Sbjct: 63 N-YSNMVLELNASDDRGIDVVRNQIKDF--------ASTRQIFSKGFKLIILDEADAMTN 113
Query: 170 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229
AQNALRR +E Y+K TRF + NY ++ L S+C +FRF+PL +E + R+ ++
Sbjct: 114 AAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVH 173
Query: 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS----ITSKDLISVSG 278
E L L A L +S GD+RR + LQ + I+ + G
Sbjct: 174 EKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 226
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 125 bits (314), Expect = 2e-34
Identities = 76/249 (30%), Positives = 123/249 (49%), Gaps = 29/249 (11%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGP 109
WV+KYRPK + ++H EE+ L + + + PH+L YGP GTGK T +A+ +FGP
Sbjct: 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60
Query: 110 ELYKS-----------------------RVLELNASDDRGIN--VVRTKIKTFAAVAVGS 144
+Y+ LE+ SD + V++ +K A +
Sbjct: 61 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 120
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
Q YK +I++EA+S+T+DAQ ALRRTME YSK R +C+ +S II P+ S
Sbjct: 121 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 180
Query: 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARL 263
+C R S+ +S+ + + E + L+ + L ++ S G+LR ++ L+ A
Sbjct: 181 QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA-- 238
Query: 264 FGSSITSKD 272
+ + K
Sbjct: 239 LNNELALKS 247
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 125 bits (313), Expect = 3e-34
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 30/259 (11%)
Query: 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-----------------TANCPHMLFYGPP 91
+ W KY P ++ V + V L N L + + YGPP
Sbjct: 2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 61
Query: 92 GTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151
G GKTT A +A +L L + NASD R ++ +K G +
Sbjct: 62 GIGKTTAAHLVAQELGYDILEQ------NASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 115
Query: 152 PCPP----YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII--EPLASR 205
+ +II+DE D M+ + + + + K + + + P
Sbjct: 116 EAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRV 175
Query: 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265
C +F+ + SR++ I E LD + L ++GD+R+ I L
Sbjct: 176 CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS-TISTTT 234
Query: 266 SSITSKDLISVSGVIPPEV 284
+I +++ +S +
Sbjct: 235 KTINHENINEISKAWEKNI 253
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Score = 117 bits (295), Expect = 4e-32
Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 19/202 (9%)
Query: 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-SDDRGIN 128
+ L +E + +L G + +L + + S VLE++ ++ GI+
Sbjct: 3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID 62
Query: 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188
+R IK F + K +I+ + + MT+ A NA + +E +
Sbjct: 63 DIR-TIKDFLNYSPELYT---------RKYVIVHDCERMTQQAANAFLKALEEPPEYAVI 112
Query: 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHI-------CNEEGLNLDAEALST 241
++ + SR + E + E EA
Sbjct: 113 VLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKL 172
Query: 242 LSSISQGDLRRAITYLQGAARL 263
+ G L ++ L+ L
Sbjct: 173 GAEKLSG-LMESLKVLETEKLL 193
|
| >d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 91 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 97.9 bits (244), Expect = 5e-26
Identities = 22/90 (24%), Positives = 48/90 (53%)
Query: 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
+P +++ + +SGDFD K VN + G+ A+ +++QL + + ++ + +I
Sbjct: 1 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 60
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
L D L +G +E++QLL++ + +
Sbjct: 61 SWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 90
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 99.7 bits (247), Expect = 5e-25
Identities = 40/219 (18%), Positives = 73/219 (33%), Gaps = 14/219 (6%)
Query: 53 EKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLF 107
+ RPK + + QE V + L+ LE A H+L GPPG GKTT A IA +L
Sbjct: 1 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 60
Query: 108 GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM 167
S + + D I + + + Y I + D M
Sbjct: 61 TNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAV--EELLYSAIEDFQIDIM 118
Query: 168 TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR---FKPLSEEVMSSRVL 224
+A +++ + F + + R + + + +
Sbjct: 119 IGKGPSA--KSIRIDIQ--PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIK 174
Query: 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+ + ++ A ++ S+G R AI + +
Sbjct: 175 RAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 213
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 99.3 bits (246), Expect = 9e-25
Identities = 46/232 (19%), Positives = 75/232 (32%), Gaps = 45/232 (19%)
Query: 56 RPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110
RPK + + QE + + L LE A H+L +GPPG GKTT A IAH+L
Sbjct: 4 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--- 60
Query: 111 LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED 170
+ L + I A I+ +DE ++
Sbjct: 61 ------VNLRVTSGPAIEKPGDLAAILAN------------SLEEGDILFIDEIHRLSRQ 102
Query: 171 AQNALRRTMETY----------------SKVTRFFFICNYISRIIEPLASR---CAKFRF 211
A+ L ME + ++ RF I +
Sbjct: 103 AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 162
Query: 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263
+ + E ++ V+ G+ + EA + S+G +R A +
Sbjct: 163 EYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDF 214
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 94.4 bits (233), Expect = 3e-23
Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 17/206 (8%)
Query: 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124
L + + H +L PG G A++ L + +
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 125 RGINVVRTKIKTFAAVAVGSGQR-----------RGGYPCPPYKIIILDEADSMTEDAQN 173
T A + K++ + +A +T+ A N
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 174 ALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233
AL +T+E T FF R++ L SRC P E+ + + +
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SREVT 181
Query: 234 LDAEALSTLSSISQGDLRRAITYLQG 259
+ +AL +S G A+ QG
Sbjct: 182 MSQDALLAALRLSAGSPGAALALFQG 207
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 91.3 bits (226), Expect = 4e-21
Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 22/203 (10%)
Query: 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-- 140
+ LF GP +GKTT A A+ G L +N DR + I F V
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGK------ALNVNLPLDRLNFELGVAIDQFLVVFE 208
Query: 141 -AVGSGQRRGGYPCPPYKIIILDEADSMTED------AQNALRRTMETYSKVTRFFFICN 193
G+G P ++ D++ + + + N
Sbjct: 209 DVKGTGGESRDLPS----GQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMN 264
Query: 194 -YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS-ISQGDLR 251
Y + R + + + L L +
Sbjct: 265 EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFA 324
Query: 252 RAITYLQG-AARLFGSSITSKDL 273
++I +
Sbjct: 325 QSIQSRIVEWKERLDKEFSLSVY 347
|
| >d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.1 bits (203), Expect = 4e-20
Identities = 14/94 (14%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARI 339
P ++ + D+ A+ +N + + G L+ + ++ + E ++E + +
Sbjct: 2 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHL 61
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIRAVCN 373
LA+++ + G ++ +Q V + + N
Sbjct: 62 LTKLADIEYSISKGGNDQIQGSAVIGAIKASFEN 95
|
| >d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 69.4 bits (170), Expect = 1e-15
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAE-GYPASLLLSQLFDVVVETEDISDEQQARI 339
PE + + + G+F A +++ I+ + G +L Q+ V I + ++ +
Sbjct: 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-PIEEPKKVLL 61
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNV 367
+ E + LV+GA+E +QL + +
Sbjct: 62 ADKIGEYNFRLVEGANEIIQLEALLAQF 89
|
| >d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.3 bits (167), Expect = 3e-15
Identities = 12/90 (13%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 281 PPEVVEGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQLFDVVVETEDISDEQQARI 339
P +V+ + + + + + + + + +GY + +++ F V + + + +
Sbjct: 2 HPLIVK---KMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEM 58
Query: 340 CKCLAEVDKCLVDGADEYLQLLDVASNVIR 369
K + +++G YLQL + + + +
Sbjct: 59 IKEIGLTHMRILEGVGTYLQLASMLAKIHK 88
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 68.6 bits (166), Expect = 1e-13
Identities = 32/279 (11%), Positives = 71/279 (25%), Gaps = 49/279 (17%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTLETANCP-----HMLFYGPPGTGKTT 97
+ + + + E Y P +++ + E + R+ N L + G G GKTT
Sbjct: 2 LFKDRRVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTT 61
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP----- 152
A ++ + ++ + + T + Q RG
Sbjct: 62 LAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILK 121
Query: 153 --------------CPPYKIIILDEADSMTEDAQNALRRTMETYSK------------VT 186
+ + + + + L R E +
Sbjct: 122 ALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVAS 181
Query: 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN--LDAEAL----- 239
+ +I + + K + + + + + L
Sbjct: 182 DVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 241
Query: 240 -STLSSISQGDLRRAITYLQGAARLF----GSSITSKDL 273
G RRAI L+ A + S++ +
Sbjct: 242 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 280
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 65.2 bits (157), Expect = 1e-12
Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 37/254 (14%)
Query: 44 VLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTT 97
++ + Y PK++ H+E+ ++ L L + P G PGTGKT
Sbjct: 2 IVVDDSVFSPSYVPKRLP---HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTV 58
Query: 98 TALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY------ 151
T + + + + + R
Sbjct: 59 TLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH 118
Query: 152 --PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209
Y ++LD+A ++ D + R + K+ F + L +
Sbjct: 119 LRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPST 178
Query: 210 --RFKPLSEEVMSSRVLHICN----------------EEGLNLDAE--ALSTLSSISQGD 249
I + E+ L + A+ T ++GD
Sbjct: 179 RGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 238
Query: 250 LRRAITYLQGAARL 263
R AI L +A
Sbjct: 239 ARLAIDILYRSAYA 252
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 47.6 bits (112), Expect = 1e-06
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121
+ QE++ L T +L +G GTGK+T A+A L PE+ +++
Sbjct: 8 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL--PEIEAVEGCPVSS 65
Query: 122 SDDRGI 127
+ I
Sbjct: 66 PNVEMI 71
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 19/166 (11%), Positives = 43/166 (25%), Gaps = 15/166 (9%)
Query: 62 DVAHQEEVVRVLTNTLETANCPHM----LFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117
D + + L ++ L G PG+GKT+ AI + G +
Sbjct: 8 DKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV----- 62
Query: 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRR 177
++ + + ++ II + R
Sbjct: 63 -IDNDTFKQQHPNFDELV-KLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRT 120
Query: 178 TMETYSKVTR----FFFICNYISRIIEPLASRCAKFRFKPLSEEVM 219
T T + Y+ + + + R++ + +
Sbjct: 121 TDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDP 166
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 43.3 bits (102), Expect = 2e-05
Identities = 54/250 (21%), Positives = 84/250 (33%), Gaps = 53/250 (21%)
Query: 61 KDVAHQEEVVRVLTNTLETANCPH------------MLFYGPPGTGKTTTALAIAHQLFG 108
KDVA EE L +E P +L GPPG GKT A A+A +
Sbjct: 9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-- 66
Query: 109 PELYKSRVLELNASD--DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166
+ + + SD + + V +++ A + PC I+ +DE D+
Sbjct: 67 ----RVPFITASGSDFVEMFVGVGAARVRDLFETA------KRHAPC----IVFIDEIDA 112
Query: 167 M--------------TEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPL--ASRCAK 208
+ E N L M+ + K T + N + L R +
Sbjct: 113 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDR 172
Query: 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRRAITY-LQGAARL 263
+ ++L I + L+ L+ + G DL + AAR
Sbjct: 173 QIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 232
Query: 264 FGSSITSKDL 273
IT KDL
Sbjct: 233 GRRKITMKDL 242
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 42.1 bits (98), Expect = 5e-05
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 26/139 (18%)
Query: 56 RPKQVKD-----VAHQEEVVRVLTNT---------LETANCP-----HMLFYGPPGTGKT 96
P+++ + Q + R + L+ ++L GP G GKT
Sbjct: 4 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKT 63
Query: 97 TTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156
A +A P + + T +A + G
Sbjct: 64 EIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNG------ 117
Query: 157 KIIILDEADSMTEDAQNAL 175
I+ +DE D + + + +
Sbjct: 118 -IVFIDEIDKICKKGEYSG 135
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 42.0 bits (98), Expect = 6e-05
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 61 KDVAHQEEVVRVLTNTLETA----NCPH-----MLFYGPPGTGKTTTALAIAHQLFGPEL 111
K V Q+E +R + + + A P+ LF GP G GKT A +A LF E
Sbjct: 23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 82
Query: 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP-----PYKIIILDEADS 166
R+ + ++ + A G GG PY +I+ DE +
Sbjct: 83 AMIRIDMTEYMEKHAVS------RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEK 136
Query: 167 MTEDAQNALRRTMETY 182
D N L + ++
Sbjct: 137 AHPDVFNILLQILDDG 152
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (95), Expect = 1e-04
Identities = 47/259 (18%), Positives = 77/259 (29%), Gaps = 71/259 (27%)
Query: 61 KDVAHQEEVVRVLTNTLETANCPH------------MLFYGPPGTGKTTTALAIAHQLFG 108
DVA +E + +E P +L GPPGTGKT A AIA +
Sbjct: 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-- 69
Query: 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR---------RGGYPCPPYKII 159
+ F + VG G + PC II
Sbjct: 70 -----------------KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPC----II 108
Query: 160 ILDEADSM-------TEDAQNALRRT-------METYSKVTRFFFIC--NYISRIIEPLA 203
+DE D++ + +T M+ + I N +++P
Sbjct: 109 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-VLDPAL 167
Query: 204 SRCAKFRFK---PLSEEVMSSRVLHICN-----EEGLNLDAEALSTLSSISQGDLRRAIT 255
R +F + L + ++L + ++ A T S DL +
Sbjct: 168 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGT-PGFSGADLANLVN 226
Query: 256 Y-LQGAARLFGSSITSKDL 273
AAR ++ +
Sbjct: 227 EAALFAARGNKRVVSMVEF 245
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Score = 39.4 bits (92), Expect = 3e-04
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 20/75 (26%)
Query: 51 WVEKYRPKQVKDVAHQEEVVRVLT----------NTLET-------ANCPHMLFYGPPGT 93
W+ ++R ++ + +V+ L L++ NC ++F GP T
Sbjct: 8 WI-RFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKGTPKKNC--LVFCGPANT 64
Query: 94 GKTTTALAIAHQLFG 108
GK+ ++ H + G
Sbjct: 65 GKSYFGMSFIHFIQG 79
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 5e-04
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQL 106
H+ GPPG GKTT + L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVL 25
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 37.2 bits (85), Expect = 0.002
Identities = 20/183 (10%), Positives = 50/183 (27%), Gaps = 5/183 (2%)
Query: 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-SDDRGINVVRTKIKTFAAVAVG 143
+L GPP +GKT A IA + P + ++ S+ ++ +
Sbjct: 43 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS 102
Query: 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203
Y I ++ + A L + + + + E
Sbjct: 103 CVVVDDIERLLDYVPIGPRFSNLVL-QALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 161
Query: 204 SRC--AKFRFKPLSEEVMSSRVL-HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260
++ L + N + A +++ + ++ +
Sbjct: 162 LNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 221
Query: 261 ARL 263
++
Sbjct: 222 LQM 224
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 36.2 bits (82), Expect = 0.002
Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 5/138 (3%)
Query: 86 LFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144
L G PG+GK+T A + G + + + + + TK K +
Sbjct: 6 LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQF 65
Query: 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204
+ ++ ++ + + A + Y + +++
Sbjct: 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVK---- 121
Query: 205 RCAKFRFKPLSEEVMSSR 222
R +K K + +V+ S
Sbjct: 122 RNSKRGTKAVPIDVLRSM 139
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 36.6 bits (83), Expect = 0.003
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY 112
L+ P L G TGK++ ++L P +Y
Sbjct: 22 EKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIY 59
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 36.6 bits (84), Expect = 0.003
Identities = 10/128 (7%), Positives = 23/128 (17%), Gaps = 40/128 (31%)
Query: 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG 143
++ G +GKT A+ L + +
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEAL-----------------GGKDKYATVRFGEPLSGYNT 167
Query: 144 SGQRR-------GGYPCPPYKIIILDEADSM------------TEDAQNALRRTMETYSK 184
+I++D ++ L + +
Sbjct: 168 DFNVFVDDIARAMLQHR----VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAA 223
Query: 185 VTRFFFIC 192
I
Sbjct: 224 SRGCVVIA 231
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 100.0 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 100.0 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 100.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 100.0 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 100.0 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 100.0 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.97 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.97 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.97 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.96 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.93 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 99.85 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 99.83 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.82 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.78 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.76 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.72 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.71 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.67 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.59 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.59 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.58 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.57 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.56 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.53 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.51 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.5 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.48 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.24 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 99.23 | |
| d1sxjd1 | 91 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.03 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.03 | |
| d1sxjc1 | 95 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.01 | |
| d1iqpa1 | 95 | Replication factor C {Archaeon Pyrococcus furiosus | 98.98 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 98.93 | |
| d1sxjb1 | 92 | Replication factor C4 {Baker's yeast (Saccharomyce | 98.81 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 98.78 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.48 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 98.43 | |
| d1sxje1 | 99 | Replication factor C5 {Baker's yeast (Saccharomyce | 98.32 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.22 | |
| d1jr3a1 | 126 | gamma subunit {Escherichia coli [TaxId: 562]} | 98.2 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.19 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 98.14 | |
| d1jr3d1 | 127 | delta subunit {Escherichia coli [TaxId: 562]} | 98.1 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 98.01 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.9 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.84 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 97.77 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.74 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.67 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.66 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.65 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.64 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.63 | |
| d1jqlb_ | 140 | delta subunit of DNA polymerase III, N-domain {Esc | 97.61 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.6 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.6 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.59 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.58 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.54 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.52 | |
| d3ctda1 | 163 | Uncharacterized protein YrvN {Prochlorococcus mari | 97.5 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.48 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.47 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.47 | |
| d2qw6a1 | 88 | Uncharacterized protein EfaeDRAFT_0938 {Enterococc | 97.47 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.45 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.45 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.42 | |
| d3bgea1 | 184 | Uncharacterized protein NTHI1458 {Haemophilus infl | 97.36 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.35 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.33 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.33 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.31 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.28 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.27 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.27 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.26 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.25 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.24 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.23 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.16 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.12 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.11 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.11 | |
| d2r9ga1 | 186 | Uncharacterized protein EfaeDRAFT_0938 {Enterococc | 97.1 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 97.07 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.06 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.98 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.94 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.93 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 96.89 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 96.89 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.88 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 96.86 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 96.86 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 96.85 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.83 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 96.82 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.81 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.76 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.75 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.75 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.74 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.72 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.7 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 96.68 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.67 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 96.65 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.63 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 96.63 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 96.62 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 96.61 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 96.61 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.59 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 96.55 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.51 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.5 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.49 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 96.48 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 96.46 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 96.43 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.41 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 96.37 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.34 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 96.34 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.34 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.33 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.32 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.28 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.28 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.26 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 96.25 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.24 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 96.2 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.19 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 96.17 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 96.13 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 96.13 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.13 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 96.12 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.1 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.07 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.07 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.05 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.03 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.01 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.99 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.92 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.92 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.9 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.9 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.87 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.85 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.85 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.81 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.79 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.75 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.69 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.68 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.68 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.64 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.64 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.63 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.62 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.61 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 95.6 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.58 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.58 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.57 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.55 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 95.52 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.51 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.5 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.49 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 95.47 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.43 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 95.42 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.41 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.39 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.35 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 95.33 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.3 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.3 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.25 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.19 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.12 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 95.06 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.03 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.01 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.96 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.86 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.86 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.8 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.8 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.78 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.76 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.69 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.66 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.65 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.61 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.58 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.53 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 94.52 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.45 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.39 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.14 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.12 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 94.06 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 94.06 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.98 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.85 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.76 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 93.74 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.73 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 93.73 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 93.72 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.72 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.56 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 93.52 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.5 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.5 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.47 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.32 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.29 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.24 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.13 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 93.12 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 93.09 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.05 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 92.97 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 92.89 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 92.88 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 92.82 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.75 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.69 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 92.66 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 92.49 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.48 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.43 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.41 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.34 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 92.23 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.22 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.22 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 92.22 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.21 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.03 | |
| d1a5ta1 | 123 | delta prime subunit {Escherichia coli [TaxId: 562] | 91.93 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 91.91 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.8 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 91.78 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.77 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 91.65 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.64 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.19 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.15 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.02 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.99 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 90.66 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.55 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.28 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.19 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.16 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 89.5 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 89.5 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 89.32 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 89.24 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 89.15 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.99 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 88.4 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.28 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 86.55 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 86.43 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 85.91 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 85.88 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.73 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.63 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 85.03 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.28 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 84.07 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 84.06 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.89 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.71 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 82.97 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 82.63 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.2 | |
| d1tafb_ | 70 | TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta | 80.2 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.12 |
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-39 Score=281.70 Aligned_cols=222 Identities=44% Similarity=0.700 Sum_probs=197.7
Q ss_pred CchhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcch
Q 016800 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (382)
Q Consensus 48 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (382)
..||++||||++|+|++||+++++.|..|++++..||+||+||||+|||++|+.+++++.+... ...+.++++.+..+.
T Consensus 2 ~~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~-~~~~~~~n~~~~~~~ 80 (224)
T d1sxjb2 2 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-ADGVLELNASDDRGI 80 (224)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-HHHEEEECTTSCCSH
T ss_pred CCchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhcccc-ccccccccccccCCc
Confidence 3689999999999999999999999999999999999999999999999999999999865432 346788999998888
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
..+...+..+....... ...+++++|+||+|.++..+++.|+..+++++..+.|+++++...++.++|+|||.
T Consensus 81 ~~i~~~~~~~~~~~~~~-------~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~ 153 (224)
T d1sxjb2 81 DVVRNQIKHFAQKKLHL-------PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 153 (224)
T ss_dssp HHHHTHHHHHHHBCCCC-------CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred eehhhHHHHHHHhhccC-------CCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHH
Confidence 88877777665443221 12367899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhhC
Q 016800 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSG 278 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~~ 278 (382)
.++|++|+.+++..+|.++++++++.+++++++.|+..++||+|.|++.||..... .+.|+.+.|.++++
T Consensus 154 ~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~-~~~i~~~~i~~~~d 223 (224)
T d1sxjb2 154 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-HGLVNADNVFKIVD 223 (224)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HSSBCHHHHHHHHT
T ss_pred HhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHc-CCCcCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999987654 46788888877653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-39 Score=281.18 Aligned_cols=218 Identities=25% Similarity=0.390 Sum_probs=193.4
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-----------------
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY----------------- 112 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~----------------- 112 (382)
+.+||||.+|+|++||+++++.|..++.+++.|| +||+||||+|||++|+.+++.+.+....
T Consensus 2 ~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 81 (239)
T d1njfa_ 2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 81 (239)
T ss_dssp HHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHT
T ss_pred chhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcC
Confidence 5789999999999999999999999999999999 8999999999999999999998765321
Q ss_pred -CCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 016800 113 -KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
...+++++..+..+++.+++.++.+..... .++++++||||+|.|+.+++++|++.||+++.++.||++
T Consensus 82 ~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~----------~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~ 151 (239)
T d1njfa_ 82 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPA----------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 151 (239)
T ss_dssp CCTTEEEEETTCSSSHHHHHHHHHSCCCSCS----------SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE
T ss_pred CCCeEEEecchhcCCHHHHHHHHHHHHhccc----------cCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 124678888877788888775554322111 127789999999999999999999999999999999999
Q ss_pred ecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChh
Q 016800 192 CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSK 271 (382)
Q Consensus 192 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~ 271 (382)
||+..++.++|+|||..+.|++++.+++..++.+++..+++.+++++++.|+..++||+|.|++.++.+.....++|+.+
T Consensus 152 tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~~~~I~~~ 231 (239)
T d1njfa_ 152 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQ 231 (239)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTTSBCHH
T ss_pred cCCccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776666889999
Q ss_pred hHhhhhC
Q 016800 272 DLISVSG 278 (382)
Q Consensus 272 ~v~~~~~ 278 (382)
+|.++++
T Consensus 232 ~v~~~lg 238 (239)
T d1njfa_ 232 AVSAMLG 238 (239)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9988775
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-39 Score=278.49 Aligned_cols=221 Identities=44% Similarity=0.764 Sum_probs=194.3
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
.||++||||++|+|++||+++++.|..|+.++..||+||+||||+|||++++++++++.+... ...+.+.+.++..+++
T Consensus 2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~-~~~~~e~~~~~~~~~~ 80 (227)
T d1sxjc2 2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRGID 80 (227)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCSHH
T ss_pred CchhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCC-cceeEEecccccCCee
Confidence 599999999999999999999999999999999999999999999999999999999876543 2356778888877777
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccce
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 208 (382)
............... ...+++++||||+|.++...++.|++.+++++..+.|+++++...++.+++++||..
T Consensus 81 ~~~~~~~~~~~~~~~--------~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~ 152 (227)
T d1sxjc2 81 VVRNQIKDFASTRQI--------FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 152 (227)
T ss_dssp HHHTHHHHHHHBCCS--------SSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred eeecchhhccccccc--------cCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhh
Confidence 665555544332211 122678999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
+.|++++.+++..+|.++++.+++.+++++++.|++.++||+|.|++.||.+.... ...||.++|.++++
T Consensus 153 i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~~~~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 153 FRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 226 (227)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred hccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCCeeCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999876554 36789999988775
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.8e-38 Score=273.76 Aligned_cols=229 Identities=59% Similarity=0.976 Sum_probs=196.6
Q ss_pred hhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 50 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
||++||+|.+|+|++||+++++.|..+++.++.||++|+||||+|||++++++++++.+.........+++.....+...
T Consensus 1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (237)
T d1sxjd2 1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI 80 (237)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH
T ss_pred CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchH
Confidence 89999999999999999999999999999999999999999999999999999999866555556677888877777766
Q ss_pred HHHHHHHHHHhhhcCCCC--CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 130 VRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~--~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
....+..+.......... ...+....++++||||+|.++.+.++.+++.++.++..+.||++++...+++++++|||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~ 160 (237)
T d1sxjd2 81 VREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 160 (237)
T ss_dssp HTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhh
Confidence 665555554332221110 011123467899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-----CCCCChhhHhhhhC
Q 016800 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSG 278 (382)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-----~~~It~~~v~~~~~ 278 (382)
.+.|++++.+++..+|..++.++++.+++++++.|++.++||+|.+++.||.++..+ +..||.++|+++++
T Consensus 161 ~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~~~~~~~~~~It~~~i~e~~g 236 (237)
T d1sxjd2 161 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 236 (237)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred hhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhcCCCCccCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999876543 46799999988765
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.2e-37 Score=268.46 Aligned_cols=219 Identities=52% Similarity=0.870 Sum_probs=192.6
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchH
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
.||++||+|.+|+|++|++++++.|..|++.++.||+||+||||+|||++|+++++++.+... ...++++++++..+..
T Consensus 12 ~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~-~~~~~e~n~s~~~~~~ 90 (231)
T d1iqpa2 12 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENW-RHNFLELNASDERGIN 90 (231)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH-HHHEEEEETTCHHHHH
T ss_pred chHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhccc-CCCeeEEecCcccchh
Confidence 789999999999999999999999999999999999999999999999999999999866432 3567889998876666
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccce
Q 016800 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (382)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 208 (382)
.++............. ...+.++++||++.++.+.++.|+++++++..++.+|+++|....+++++++||..
T Consensus 91 ~~~~~~~~~~~~~~~~--------~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~ 162 (231)
T d1iqpa2 91 VIREKVKEFARTKPIG--------GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 162 (231)
T ss_dssp TTHHHHHHHHHSCCGG--------GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HHHHHHHHHHhhhhcc--------CCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcccc
Confidence 6666555544332221 12678999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCChhhHhhhh
Q 016800 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVS 277 (382)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~~~It~~~v~~~~ 277 (382)
+.|++++..++..++.++++++++.+++++++.|++.++||+|.|++.||.++.. ++.||.++|.++.
T Consensus 163 i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~-~~~it~e~v~~v~ 230 (231)
T d1iqpa2 163 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVA 230 (231)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSEECHHHHHHHT
T ss_pred ccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCcCHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999987654 5678888876653
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-33 Score=243.78 Aligned_cols=213 Identities=35% Similarity=0.604 Sum_probs=162.7
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---------------
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS--------------- 114 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~--------------- 114 (382)
|++||+|.+|+|++|++++.+.|..++..+. .|++||+||||+|||++|+++++.+.++.....
T Consensus 1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (252)
T d1sxje2 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 80 (252)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchh
Confidence 9999999999999999999999999998775 456999999999999999999999865432111
Q ss_pred --------ceEEeecCCC--cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCC
Q 016800 115 --------RVLELNASDD--RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184 (382)
Q Consensus 115 --------~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~ 184 (382)
....+...+. .........+...................+..++++|||+|.++.+.++.|++.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~ 160 (252)
T d1sxje2 81 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 160 (252)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred hhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhcccccccc
Confidence 0111111111 111122222222221111000001111123678999999999999999999999999999
Q ss_pred ceEEEEeecCccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016800 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYLQGAARL 263 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~gdlr~a~~~l~~~~~~ 263 (382)
+++||++||..++++++++|||..++|++++.+++.+++..+++.+++.++ +++++.|+..++||+|.|++.||.++..
T Consensus 161 ~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~ 240 (252)
T d1sxje2 161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 240 (252)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHT
T ss_pred cccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999998764 6788999999999999999999987763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8e-31 Score=229.99 Aligned_cols=222 Identities=26% Similarity=0.421 Sum_probs=168.6
Q ss_pred chhhhhcCCCCCCcccCcHHHHHHHHHHHHc-----------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 016800 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (382)
Q Consensus 49 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~ 111 (382)
..|++||+|.+|+|++|+++.++.|..|+.. +..++++|+||||||||++|+++++++
T Consensus 2 ~lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~----- 76 (253)
T d1sxja2 2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----- 76 (253)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----
T ss_pred CccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHH-----
Confidence 4799999999999999999999999998854 234569999999999999999999998
Q ss_pred CCCceEEeecCCCcchHHHHHHHHHHHHhhhcCC----CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-CCce
Q 016800 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG----QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVT 186 (382)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~ 186 (382)
+..+.++++++......++..+..+........ ........+...++++||++.++...+..+..+++.. ....
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~ 155 (253)
T d1sxja2 77 -GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTST 155 (253)
T ss_dssp -TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSS
T ss_pred -HhhhhccccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhccccc
Confidence 356778888877665555443332221110000 0111122346789999999999887766666666531 2233
Q ss_pred EEEEeec-CccccchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 016800 187 RFFFICN-YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (382)
Q Consensus 187 ~~Il~~~-~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~~ 265 (382)
.++++++ ......+++++||..+.|++|+.+++..++..+++++|+.+++++++.|+..++||+|.+++.|+..... .
T Consensus 156 ~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~GDiR~ai~~L~~~~~~-~ 234 (253)
T d1sxja2 156 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT-T 234 (253)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHH-S
T ss_pred ccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C
Confidence 4555554 3445677899999999999999999999999999999999999999999999999999999999977664 5
Q ss_pred CCCChhhHhhhh
Q 016800 266 SSITSKDLISVS 277 (382)
Q Consensus 266 ~~It~~~v~~~~ 277 (382)
+.++.+.+.++.
T Consensus 235 ~~i~~~~~~~~~ 246 (253)
T d1sxja2 235 KTINHENINEIS 246 (253)
T ss_dssp SCCCTTHHHHHH
T ss_pred CCCCHHHHHHHh
Confidence 677777665443
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.2e-30 Score=218.14 Aligned_cols=179 Identities=21% Similarity=0.304 Sum_probs=150.7
Q ss_pred CcHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceEEeecC---
Q 016800 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS--- 122 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~------------------~~~~~~~~~~--- 122 (382)
.++++.+.|.+.+..++.|| +||+||+|+|||++|+.+++.++|.... ...+..+...
T Consensus 6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (207)
T d1a5ta2 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (207)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcc
Confidence 57889999999999999999 9999999999999999999999865421 1234444332
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhh
Q 016800 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPL 202 (382)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 202 (382)
....++.+++.+..+..... .++++|+||||+|.|+.+++++|+++||+|+.++.||++|++..+++++|
T Consensus 86 ~~i~~~~ir~l~~~~~~~~~----------~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI 155 (207)
T d1a5ta2 86 NTLGVDAVREVTEKLNEHAR----------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (207)
T ss_dssp SSBCHHHHHHHHHHTTSCCT----------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred cccccchhhHHhhhhhhccc----------cCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhh
Confidence 23456777776654332221 12789999999999999999999999999999999999999999999999
Q ss_pred hcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 016800 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (382)
Q Consensus 203 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~ 258 (382)
+|||+.+.|++++.+++..+|. +++.++++++..+++.++||+|.|+++||
T Consensus 156 ~SRc~~i~~~~~~~~~~~~~L~-----~~~~~~~~~~~~i~~~s~Gs~r~al~~le 206 (207)
T d1a5ta2 156 RSRCRLHYLAPPPEQYAVTWLS-----REVTMSQDALLAALRLSAGSPGAALALFQ 206 (207)
T ss_dssp HTTSEEEECCCCCHHHHHHHHH-----HHCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred cceeEEEecCCCCHHHHHHHHH-----HcCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 9999999999999999999984 35568999999999999999999999875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=1.4e-28 Score=213.55 Aligned_cols=201 Identities=19% Similarity=0.266 Sum_probs=167.4
Q ss_pred cCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 55 YRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
.||++|+|++||+++++.|..|+.. ...||+|||||||||||++|+++++++. ..+..+++.+......
T Consensus 3 ~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~------~~~~~~~~~~~~~~~~ 76 (238)
T d1in4a2 3 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ------TNIHVTSGPVLVKQGD 76 (238)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT------CCEEEEETTTCCSHHH
T ss_pred CCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccC------CCcccccCcccccHHH
Confidence 6899999999999999999988853 3467899999999999999999999983 4567788877666555
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------------------CCceEEEEe
Q 016800 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------------------SKVTRFFFI 191 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~------------------~~~~~~Il~ 191 (382)
+...+... ....++++||++.+++..++.++..++.. ..++.||++
T Consensus 77 ~~~~~~~~----------------~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~a 140 (238)
T d1in4a2 77 MAAILTSL----------------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA 140 (238)
T ss_dssp HHHHHHHC----------------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEE
T ss_pred HHHHHHhh----------------ccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEe
Confidence 54433221 14569999999999999999999888753 246789999
Q ss_pred ecCccccchhhhcccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CC
Q 016800 192 CNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GS 266 (382)
Q Consensus 192 ~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~----~~ 266 (382)
|+.+..+.+++++||. .+.|++++.+++..++..++..++..++++++..+++.++||+|.+++.++.+...+ ..
T Consensus 141 t~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai~~l~~~~~~~~~~~~~ 220 (238)
T d1in4a2 141 TTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKAD 220 (238)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999997 679999999999999999999999999999999999999999999999998765432 45
Q ss_pred CCChhhHhhhh
Q 016800 267 SITSKDLISVS 277 (382)
Q Consensus 267 ~It~~~v~~~~ 277 (382)
.||.+.+.+++
T Consensus 221 ~it~~~~~~al 231 (238)
T d1in4a2 221 RINTDIVLKTM 231 (238)
T ss_dssp SBCHHHHHHHH
T ss_pred ccCHHHHHHHH
Confidence 67777665543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=3.8e-27 Score=204.52 Aligned_cols=202 Identities=21% Similarity=0.248 Sum_probs=162.5
Q ss_pred cCCCCCCcccCcHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHH
Q 016800 55 YRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (382)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
.||++|+|++||+++++.|..++.. ...+|+|||||||||||++|+++++++. ..+..+++.+......
T Consensus 3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~------~~~~~~~~~~~~~~~~ 76 (239)
T d1ixsb2 3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGPAIEKPGD 76 (239)
T ss_dssp CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHT------CCEEEEETTTCCSHHH
T ss_pred cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCeEeccCCccccchh
Confidence 4899999999999999999988864 2467899999999999999999999983 4566777776554443
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc------------------CCceEEEEe
Q 016800 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------------------SKVTRFFFI 191 (382)
Q Consensus 130 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~------------------~~~~~~Il~ 191 (382)
....+.. .. ....++++||+|.+++..++.++..+++. .....||++
T Consensus 77 ~~~~~~~----~~-----------~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 141 (239)
T d1ixsb2 77 LAAILAN----SL-----------EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 141 (239)
T ss_dssp HHHHHHT----TC-----------CTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEE
T ss_pred hHHHHHh----hc-----------cCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEee
Confidence 3332222 11 14469999999999999999999999853 234557777
Q ss_pred ecCccc-cchhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc----CC
Q 016800 192 CNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GS 266 (382)
Q Consensus 192 ~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~----~~ 266 (382)
++.... ..+.++++|..+.|.+++.+++..++..++..+++.++++.++.++..++||+|.+++.|+.+..++ ..
T Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~~l~~~~~~a~~~~~~ 221 (239)
T d1ixsb2 142 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEE 221 (239)
T ss_dssp ESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHHHHHHHHHHHTTSCCS
T ss_pred ccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 766554 5577778888999999999999999999999999999999999999999999999999999877554 35
Q ss_pred CCChhhHhhhh
Q 016800 267 SITSKDLISVS 277 (382)
Q Consensus 267 ~It~~~v~~~~ 277 (382)
.||.+.+.+++
T Consensus 222 ~It~~~~~~~l 232 (239)
T d1ixsb2 222 VITRERALEAL 232 (239)
T ss_dssp CBCHHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 68877776554
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=1.4e-25 Score=187.19 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=118.4
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC-CcchHHHHHHHHHHHHhhhcCCCC
Q 016800 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAVGSGQR 147 (382)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 147 (382)
.++.+.++++.+..++++|+||+|+|||++|..+++.+......+.++.++.+.. ..+++++|+....+. .....
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~-~~~~~--- 77 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLN-YSPEL--- 77 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHT-SCCSS---
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHh-hCccc---
Confidence 4678889999998888999999999999999999998876666667888888754 457899998655543 32222
Q ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccchhhhcccceEEecCCCH
Q 016800 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSE 216 (382)
Q Consensus 148 ~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~ 216 (382)
+++||+||||+|.|+.+++|+|+++||+||.++.||++|+++.+++++|+|||+.+.|+++..
T Consensus 78 ------~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~~ 140 (198)
T d2gnoa2 78 ------YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 140 (198)
T ss_dssp ------SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred ------CCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCchH
Confidence 278999999999999999999999999999999999999999999999999999999987653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.7e-20 Score=161.58 Aligned_cols=203 Identities=23% Similarity=0.245 Sum_probs=136.4
Q ss_pred CCCCcccCcHHHHHHHHHHHH---------c-C-CCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 58 KQVKDVAHQEEVVRVLTNTLE---------T-A-NCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~---------~-~-~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
.+|+|++|.+++++.|.+.+. . | ..| ++||+||||||||++|+++++++ +..++.+++++..
T Consensus 6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~ 79 (247)
T d1ixza_ 6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFV 79 (247)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHH
T ss_pred CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHc------CCCEEEEEhHHhh
Confidence 389999999999988766541 1 2 223 39999999999999999999997 4567777765421
Q ss_pred c--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhcC--CceE
Q 016800 126 G--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS--KVTR 187 (382)
Q Consensus 126 ~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~--~~~~ 187 (382)
+ .......+.......... .+.||+|||+|.+.. ...+.|+..|+... ..+.
T Consensus 80 ~~~~g~~~~~l~~~f~~a~~~----------~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vi 149 (247)
T d1ixza_ 80 EMFVGVGAARVRDLFETAKRH----------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 149 (247)
T ss_dssp HSCTTHHHHHHHHHHHHHTTS----------SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEE
T ss_pred hccccHHHHHHHHHHHHHHHc----------CCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 1 111122233322222111 456999999987621 13466777887543 4556
Q ss_pred EEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHh
Q 016800 188 FFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAARL 263 (382)
Q Consensus 188 ~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~~~~~~ 263 (382)
+|.+||.++.+.+++++ |+. .++|++|+.++..++++..+...... .+..+..+++.+.| ..+.+.++++.++..
T Consensus 150 vi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~lv~~A~l~ 228 (247)
T d1ixza_ 150 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALL 228 (247)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 67789999999999984 786 89999999999999998887654432 33347788888766 233333333333322
Q ss_pred c----CCCCChhhHhhhh
Q 016800 264 F----GSSITSKDLISVS 277 (382)
Q Consensus 264 ~----~~~It~~~v~~~~ 277 (382)
+ ...|+.+++++++
T Consensus 229 a~~~~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 229 AAREGRRKITMKDLEEAA 246 (247)
T ss_dssp HHHTTCSSBCHHHHHHHT
T ss_pred HHHcCCCCcCHHHHHHhh
Confidence 2 4678888887764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.5e-19 Score=154.77 Aligned_cols=200 Identities=19% Similarity=0.172 Sum_probs=137.1
Q ss_pred CCCCCcccCcHHHHHHHHHHHH---c--------CCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCC
Q 016800 57 PKQVKDVAHQEEVVRVLTNTLE---T--------ANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (382)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~---~--------~~~~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (382)
..+|+|+.|.+.+++.+.+.+. . .+.| ++|||||||||||++|+++++++ +..++.+++++.
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~------~~~~~~i~~~~l 81 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSDF 81 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCSS
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHc------CCCEEEEEhHHh
Confidence 4589999999999988876542 1 1223 39999999999999999999998 456777777653
Q ss_pred cc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHHHhc--
Q 016800 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY-- 182 (382)
Q Consensus 125 ~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~-- 182 (382)
.+ ...++..+.... .. .+.||+|||+|.+.. ...+.|+..++..
T Consensus 82 ~~~~~g~~~~~l~~~f~~A~----~~----------~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~ 147 (256)
T d1lv7a_ 82 VEMFVGVGASRVRDMFEQAK----KA----------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 147 (256)
T ss_dssp TTSCCCCCHHHHHHHHHHHH----TT----------CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS
T ss_pred hhcchhHHHHHHHHHHHHHH----Hc----------CCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 22 233333333221 11 456999999987521 2346677778743
Q ss_pred CCceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 016800 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (382)
Q Consensus 183 ~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g-dlr~a~~~l~ 258 (382)
...+.+|.+||.++.+++++++ |+. .+.|++|+.++..++++....+.+.. .+..+..+++.+.| +.+.+.++++
T Consensus 148 ~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adi~~l~~ 226 (256)
T d1lv7a_ 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVN 226 (256)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHHHHHhCCCCCHHHHHHHHH
Confidence 3456778889999999999985 775 89999999999999998887655443 33456778887765 3444444554
Q ss_pred HHHHhc----CCCCChhhHhhhh
Q 016800 259 GAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 259 ~~~~~~----~~~It~~~v~~~~ 277 (382)
.+...+ ...|+.+++..++
T Consensus 227 ~A~~~a~~~~~~~i~~~d~~~Al 249 (256)
T d1lv7a_ 227 EAALFAARGNKRVVSMVEFEKAK 249 (256)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHcCCCccCHHHHHHHH
Confidence 443222 3457777766554
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.82 E-value=2.6e-18 Score=150.93 Aligned_cols=218 Identities=19% Similarity=0.238 Sum_probs=153.1
Q ss_pred cCCchhhhhcCCCCCCcccCcHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEe
Q 016800 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (382)
Q Consensus 46 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~ 119 (382)
....++...|+|. .++|++..++.+.+++.. ...++++|+||||||||++++.+++.+.+.. ...++.+
T Consensus 4 ~~~~~l~~~y~p~---~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~--~~~~~~~ 78 (276)
T d1fnna2 4 VDDSVFSPSYVPK---RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYI 78 (276)
T ss_dssp SCGGGGSTTCCCS---CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEE
T ss_pred cCcccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhccc--CCcEEEe
Confidence 3456788899995 468999888888877753 2334699999999999999999999985433 3455556
Q ss_pred ecCCCcchHHHHHHHH-------------------HHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 016800 120 NASDDRGINVVRTKIK-------------------TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (382)
Q Consensus 120 ~~~~~~~~~~~~~~l~-------------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le 180 (382)
++.............. .+...... .....++++|+++.+.....+.+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 149 (276)
T d1fnna2 79 NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE---------RDLYMFLVLDDAFNLAPDILSTFIRLGQ 149 (276)
T ss_dssp ETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH---------TTCCEEEEEETGGGSCHHHHHHHHHHTT
T ss_pred cchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhh---------cccccccchhHHHHhhhhhhhhHHHHHh
Confidence 5543322221111110 00000000 1155688899999998877766665554
Q ss_pred h----cCCceEEEEeecCc---cccchhhhcccc--eEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHhc---
Q 016800 181 T----YSKVTRFFFICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEG--LNLDAEALSTLSSIS--- 246 (382)
Q Consensus 181 ~----~~~~~~~Il~~~~~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~s--- 246 (382)
. ......+|++++.. +.+.+.+.+|+. .+.|++++.+++.+++.++++..+ ..+++++++.+++.+
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~ 229 (276)
T d1fnna2 150 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 229 (276)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred ccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhh
Confidence 2 23455677777653 457788888874 699999999999999999887643 348999999998753
Q ss_pred ------CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhh
Q 016800 247 ------QGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (382)
Q Consensus 247 ------~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~ 277 (382)
+||+|.++++++.+...+ ...|+.++|+++.
T Consensus 230 ~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~edv~~A~ 270 (276)
T d1fnna2 230 TPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSS 270 (276)
T ss_dssp STTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 799999999999876655 3579999988765
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.78 E-value=4.8e-18 Score=150.13 Aligned_cols=219 Identities=18% Similarity=0.185 Sum_probs=144.6
Q ss_pred ccCCchhhhhcCCCCCCcccCcHHHHHHHHHH----HHcCCCC-----cEEEeCCCCCCHHHHHHHHHHHhcCCC---CC
Q 016800 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNT----LETANCP-----HMLFYGPPGTGKTTTALAIAHQLFGPE---LY 112 (382)
Q Consensus 45 ~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~----l~~~~~~-----~lll~Gp~G~GKt~la~~la~~l~~~~---~~ 112 (382)
+....+|..+|+|.. ++|++..++.+.++ +..+..+ +++|+||||||||++++++++.+.... ..
T Consensus 3 ~~~~~~l~~~~~P~~---~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~ 79 (287)
T d1w5sa2 3 FKDRRVFDENYIPPE---LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGL 79 (287)
T ss_dssp BSCGGGGSTTCCCSS---CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccChhhcCCccCCCC---CCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccC
Confidence 345678999999954 45766666555544 3444333 267899999999999999999874321 11
Q ss_pred CCceEEeecCCCcchHHH----------------------HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCC---
Q 016800 113 KSRVLELNASDDRGINVV----------------------RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM--- 167 (382)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l--- 167 (382)
...+.++++......... ...+...... .+...++++||+|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~iide~d~l~~~ 147 (287)
T d1w5sa2 80 TVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV------------ENHYLLVILDEFQSMLSS 147 (287)
T ss_dssp CEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH------------HTCEEEEEEESTHHHHSC
T ss_pred CceeeeeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHh------------ccCccccceeEEEEeccc
Confidence 233444444332221111 1111111100 115678899998866
Q ss_pred ---CHHHHHHHHHHHHhcC-----CceEEEEeecCcc------ccchhhhcc-cceEEecCCCHHHHHHHHHHHHHHhC-
Q 016800 168 ---TEDAQNALRRTMETYS-----KVTRFFFICNYIS------RIIEPLASR-CAKFRFKPLSEEVMSSRVLHICNEEG- 231 (382)
Q Consensus 168 ---~~~~~~~Ll~~le~~~-----~~~~~Il~~~~~~------~l~~~l~sr-~~~i~~~~~~~~~~~~~l~~~~~~~~- 231 (382)
..+....+..+++... ....+|++++... ...+.+.+| +..+.|++++.+++.+++..+++...
T Consensus 148 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~ 227 (287)
T d1w5sa2 148 PRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR 227 (287)
T ss_dssp TTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC
T ss_pred cccchhHHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhc
Confidence 3455566666666432 3455666665443 233566666 45999999999999999999987643
Q ss_pred -CCCCHHHHHHHHHhc------CCCHHHHHHHHHHHHHhc----CCCCChhhHhhhhC
Q 016800 232 -LNLDAEALSTLSSIS------QGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (382)
Q Consensus 232 -~~~~~~~~~~l~~~s------~gdlr~a~~~l~~~~~~~----~~~It~~~v~~~~~ 278 (382)
..+++++++.+++.+ .||+|+++++|+.++..+ ...||.++|++++.
T Consensus 228 ~~~~~~~al~~ia~~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~ 285 (287)
T d1w5sa2 228 DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285 (287)
T ss_dssp TTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence 348999999999866 799999999999877555 47899999988764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=1.7e-17 Score=144.11 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=118.9
Q ss_pred CCCcccCcHHHHHHHHHHHHc-----------C-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc
Q 016800 59 QVKDVAHQEEVVRVLTNTLET-----------A-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (382)
+|+|+.|.+++++.+.+.+.. | ..|. +|||||||||||++++++++++ ...++.+++.+..
T Consensus 2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~------~~~~~~i~~~~l~ 75 (258)
T d1e32a2 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIM 75 (258)
T ss_dssp CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHT------TCEEEEECHHHHT
T ss_pred ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHh------CCeEEEEEchhhc
Confidence 689999999999888886521 2 2233 9999999999999999999997 4566666654311
Q ss_pred ------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHHHh--cCCce
Q 016800 126 ------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----------AQNALRRTMET--YSKVT 186 (382)
Q Consensus 126 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~Ll~~le~--~~~~~ 186 (382)
....++..+.. .... .+.||+|||+|.+... ..+.++..++. ....+
T Consensus 76 ~~~~g~~~~~l~~~f~~----A~~~----------~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (258)
T d1e32a2 76 SKLAGESESNLRKAFEE----AEKN----------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 141 (258)
T ss_dssp TSCTTHHHHHHHHHHHH----HHHT----------CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCE
T ss_pred ccccccHHHHHHHHHHH----HHhc----------CCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCc
Confidence 12223322222 1111 5579999999998532 23444444443 34556
Q ss_pred EEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 016800 187 RFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (382)
Q Consensus 187 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~g 248 (382)
.+|.+||.+..+++++++ |+. .++|++|+.++...+++..++..... ++..+..|++.+.|
T Consensus 142 lvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G 205 (258)
T d1e32a2 142 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHG 205 (258)
T ss_dssp EEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTT
T ss_pred cEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcccC
Confidence 788899999999999998 786 89999999999999998877654332 22247788888866
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.6e-16 Score=135.44 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=149.4
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceEEeecCCC--
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD-- 124 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~----~~~~~~~~~~~~~~-- 124 (382)
+.++-+-..++.++|+++.+..+...+......|+++.||||+|||+++..+++.+.... ..+..+++++....
T Consensus 8 lt~~a~~~~ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~lia 87 (268)
T d1r6bx2 8 LNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 87 (268)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C
T ss_pred HHHHHHcCCCCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhc
Confidence 445555567788999999999999999888888899999999999999999999875422 23345666665431
Q ss_pred --cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHHHhcCCceEEEEeec
Q 016800 125 --RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 125 --~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.....+.+.+.......... +..|++|||++.+- .+..+.|..+|.. +...+|.+|+
T Consensus 88 g~~~~g~~e~r~~~i~~~~~~~----------~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r--g~i~vIgatT 155 (268)
T d1r6bx2 88 GTKYRGDFEKRFKALLKQLEQD----------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTT 155 (268)
T ss_dssp CCCCSSCHHHHHHHHHHHHSSS----------SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEEC
T ss_pred cCccchhHHHHHHHHHHHhhcc----------CCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC--CCCeEEEeCC
Confidence 22344555554444332221 55699999999982 3456777777764 4566777775
Q ss_pred Cc-----cccchhhhcccceEEecCCCHHHHHHHHHHHH----HHhCCCCCHHHHHHHHHhc------CCCHHHHHHHHH
Q 016800 194 YI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC----NEEGLNLDAEALSTLSSIS------QGDLRRAITYLQ 258 (382)
Q Consensus 194 ~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~l~~~s------~gdlr~a~~~l~ 258 (382)
+. ..-.+.|.+|++.+.+++|+.++...+|.... ..+++.++++++..+++.+ ..-|.+|+.+++
T Consensus 156 ~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdllD 235 (268)
T d1r6bx2 156 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 235 (268)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHH
T ss_pred HHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHHHHHH
Confidence 32 23468899999999999999999999987754 3468999999999998877 466999999999
Q ss_pred HHHHhc
Q 016800 259 GAARLF 264 (382)
Q Consensus 259 ~~~~~~ 264 (382)
.++...
T Consensus 236 ea~a~~ 241 (268)
T d1r6bx2 236 EAGARA 241 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.71 E-value=2.2e-16 Score=132.66 Aligned_cols=185 Identities=17% Similarity=0.203 Sum_probs=130.4
Q ss_pred CCCCccc-C--cHHHHHHHHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHH
Q 016800 58 KQVKDVA-H--QEEVVRVLTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (382)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
.+|++++ | ++.+.+.+.++++..... .++||||+|+||||+++++++++.... ..++.++..+.. .....
T Consensus 7 ~tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~---~~~~~~~~~~~~--~~~~~ 81 (213)
T d1l8qa2 7 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSADDFA--QAMVE 81 (213)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHHHHH--HHHHH
T ss_pred CChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCc---cceEEechHHHH--HHHHH
Confidence 3888876 4 566677777777654332 299999999999999999999985432 345555543221 11111
Q ss_pred HH-----HHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcC-CceEEEEeecCcc----ccch
Q 016800 133 KI-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYS-KVTRFFFICNYIS----RIIE 200 (382)
Q Consensus 133 ~l-----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~-~~~~~Il~~~~~~----~l~~ 200 (382)
.+ ..+.... . ...+++|||+|.+. +..+..|+.+++... ....+|++++.+. ...+
T Consensus 82 ~~~~~~~~~~~~~~-~-----------~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~ 149 (213)
T d1l8qa2 82 HLKKGTINEFRNMY-K-----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 149 (213)
T ss_dssp HHHHTCHHHHHHHH-H-----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHccchhhHHHHH-h-----------hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccch
Confidence 11 1111111 0 34699999999884 567888888887643 4456777776432 3568
Q ss_pred hhhcccc---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016800 201 PLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 201 ~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~gdlr~a~~~l~~~~ 261 (382)
.++||+. ++.++ |+.++..++|++.+...|+.++++++++|++.+ .|+|.+...+..+.
T Consensus 150 dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~ 211 (213)
T d1l8qa2 150 RLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIK 211 (213)
T ss_dssp HHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHH
T ss_pred HHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHhh
Confidence 8999976 77785 577889999999999999999999999999987 57998877776654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=4.6e-17 Score=141.78 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=110.9
Q ss_pred CC-CCCcccCcHHHHHHHHHHHH----c-------CCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 57 PK-QVKDVAHQEEVVRVLTNTLE----T-------ANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 57 p~-~~~~~~g~~~~~~~l~~~l~----~-------~~~--~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
|. +|+|+.|.+++++.+.+.+. . |.. .++|||||||||||+++++++.++ +..++.++++
T Consensus 2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~------~~~~~~~~~~ 75 (265)
T d1r7ra3 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGP 75 (265)
T ss_dssp CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHT------TCEEEEECHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHh------CCcEEEEEHH
Confidence 54 89999998887766665542 1 222 249999999999999999999998 4556666653
Q ss_pred CCcc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHHHhc--CC
Q 016800 123 DDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETY--SK 184 (382)
Q Consensus 123 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~--~~ 184 (382)
+..+ .......+.......... .+.+|+|||+|.+... ..+.|+..++.. ..
T Consensus 76 ~l~~~~~~~~~~~l~~~f~~A~~~----------~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 145 (265)
T d1r7ra3 76 ELLTMWFGESEANVREIFDKARQA----------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 145 (265)
T ss_dssp HHHTSCTTTHHHHHHHHHHHHHHT----------CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------
T ss_pred HhhhccccchHHHHHHHHHHHHhc----------CCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCC
Confidence 3110 111112222222221111 4579999999987422 234555555432 23
Q ss_pred ceEEEEeecCccccchhhhc--ccc-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcC
Q 016800 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQ 247 (382)
Q Consensus 185 ~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~ 247 (382)
.+.+|++||.++.+++.+++ |+. .++|++|+.++..++++..+++. ....+ .+..+++.+.
T Consensus 146 ~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~--~~~~~~~l~~la~~t~ 210 (265)
T d1r7ra3 146 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--PVAKDVDLEFLAKMTN 210 (265)
T ss_dssp CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC------CCCCHHHHHHHC
T ss_pred CEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccC--CchhhhhHHHHHhcCC
Confidence 46788889999999999986 676 89999999999999998765432 22221 3556666554
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=2.6e-14 Score=129.74 Aligned_cols=203 Identities=18% Similarity=0.179 Sum_probs=140.4
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceEEeecCCCc-
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDDR- 125 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~----~~~~~~~~~~~~~~~~- 125 (382)
++++-+-..++.++|++..+..+...+......|.+|.||||+|||+++..+++.+... ...+..++.++.....
T Consensus 12 l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~a 91 (387)
T d1qvra2 12 LTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA 91 (387)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhc
Confidence 33444556788899999999999999988887789999999999999999999887533 2334567777765322
Q ss_pred ---chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 126 ---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 126 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
....+.+.+........... +.-|++|||++.+- .++.|.|..+|..+ ...+|.+|+.
T Consensus 92 g~~~~g~~e~r~~~i~~~~~~~~---------~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg--~~~~I~~tT~ 160 (387)
T d1qvra2 92 GAKYRGEFEERLKAVIQEVVQSQ---------GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATTL 160 (387)
T ss_dssp ------CHHHHHHHHHHHHHTTC---------SSEEEEECCC-------------------HHHHHTT--CCCEEEEECH
T ss_pred ccCcchhHHHHHHHHHHHhccCC---------CceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCC--CcceeeecCH
Confidence 22345555544433322211 34689999999982 35578899999764 4456776643
Q ss_pred c----cccchhhhcccceEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhc------CCCHHHHHHHHHHH
Q 016800 195 I----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSIS------QGDLRRAITYLQGA 260 (382)
Q Consensus 195 ~----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s------~gdlr~a~~~l~~~ 260 (382)
. ..-.++|.+|++.|.+++|+.++...+|..... .+++.++++++..++..| ..-|.+|+.+|+.+
T Consensus 161 ~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a 240 (387)
T d1qvra2 161 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 240 (387)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHHHHHHH
Confidence 1 123688999999999999999999999887654 458899999999999876 47899999999998
Q ss_pred HHhc
Q 016800 261 ARLF 264 (382)
Q Consensus 261 ~~~~ 264 (382)
+...
T Consensus 241 ~a~~ 244 (387)
T d1qvra2 241 AARL 244 (387)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.59 E-value=2.4e-14 Score=122.75 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=98.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc---chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vlii 161 (382)
+||+||||||||++|+++|+++ +..++.+++++.. ........+.......... .+.||+|
T Consensus 43 vLL~GppGtGKT~la~alA~~~------~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~----------~p~il~i 106 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS----------QLSCVVV 106 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTS----------SEEEEEE
T ss_pred EEEECcCCCCHHHHHHHHhhcc------cccccccccccccccccccchhhhhhhhhhhhhhc----------ccceeeh
Confidence 9999999999999999999998 4567777765421 1111122233333222221 5679999
Q ss_pred eCCCCC----------CHHHHHHHHHHHHhcCC---ceEEEEeecCccccchh-hhcccc-eEEecCCC-HHHHHHHHHH
Q 016800 162 DEADSM----------TEDAQNALRRTMETYSK---VTRFFFICNYISRIIEP-LASRCA-KFRFKPLS-EEVMSSRVLH 225 (382)
Q Consensus 162 De~d~l----------~~~~~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~-l~sr~~-~i~~~~~~-~~~~~~~l~~ 225 (382)
||+|.+ .....+.|+..++.... .+.+|.+||.++.+.+. +++|+. .+.++.++ .+++..++..
T Consensus 107 DEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~~ 186 (246)
T d1d2na_ 107 DDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL 186 (246)
T ss_dssp CCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH
T ss_pred hhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCCchhHHHHHHHHHh
Confidence 999865 23445677777765432 45677788988877654 677877 67885553 4555555532
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCC-----CHHHHHHHHH
Q 016800 226 ICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQ 258 (382)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~s~g-----dlr~a~~~l~ 258 (382)
. ..+++.....+++.+.| .++.++..++
T Consensus 187 ----~-~~~~~~~~~~i~~~~~g~~~~~~ik~ll~~ie 219 (246)
T d1d2na_ 187 ----L-GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIE 219 (246)
T ss_dssp ----H-TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred ----c-cCCChHHHHHHHHHcCCCccchhHHHHHHHHH
Confidence 2 23677777777777655 3666666554
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.58 E-value=6.3e-14 Score=120.11 Aligned_cols=211 Identities=18% Similarity=0.201 Sum_probs=137.6
Q ss_pred cccCcHHHHHHHHHHHHcC-C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLETA-N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~-~-~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (382)
++||+...++.+.+.++.. . ..+++|+|++||||+.+|+++...... ....++.+++..... ......+-....
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~---~~~~~~~~~~~~~~~-~~~~~~lfg~~~ 76 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR---SKEPFVALNVASIPR-DIFEAELFGYEK 76 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT---TTSCEEEEETTTSCH-HHHHHHHHCBCT
T ss_pred CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC---cccccccchhhhhhh-cccHHHhcCccc
Confidence 5788888887777666543 2 224999999999999999999875422 234566777765422 222221111000
Q ss_pred hhhcCCC--CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-----------CceEEEEeecCcc-------ccc
Q 016800 140 VAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (382)
Q Consensus 140 ~~~~~~~--~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~ 199 (382)
....... ..+.+...+...++|||+|.++...|..|++++++.. .++++|++++..- .+.
T Consensus 77 ~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~ 156 (247)
T d1ny5a2 77 GAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFR 156 (247)
T ss_dssp TSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred CCcCCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCc
Confidence 0000000 0000111234589999999999999999999998532 2467888886532 245
Q ss_pred hhhhcccc--eEEecCCC--HHHHHHHHHH----HHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHhc-CC
Q 016800 200 EPLASRCA--KFRFKPLS--EEVMSSRVLH----ICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (382)
Q Consensus 200 ~~l~sr~~--~i~~~~~~--~~~~~~~l~~----~~~~~~~---~~~~~~~~~l~~~s-~gdlr~a~~~l~~~~~~~-~~ 266 (382)
+.+..|+. .+.++|+. .+++..++.. .+.+.+. .++++++..|..+. .||++.+.+.++.+...+ +.
T Consensus 157 ~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~~~~~ 236 (247)
T d1ny5a2 157 EDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGK 236 (247)
T ss_dssp HHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 56666665 67787875 4677655444 4444443 37899999998876 899999999999988777 56
Q ss_pred CCChhhHhhh
Q 016800 267 SITSKDLISV 276 (382)
Q Consensus 267 ~It~~~v~~~ 276 (382)
.|+.+++-.+
T Consensus 237 ~I~~~dl~~l 246 (247)
T d1ny5a2 237 FIDRGELSCL 246 (247)
T ss_dssp EECHHHHHHH
T ss_pred eECHHHcccc
Confidence 6888887553
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=3.3e-14 Score=126.42 Aligned_cols=167 Identities=22% Similarity=0.287 Sum_probs=117.2
Q ss_pred CcccCcHHHHHHHHHHHHc-------CCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc-----
Q 016800 61 KDVAHQEEVVRVLTNTLET-------ANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG----- 126 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~-------~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~----- 126 (382)
..++||+++++.+...+.. ...| .++|.||+|+|||.+|+.+++.+. .+++.++++....
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~------~~~i~~d~s~~~~~~~~~ 95 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHTVS 95 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSSSSCCS
T ss_pred CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhcc------CCeeEeccccccchhhhh
Confidence 4788999999988777641 1222 389999999999999999999873 3455555532110
Q ss_pred ---------hH-HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCc
Q 016800 127 ---------IN-VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKV 185 (382)
Q Consensus 127 ---------~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~ 185 (382)
.. .....+...... .++.|+++||+|+++++.++.|++++++. -.+
T Consensus 96 ~l~g~~~gy~g~~~~~~l~~~~~~-------------~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf~n 162 (315)
T d1r6bx3 96 RLIGAPPGYVGFDQGGLLTDAVIK-------------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRN 162 (315)
T ss_dssp SSCCCCSCSHHHHHTTHHHHHHHH-------------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhcccCCCccccccCChhhHHHHh-------------CccchhhhcccccccchHhhhhHHhhccceecCCCCCccCccc
Confidence 10 000111111111 16679999999999999999999999863 256
Q ss_pred eEEEEeecCcc-------------------------ccchhhhcccc-eEEecCCCHHHHHHHHHHHHHH-------hC-
Q 016800 186 TRFFFICNYIS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG- 231 (382)
Q Consensus 186 ~~~Il~~~~~~-------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~- 231 (382)
+.+|+++|-.. .+.|.+.+|+. ++.|.|++.+++..++...+.. .+
T Consensus 163 ~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i 242 (315)
T d1r6bx3 163 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 242 (315)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 77888886321 25678888998 8999999999998886654432 23
Q ss_pred -CCCCHHHHHHHHHhc
Q 016800 232 -LNLDAEALSTLSSIS 246 (382)
Q Consensus 232 -~~~~~~~~~~l~~~s 246 (382)
+.+++++++.|++.+
T Consensus 243 ~l~~~~~a~~~l~~~~ 258 (315)
T d1r6bx3 243 SLEVSQEARNWLAEKG 258 (315)
T ss_dssp EEEECHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhC
Confidence 347899999998764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.56 E-value=3.6e-14 Score=125.95 Aligned_cols=170 Identities=24% Similarity=0.367 Sum_probs=119.9
Q ss_pred CcccCcHHHHHHHHHHHHc-------CCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHH-
Q 016800 61 KDVAHQEEVVRVLTNTLET-------ANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV- 130 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~-------~~~~--~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~- 130 (382)
+.++||+++++.+...+.. ...| .++|+||+|+|||.+|+.+++.+++.. ..++.++++.......+
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~---~~~~~~~~~~~~~~~~~~ 99 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHAVS 99 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSGGGG
T ss_pred CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCC---cceEEEeccccccchhhh
Confidence 4678999999888766542 1223 279999999999999999999986543 45666766543221110
Q ss_pred --------------HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc-----------CCc
Q 016800 131 --------------RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKV 185 (382)
Q Consensus 131 --------------~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~ 185 (382)
...+...... .++.||++||+|+++++.++.|++++++. ..+
T Consensus 100 ~L~g~~~gyvG~~~~~~l~~~~~~-------------~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~ 166 (315)
T d1qvra3 100 RLIGAPPGYVGYEEGGQLTEAVRR-------------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRN 166 (315)
T ss_dssp GC--------------CHHHHHHH-------------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred hhcCCCCCCcCcccCChHHHHHHh-------------CCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEecCcc
Confidence 0111111111 15679999999999999999999999864 146
Q ss_pred eEEEEeecCc--------------------------cccchhhhcccc-eEEecCCCHHHHHHHHHHHHHH-------hC
Q 016800 186 TRFFFICNYI--------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG 231 (382)
Q Consensus 186 ~~~Il~~~~~--------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~ 231 (382)
+.||+++|-. ..+.+.+.+|+. ++.|.|++.+++.+++.....+ .+
T Consensus 167 ~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~ 246 (315)
T d1qvra3 167 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKR 246 (315)
T ss_dssp EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 7788888631 236788889998 6789999999999987654432 23
Q ss_pred --CCCCHHHHHHHHHhc
Q 016800 232 --LNLDAEALSTLSSIS 246 (382)
Q Consensus 232 --~~~~~~~~~~l~~~s 246 (382)
+.+++++.+.|++.+
T Consensus 247 i~l~i~~~~~~~L~~~~ 263 (315)
T d1qvra3 247 ISLELTEAAKDFLAERG 263 (315)
T ss_dssp CEEEECHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHhC
Confidence 347899999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=1.8e-14 Score=128.03 Aligned_cols=152 Identities=20% Similarity=0.252 Sum_probs=97.9
Q ss_pred cccCcHHHHHHHHHHHHc--------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcc-
Q 016800 62 DVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG- 126 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--------------~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~- 126 (382)
.++||+++++.+...+.+ ....++||+||||||||.+|+++|+.+. ..++.++++....
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~------~~~~~i~~s~~~~~ 88 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKFTEV 88 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEGGGGSSC
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccc------cchhcccccccccc
Confidence 468999999988776621 1334599999999999999999999973 4566666654211
Q ss_pred ---hHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHH------------HHHHHHHHHHhc---------
Q 016800 127 ---INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED------------AQNALRRTMETY--------- 182 (382)
Q Consensus 127 ---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~Ll~~le~~--------- 182 (382)
.......+........... . ....+.||+|||+|++.+. .++.|+..++..
T Consensus 89 ~~~~~~~~~~~~~~f~~a~~~~--~---~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i 163 (309)
T d1ofha_ 89 GYVGKEVDSIIRDLTDSAGGAI--D---AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 163 (309)
T ss_dssp CSGGGSTTHHHHHHHHTTTTCH--H---HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred eeEeeeccccccccchhhhccc--c---cccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEE
Confidence 1111111222111110000 0 0002469999999998532 467788888742
Q ss_pred -CCceEEEEe----ecCccccchhhhcccc-eEEecCCCHHHHHHHHH
Q 016800 183 -SKVTRFFFI----CNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (382)
Q Consensus 183 -~~~~~~Il~----~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 224 (382)
..+..||++ .+.+..+.+.++.|+. .+.|++|+..+..+++.
T Consensus 164 ~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~ 211 (309)
T d1ofha_ 164 KTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 211 (309)
T ss_dssp ECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred EccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence 122334444 2456778899999997 78999999999998863
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.51 E-value=1.7e-13 Score=123.64 Aligned_cols=174 Identities=19% Similarity=0.214 Sum_probs=110.2
Q ss_pred CcccCcHHHHHHHHHHHH------------------------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 61 KDVAHQEEVVRVLTNTLE------------------------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~------------------------------~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
+.++||+++++.+..++. +....++||.||+|||||.+|+++|+.+
T Consensus 17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~---- 92 (364)
T d1um8a_ 17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL---- 92 (364)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT----
T ss_pred CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhc----
Confidence 358899999988876653 1234459999999999999999999986
Q ss_pred CCCCceEEeecCCCcchH----HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCC--------------CCHHHH
Q 016800 111 LYKSRVLELNASDDRGIN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS--------------MTEDAQ 172 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~--------------l~~~~~ 172 (382)
+..++.++++...... .+...+..+....... ....++.+|++||+++ ..++.+
T Consensus 93 --~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~------v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~ 164 (364)
T d1um8a_ 93 --DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWN------VQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQ 164 (364)
T ss_dssp --TCCEEEEEGGGCC--------CTHHHHHHHHHTTTC------HHHHTTSEEEEETGGGC--------------CHHHH
T ss_pred --ccceeehhhhhcccchhhHhhhccchhhhhhhchhH------HHHhhcccchhhhhhhhccccccccccccccchHHH
Confidence 3445666654322211 1112222222111100 0011567999999999 556789
Q ss_pred HHHHHHHHhcC-------------CceEEEEeecC---------------------------------------------
Q 016800 173 NALRRTMETYS-------------KVTRFFFICNY--------------------------------------------- 194 (382)
Q Consensus 173 ~~Ll~~le~~~-------------~~~~~Il~~~~--------------------------------------------- 194 (382)
+.|++.++... .++.++.++|-
T Consensus 165 ~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (364)
T d1um8a_ 165 QALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQT 244 (364)
T ss_dssp HHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCH
T ss_pred HhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccH
Confidence 99999999421 12223322211
Q ss_pred ----ccccchhhhcccc-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc
Q 016800 195 ----ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (382)
Q Consensus 195 ----~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s 246 (382)
...+.|.+..|.. ++.|++++.+++.+++.. .++.+|+ .+++++++.|++.+
T Consensus 245 ~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g 314 (364)
T d1um8a_ 245 HDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLA 314 (364)
T ss_dssp HHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhc
Confidence 0114577888888 789999999999999853 2333465 46899999999865
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.50 E-value=8.4e-14 Score=125.41 Aligned_cols=150 Identities=18% Similarity=0.157 Sum_probs=91.6
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-------C----------CCCCC--------
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-------G----------PELYK-------- 113 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~-------~----------~~~~~-------- 113 (382)
.|.+++||+.++..+.-.+......|+||.||||||||++|+.++..+- + +....
T Consensus 5 ~f~~I~Gq~~~kral~laa~~~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (333)
T d1g8pa_ 5 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIR 84 (333)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEE
T ss_pred ChhhccCcHHHHHHHHHHHhccCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccccCccc
Confidence 7999999999998776555433334799999999999999999998651 0 00000
Q ss_pred --CceEEeecCCCcchHHH------HHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC--
Q 016800 114 --SRVLELNASDDRGINVV------RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-- 183 (382)
Q Consensus 114 --~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-- 183 (382)
..+..... . .....+ ...+.. ..... ..+........|+++||++.++++.+++|+..||+..
T Consensus 85 ~~~~~~~~~~-~-~~~~~l~G~~d~~~~~~~-g~~~~----~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~ 157 (333)
T d1g8pa_ 85 KPTPVVDLPL-G-VSEDRVVGALDIERAISK-GEKAF----EPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENV 157 (333)
T ss_dssp ECCCEEEECT-T-CCHHHHHCEECHHHHHHH-CGGGE----ECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEE
T ss_pred ccCceeeccC-C-CCcccccCcchhhhcccc-Cccee----eccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEE
Confidence 00111111 1 011111 111110 00000 0011111145799999999999999999999999652
Q ss_pred -----------CceEEEEeecCc-cccchhhhcccc-eEEecCCC
Q 016800 184 -----------KVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLS 215 (382)
Q Consensus 184 -----------~~~~~Il~~~~~-~~l~~~l~sr~~-~i~~~~~~ 215 (382)
..+.++.++|.. ..+.+++.+|+. .+.+..+.
T Consensus 158 i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~ 202 (333)
T d1g8pa_ 158 VERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPR 202 (333)
T ss_dssp ECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCC
T ss_pred ecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcc
Confidence 344455555653 468899999998 56776654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=8.5e-14 Score=112.96 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=118.4
Q ss_pred hhhhcCCCCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceEEeecC----
Q 016800 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNAS---- 122 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~----~~~~~~~~~~~~~---- 122 (382)
+.++-+...++.++|+++.+..+...+......|++|.||||+|||+++..+|+.+... ...+..+++++..
T Consensus 12 lt~~a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiA 91 (195)
T d1jbka_ 12 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 91 (195)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhc
Confidence 34455566788899999999999999998888889999999999999999999987532 2344567777753
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHHHhcCCceEEEEeecC
Q 016800 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.......+.+.+........... +.-|++|||++.+-. ++.+.|..+|+. +...+|.+|+.
T Consensus 92 g~~~rG~~E~rl~~il~e~~~~~---------~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r--g~l~~IgatT~ 160 (195)
T d1jbka_ 92 GAKYRGEFEERLKGVLNDLAKQE---------GNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTL 160 (195)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHST---------TTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECH
T ss_pred cCCccHHHHHHHHHHHHHHhcCC---------CcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC--CCceEEecCCH
Confidence 23344566666655443322111 456999999998832 245888899985 44557777653
Q ss_pred c-----cccchhhhcccceEEecCCCHHHHHHHH
Q 016800 195 I-----SRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (382)
Q Consensus 195 ~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l 223 (382)
. ..-.++|.+|++.+.+..|+.++...+|
T Consensus 161 eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 161 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence 2 2347899999999999999999887654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.24 E-value=8.1e-12 Score=112.36 Aligned_cols=163 Identities=16% Similarity=0.012 Sum_probs=90.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe 163 (382)
.++|+||||||||++|+++++.+ +..++++|+++..+...++......... ................++++||
T Consensus 156 ~~~~~g~~~~gk~~~~~~~~~~~------~~~~i~in~s~~rs~~~l~~~~~~~~~l-~d~~~~~~~~~~~~~~~~~~De 228 (362)
T d1svma_ 156 YWLFKGPIDSGKTTLAAALLELC------GGKALNVNLPLDRLNFELGVAIDQFLVV-FEDVKGTGGESRDLPSGQGINN 228 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------CCEEECCSSCTTTHHHHHGGGTTCSCEE-ETTCCCSTTTTTTCCCCSHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc------CCCEEEEECcchhhHHHHHhHHHHHHHH-HHHHHHhhhhccCCCCeEEEeh
Confidence 39999999999999999999998 4578888888764432221111000000 0000000000011223555555
Q ss_pred CCCCCHHHHHHHHHHHHhcC--------------CceEEEEeecCcc-ccchhhhcccceEEecCCCHHHHHHHHHHHHH
Q 016800 164 ADSMTEDAQNALRRTMETYS--------------KVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228 (382)
Q Consensus 164 ~d~l~~~~~~~Ll~~le~~~--------------~~~~~Il~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 228 (382)
+|.| +..++... ....+|++||... .+..+++.++.++.+.++.......++..+++
T Consensus 229 iD~l--------~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~ 300 (362)
T d1svma_ 229 LDNL--------RDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLE 300 (362)
T ss_dssp HHTT--------HHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHH
T ss_pred Hhhc--------ccccCCcchhhhhhhhhchhhhccCCceeecccccccccccccCceEEeecCCCcHHHHHHHHHHHhc
Confidence 5544 33333211 1123788888643 22333343444444555555566677778888
Q ss_pred HhCCCCCHHHHHH-HHHhcCCCHHHHHHHHHHHH
Q 016800 229 EEGLNLDAEALST-LSSISQGDLRRAITYLQGAA 261 (382)
Q Consensus 229 ~~~~~~~~~~~~~-l~~~s~gdlr~a~~~l~~~~ 261 (382)
++....+.+.+.. +...+++|++..++.+...+
T Consensus 301 ~~~l~~~~~~L~~li~~~s~~D~~~~i~~~~~~~ 334 (362)
T d1svma_ 301 KRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEW 334 (362)
T ss_dssp TTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHHHH
T ss_pred ccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 8888777666644 45677888888877665433
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.23 E-value=3.2e-10 Score=98.48 Aligned_cols=185 Identities=16% Similarity=0.146 Sum_probs=107.8
Q ss_pred CCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-----CCcchHHHHHH
Q 016800 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-----DDRGINVVRTK 133 (382)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 133 (382)
.-++++|+++.++.+.+. ..++++++||+|+|||++++.+++.+... +..++.. .......+...
T Consensus 10 ~~~~f~GR~~el~~l~~~----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~ 79 (283)
T d2fnaa2 10 NRKDFFDREKEIEKLKGL----RAPITLVLGLRRTGKSSIIKIGINELNLP------YIYLDLRKFEERNYISYKDFLLE 79 (283)
T ss_dssp SGGGSCCCHHHHHHHHHT----CSSEEEEEESTTSSHHHHHHHHHHHHTCC------EEEEEGGGGTTCSCCCHHHHHHH
T ss_pred ChhhCCChHHHHHHHHhc----cCCEEEEEcCCCCcHHHHHHHHHHHCCCC------eEEEEeccccccccccHHHHHHH
Confidence 568999999998887653 34469999999999999999999887322 2222211 11111211111
Q ss_pred HHHHHHhh----------hcCC--------C-----CCCC------------CCCCCcEEEEEeCCCCCCHHH----HHH
Q 016800 134 IKTFAAVA----------VGSG--------Q-----RRGG------------YPCPPYKIIILDEADSMTEDA----QNA 174 (382)
Q Consensus 134 l~~~~~~~----------~~~~--------~-----~~~~------------~~~~~~~vliiDe~d~l~~~~----~~~ 174 (382)
+....... .... . .... ...++..++++||++.+.... ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~~~~~~~ 159 (283)
T d2fnaa2 80 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 159 (283)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccchHHHHHH
Confidence 11110000 0000 0 0000 012356789999998774322 334
Q ss_pred HHHHHHhcCCceEEEEeecCccc---c------c-hhhhcccceEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 016800 175 LRRTMETYSKVTRFFFICNYISR---I------I-EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (382)
Q Consensus 175 Ll~~le~~~~~~~~Il~~~~~~~---l------~-~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 244 (382)
+...+... ....+++++..... + . +....+...+.+.+++.++..+++.+.+...++.. +.++.+.+
T Consensus 160 l~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~--~~~~~i~~ 236 (283)
T d2fnaa2 160 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KDYEVVYE 236 (283)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--CCHHHHHH
T ss_pred HHHHHHhh-hhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCH--HHHHHHHH
Confidence 44444443 44555555533211 1 1 11222345789999999999999999988877654 44789999
Q ss_pred hcCCCHHHHHHH
Q 016800 245 ISQGDLRRAITY 256 (382)
Q Consensus 245 ~s~gdlr~a~~~ 256 (382)
.++|.|..+-..
T Consensus 237 ~~~G~P~~L~~~ 248 (283)
T d2fnaa2 237 KIGGIPGWLTYF 248 (283)
T ss_dssp HHCSCHHHHHHH
T ss_pred HhCCCHHHHHHH
Confidence 999999854333
|
| >d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=1.2e-09 Score=77.60 Aligned_cols=88 Identities=24% Similarity=0.428 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHH
Q 016800 282 PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLL 361 (382)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~ 361 (382)
++.+.++++++.++++.++.+.+++++..|++..+++..+.+++.....++...+.+++..+++++.++..|+++.++|.
T Consensus 3 ~~~i~~il~~~~~~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv~~~~i~~~~k~~i~~~la~~d~rL~~G~~e~lQL~ 82 (91)
T d1sxjd1 3 HDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLL 82 (91)
T ss_dssp SHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 45678999999999999999999999999999999999999887766679999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 016800 362 DVASNVIR 369 (382)
Q Consensus 362 ~l~~~l~~ 369 (382)
.|++++++
T Consensus 83 ~lla~i~~ 90 (91)
T d1sxjd1 83 NLLVKISQ 90 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999985
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.03 E-value=4.7e-10 Score=98.10 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=73.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEE
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 158 (382)
+||+||||||||.+|+++|.++... ..++.+++++.. +...++..+.... ...|
T Consensus 126 ~l~~G~pG~GKT~la~ala~~~~~~----~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~----------------~~~i 185 (321)
T d1w44a_ 126 VIVTGKGNSGKTPLVHALGEALGGK----DKYATVRFGEPLSGYNTDFNVFVDDIARAML----------------QHRV 185 (321)
T ss_dssp EEEECSSSSCHHHHHHHHHHHHHTT----SCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH----------------HCSE
T ss_pred EEEECCCCccHHHHHHHHHHHhcCC----CCeEEEEhhHhhhcccchHHHHHHHHHHHHh----------------hccE
Confidence 7789999999999999999998422 345566666532 2233444433321 1249
Q ss_pred EEEeCCCCCCHH------------HHHHHHHHHHhc--CCceEEEEeecCccccchhhh------cccc-eEEecCCCHH
Q 016800 159 IILDEADSMTED------------AQNALRRTMETY--SKVTRFFFICNYISRIIEPLA------SRCA-KFRFKPLSEE 217 (382)
Q Consensus 159 liiDe~d~l~~~------------~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~------sr~~-~i~~~~~~~~ 217 (382)
|+|||+|.+... ..+.|+.-|+.. ..++.+|.+|| +..+.++|- .|+. .+.+.+|+.+
T Consensus 186 lf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN-~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~ 264 (321)
T d1w44a_ 186 IVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKIVELVKEASRSNSTSLVISTDVD 264 (321)
T ss_dssp EEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CCCCCHHHHHHHHHHHHHSCSEEEEECSST
T ss_pred EEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCC-CcccccchhhhhhccCcccceeecCCCChH
Confidence 999999998432 245676666633 33566666676 444444443 2444 6778888777
Q ss_pred HHHHHH
Q 016800 218 VMSSRV 223 (382)
Q Consensus 218 ~~~~~l 223 (382)
+-.++|
T Consensus 265 ~r~~il 270 (321)
T d1w44a_ 265 GEWQVL 270 (321)
T ss_dssp TEEEEE
T ss_pred HHHHHH
Confidence 665555
|
| >d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=4.6e-09 Score=75.09 Aligned_cols=92 Identities=15% Similarity=0.257 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHH
Q 016800 281 PPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ 359 (382)
++..+.++++.+.++++.+++..+.+++ ..|+++.+++..+.+++......+...+.++++.++++++++..|.++.++
T Consensus 2 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~~~~~~~~~k~~ll~~la~~e~rL~~G~~e~lQ 81 (95)
T d1sxjc1 2 RPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQ 81 (95)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 5778899999999999999999999987 469999999999999988865455667789999999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 016800 360 LLDVASNVIRAVC 372 (382)
Q Consensus 360 l~~l~~~l~~~~~ 372 (382)
+.+|+..++..+.
T Consensus 82 L~~lla~~~~~~e 94 (95)
T d1sxjc1 82 GSAVIGAIKASFE 94 (95)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987654
|
| >d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.98 E-value=6.3e-09 Score=74.30 Aligned_cols=91 Identities=21% Similarity=0.326 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHH
Q 016800 281 PPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ 359 (382)
.+..+.++++.+.++++.++...+++++ ..|+++.+++..+.+++... .++...+..++..++++++++..|.++.++
T Consensus 3 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~~-~~~~~~k~~ll~~la~~d~rL~~G~~e~iQ 81 (95)
T d1iqpa1 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-PIEEPKKVLLADKIGEYNFRLVEGANEIIQ 81 (95)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS-SSCHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4778899999999999999999999996 57999999999999988765 589999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 016800 360 LLDVASNVIRAVC 372 (382)
Q Consensus 360 l~~l~~~l~~~~~ 372 (382)
+++|+.+++.+-+
T Consensus 82 L~alla~~~~i~~ 94 (95)
T d1iqpa1 82 LEALLAQFTLIGK 94 (95)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999997754
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.93 E-value=4.3e-08 Score=84.81 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=104.2
Q ss_pred cccCcHHHHHHHHHHHHc-CCC-C-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCC-CceEEeecCCCcchHHHHHHHHHH
Q 016800 62 DVAHQEEVVRVLTNTLET-ANC-P-HMLFYGPPGTGKTTTALAIAHQLFGPELYK-SRVLELNASDDRGINVVRTKIKTF 137 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-~~~-~-~lll~Gp~G~GKt~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 137 (382)
+++|++..+..+..++.. ... . .+.|+|+.|+||||+|+.+.+......... ..++.+..........+...+...
T Consensus 21 ~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~ 100 (277)
T d2a5yb3 21 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL 100 (277)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHH
Confidence 467999999989888754 222 2 278999999999999999987642111111 122333333333333333333332
Q ss_pred HHhhhcCC-C-CC--C-C------------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccccch
Q 016800 138 AAVAVGSG-Q-RR--G-G------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (382)
Q Consensus 138 ~~~~~~~~-~-~~--~-~------------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 200 (382)
........ . .. . . +-.+++-++|+|++... .... .+.. ..+++|+||... .+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~--~~~~----~~~~--~~srilvTTR~~-~v~~ 171 (277)
T d2a5yb3 101 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--ETIR----WAQE--LRLRCLVTTRDV-EISN 171 (277)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--HHHH----HHHH--TTCEEEEEESBG-GGGG
T ss_pred HHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHH--hhhh----hhcc--cCceEEEEeehH-HHHH
Confidence 21111000 0 00 0 0 01225679999998742 2222 2222 245677776644 4555
Q ss_pred hhhcccceEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCHHH
Q 016800 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGL-NLDAEALSTLSSISQGDLRR 252 (382)
Q Consensus 201 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~s~gdlr~ 252 (382)
.+...+..+.+++++.++..+.+...+..... .-.++....|++.|+|.|-.
T Consensus 172 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLA 224 (277)
T d2a5yb3 172 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPAT 224 (277)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHH
T ss_pred hcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHH
Confidence 55666678999999999999998654322111 11245678899999998854
|
| >d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=3.1e-08 Score=70.03 Aligned_cols=88 Identities=14% Similarity=0.285 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHH
Q 016800 281 PPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQ 359 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~ 359 (382)
++..+.++ +...++.++++.+.+++ ..|++..+++..+.+++.....++...+.++++.++++++++..|+++.++
T Consensus 2 ~P~~I~~i---l~~~~f~~a~~~l~~~l~~~Gys~~DIi~~l~~~i~~~~~~~e~~k~~il~~la~~~~rl~~G~~e~lQ 78 (92)
T d1sxjb1 2 HPLIVKKM---LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQ 78 (92)
T ss_dssp CHHHHHHH---HSCSSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CHHHHHHH---HHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 45555555 46789999999998855 689999999999999998766788888899999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 016800 360 LLDVASNVIRAV 371 (382)
Q Consensus 360 l~~l~~~l~~~~ 371 (382)
|.+|+.+++.+-
T Consensus 79 L~~lla~i~~i~ 90 (92)
T d1sxjb1 79 LASMLAKIHKLN 90 (92)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=98.78 E-value=1.2e-07 Score=86.97 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=61.5
Q ss_pred EEEEEeCCCCCC------------HHHHHHHHHHHHhcC----------CceEEEEeec----Cccccchhhhcccc-eE
Q 016800 157 KIIILDEADSMT------------EDAQNALRRTMETYS----------KVTRFFFICN----YISRIIEPLASRCA-KF 209 (382)
Q Consensus 157 ~vliiDe~d~l~------------~~~~~~Ll~~le~~~----------~~~~~Il~~~----~~~~l~~~l~sr~~-~i 209 (382)
.++++||++... ...+..++..++... .+..||..+. .+..+.|.+..|+. ++
T Consensus 251 ~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v 330 (443)
T d1g41a_ 251 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 330 (443)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEE
Confidence 378888887652 234566777776421 2233443332 24568899999988 78
Q ss_pred EecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhc
Q 016800 210 RFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS 246 (382)
Q Consensus 210 ~~~~~~~~~~~~~l~~-----------~~~~~~~~--~~~~~~~~l~~~s 246 (382)
.|.+++.+++.++|.. .+..+|+. +++++++.|++.+
T Consensus 331 ~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A 380 (443)
T d1g41a_ 331 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 380 (443)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred EccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 9999999999998853 23335664 5899999998765
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.48 E-value=1.8e-07 Score=74.94 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHHHhcCCceEEEEeecCc--cccchhhhcccc--eEEecCCCHHHH
Q 016800 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNYI--SRIIEPLASRCA--KFRFKPLSEEVM 219 (382)
Q Consensus 155 ~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sr~~--~i~~~~~~~~~~ 219 (382)
+..++++||++.. .......+.+.+++++. .+|+++... ..+...+..+.. ++...+.+.+.+
T Consensus 99 ~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~--~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd~~ 168 (178)
T d1ye8a1 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNV--NVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTS--EEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred CCCceeecCCCccchhhHHHHHHHHHHhccCCC--EEEEEEccHHHHHhhceEEEEeCCEEEEECCccHHHH
Confidence 6679999998765 35567778888876543 355555433 233445555433 566655544433
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=98.43 E-value=5.6e-07 Score=71.98 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC
Q 016800 68 EVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (382)
Q Consensus 68 ~~~~~l~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (382)
.-+..|..+++.....+ ++|+|||+||||.++.++.+.+.+ .++.++..... |......
T Consensus 38 ~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G------~vis~~N~~s~-----------F~Lq~l~--- 97 (205)
T d1tuea_ 38 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTSH-----------FWLEPLT--- 97 (205)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSSC-----------GGGGGGT---
T ss_pred HHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhCC------EEEeccCCCCC-----------ccccccc---
Confidence 34466677775544444 999999999999999999998732 22222221110 1111111
Q ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHH-HHHHHHhcC-------------CceEEEEeecCc---cccchhhhcccceE
Q 016800 147 RRGGYPCPPYKIIILDEADSMTEDAQNA-LRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAKF 209 (382)
Q Consensus 147 ~~~~~~~~~~~vliiDe~d~l~~~~~~~-Ll~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i 209 (382)
+.+++++||+......-.+. +..+++..+ ..+.+|+++|.. +.-.+.|.+|..++
T Consensus 98 --------~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~~~~d~~~~L~sRi~~f 169 (205)
T d1tuea_ 98 --------DTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVF 169 (205)
T ss_dssp --------TCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEE
T ss_pred --------CCeEEEEeccccchHHHHHHHHHhccCCCeeeeecccCCcccccCCCEEEEcCCCCCccccchhhhheEEEE
Confidence 56799999987665444444 455665321 123467777753 23457899999999
Q ss_pred Eec
Q 016800 210 RFK 212 (382)
Q Consensus 210 ~~~ 212 (382)
+|+
T Consensus 170 ~F~ 172 (205)
T d1tuea_ 170 EFP 172 (205)
T ss_dssp ECC
T ss_pred ECC
Confidence 887
|
| >d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=3.1e-06 Score=59.09 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHHH
Q 016800 297 FDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADEYLQLLDVASNVIRAV 371 (382)
Q Consensus 297 ~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~~ 371 (382)
..+.+..+++|+..+.+|..|+..+...+....+.+...+.+++...+.++++++.|..+..++|++++++|+++
T Consensus 24 L~~iR~~lYeLL~~cIpp~~Ilk~L~~~Ll~~~~~d~~lk~eii~~aa~yE~Rl~~GsK~IfHLEaFvAkfM~~l 98 (99)
T d1sxje1 24 LIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 98 (99)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhhc
Confidence 445677899999999999999999988776434677777889999999999999999999999999999999876
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=4.2e-06 Score=74.40 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC-CCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCC
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (382)
+..+..+...+.+ +..+|+||||||||+++..+...+... ......+. +-++.......+.+.+...........
T Consensus 151 ~~Q~~A~~~al~~---~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~-l~ApTgkAA~~L~e~~~~~~~~~~~~~ 226 (359)
T d1w36d1 151 NWQKVAAAVALTR---RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTD 226 (359)
T ss_dssp CHHHHHHHHHHTB---SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEE-EEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred cHHHHHHHHHHcC---CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEE-EecCcHHHHHHHHHHHHHHHhhcCchh
Confidence 4455555555533 248999999999999987766554321 11112232 333433334444433332211110000
Q ss_pred C-------------CCCC------------CCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCc
Q 016800 146 Q-------------RRGG------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 146 ~-------------~~~~------------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
. ...+ ...-+..++||||+..++......++ ...+..+++|++++..
T Consensus 227 ~~~~~~~~~~~t~~~ll~~~~~~~~~~~~~~~~l~~d~lIIDEaSmv~~~l~~~ll---~~~~~~~~lILvGD~~ 298 (359)
T d1w36d1 227 EQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI---DALPDHARVIFLGDRD 298 (359)
T ss_dssp CCCCSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHH---HTCCTTCEEEEEECTT
T ss_pred hhhhhhhhhhhHHHHHHhhhhcchHHHHhhhcccccceeeehhhhccCHHHHHHHH---HHhcCCCEEEEECChh
Confidence 0 0000 00114579999999999876554444 4456678899999854
|
| >d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: gamma subunit species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=9.3e-06 Score=60.73 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-------------------------CCCCHHH
Q 016800 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET-------------------------EDISDEQ 335 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------------------~~~~~~~ 335 (382)
..+.++++++++..+|..+++..++++...|.++..++..+..+++.. +.++.+.
T Consensus 3 D~~~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 82 (126)
T d1jr3a1 3 DDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTD 82 (126)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHcCCHHH
Confidence 367789999999999999999999999999999999999998887652 2477888
Q ss_pred HHHHHHHHHHHhhHhhcCCChHHHHHHHHHHHHHH
Q 016800 336 QARICKCLAEVDKCLVDGADEYLQLLDVASNVIRA 370 (382)
Q Consensus 336 ~~~~~~~~~~~~~~l~~g~~~~l~l~~l~~~l~~~ 370 (382)
+..+++.+.++...++...++++.+|..++++...
T Consensus 83 L~~~~~il~~~~~~ik~s~~~r~~~Em~llrll~~ 117 (126)
T d1jr3a1 83 IQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 117 (126)
T ss_dssp HHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999998863
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.19 E-value=7.4e-07 Score=76.41 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=37.8
Q ss_pred CCcccCcHHHHHHHHHHHHc---CCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 60 VKDVAHQEEVVRVLTNTLET---ANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~---~~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
|.+.-+++.....+...... ...|. +||+||||||||++|++++..+. ..++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~------~~~~~i~~ 65 (273)
T d1gvnb_ 6 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQ------GNVIVIDN 65 (273)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTT------TCCEEECT
T ss_pred cChHHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhh------cceEEEec
Confidence 34444455555555554433 23344 99999999999999999999983 34566665
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=98.14 E-value=3.1e-05 Score=59.57 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||||+||||+|+.+.+..
T Consensus 5 Iii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987764
|
| >d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: delta subunit species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=3.4e-06 Score=63.31 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------------------CCC
Q 016800 285 VEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVET---------------------------------EDI 331 (382)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~---------------------------------~~~ 331 (382)
+|++++++..+|...++..++++...|.+|..++..+..+++.. +.|
T Consensus 3 ~F~L~dai~~gd~~~a~~il~~l~~~g~~~~~il~~l~~~~~~l~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 82 (127)
T d1jr3d1 3 PFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRL 82 (127)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHcCCCHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999888776665442 478
Q ss_pred CHHHHHHHHHHHHHHhhHhhcC--CChHHHHHHHHHHHH
Q 016800 332 SDEQQARICKCLAEVDKCLVDG--ADEYLQLLDVASNVI 368 (382)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~g--~~~~l~l~~l~~~l~ 368 (382)
+...+.+++..+.++|..++.| .++...++.+++++|
T Consensus 83 s~~~l~~~l~~l~~~D~~~K~~~~~~~~~~le~l~l~lc 121 (127)
T d1jr3d1 83 SQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLC 121 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999976 477899999999987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.01 E-value=9e-06 Score=64.42 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=47.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 164 (382)
+++.|+||+||||+|+.++... ....++..+..........+.... . ....||+|..
T Consensus 17 iil~G~pGsGKST~a~~l~~~~--------~~~~i~~D~~~~~~~~~~~~~~~l----~-----------~g~~vIiD~t 73 (172)
T d1yj5a2 17 VVAVGFPGAGKSTFIQEHLVSA--------GYVHVNRDTLGSWQRCVSSCQAAL----R-----------QGKRVVIDNT 73 (172)
T ss_dssp EEEECCTTSSHHHHHHHHTGGG--------TCEEEEHHHHCSHHHHHHHHHHHH----H-----------TTCCEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHHhc--------CCEEEchHHHHHHHHHHHHHHHHH----H-----------CCCCceeeCc
Confidence 8999999999999999887654 223344433222222222222222 1 2346777754
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEE
Q 016800 165 DSMTEDAQNALRRTMETYSKVTRFFF 190 (382)
Q Consensus 165 d~l~~~~~~~Ll~~le~~~~~~~~Il 190 (382)
..+......++.+..+..-.+.+|.
T Consensus 74 -~~~~~~R~~~~~~a~~~~~~~~~v~ 98 (172)
T d1yj5a2 74 -NPDVPSRARYIQCAKDAGVPCRCFN 98 (172)
T ss_dssp -CCSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred -CCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 4566767777777766544444443
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.90 E-value=1.9e-05 Score=59.80 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=49.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCC------C-----------
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ------R----------- 147 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~----------- 147 (382)
.++.+|+|+|||.++-.++... ...++.+-+. ..-..++.+.+............ .
T Consensus 11 ~ll~apTGsGKT~~~~~~~~~~------~~~vli~~P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (136)
T d1a1va1 11 AHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPS-VAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGK 83 (136)
T ss_dssp EEEECCTTSCTTTHHHHHHHTT------TCCEEEEESC-HHHHHHHHHHHHHHHSCCCEEECSSCEECCCCSEEEEEHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc------CCcEEEEcCh-HHHHHHHHHHHHHHhhccccccccccccccccceEEEeeee
Confidence 7999999999998876555432 2334433332 22344454444443211110000 0
Q ss_pred ---CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHH
Q 016800 148 ---RGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (382)
Q Consensus 148 ---~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le 180 (382)
.......++.+||+||+|.++.+....+...++
T Consensus 84 ~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~ 119 (136)
T d1a1va1 84 FLADGGCSGGAYDIIICDECHSTDATSILGIGTVLD 119 (136)
T ss_dssp HHHTTGGGGCCCSEEEEETTTCCSHHHHHHHHHHHH
T ss_pred eccccchhhhcCCEEEEecccccCHHHHHHHHHHHH
Confidence 000011366899999999998876666655555
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=5.4e-05 Score=61.38 Aligned_cols=29 Identities=38% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCCCc-EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 80 ANCPH-MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 80 ~~~~~-lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+..|+ ++|.||+|+||||++-.+|..+..
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~ 35 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ 35 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44566 789999999999999999988753
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=97.77 E-value=4.8e-05 Score=64.37 Aligned_cols=124 Identities=17% Similarity=0.188 Sum_probs=73.0
Q ss_pred HHHHHHHHcC-CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCC
Q 016800 71 RVLTNTLETA-NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (382)
Q Consensus 71 ~~l~~~l~~~-~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 148 (382)
..|..++..+ ...+ ++|+||+++|||+++.++.+.+. .+..++..... |.....
T Consensus 91 ~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg-------~~~~~~~~~~~-----------f~l~~l------ 146 (267)
T d1u0ja_ 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP-------FYGCVNWTNEN-----------FPFNDC------ 146 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS-------CEEECCTTCSS-----------CTTGGG------
T ss_pred HHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHhc-------chhhccccCCC-----------cccccc------
Confidence 4455555433 2223 89999999999999999999872 11222222111 110111
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhc--------------CCceEEEEeecCccc----------cchhhhc
Q 016800 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYISR----------IIEPLAS 204 (382)
Q Consensus 149 ~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~--------------~~~~~~Il~~~~~~~----------l~~~l~s 204 (382)
.+.+++++||+..-. ...+.+..++..- .+...+|+++|+... -...+++
T Consensus 147 -----~~k~~~~~~e~~~~~-~~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~~~~~~~~~~~~l~~ 220 (267)
T d1u0ja_ 147 -----VDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD 220 (267)
T ss_dssp -----SSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT
T ss_pred -----CCCEEEEEeCCCccc-cHHHHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCCCcccccCCCccccccchHhhh
Confidence 166899999987543 3445566665421 234456666665433 2468999
Q ss_pred ccceEEecC--------CCHHHHHHHHH
Q 016800 205 RCAKFRFKP--------LSEEVMSSRVL 224 (382)
Q Consensus 205 r~~~i~~~~--------~~~~~~~~~l~ 224 (382)
|...+.|+. ++.+++..++.
T Consensus 221 R~~~~~F~~~~p~~~~~i~~~e~k~f~~ 248 (267)
T d1u0ja_ 221 RMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp TEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred hEEEEECCCcCCCccCCCCHHHHHHHHH
Confidence 998887754 44566666664
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.74 E-value=9.4e-06 Score=63.98 Aligned_cols=25 Identities=40% Similarity=0.681 Sum_probs=23.2
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.|.++|+||||+||||+++.+++.+
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999987
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.67 E-value=7.9e-05 Score=58.35 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+||||+|+.+++.+.
T Consensus 5 I~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999873
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=97.66 E-value=4.1e-05 Score=57.74 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCCCHHHHH--HHHHHHHhcCCceEEEEee
Q 016800 155 PYKIIILDEADSMTEDAQN--ALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~--~Ll~~le~~~~~~~~Il~~ 192 (382)
++++||+||+|.+++.... .++..+.... +..+|+.|
T Consensus 98 ~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~-~~~~l~lT 136 (140)
T d1yksa1 98 NWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMT 136 (140)
T ss_dssp CCSEEEETTTTCCSHHHHHHHHHHHHHHHTT-SCEEEEEC
T ss_pred ceeEEEEccccccChhhHHHHHHHHHHhhCC-CCCEEEEE
Confidence 6789999999999766432 3344444444 34444444
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=0.0001 Score=59.89 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=23.8
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
..|+ ++|.||+|+||||++-.+|..+...
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~ 38 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 38 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4456 7999999999999999999887433
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.64 E-value=0.00011 Score=59.53 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=67.3
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhc---CCCCCCCC-----
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SGQRRGGY----- 151 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~----- 151 (382)
+.|+ ++|.||+|+||||++-.+|..+...+ ..+.-+.+...+ ... .+.++.+...... ........
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g---~kV~lit~Dt~R-~ga-~eQL~~~a~~l~v~~~~~~~~~~~~~~~~ 84 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKG---FKVGLVGADVYR-PAA-LEQLQQLGQQIGVPVYGEPGEKDVVGIAK 84 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTT---CCEEEEECCCSS-HHH-HHHHHHHHHHHTCCEECCTTCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CceEEEEeeccc-cch-hHHHHHhccccCcceeecccchhhhHHHH
Confidence 3456 78999999999999998988764322 233333333222 111 1223333322110 00000000
Q ss_pred ------CCCCcEEEEEeCCCCCCHH----HHHHHHHHHHhcC-CceEEEEeecCccccchhhhcccc-----eEEecCCC
Q 016800 152 ------PCPPYKIIILDEADSMTED----AQNALRRTMETYS-KVTRFFFICNYISRIIEPLASRCA-----KFRFKPLS 215 (382)
Q Consensus 152 ------~~~~~~vliiDe~d~l~~~----~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sr~~-----~i~~~~~~ 215 (382)
...++.+|+||=+.+.+.+ ....+.++.+... ..+.+|+.++........+..++. .+-|..++
T Consensus 85 ~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlD 164 (211)
T d1j8yf2 85 RGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMD 164 (211)
T ss_dssp HHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEEECTT
T ss_pred HHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccCcceEEEeccc
Confidence 0125679999988875422 2345555555433 345555555443333333333221 34566666
Q ss_pred HHHHHHHHHHHHHHhC
Q 016800 216 EEVMSSRVLHICNEEG 231 (382)
Q Consensus 216 ~~~~~~~l~~~~~~~~ 231 (382)
+.....-+-..+...+
T Consensus 165 et~~~G~~l~~~~~~~ 180 (211)
T d1j8yf2 165 GTAKGGGALSAVAATG 180 (211)
T ss_dssp SCSCHHHHHHHHHTTT
T ss_pred CCCcccHHHHHHHHHC
Confidence 5444444444444433
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00018 Score=57.44 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
++|+|+||+||||+|+.+++.+..+
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~~~ 46 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLVCH 46 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6799999999999999999988543
|
| >d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00013 Score=55.22 Aligned_cols=125 Identities=11% Similarity=0.067 Sum_probs=82.1
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhcCCCCCCCC
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (382)
.|.+.++.+-.|-++|+|+...-+......+.+.+...+.........+ .....+ ..+......+..+
T Consensus 8 ~L~~~l~k~l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~---~l~~~~~t~slF~------- 75 (140)
T d1jqlb_ 8 QLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID--PNTDWN---AIFSLCQAMSLFA------- 75 (140)
T ss_dssp GHHHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCS--TTCCHH---HHHHHHHCCCTTC-------
T ss_pred HHHHHHhcCCCcEEEEEcChHHHHHHHHHHHHHHHHhCCcceeeeeccc--ccCCHH---HHHHHHcCCCccc-------
Confidence 4556666664444999999999999999999888755443222222221 222333 3333333333332
Q ss_pred CCCCcEEEEEeCCCCC-CHHHHHHHHHHHHhcCCceEEEEeecCcc------ccchhhhcccceEEe
Q 016800 152 PCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNYIS------RIIEPLASRCAKFRF 211 (382)
Q Consensus 152 ~~~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~~~------~l~~~l~sr~~~i~~ 211 (382)
.+++|+|++.+.. +....+.|.++++.+++.+.+|++++..+ ++.+++.+++.+|.+
T Consensus 76 ---~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l~k~g~vI~C 139 (140)
T d1jqlb_ 76 ---SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp ---CCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred ---CcEEEEEEcCCCCCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCchhhhhHHHHHHHhCCeEEeC
Confidence 7899999988765 45667889999999999998888876433 345667777666654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=1.6e-05 Score=61.91 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.||+|+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.60 E-value=0.00014 Score=59.10 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=66.1
Q ss_pred cccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhh
Q 016800 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (382)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (382)
++..++.+.+.+..+++.+ +.++.+|+|+|||.++..++..+. ..++.+-+ ...-..++.+.+..+....
T Consensus 68 ~~~Lr~yQ~eav~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~~------~~~Liv~p-~~~L~~q~~~~~~~~~~~~ 137 (206)
T d2fz4a1 68 EISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELS------TPTLIVVP-TLALAEQWKERLGIFGEEY 137 (206)
T ss_dssp CCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHSC------SCEEEEES-SHHHHHHHHHHHGGGCGGG
T ss_pred CCCcCHHHHHHHHHHHhCC---CcEEEeCCCCCceehHHhHHHHhc------CceeEEEc-ccchHHHHHHHHHhhcccc
Confidence 4456677777777776543 467889999999999988888763 22333332 2223344544444332211
Q ss_pred hcCC--CC-C-CCC--------------CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeec
Q 016800 142 VGSG--QR-R-GGY--------------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 142 ~~~~--~~-~-~~~--------------~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.... .. . ... ...+..+||+||+|.+..+ .+.++++......++-++++
T Consensus 138 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~lvIiDEaH~~~a~---~~~~i~~~~~~~~~lgLTAT 204 (206)
T d2fz4a1 138 VGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE---SYVQIAQMSIAPFRLGLTAT 204 (206)
T ss_dssp EEEESSSCBCCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTT---THHHHHHTCCCSEEEEEEES
T ss_pred hhhcccccccccccccceehhhhhhhHhhCCcCCEEEEECCeeCCcH---HHHHHHhccCCCcEEEEecC
Confidence 1000 00 0 000 0125679999999999644 34455555544445555543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=2.1e-05 Score=61.75 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=22.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
|.++|.|+||+||||+++.+++.+
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 678888999999999999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.58 E-value=0.00017 Score=56.61 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.|+||+||||+++.+++.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999998
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=2.2e-05 Score=62.37 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=23.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.|++|+||||+||||+++.+++.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3799999999999999999999884
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.52 E-value=0.00041 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
++|.||+|+||||++-.+|+.+..
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~~~ 32 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYYQN 32 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988753
|
| >d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein YrvN species: Prochlorococcus marinus [TaxId: 1219]
Probab=97.50 E-value=0.00024 Score=54.20 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-HHH
Q 016800 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE-YLQ 359 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~l~ 359 (382)
+.+.++.++++++.+|.+.++-|+.+|+..|++|..|.++|.....+ +++++....+...++..+.....|.++ ++.
T Consensus 2 HYd~iSA~~KSiRgSD~dAAly~larml~~Gedp~~i~RRli~~AsE--DIGlAdp~Al~~a~aa~~a~~~iG~PE~~i~ 79 (163)
T d3ctda1 2 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACE--DIGLADPNAIVVVQSCCDAFDRVGFPEGLFF 79 (163)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--TTGGGSTTHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred hhHHHHHHHHHHhcCCccHHHHHHHHHHHcCCchHHHHHHHHHHHHH--hhcccChhHHHHHHHHHHHHHHhCCchhHHH
Confidence 46788999999999999999999999999999999999999886666 888877777777788888888899754 777
Q ss_pred HHHHHHHHHH
Q 016800 360 LLDVASNVIR 369 (382)
Q Consensus 360 l~~l~~~l~~ 369 (382)
|...++-|+.
T Consensus 80 LAqaviyLA~ 89 (163)
T d3ctda1 80 LSQASLYLAI 89 (163)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777776663
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.48 E-value=0.00037 Score=55.78 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||||+||||+|+.|++.+
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999987
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=3.6e-05 Score=60.40 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=22.9
Q ss_pred CCc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 82 CPH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 82 ~~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++ ++|.||||+||||+++.+++.+.
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345 78999999999999999999984
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.47 E-value=2.3e-05 Score=62.37 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|.||||+||||+|++|++.+.
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999999873
|
| >d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein EfaeDRAFT 0938 species: Enterococcus faecium [TaxId: 1352]
Probab=97.47 E-value=0.00094 Score=44.66 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-HHHHHH
Q 016800 284 VVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE-YLQLLD 362 (382)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~l~l~~ 362 (382)
.+..++++++.+|.+.++-|+.+|+..| ++..+.+++.....+ +++..+...+....+-.+...+.|.++ ++.|..
T Consensus 3 ~iSA~~KSiRgSD~dAAlywlarml~~G-D~~~i~RRLi~~AsE--DIGlAdp~al~~~~~a~~a~~~iG~PE~~i~La~ 79 (88)
T d2qw6a1 3 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYE--DIGLGNPAAAARTVNAVLAAEKLGLPEARIPLAD 79 (88)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHH--TC---CHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHcC-ChhHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 5678999999999999999999999999 899999999876666 888887777777788888888899754 666666
Q ss_pred HHHHHH
Q 016800 363 VASNVI 368 (382)
Q Consensus 363 l~~~l~ 368 (382)
.++-++
T Consensus 80 aviyLa 85 (88)
T d2qw6a1 80 VVVDLC 85 (88)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.45 E-value=3.4e-05 Score=60.72 Aligned_cols=23 Identities=52% Similarity=0.777 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|+||||+||||+++.|++.+
T Consensus 7 ~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 7 NILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999986
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.45 E-value=0.00092 Score=53.85 Aligned_cols=105 Identities=21% Similarity=0.199 Sum_probs=55.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhhc---CCCCCCCC----------
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG---SGQRRGGY---------- 151 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~---------- 151 (382)
++|.||+|+||||++-.+|..+...+ .++.-+.+...+ .. ..+.++.+...... ........
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~g---~kV~lit~Dt~R-~g-A~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~ 87 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQR-PA-AREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 87 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSC-HH-HHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CcEEEEeccccc-ch-HHHHHHHHHHhcCCccccccccchhhHHHHHHHHH
Confidence 78999999999999999998875332 334434433222 11 12333333322100 00000000
Q ss_pred -CCCCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCC-ceEEEEeecC
Q 016800 152 -PCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNY 194 (382)
Q Consensus 152 -~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~-~~~~Il~~~~ 194 (382)
...++.+|+||=+.+.+ ....+.|.++.+...+ .+.+++.++.
T Consensus 88 ~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~ 134 (207)
T d1ls1a2 88 ARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 134 (207)
T ss_dssp HHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEecccc
Confidence 01255799999888764 3455666666655433 4444444433
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00028 Score=58.47 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=32.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+++|+|+||+- .+.......+++.+.+......+|++|.+...
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 200 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST 200 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred ccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 67899999986 57788888888888775555557777776543
|
| >d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein NTHI1458 species: Haemophilus influenzae [TaxId: 727]
Probab=97.36 E-value=0.00022 Score=55.64 Aligned_cols=86 Identities=17% Similarity=0.128 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-HHH
Q 016800 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE-YLQ 359 (382)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~l~ 359 (382)
+.+.++.++++++..|.+.++-|+.+|+..|++|..|.++|.....+ +++.+....+....+..+.....|.++ ++.
T Consensus 4 hYd~iSA~~KSiRgSD~dAaly~larml~~GeDp~~i~RRl~~~AsE--DIGlAdp~al~~a~~~~~a~~~iG~PE~~i~ 81 (184)
T d3bgea1 4 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE--DVGNADPRAMQVALAAWDCFTRVGAYEGERA 81 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--TTGGGCTTHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCChHHHHHHHHHHHHh--hcCCCCchHHHHHHHHHHHHHHhCCchHHHH
Confidence 56789999999999999999999999999999999999999876665 888887777777888888888889755 566
Q ss_pred HHHHHHHHH
Q 016800 360 LLDVASNVI 368 (382)
Q Consensus 360 l~~l~~~l~ 368 (382)
|...++-|+
T Consensus 82 LaqaviyLA 90 (184)
T d3bgea1 82 IAQAIIYLS 90 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.35 E-value=6.2e-05 Score=58.68 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.|+||+||||+++.+++.+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999998
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.33 E-value=5.5e-05 Score=59.75 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=22.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
++|+|+||+||||+|+++++.+..
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999999999843
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00074 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||||+||||.|+.+++.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.31 E-value=0.0018 Score=50.90 Aligned_cols=24 Identities=46% Similarity=0.807 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++|.||||+||||.++.|++.+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999999983
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.28 E-value=0.00073 Score=58.59 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.....|..+++.+. +++++||+|+||||++++++..+
T Consensus 153 ~~~~~~l~~~v~~~~--nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 153 EQAISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHHHHHHHHTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhCC--CEEEEeeccccchHHHHHHhhhc
Confidence 556667777777765 69999999999999999999876
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.27 E-value=0.00011 Score=59.31 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=17.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
+.++.+|+|+|||.++..++..
T Consensus 25 n~lv~~pTGsGKT~i~~~~~~~ 46 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIAMMIAEY 46 (200)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEeCCCCcHHHHHHHHHHH
Confidence 5889999999999876655544
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.27 E-value=6.9e-05 Score=58.96 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||||+++.+++.+
T Consensus 7 I~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=8.4e-05 Score=58.05 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.|.+.|+|++|+||||+++.+++.+..
T Consensus 2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 2 IPLLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 366899999999999999999998743
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.25 E-value=0.00057 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.5
Q ss_pred Cc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
|. ++++|.||+||||+|+.|++.+.
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55 79999999999999999998874
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.24 E-value=8.8e-05 Score=58.31 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+|+||+||||+|+.|++.+.
T Consensus 6 I~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 88999999999999999999973
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.23 E-value=0.0013 Score=52.23 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||||+||||.++.|++.+
T Consensus 5 riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999987
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.16 E-value=0.001 Score=55.42 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=30.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 196 (382)
+.+|+|+||+- .+.......+++.+.+......+|++|.+..
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 212 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 212 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 56799999986 5677777888888876544555677776654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.12 E-value=0.00014 Score=58.22 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+++|.||||+||||+++.|++.+
T Consensus 4 m~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 4 LKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999987
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.11 E-value=0.00073 Score=56.33 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=31.9
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
+.+++|+||+- .+.+.....+++.+........+|++|.+...
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~ 215 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 215 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 66799999986 56788888888888776555456777776543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.11 E-value=0.0024 Score=57.06 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=40.8
Q ss_pred CCCCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+++++--.+.....+.+++.... .-+||+||+|+||||+..++.+.+..+
T Consensus 135 ~~l~~LG~~~~~~~~l~~l~~~~~-GliLvtGpTGSGKSTTl~~~l~~~~~~ 185 (401)
T d1p9ra_ 135 LDLHSLGMTAHNHDNFRRLIKRPH-GIILVTGPTGSGKSTTLYAGLQELNSS 185 (401)
T ss_dssp CCGGGSCCCHHHHHHHHHHHTSSS-EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hhhhhhcccHHHHHHHHHHHhhhh-ceEEEEcCCCCCccHHHHHHhhhhcCC
Confidence 467777667888888887776544 138999999999999999999998544
|
| >d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: MgsA/YrvN C-terminal domain-like domain: Uncharacterized protein EfaeDRAFT 0938 species: Enterococcus faecium [TaxId: 1352]
Probab=97.10 E-value=0.0016 Score=50.80 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhcCCCh-HH
Q 016800 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQLFDVVVETEDISDEQQARICKCLAEVDKCLVDGADE-YL 358 (382)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~l 358 (382)
.+.+.++.++++++.+|.+.|+-|+.+|+..| +|..|.++|.....+ +++......+...++..+.....|.++ ++
T Consensus 2 ~hyd~iSA~~KSiRgSD~daAly~larml~~G-d~~~i~RRL~~~AsE--DIGlAdp~al~~a~~a~~a~~~iG~PE~~i 78 (186)
T d2r9ga1 2 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYE--DIGLGNPAAAARTVNAVLAAEKLGLPEARI 78 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH--TTGGGCHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CchHHHHHHHHHHHH--HhhccChHHHHHHHHHHHHHHHcCCchHHH
Confidence 35778999999999999999999999999999 899999999876665 888888787888888888888899855 66
Q ss_pred HHHHHHHHHH
Q 016800 359 QLLDVASNVI 368 (382)
Q Consensus 359 ~l~~l~~~l~ 368 (382)
.|...++-|+
T Consensus 79 ~LaqaviyLA 88 (186)
T d2r9ga1 79 PLADVVVDLC 88 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.0033 Score=51.33 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=39.0
Q ss_pred CCcccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
|..-..|..+...+...+..+..-+.|++|..|+|||.++...+.....
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~ 102 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 102 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH
Confidence 4434457888888888888888777999999999999998877766543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.00043 Score=54.67 Aligned_cols=22 Identities=41% Similarity=0.816 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||||+||||.++.|+..+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7888999999999999999987
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.98 E-value=0.00019 Score=57.65 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
|.++|.||||+||||.|+.+++.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.94 E-value=0.00023 Score=56.31 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.||||+||||.++.+++.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999997
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.93 E-value=0.00029 Score=56.30 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.3
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 80 ~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++-.++|.||||+||||.++.|++.+
T Consensus 4 ~r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 4 ARLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp SCCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 344458899999999999999999986
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0038 Score=50.20 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=26.2
Q ss_pred CcEEEEEeCCCCCC-HHHHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.-+.+|+||+|.|. .+..+.+..+++..+....+++.+.
T Consensus 146 ~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SA 185 (206)
T d1veca_ 146 HVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred ccceEEEeccccccccchHHHHHHHHHhCCCCCEEEEEEe
Confidence 56799999999775 3345556666666666655666554
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.0023 Score=51.85 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=27.3
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.-+.+++||+|.+... ..+.+.++++..+....+++.+..
T Consensus 151 ~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT 191 (212)
T d1qdea_ 151 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 191 (212)
T ss_dssp TCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred cceEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEee
Confidence 5679999999988543 355667777766666666665543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.88 E-value=0.0019 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
.+|+||||+|||+++..++.....
T Consensus 29 ~li~G~pGsGKT~l~~qia~~~~~ 52 (242)
T d1tf7a2 29 ILATGATGTGKTLLVSRFVENACA 52 (242)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998753
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=96.86 E-value=0.00057 Score=56.64 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.+...+
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 38899999999999999988765
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0025 Score=52.86 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=30.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcCC--ceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 196 (382)
+++|+|+||+- .+.......+.+.+.+... ...+|++|.+..
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~ 213 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH
T ss_pred CCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH
Confidence 67899999975 5678888888888876532 345677776643
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.85 E-value=0.0017 Score=53.11 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=31.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhc--CCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETY--SKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+++++.+. ...+.+|++|.+.+
T Consensus 163 ~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~ 207 (230)
T d1l2ta_ 163 NPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (230)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH
Confidence 67899999975 56788888888888764 23556788887653
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.84 E-value=0.00031 Score=55.50 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
++|.|+||+||||+++.+++.+...
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 7999999999999999999988544
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.0027 Score=48.60 Aligned_cols=43 Identities=7% Similarity=0.036 Sum_probs=27.5
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCccc
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 197 (382)
..-++++|..+.........+...+........+|++.|..+.
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl 124 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADI 124 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHH
T ss_pred cccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhh
Confidence 4457777766665555555556666666656667788877653
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.0039 Score=50.60 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeecCc
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICNYI 195 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~~~ 195 (382)
.-+.+|+||+|.|... ..+.+..+++..+....+++.+...
T Consensus 155 ~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~ 196 (218)
T d2g9na1 155 YIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 196 (218)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred cceEEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecC
Confidence 5579999999998543 3556666677666666677766543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.81 E-value=0.00034 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.||||+||||.|+.|++.+.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999983
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.00063 Score=52.72 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 5 v~liG~~~vGKSsLi~rl~~~~ 26 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKGI 26 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999888643
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.75 E-value=0.024 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.|.|.+|+|||++++++...
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999998754
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.75 E-value=0.0004 Score=55.61 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.++|.||||+||||.++.+++.+
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999999986
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0006 Score=55.63 Aligned_cols=24 Identities=42% Similarity=0.648 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l 106 (382)
|-+.+.||||+||+|.++.+++.+
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999997
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.72 E-value=0.00099 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+-|.||+|+||||+|+.|+..+..
T Consensus 25 IgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 569999999999999999987743
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0095 Score=45.78 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8999999999999999998754
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.014 Score=46.71 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=27.8
Q ss_pred CCcEEEEEeCCCCCC--HHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 154 PPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 154 ~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.+-+.+++||+|.|- ....+.+..+++..+....+++.+..
T Consensus 144 ~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT 186 (207)
T d1t6na_ 144 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 186 (207)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred cccceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeee
Confidence 356799999999774 24556666777766666666665543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.00043 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||||+||||.++.|++.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.65 E-value=0.0013 Score=52.86 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=25.8
Q ss_pred CcEEEEEeCCCCCCH----HHHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTE----DAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~----~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
...+||+||+|.+.. .....++..+...++++.+|+.|.
T Consensus 138 ~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSA 180 (202)
T d2p6ra3 138 AVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSA 180 (202)
T ss_dssp GCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred hhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcC
Confidence 456999999998743 234556666666666666666553
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.63 E-value=0.021 Score=42.99 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|+||+|||++++.+...-+
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~~ 25 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGEI 25 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 78999999999999999986543
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.63 E-value=0.008 Score=48.16 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=27.4
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
+-+.+|+||+|.|-. +....+..+++..+....+++.+.
T Consensus 143 ~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SA 182 (206)
T d1s2ma1 143 DCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSA 182 (206)
T ss_dssp TCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEES
T ss_pred cceEEEeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEE
Confidence 556899999998854 356667777776666666666554
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.0078 Score=48.87 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCCCH-HHHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l~~-~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
.-+.+|+||+|.|-. ...+.+..+++..+....+++.+..
T Consensus 159 ~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT 199 (222)
T d2j0sa1 159 AIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 199 (222)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred cceeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEe
Confidence 567999999998743 3456677777776666666665543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0029 Score=51.65 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=27.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhc--CCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETY--SKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....++..+.+. .....+|++|.+.+
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~ 192 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 67899999975 56777776666666542 22445677776543
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0025 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||++++.+...-+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~~f 30 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQGLF 30 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 79999999999999999987543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.59 E-value=0.00052 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
-++|.|+||+||||+++.+++.+...
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~~ 28 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999988543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.0023 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~f 31 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKGQF 31 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 79999999999999999987543
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.51 E-value=0.0012 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
-+.|+|.||+||||+|+.+++.+.
T Consensus 26 vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 26 TIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999998763
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.50 E-value=0.00098 Score=54.35 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.+.||||+||||.|+.|++.+
T Consensus 6 IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5577999999999999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.49 E-value=0.012 Score=45.55 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 72 ~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.+++..... .++|.|.+|+|||+++..+...
T Consensus 6 ~~~~~~~~k~~-kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 6 RIWRLFNHQEH-KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp HHHHHHTTSCE-EEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHhCCCeE-EEEEECCCCCCHHHHHHHHhcC
Confidence 34444443332 4999999999999999988754
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=96.48 E-value=0.0036 Score=51.36 Aligned_cols=42 Identities=7% Similarity=0.171 Sum_probs=30.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+++++.+.. ....+|++|.+..
T Consensus 157 ~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~ 201 (240)
T d1g2912 157 KPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (240)
T ss_dssp CCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred CCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 67899999975 567887877777776542 2455778877643
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.46 E-value=0.0032 Score=51.63 Aligned_cols=42 Identities=10% Similarity=0.212 Sum_probs=29.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhcC--CceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS--KVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+.+.....+++++.+.. ....+|++|.+..
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~ 198 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 67899999975 567777777777776542 2455777776654
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.0064 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++..+
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 38899999999999999998765
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.01 Score=45.60 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||+++..+...-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999988754
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=96.37 E-value=0.0028 Score=51.63 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhc--CCceEEEEeecCcc
Q 016800 154 PPYKIIILDEAD-SMTEDAQNALRRTMETY--SKVTRFFFICNYIS 196 (382)
Q Consensus 154 ~~~~vliiDe~d-~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~ 196 (382)
.+++++++||.- .+.+.....+++++.+. .....+|++|.+..
T Consensus 144 ~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~ 189 (229)
T d3d31a2 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189 (229)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred ccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH
Confidence 377899999975 56788877777777653 22455777776654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.012 Score=49.04 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=26.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
..|+||||+|||+++..++.....++ ..+++++..
T Consensus 57 tei~G~~gsGKTtl~l~~~~~~q~~g---~~~vyidtE 91 (263)
T d1u94a1 57 VEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAE 91 (263)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESS
T ss_pred EEEecCCCcHHHHHHHHHHHHHHcCC---CEEEEEccc
Confidence 79999999999999999998875443 234455443
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=96.34 E-value=0.0063 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8999999999999999987643
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.34 E-value=0.0011 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||+|+||||+++.+++..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999885
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.0036 Score=51.42 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceEEeecCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDD 124 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~---~~~~~~~~~~~~~~~ 124 (382)
++|+||||+|||+++..++...... ......++.++....
T Consensus 37 ~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (251)
T d1szpa2 37 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 79 (251)
T ss_dssp EEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecch
Confidence 8999999999999999887654322 112345566665543
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.32 E-value=0.007 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|++|+|||++++.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3899999999999999988654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.28 E-value=0.0012 Score=52.51 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||||+++.+++..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999999886
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0055 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|.+|+|||++++.+...-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.26 E-value=0.019 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
|.++|.|+||+|||++.+++...-.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5699999999999999999987643
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.25 E-value=0.012 Score=47.08 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=27.8
Q ss_pred CcEEEEEeCCCCC-CHHHHHHHHHHHHhcCCceEEEEeecC
Q 016800 155 PYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNY 194 (382)
Q Consensus 155 ~~~vliiDe~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~ 194 (382)
+-+.+||||+|.+ .......+.++++..+....+++.+..
T Consensus 145 ~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT 185 (208)
T d1hv8a1 145 NVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSAT 185 (208)
T ss_dssp SCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSS
T ss_pred cCcEEEEEChHHhhcCCChHHHHHHHHhCCCCCeEEEEEcc
Confidence 5579999999976 333455677777776666667776643
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.24 E-value=0.0091 Score=45.75 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
++|.|++|+|||++++.+...-+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~~~~~ 29 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASGQFNE 29 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC
Confidence 7899999999999999997755433
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0066 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.19 E-value=0.0053 Score=50.67 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|+||||+|||+++..++....
T Consensus 39 ~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 39 TEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999998764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=96.17 E-value=0.011 Score=48.54 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCccc
Q 016800 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYISR 197 (382)
Q Consensus 154 ~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~ 197 (382)
.+++++++||.- .+.+.....+.+++.+.. ....+|+++.+...
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~ 201 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHH
T ss_pred hCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 377899999975 578888888888877542 34557777766543
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.011 Score=47.24 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=26.4
Q ss_pred CcEEEEEeCCCCCCHH-HHHHHHHHHHhcCCceEEEEeec
Q 016800 155 PYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~-~~~~Ll~~le~~~~~~~~Il~~~ 193 (382)
.-+.++|||+|.+... ..+.+..++...+.+..+++.+.
T Consensus 147 ~l~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SA 186 (209)
T d1q0ua_ 147 TAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSA 186 (209)
T ss_dssp GCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEES
T ss_pred cceEEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEc
Confidence 4568999999988543 24556666666666666666654
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=96.13 E-value=0.0043 Score=47.12 Aligned_cols=50 Identities=8% Similarity=0.075 Sum_probs=35.0
Q ss_pred CcEEEEEeCCCCCCHH---HHHHHHHHHHhcCCceEEEEeecCccccchhhhcccc
Q 016800 155 PYKIIILDEADSMTED---AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~---~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 207 (382)
.+.+||+||+...-.- ..+.++.+++..|+.+-+|+|+.... +.|..+++
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p---~~L~e~AD 146 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH---RDILDLAD 146 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC---HHHHHHCS
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCC---HHHHHhcc
Confidence 7889999997432100 13577888888899999999987643 45555555
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.017 Score=47.35 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=28.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceEEeecCCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDD 124 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~---~~~~~~~~~~~~~~ 124 (382)
++|+||||+|||+++..++....... .....+..+.....
T Consensus 40 ~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T d1v5wa_ 40 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 82 (258)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHH
Confidence 89999999999999999998764332 12234455555443
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.0033 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|.+|+|||++++.+...-+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~~f 31 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQSYF 31 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 89999999999999999886543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.0019 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
++|+||||+|||+++..++......
T Consensus 26 ~~i~G~~GsGKT~l~l~la~~~~~~ 50 (242)
T d1n0wa_ 26 TEMFGEFRTGKTQICHTLAVTCQLP 50 (242)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999876544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.07 E-value=0.0017 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||||+++.+.+..
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999999998875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0043 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||+++..+...-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999987653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.05 E-value=0.005 Score=47.60 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||+++..+...-+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~~~ 30 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADDSF 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCcCHHHHHHHHHcCCC
Confidence 79999999999999999987543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.03 E-value=0.0022 Score=49.52 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=22.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+-+.|++|+||||++..+++.+...
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 5699999999999999999988543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.006 Score=47.19 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|.+|+|||++++.+...-
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~~ 29 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQSY 29 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999988653
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.015 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
+++|.|++|+|||++.+.+...-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.011 Score=45.43 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|.+|+|||+++..+...-+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~~f 28 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCENKF 28 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 78999999999999999887543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.92 E-value=0.0062 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
++|.|+=|+|||++++.+++.+...
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred EEEecCCCccHHHHHHHHHhhcccc
Confidence 8899999999999999999998644
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.90 E-value=0.02 Score=47.66 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=26.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
..|+||+|+|||+++..++......+ ..+++++...
T Consensus 63 ~e~~G~~~~GKT~l~l~~~~~~q~~g---~~~vyIDtE~ 98 (269)
T d1mo6a1 63 IEIYGPESSGKTTVALHAVANAQAAG---GVAAFIDAEH 98 (269)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTT---CEEEEEESSC
T ss_pred EEEecCCCcHHHHHHHHHHHHHhcCC---CEEEEEECCc
Confidence 79999999999999988887654332 3455555543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.047 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|+||...|||++++.++-..
T Consensus 43 ~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 43 MLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEeccCchhhHHHHHHHHHHH
Confidence 38999999999999999987654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.87 E-value=0.015 Score=44.53 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|.+|+|||++++.+...-+
T Consensus 7 i~lvG~~~vGKTsli~rl~~~~f 29 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVEDSF 29 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 78999999999999999987544
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0052 Score=47.74 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||+++..+...-
T Consensus 9 I~vvG~~~vGKSSli~~~~~~~ 30 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTNK 30 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999888753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0044 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7999999999999999987643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0023 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+++.|++|+|||+++..+...-+.
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~f~ 28 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQFP 28 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCCC
Confidence 789999999999999998876443
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0058 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||+++..+...-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.0074 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHcCC
Confidence 7899999999999999987643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.75 E-value=0.0028 Score=49.19 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=17.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||+++..+...-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC---
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999998876543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0066 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|.+|+|||++++.+...-+
T Consensus 8 ivviG~~~vGKTsli~~~~~~~f 30 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTNAF 30 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999999887643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.009 Score=46.02 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 789999999999999988654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0033 Score=49.27 Aligned_cols=22 Identities=14% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.||+|+||+|+++.+.+..
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0085 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|.+|+|||++++.+...-+
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~f 28 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 89999999999999999887643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0091 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|.+|+|||++++.+...-
T Consensus 8 I~lvG~~~vGKTsll~~~~~~~ 29 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEKK 29 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7999999999999999987654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.039 Score=42.92 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+++.|++|+|||++++.+...
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999988753
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0034 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.++|.||+|+||||+.+.+.+..
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999998874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.61 E-value=0.056 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+|||+++..++..+
T Consensus 38 ~vi~G~~G~GKT~~~~~la~~~ 59 (277)
T d1cr2a_ 38 IMVTSGSGMGKSTFVRQQALQW 59 (277)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHhh
Confidence 8999999999999999998654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=95.60 E-value=0.0093 Score=48.86 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=29.7
Q ss_pred CCcEEEEEeCCC-CCCHHHHHHHHHHHHhcC-CceEEEEeecCcc
Q 016800 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (382)
Q Consensus 154 ~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 196 (382)
.+++++++||.- .+.+.....+.+++.+.. ....+|+++...+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~ 194 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 194 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 367899999965 577777777777776532 3345677776544
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.58 E-value=0.028 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|+||...|||++.+.++-..
T Consensus 38 ~iiTGpN~~GKSt~lk~i~l~~ 59 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTALIA 59 (224)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhHHHH
Confidence 8999999999999999887654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.019 Score=44.13 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 9 i~vvG~~~vGKTsli~~~~~~~ 30 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDGA 30 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8999999999999999887743
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0038 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+-|+|++|+||||+++.++..+.
T Consensus 5 IgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 5 IGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56999999999999999999874
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.55 E-value=0.0048 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
++|.|++|+|||+++..+...-+
T Consensus 5 ivliG~~~vGKTsli~r~~~~~f 27 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKDCF 27 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 79999999999999999887543
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.52 E-value=0.024 Score=46.88 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhc-CCceEEEEeecCccc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETY-SKVTRFFFICNYISR 197 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~ 197 (382)
+++++|+||.- .+++.....+++++.+. ...+.+|+++.+.+.
T Consensus 168 ~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~ 212 (254)
T d1g6ha_ 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 212 (254)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred CcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence 67899999975 56777777777777553 234567777766544
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.51 E-value=0.011 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 7 i~lvG~~~vGKTsll~~~~~~~~ 29 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQKIF 29 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 78999999999999999887543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.50 E-value=0.0094 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||+++..+...-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHhhCC
Confidence 7899999999999999988653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.49 E-value=0.046 Score=45.18 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|.+|+|||++++.+...
T Consensus 35 I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 899999999999999999754
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=95.47 E-value=0.044 Score=40.52 Aligned_cols=35 Identities=11% Similarity=0.081 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
...+|+|||++.++. ....+...+.+... .+++.+
T Consensus 79 ~~dvI~IDE~QFf~d-~i~~~~~~~~~~g~--~Viv~G 113 (139)
T d2b8ta1 79 ETKVIGIDEVQFFDD-RICEVANILAENGF--VVIISG 113 (139)
T ss_dssp TCCEEEECSGGGSCT-HHHHHHHHHHHTTC--EEEEEC
T ss_pred CcCEEEechhhhcch-hHHHHHHHHHhcCc--eEEEEE
Confidence 567999999999984 45566666665432 345544
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.009 Score=51.49 Aligned_cols=37 Identities=32% Similarity=0.431 Sum_probs=27.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~ 122 (382)
+-|+||||+||||++..+++.+...+. ...++.++++
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~~~g~-~vavlavDps 93 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLIREGL-KVAVIAVDPS 93 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhcCC-ceeeecCCCc
Confidence 899999999999999999988754331 2344555554
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=95.42 E-value=0.021 Score=48.06 Aligned_cols=123 Identities=9% Similarity=0.119 Sum_probs=69.1
Q ss_pred ccCcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHHHhhh
Q 016800 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (382)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 142 (382)
+.-++.....+..+++.++ .++.-|+|+|||.++..+++.+.... ...++.+-+. ..-..++.+.+..+.....
T Consensus 112 ~~~rdyQ~~av~~~l~~~~---~il~~pTGsGKT~i~~~i~~~~~~~~--~~k~Liivp~-~~Lv~Q~~~~f~~~~~~~~ 185 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLVNRR---RILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPT-TALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSE---EEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSS-HHHHHHHHHHHHHHTSCCG
T ss_pred cccchHHHHHHHHHHhcCC---ceeEEEcccCccHHHHHHHHHhhhcc--cceEEEEEcC-chhHHHHHHHHHHhhcccc
Confidence 4457788888888888754 67888999999999888876653221 1234434332 2234555555544421100
Q ss_pred ------cCCCCC------------------CCC---CCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcC-CceEEEEeecC
Q 016800 143 ------GSGQRR------------------GGY---PCPPYKIIILDEADSMTEDAQNALRRTMETYS-KVTRFFFICNY 194 (382)
Q Consensus 143 ------~~~~~~------------------~~~---~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~ 194 (382)
..+... ... ......+||+||+|.+.... +..++.... ...++-++++.
T Consensus 186 ~~~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~~~~~~~f~~VIvDEaH~~~a~~---~~~il~~~~~~~~rlGlTaT~ 262 (282)
T d1rifa_ 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS---ISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp GGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHH---HHHHTTTCTTCCEEEEECSSC
T ss_pred ccceeecceecccccccccceEEEEeeehhhhhcccccCCCCEEEEECCCCCCchh---HHHHHHhccCCCeEEEEEeec
Confidence 000000 000 01256899999999997554 444555443 23445566553
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.036 Score=42.41 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~~f 28 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 78999999999999999887543
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.40 E-value=0.021 Score=47.57 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=27.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
..|+||+|+|||+++..++.....++ ..+++++...
T Consensus 60 tei~G~~~sGKT~l~l~~~~~aqk~g---~~v~yiDtE~ 95 (268)
T d1xp8a1 60 TEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEH 95 (268)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred EEEecCCccchHHHHHHHHHHHHhCC---CEEEEEECCc
Confidence 79999999999999999998875433 3455665543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.39 E-value=0.005 Score=47.97 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=23.7
Q ss_pred HHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHH
Q 016800 74 TNTLETANCPH-MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 74 ~~~l~~~~~~~-lll~Gp~G~GKt~la~~la~~ 105 (382)
.+++..++... ++|.|++|+||||+.+.+...
T Consensus 4 ~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 4 LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp HHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHhccccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444444444 999999999999999888553
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.35 E-value=0.014 Score=48.99 Aligned_cols=33 Identities=39% Similarity=0.687 Sum_probs=23.9
Q ss_pred HHHHHcCCC-Cc-EEEeCCCCCCHHHHHHHHHHHh
Q 016800 74 TNTLETANC-PH-MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 74 ~~~l~~~~~-~~-lll~Gp~G~GKt~la~~la~~l 106 (382)
..+...++. |- +-|.|++|+||||++..+...+
T Consensus 17 ~~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 17 PEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp HHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeECCCCCCHHHHHHHHHHHH
Confidence 334444433 43 4589999999999999888776
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.022 Score=46.35 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=28.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHHHhc-CCceEEEEeecCcc
Q 016800 155 PYKIIILDEAD-SMTEDAQNALRRTMETY-SKVTRFFFICNYIS 196 (382)
Q Consensus 155 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~ 196 (382)
+++++++||.- .+....+..+.+++.+. .....+|+++.+.+
T Consensus 150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~ 193 (231)
T d1l7vc_ 150 AGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193 (231)
T ss_dssp TCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45899999965 56777777777777653 23445677776543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.30 E-value=0.011 Score=50.95 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+-|+||||+||||++..+.+.+..
T Consensus 54 igitG~pGaGKSTli~~l~~~~~~ 77 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLLTA 77 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EeeeCCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999987643
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.30 E-value=0.008 Score=51.12 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.0
Q ss_pred CcEEEeCCCCCCHHHHHHHH
Q 016800 83 PHMLFYGPPGTGKTTTALAI 102 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~l 102 (382)
.++++.|+||||||+++-.-
T Consensus 15 ~~~lI~g~aGTGKTt~l~~r 34 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVITNK 34 (306)
T ss_dssp SEEEECCCTTSCHHHHHHHH
T ss_pred CCEEEEeeCCccHHHHHHHH
Confidence 35899999999999876443
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0054 Score=48.23 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|.+|+|||++++.+...-+
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~~f 34 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYANDAF 34 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHhhCCC
Confidence 79999999999999999887543
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=95.19 E-value=0.014 Score=49.96 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=28.1
Q ss_pred cEEEeCCCCCCHHHHHHH-HHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALA-IAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~-la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (382)
++++.|+||||||+++.. +++.+.........++.+..+. .....++..+..
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~-~aa~~~~~~~~~ 78 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN-KAAREMRERVQS 78 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSH-HHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccH-HHHHHHHHHHHh
Confidence 589999999999987654 3333322222223444443332 234445554444
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.12 E-value=0.011 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=8.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|.+|+|||+++..+...-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999887643
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=95.06 E-value=0.043 Score=46.28 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.3
Q ss_pred CcEEEEEeCCCCCCHHH
Q 016800 155 PYKIIILDEADSMTEDA 171 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~ 171 (382)
+.+++|+||+|.+....
T Consensus 100 ~~~~vViDE~H~~~~~~ 116 (305)
T d2bmfa2 100 NYNLIIMDEAHFTDPAS 116 (305)
T ss_dssp CCSEEEEESTTCCSHHH
T ss_pred ceeEEEeeeeeecchhh
Confidence 66799999999997654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.03 E-value=0.0041 Score=49.41 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|+.|+||||+++.|++.+
T Consensus 12 I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 12 VLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999887
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.01 E-value=0.0068 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|++|+||||++..+.+.+
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999876
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.96 E-value=0.0066 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
++|+|+||+|||+++..++..+..
T Consensus 37 ~~i~G~~G~GKT~~~l~~a~~~~~ 60 (258)
T d2i1qa2 37 TEFAGVFGSGKTQIMHQSCVNLQN 60 (258)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999987743
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.016 Score=49.36 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCCc-EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 81 NCPH-MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 81 ~~~~-lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|- +-|.|++|+||||+++.+...+.
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence 3344 67999999999999999998873
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.0077 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 6 vvllG~~~vGKTSli~r~~~~~f 28 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNKF 28 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 78999999999999998887544
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0076 Score=48.45 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+.|.|++|+||||.++.+++.+...
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~~~ 30 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALCAA 30 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7888999999999999999988544
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.0084 Score=45.48 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|+||+|||++++.+...-
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999988753
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.78 E-value=0.0085 Score=45.75 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
++|.|++|+|||++++.+...-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999987653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.76 E-value=0.011 Score=47.84 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHH
Q 016800 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~ 104 (382)
+..|..+++. + ..+|.|++|+||||+++++..
T Consensus 86 ~~~L~~~l~~-k--t~~~~G~SGVGKSTLiN~L~~ 117 (225)
T d1u0la2 86 IEELKEYLKG-K--ISTMAGLSGVGKSSLLNAINP 117 (225)
T ss_dssp HHHHHHHHSS-S--EEEEECSTTSSHHHHHHHHST
T ss_pred HhhHHHHhcC-C--eEEEECCCCCCHHHHHHhhcc
Confidence 4556665632 2 379999999999999998854
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.01 Score=47.64 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPE 110 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~ 110 (382)
.+.|.|++|+||||.++.+++.+...+
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L~~~g 30 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETLEQLG 30 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 378999999999999999999875443
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.66 E-value=0.011 Score=47.73 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.1
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+..-+.|.|+.|+||||.++.+++.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 333489999999999999999999873
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.65 E-value=0.0079 Score=48.95 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|+|+||+|||+++..++..
T Consensus 29 ~~I~G~~G~GKT~la~~~~~~ 49 (242)
T d1tf7a1 29 TLVSGTSGTGKTLFSIQFLYN 49 (242)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999877654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.61 E-value=0.01 Score=45.93 Aligned_cols=21 Identities=38% Similarity=0.688 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+|||++|..+.+.
T Consensus 17 vl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 17 VLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHc
Confidence 899999999999999988875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.58 E-value=0.011 Score=47.26 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.|.|+.|+||||+++.+.+.+..
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998743
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.53 E-value=0.075 Score=45.39 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=18.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|-|+-|+||||+++.+++.+
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC--
T ss_pred EEEECCcCCCHHHHHHHHHHHh
Confidence 7899999999999999998776
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=94.52 E-value=0.093 Score=44.92 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|-|+-|+||||+++.+++.+.
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEECCccCCHHHHHHHHHHHhc
Confidence 78999999999999999999874
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.45 E-value=0.011 Score=48.48 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=22.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+.|.|+.|+||||+++.+++.+..
T Consensus 5 IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHhh
Confidence 899999999999999999998743
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.39 E-value=0.011 Score=46.72 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHH
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~ 104 (382)
..|.+.|.|+||+||||+++++..
T Consensus 22 ~~~~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHhcC
Confidence 445699999999999999999974
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.015 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 5 i~lvG~~~vGKTsli~r~~~~~f 27 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTKRF 27 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 78999999999999999987543
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.12 E-value=0.01 Score=45.92 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+||.|++|+|||+++..+.+.
T Consensus 18 vli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 899999999999999888764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.06 E-value=0.014 Score=46.42 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+.+.++..+
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhccc
Confidence 48899999999999999998765
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.06 E-value=0.014 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||.|+||||+++.++..+
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 36788999999999999998865
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.98 E-value=0.015 Score=44.78 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|++|+|||+++..+.+.
T Consensus 17 gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 17 GVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHc
Confidence 3999999999999999888776
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.0066 Score=49.70 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
-+.|.|+.|+||||+++.|++.+.
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999873
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.76 E-value=0.019 Score=43.75 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~ 26 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGR 26 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=93.74 E-value=0.051 Score=51.60 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=40.6
Q ss_pred hhhhcCCCCCCcccCcHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 51 WVEKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+.++|+.....++.-|--.+ .....+...++...+++.|.+|+|||+.++.+.+.+
T Consensus 53 ~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 53 DIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp HHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56666665555555553333 455666666665559999999999999999999987
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.73 E-value=0.019 Score=45.02 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=17.5
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+-++|++|+||||+|..+.+
T Consensus 6 IgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 6 IGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45999999999999998854
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.73 E-value=0.18 Score=41.42 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.|..++..+.+.+.++..-+-|++|..|+|||.++...+....
T Consensus 87 ~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~ 129 (264)
T d1gm5a3 87 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNY 129 (264)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHH
Confidence 5777888888888888766789999999999999887776553
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.72 E-value=0.19 Score=40.31 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=69.9
Q ss_pred CCCCCCcccCcHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHH
Q 016800 56 RPKQVKDVAHQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (382)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~-~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 134 (382)
.|..+.. --++...+.+.-..... .....+|.=+.|+|||..+-+++..+...... ..++.+-+.. -...|.+.+
T Consensus 5 ~P~~~~~-~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~-~~~LIv~p~~--l~~~W~~e~ 80 (230)
T d1z63a1 5 EPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENEL-TPSLVICPLS--VLKNWEEEL 80 (230)
T ss_dssp CCCSCSS-CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCC-SSEEEEECST--THHHHHHHH
T ss_pred Cchhhhc-chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccc-cccceecchh--hhhHHHHHH
Confidence 3544442 12455555554322221 11247888899999999988887766433221 2233333322 345565555
Q ss_pred HHHHHhhhcCC----C---C----------------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 016800 135 KTFAAVAVGSG----Q---R----------------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (382)
Q Consensus 135 ~~~~~~~~~~~----~---~----------------~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 191 (382)
..+........ . . .......+..+||+||++.+...... -.+.+.......+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~vvi~~~~~~~~~~~l~~~~~~~vI~DEah~~k~~~s~-~~~~~~~l~a~~r~~LT 159 (230)
T d1z63a1 81 SKFAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTK-IFKAVKELKSKYRIALT 159 (230)
T ss_dssp HHHCTTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSH-HHHHHHTSCEEEEEEEC
T ss_pred HhhcccccceeeccccchhhccCcCEEEeeHHHHHhHHHHhcccceEEEEEhhhcccccchh-hhhhhhhhccceEEEEe
Confidence 54432110000 0 0 00001236789999999998422111 11222233345567777
Q ss_pred ecCccccchhhhc
Q 016800 192 CNYISRIIEPLAS 204 (382)
Q Consensus 192 ~~~~~~l~~~l~s 204 (382)
+++...-...+.+
T Consensus 160 gTPi~n~~~dl~~ 172 (230)
T d1z63a1 160 GTPIENKVDDLWS 172 (230)
T ss_dssp SSCSTTCHHHHHH
T ss_pred cchHHhHHHHHHH
Confidence 7665443333333
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.72 E-value=0.018 Score=44.22 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=18.4
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+.+.|++|+||||++++|..
T Consensus 3 V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999874
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.56 E-value=0.013 Score=49.30 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 81 ~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|-+-++|++|+||||+++++.+.+.
T Consensus 3 k~pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 3 KHPIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHh
Confidence 445589999999999999999988763
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.014 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+-|.||+|+||||+++.++...
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHcCCc
Confidence 48999999999999999987654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.50 E-value=0.022 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|.+|||||+++..+...-
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.019 Score=43.91 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 7 v~liG~~~vGKTsLl~~~~~~~ 28 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVEGQ 28 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8999999999999999987643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.47 E-value=0.02 Score=43.81 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999988754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.32 E-value=0.019 Score=44.36 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=18.2
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+++.|++|+|||++++.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999988754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.025 Score=43.78 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||++++.+...-+
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~~ 32 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDTF 32 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEECCCCcCHHHHHHHHHhCCC
Confidence 89999999999999999887543
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.29 E-value=0.022 Score=47.52 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.+|+|++|+|||+++..++..+.
T Consensus 32 ~~i~G~~G~GKS~l~l~la~~ia 54 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLAAQIA 54 (274)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.24 E-value=0.019 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.++|.|+||+||||+.+++...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.026 Score=43.43 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
++|.|++|+|||++++.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999988643
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=93.12 E-value=0.24 Score=42.20 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|-|+-|+||||+++.+++.+.
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999874
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.09 E-value=0.066 Score=50.94 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=40.4
Q ss_pred hhhhcCCCCCCcccCcHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 51 WVEKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.++|+.....++.-|--.+ .....++..++...+++.|++|+|||..++.+.+.+.
T Consensus 92 ~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 92 MVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp HHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45666665555555543333 4555666666654599999999999999999999873
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.05 E-value=0.3 Score=37.37 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+.|.|.+|+||||+++++...
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 889999999999999998753
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.035 Score=46.65 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=23.0
Q ss_pred CCc-EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 82 CPH-MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 82 ~~~-lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
+|. ++++|.-|+||||++..+|..+..
T Consensus 7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~ 34 (296)
T d1ihua1 7 IPPYLFFTGKGGVGKTSISCATAIRLAE 34 (296)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcChHHHHHHHHHHHHHH
Confidence 345 789999999999999999988754
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=92.89 E-value=0.054 Score=45.13 Aligned_cols=44 Identities=27% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeec
Q 016800 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (382)
Q Consensus 75 ~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~ 121 (382)
.-+..+...-++++|.-|+||||++-.++..+...+ .+++-++.
T Consensus 13 ~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G---~rVllvD~ 56 (279)
T d1ihua2 13 DDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMG---FDVHLTTS 56 (279)
T ss_dssp HHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEES
T ss_pred HHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CcEEEEeC
Confidence 334444433389999999999999999988875432 34444444
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.18 Score=36.68 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=45.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecC-CCcchHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEEeC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vliiDe 163 (382)
-+++||=.+|||+-....++..... +..++.+++. +.+........-....................+..+|+|||
T Consensus 5 ~li~GpMfsGKTt~Li~~~~~~~~~---g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~I~IDE 81 (133)
T d1xbta1 5 QVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE 81 (133)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETTCCC--------------CEEESSGGGGHHHHHTCSEEEESS
T ss_pred EEEEecccCHHHHHHHHHHHHHHHc---CCcEEEEecccccCCcceeeecCCCcceeeeeechhhhhhhhcccceEEeeh
Confidence 4789999999998776666544221 2345555554 22221111100000000000000000000001567999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCceEEEEee
Q 016800 164 ADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (382)
Q Consensus 164 ~d~l~~~~~~~Ll~~le~~~~~~~~Il~~ 192 (382)
++.++ + ...+...+.+. +..+++.+
T Consensus 82 aQFf~-d-l~~~~~~~~~~--~~~Viv~G 106 (133)
T d1xbta1 82 GQFFP-D-IVEFCEAMANA--GKTVIVAA 106 (133)
T ss_dssp GGGCT-T-HHHHHHHHHHT--TCEEEEEC
T ss_pred hHHHH-H-HHHHHHHHHhc--CCcEEEEE
Confidence 99996 3 33444555543 23345544
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=92.82 E-value=0.089 Score=50.11 Aligned_cols=57 Identities=18% Similarity=0.303 Sum_probs=39.2
Q ss_pred hhhhcCCCCCCcccCcHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 51 WVEKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.+.|+.....++.-|--.+ .....++..++...+++.|.+|+|||+.++.+.+++.
T Consensus 58 ~~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~ 116 (710)
T d1br2a2 58 IIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLA 116 (710)
T ss_dssp HHHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34555555555554443333 4555666666554599999999999999999999874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.81 E-value=0.017 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
.+++.|++|+|||++++.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999998754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.75 E-value=0.023 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 016800 83 PHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~ 104 (382)
+.+.|.|.||+||||+++++..
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999864
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.69 E-value=0.67 Score=37.97 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
++.+.|..|+||||++.++....
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHc
Confidence 58899999999999999997654
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.66 E-value=0.015 Score=47.44 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+.|.||+|+||||+++.++...
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCc
Confidence 48999999999999999998754
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=92.49 E-value=0.029 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
.+-|.||+|+||||+++.++...
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCc
Confidence 48899999999999999997643
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.037 Score=44.09 Aligned_cols=20 Identities=40% Similarity=0.508 Sum_probs=17.6
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+-++|++|+||||+++.+.+
T Consensus 6 IgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHH
Confidence 56899999999999998764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.43 E-value=0.03 Score=43.56 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 016800 83 PHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~ 104 (382)
+.+-|.|+||+||||+.+++..
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEE
T ss_pred CeEEEECCCCCCHHHHHHHHhC
Confidence 4588999999999999998754
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.41 E-value=0.23 Score=43.63 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
++.+.|.||+|||++++++..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G 78 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRG 78 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 499999999999999999964
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.34 E-value=0.021 Score=44.37 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=17.5
Q ss_pred EEEeCCCCCCHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIA 103 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la 103 (382)
+++.|++|+|||++++.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEETTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 9999999999999998764
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=92.23 E-value=0.099 Score=49.99 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=38.5
Q ss_pred hhhhcCCCCCCcccCcHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 51 WVEKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 51 ~~~k~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
+..+|+.....++.-|--.+ .....++..++...+++.|++|+|||..++.+.+.+
T Consensus 61 ~~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l 118 (730)
T d1w7ja2 61 IINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF 118 (730)
T ss_dssp HHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555555545554443322 455666666665559999999999999999999887
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.22 E-value=0.92 Score=35.39 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
+.+.|-++.||||++.+|...
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=92.22 E-value=1.2 Score=34.37 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=27.2
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCceEEEEeecCcccc
Q 016800 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRI 198 (382)
Q Consensus 155 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 198 (382)
+.-+++||-.+.+.++....+....+.... .+|++.|..+.+
T Consensus 91 D~allVVda~~G~~~QT~~~~~~a~~~~~~--~iIv~iNK~D~~ 132 (196)
T d1d2ea3 91 DGCILVVAANDGPMPQTREHLLLARQIGVE--HVVVYVNKADAV 132 (196)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCC--CEEEEEECGGGC
T ss_pred CeEEEEEEcCCCCchhHHHHHHHHHHhcCC--cEEEEEeccccc
Confidence 677999999888887665555544443222 256666777654
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=92.22 E-value=0.099 Score=50.42 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=38.5
Q ss_pred hhcCCCCCCcccCcHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 53 EKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 53 ~k~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+.|+.....++.-|--.+ .....++..++...+++.|.+|+|||..++.+.+.+.
T Consensus 92 ~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 92 LAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp HHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445544555554443333 4556666676655599999999999999999998874
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.03 E-value=0.027 Score=45.51 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.|-.+|+|.-|+||||+++.+.+..
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence 4558999999999999999998863
|
| >d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: delta prime subunit species: Escherichia coli [TaxId: 562]
Probab=91.93 E-value=0.61 Score=33.14 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=58.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----cCCCHHHHH----HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHhhc--CCCh
Q 016800 287 GLFAVCRSGDFDLANKEVNNIIA----EGYPASLLL----SQLFDVVVETEDISDEQQARICKCLAEVDKCLVD--GADE 356 (382)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~l~~----~g~~~~~i~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~~ 356 (382)
.++..+...+..+.+.|+..++. ...+...++ ..+..++.. .++...+.+.++.+..+.+.+.. |+|.
T Consensus 24 sLl~~ln~e~~~~~L~WL~~lL~DalK~q~g~~~~vN~D~~~li~~la~--~~s~~~L~~~~~~~~~~r~~L~~~~~lN~ 101 (123)
T d1a5ta1 24 SLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELAN--HLSPSRLQAILGDVCHIREQLMSVTGINR 101 (123)
T ss_dssp GGHHHHCSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHCCSSH
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHhcCchhhccHhHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 34444545556666666665543 111111111 122333333 69999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHHccCC
Q 016800 357 YLQLLDVASNVIRAVCNMP 375 (382)
Q Consensus 357 ~l~l~~l~~~l~~~~~~~~ 375 (382)
++.++.+++++-..+++++
T Consensus 102 ELlL~~~Ll~we~~l~~~~ 120 (123)
T d1a5ta1 102 ELLITDLLLRIEHYLQPGV 120 (123)
T ss_dssp HHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 9999999999998888875
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.91 E-value=0.16 Score=37.46 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=17.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
=+++||=.+|||+-....++..
T Consensus 10 ~lI~GpMfSGKTteLi~~~~~~ 31 (141)
T d1xx6a1 10 EVIVGPMYSGKSEELIRRIRRA 31 (141)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEeccccHHHHHHHHHHHHh
Confidence 4889999999998776666544
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=0.022 Score=44.15 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.5
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHH
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~ 104 (382)
.+.+.|.|.|++|||++.+++..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34599999999999999988743
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.80 E-value=0.044 Score=42.17 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~ 105 (382)
.+.|.|.+|+||||+++++...
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999753
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=91.78 E-value=0.1 Score=50.35 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=39.0
Q ss_pred hhhcCCCCCCcccCcHHHH--HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 016800 52 VEKYRPKQVKDVAHQEEVV--RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 52 ~~k~~p~~~~~~~g~~~~~--~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~ 107 (382)
.++|+.....++.-|--.+ .....+...++...+++.|++|+|||..++.+.+.+.
T Consensus 89 ~~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 89 IAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4555555555554443333 4566666666644599999999999999999999874
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.77 E-value=0.041 Score=43.70 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=17.2
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~ 104 (382)
+-++|+.|+||||+++.+.+
T Consensus 5 IgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999997753
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=91.65 E-value=0.13 Score=40.49 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=16.5
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIA 103 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la 103 (382)
++++.-|+|+|||.+.....
T Consensus 42 ~vlv~apTGsGKT~~~~~~~ 61 (206)
T d1oywa2 42 DCLVVMPTGGGKSLCYQIPA 61 (206)
T ss_dssp CEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCcchhhhhh
Confidence 69999999999998765443
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.64 E-value=0.047 Score=42.83 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=17.4
Q ss_pred EEEeCCCCCCHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAI 102 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~l 102 (382)
+++.|.+|+|||++++.+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999999998
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.066 Score=41.23 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|++|+|||+++..+...-+
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~~f 30 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTGSY 30 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHhCCC
Confidence 89999999999999998887543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.15 E-value=1.9 Score=34.05 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.4
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
.|-+-+.|.+++||||++.++....
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCccHHHHHHHHHhhc
Confidence 3458899999999999999998764
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.02 E-value=0.072 Score=47.47 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=28.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCC
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (382)
.|+++.|++|+|||+++..+...+... +..++.+++..
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~---g~~~iiiD~kg 88 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNG 88 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETT
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhC---CCCEEEEeCCh
Confidence 479999999999999998877766433 23556566653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.99 E-value=0.069 Score=43.38 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+-|+|+.|+||||+|+.|+...
T Consensus 4 IgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999998764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.66 E-value=0.02 Score=46.38 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~ 105 (382)
.+|.|++|+||||+++++...
T Consensus 100 ~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 100 TVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp EEEEESHHHHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHhhccH
Confidence 689999999999999988643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.55 E-value=0.068 Score=42.92 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|++|+|||++++.+...-
T Consensus 9 illlG~~~vGKTsll~~~~~~~ 30 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMRILH 30 (221)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999886543
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.28 E-value=0.074 Score=41.47 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLF 107 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~ 107 (382)
+++.|.+|+|||++++.+...-+
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~ 27 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHG 27 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 89999999999999999976643
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.19 E-value=0.027 Score=44.33 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
-+|+||.|+|||++..++.-.+.+.
T Consensus 27 tvi~G~NGsGKStil~Ai~~~L~g~ 51 (222)
T d1qhla_ 27 TTLSGGNGAGKSTTMAAFVTALIPD 51 (222)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5889999999999999999877543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.16 E-value=0.023 Score=42.93 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+.|.|.||+|||++++++...-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998653
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=89.50 E-value=1.5 Score=36.30 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=17.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l 106 (382)
..+|.=+.|+|||-.+-++...+
T Consensus 81 g~iLaDemGlGKT~qaia~l~~l 103 (298)
T d1z3ix2 81 GCIMADEMGLGKTLQCITLIWTL 103 (298)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCHHHHHHHHHHHH
Confidence 37888889999998776665554
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.24 E-value=0.12 Score=40.09 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
+++.|..|+|||++++.+...-
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~ 26 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIH 26 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 8999999999999999887654
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=89.15 E-value=0.17 Score=41.62 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
+.|+|.-|+||||++-.++..+...
T Consensus 4 Iai~gKGGvGKTT~a~nLA~~LA~~ 28 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhC
Confidence 5679999999999999999998644
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.99 E-value=1.1 Score=36.67 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=21.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 82 ~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
..|+-|.|..|+||||++.++....
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~ 30 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYT 30 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999998765
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=88.40 E-value=0.13 Score=40.74 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.4
Q ss_pred cEEEeCCC-CCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPP-GTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~-G~GKt~la~~la~~l~~~ 109 (382)
.++++|.. |+|||+++-.++..+...
T Consensus 3 ~~~i~gt~~GVGKTtvs~~La~aLa~~ 29 (224)
T d1byia_ 3 RYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 48999994 999999999999998544
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.28 E-value=0.15 Score=42.43 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=24.0
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 78 ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 78 ~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
--++....+|.|++|+|||+++..+++..
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 34455569999999999999999999865
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.55 E-value=0.12 Score=43.39 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
-+|+||.|+|||++..|+.-.+
T Consensus 27 nvlvG~NgsGKS~iL~Ai~~~l 48 (308)
T d1e69a_ 27 TAIVGPNGSGKSNIIDAIKWVF 48 (308)
T ss_dssp EEEECCTTTCSTHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5999999999999999996543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=86.43 E-value=2.7 Score=31.57 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAH 104 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~ 104 (382)
++-+.|.|++||||+.+++..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 378999999999999999974
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=85.91 E-value=0.22 Score=41.54 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCC
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGP 109 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~ 109 (382)
.+.++|.-|+||||++..++..+...
T Consensus 4 ~IaisgKGGVGKTT~a~NLA~~LA~~ 29 (289)
T d2afhe1 4 QCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36679999999999999998887533
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.88 E-value=0.82 Score=36.50 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=29.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHH
Q 016800 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (382)
Q Consensus 84 ~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (382)
++++.+|+|+|||.++...+.....++ ..++.+-+.. .-..++.+.+..+
T Consensus 60 ~~~i~apTGsGKT~~~~~~~~~~~~~~---~rvliv~Pt~-~La~Q~~~~l~~~ 109 (237)
T d1gkub1 60 SFAATAPTGVGKTSFGLAMSLFLALKG---KRCYVIFPTS-LLVIQAAETIRKY 109 (237)
T ss_dssp CEECCCCBTSCSHHHHHHHHHHHHTTS---CCEEEEESCH-HHHHHHHHHHHHH
T ss_pred CEEEEecCCChHHHHHHHHHHHHHHhc---CeEEEEeccH-HHHHHHHHHHHHH
Confidence 699999999999987765555443332 3444444432 2233444444443
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.73 E-value=4 Score=33.39 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=20.7
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHH
Q 016800 80 ANCPHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 80 ~~~~~lll~Gp~G~GKt~la~~la~~ 105 (382)
++...+++.|++|+|||+++..++..
T Consensus 66 g~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 66 GRGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp BTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHh
Confidence 34445899999999999998877754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.03 E-value=0.22 Score=43.80 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 016800 85 MLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l 106 (382)
-+|+||.|+|||++..++.-.+
T Consensus 28 ~~i~G~NGsGKS~ileAi~~~l 49 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAISFVL 49 (427)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4899999999999999997544
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.28 E-value=3.1 Score=33.92 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.4
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 016800 78 ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (382)
Q Consensus 78 ~~~~~~~lll~Gp~G~GKt~la~~la~~l 106 (382)
--++...+++.|++|+|||+++..+++..
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33444459999999999999999998774
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.07 E-value=0.4 Score=33.88 Aligned_cols=24 Identities=4% Similarity=0.170 Sum_probs=22.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 016800 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~la~~l~~ 108 (382)
++|+|-+|+||+++|+++...++.
T Consensus 9 i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 9 IVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999988865
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=84.06 E-value=1.3 Score=38.59 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceEEeecCCCcchHHHHHHHHHHH
Q 016800 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (382)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~Gp~G~GKt~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (382)
.|+.+++.+.+.+..|. .+.++.|-+|+|||.++..+.+... ..++.+.+ +......+.+.+..+.
T Consensus 15 DQP~aI~~l~~~l~~g~-~~q~l~GltGS~ka~~iA~l~~~~~------rp~LVVt~-n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGV-KHQTLLGATGTGKTFTISNVIAQVN------KPTLVIAH-NKTLAGQLYSELKEFF 80 (413)
T ss_dssp THHHHHHHHHHHHHHTC-SEEEEEECTTSCHHHHHHHHHHHHT------CCEEEECS-SHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhcCC-CcEEEeCCCCcHHHHHHHHHHHHhC------CCEEEEeC-CHHHHHHHHHHHHHHc
Confidence 37888999999998775 3688999999999999999988873 33444433 3333444555555543
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.89 E-value=3.4 Score=33.70 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 016800 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (382)
Q Consensus 83 ~~lll~Gp~G~GKt~la~~la~~ 105 (382)
..++|.|++|+|||+++..+...
T Consensus 68 Qr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 68 QRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHT
T ss_pred ceEeeccCCCCChHHHHHHHHhh
Confidence 34889999999999999876544
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.71 E-value=0.19 Score=42.30 Aligned_cols=17 Identities=47% Similarity=0.784 Sum_probs=15.1
Q ss_pred EEEeCCCCCCHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALA 101 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~ 101 (382)
.||+|.+||||||+...
T Consensus 17 alffGLSGTGKTTLs~~ 33 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLSTD 33 (318)
T ss_dssp EEEEECTTSCHHHHTCB
T ss_pred EEEEccCCCCccccccC
Confidence 79999999999998754
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.97 E-value=0.47 Score=40.22 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=26.3
Q ss_pred CCCcccC----cHHHHH----HHHHHHHcCCCCcEEEeCCCCCCHHHHH
Q 016800 59 QVKDVAH----QEEVVR----VLTNTLETANCPHMLFYGPPGTGKTTTA 99 (382)
Q Consensus 59 ~~~~~~g----~~~~~~----~l~~~l~~~~~~~lll~Gp~G~GKt~la 99 (382)
.|+.+.+ |+++.. -+.+.+-.|....++-||+.|+|||++.
T Consensus 45 ~FD~vf~~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 45 AFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp ECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred ECCEEECCCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceec
Confidence 4554443 444443 2333344565445999999999999996
|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.63 E-value=0.29 Score=41.74 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=19.8
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHH
Q 016800 75 NTLETANCPHMLFYGPPGTGKTTTAL 100 (382)
Q Consensus 75 ~~l~~~~~~~lll~Gp~G~GKt~la~ 100 (382)
+.+.+|....++-||+.|+|||++..
T Consensus 78 ~~~~~G~n~~i~aYGqTGSGKTyTm~ 103 (330)
T d1ry6a_ 78 DLYENGCVCSCFAYGQTGSGKTYTML 103 (330)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCCeEEEeeeccccccceeee
Confidence 44555664448999999999999874
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=82.20 E-value=0.26 Score=41.18 Aligned_cols=16 Identities=50% Similarity=0.839 Sum_probs=14.5
Q ss_pred EEEeCCCCCCHHHHHH
Q 016800 85 MLFYGPPGTGKTTTAL 100 (382)
Q Consensus 85 lll~Gp~G~GKt~la~ 100 (382)
-+|.|.+||||||+..
T Consensus 17 alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 17 AVFFGLSGTGKTTLST 32 (313)
T ss_dssp EEEECSTTSSHHHHHC
T ss_pred EEEEccCCCCccccee
Confidence 6999999999999874
|
| >d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Histone-fold superfamily: Histone-fold family: TBP-associated factors, TAFs domain: TAF(II)62 species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.20 E-value=2.7 Score=26.11 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=40.4
Q ss_pred HHHHHHHhCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhc-CCCCChhhHhhhh
Q 016800 223 VLHICNEEGL-NLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277 (382)
Q Consensus 223 l~~~~~~~~~-~~~~~~~~~l~~~s~gdlr~a~~~l~~~~~~~-~~~It~~~v~~~~ 277 (382)
++.+++.-|+ .++++++..|++-..--++..++...+....+ ...+|.+||..++
T Consensus 12 ik~iAeS~Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~AL 68 (70)
T d1tafb_ 12 MKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHH
Confidence 3444677898 48999999999988777777776665555544 4678888887654
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.12 E-value=0.35 Score=40.59 Aligned_cols=17 Identities=47% Similarity=0.788 Sum_probs=15.1
Q ss_pred EEEeCCCCCCHHHHHHH
Q 016800 85 MLFYGPPGTGKTTTALA 101 (382)
Q Consensus 85 lll~Gp~G~GKt~la~~ 101 (382)
.||.|-+||||||+...
T Consensus 17 alfFGLSGTGKTTLs~d 33 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLSAD 33 (323)
T ss_dssp EEEECCTTSSHHHHHCC
T ss_pred EEEEccCCCCcccceeC
Confidence 68999999999999843
|