Citrus Sinensis ID: 016815

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MRKRKGSKAVHDPETLISKSKTLDPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERDESLLGDEDSLGDEDYNEASENSGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIISSTSAEETNELGRQRSEQFATAVNDEENQQLAWRQSITVEVANKDQQQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEEEEEccccccccEEEEEcccHHHHHHHHccccccccccccccccEEEEEEEEccccHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccEEEEEcHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHcccHHHHcccccccccccccccccccEEEccccccccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccccEEEEcccccHHHHHHcccccccccEEcccccccEEEEEEEccccHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHccccHHccccEEEEEcHHHHHHHccccccccccEEEEcccccccccccccccccccHccccHHHccccHHccccccccccHHHHccccccccccccccccccccEEEcccHHHHcccccEEcccccccccccccccccccccccccccHHccccccccHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHccccEEEcc
Coil and Loop (DISEMBL)
mrkrkgskavhdpetlisksktldpvkddfeeEDEEQKAKDQQKGFFACYLLtslcprfkghtyigftvnprrrirqhngeircgavrtkkrrpwEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMlnlpnweslniKVNYFSTkyskhssscpslpehmKVQVrsmdelpcyterdesllgdedslgdedyneasensgsleetcgdvtinfssdysfsIYEAADEQCGqfkqygneqprdssclevncqqpfgllsslettapiisstsaEETNELGRQRSEQFATAVNDEENQQLAWRQSITVEVANkdqqqvqsstglpnvevvdlltpspncremsyskkrrvsglypviidlt
Flexible Loop (DISEMBL)
mrkrkgskavhdpetlisksktldpvKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIgftvnprrrirqhngeircgavrtkkrrpwEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSkhssscpslpeHMKVQVRSMDELPCYTERDESLLGDEDSLGDEDYNEAsensgsleetcGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIISSTSAEETNELGRQRSEQFATAVNDEENQQLAWRQSITVEVANKDQQqvqsstglpnvevvdlltpspncremsyskkrrvsglypviidlt
Low Complexity Region (SEG)
MRKRKGSKAVHDPETLISKSKTLDPVkddfeeedeeqkakdqqkGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERdesllgdedslgdedYNEASENSGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIISSTSAEETNELGRQRSEQFATAVNDEENQQLAWRQSITVEVANKDQQQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT
Disordered region (IsUnstruct)
********************************************GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKY***********************************************************CGDVTINFSSDYSFSIYEAADEQCGQFKQY*********CLEVNCQQPFGLLS********************************************************************VVDLL****************VSGLYPVII***
Disordered Region (DISOPRED)
*********************************************FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP**********************IKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMD***************************SENSGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFK********************FGL**SL*****************************************************************EVVDLL******************GLYPVIIDLT
Disordered Region (DISEMBL)
************PETLISKSKTLDPV***************QQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFST***********LPEHMKVQVRSMDELPCYTERDESLLGDEDSLGD*************EETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIISST**************QFATAVNDEENQQLAWRQSITVEVANKDQQQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT
Disordered Region (DISPRO)
*****************************************QQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDEL*******ESLLGDEDSLGDEDYNEASENSGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSL**********************SEQFATAVN************************VQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKRKGSKAVHDPETLISKSKTLDPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERDESLLGDEDSLGDEDYNEASENSGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIISSTSAEETNELGRQRSEQFATAVNDEENQQLAWRQSITVEVANKDQQQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q8BX32	270	Structure-specific endonu	yes	no	0.361	0.511	0.425	2e-28
Q5PQP5	271	Structure-specific endonu	yes	no	0.361	0.509	0.418	8e-28
A7STV9	270	Structure-specific endonu	N/A	no	0.369	0.522	0.405	7e-26
Q9BQ83	275	Structure-specific endonu	yes	no	0.311	0.432	0.441	1e-25
Q32PI0	267	Structure-specific endonu	yes	no	0.361	0.516	0.418	1e-25
Q0IH86	282	Structure-specific endonu	N/A	no	0.335	0.453	0.410	2e-24
Q5TXB2	273	Structure-specific endonu	yes	no	0.329	0.461	0.431	4e-24
Q4CTY5	530	Structure-specific endonu	N/A	no	0.431	0.311	0.358	8e-24
B3P230	294	Structure-specific endonu	N/A	no	0.397	0.517	0.395	8e-24
Q9VN41	297	Structure-specific endonu	yes	no	0.387	0.498	0.385	2e-23

>sp|Q8BX32|SLX1_MOUSE Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 3/141 (2%)

Query: 46  FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGF 104
           FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL I+GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGF 69

Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
           P+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W  L + + +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRW 129

Query: 165 FSTKYSKHSSSCPSLPEHMKV 185
               +      CP+ P HM +
Sbjct: 130 LRPDFRH--ELCPAPPAHMPI 148

Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q5PQP5|SLX1_RAT Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Slx1b PE=2 SV=1

 Score =  125 bits (313), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 3/141 (2%)

Query: 46  FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGF 104
           FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL ++GF
Sbjct: 10  FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGF 69

Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
           P+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W  L + V +
Sbjct: 70  PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRW 129

Query: 165 FSTKYSKHSSSCPSLPEHMKV 185
               +      CP+ P HM +
Sbjct: 130 LRPDFRH--ELCPAPPPHMPI 148

Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A7STV9|SLX1_NEMVE Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/143 (40%), Positives = 83/143 (58%), Gaps = 2/143 (1%)

Query: 45  GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKRRPWEMVLCIYG 103
           GF   YLL  + P+FKGHTYIG+TVNP RRI+QHNG + + GA +T +++PW M+L ++G
Sbjct: 9   GFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVHG 68

Query: 104 FPTNVSALQFEWAWQHPMESLAVRQAAATFKSFS-GVANKIKLAFTMLNLPNWESLNIKV 162
           FP ++ ALQFEWAWQ P  S  ++ AA   K     V    ++   +L +  W  L + +
Sbjct: 69  FPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNRLPLHI 128

Query: 163 NYFSTKYSKHSSSCPSLPEHMKV 185
            +   +Y          P HM V
Sbjct: 129 RWLMREYEMEFDPRCLPPFHMTV 151

Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.

Nematostella vectensis (taxid: 45351)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9BQ83|SLX1_HUMAN Structure-specific endonuclease subunit SLX1 OS=Homo sapiens GN=SLX1A PE=1 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 1/120 (0%)

Query: 46  FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGF 104
           FF  YLL  L PR++G  Y+GFTVN  RR++QHNG   + GA RT  R PWEMVL ++GF
Sbjct: 13  FFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGF 72

Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
           P++V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L + + +
Sbjct: 73  PSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRW 132

Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q32PI0|SLX1_BOVIN Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=SLX1A PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 81/141 (57%), Gaps = 3/141 (2%)

Query: 46  FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGF 104
           FF  YLL  L PR +G  Y+GFTVNP RR++QHNG   + GA RT  R PWEMVL ++GF
Sbjct: 6   FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65

Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
           P+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L + + +
Sbjct: 66  PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125

Query: 165 FSTKYSKHSSSCPSLPEHMKV 185
               + +    CP  P HM +
Sbjct: 126 LRADFRQ--DLCPPPPPHMPL 144

Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q0IH86|SLX1_XENLA Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=slx1a PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 44  KGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIY 102
           +GF+  YLL    P++KG  YIGFTVNP RRI+QHNG + + GA +T  R PW+MVL ++
Sbjct: 6   EGFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLIVH 65

Query: 103 GFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKV 162
           GFP +++AL+FEWAWQHP  S  +       K  S     + +   ML +  W  L + +
Sbjct: 66  GFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPLTL 125

Query: 163 NYFSTKYSK 171
            +   +Y +
Sbjct: 126 RWLRQEYRR 134

Catalytic subunit of the slx1-slx4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5TXB2|SLX1_ANOGA Structure-specific endonuclease subunit SLX1 homolog OS=Anopheles gambiae GN=AGAP002259 PE=3 SV=3

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 6/132 (4%)

Query: 46  FFACYLLTSLCP--RFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIY 102
           F+  YLL S  P  +F G TYIG+TV+P RRI+QHN GE   GA RT  R PW MVL ++
Sbjct: 10  FYGVYLLVSKSPNPKFAGRTYIGYTVDPNRRIKQHNRGEDAGGARRTSNRGPWTMVLIVH 69

Query: 103 GFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVAN---KIKLAFTMLNLPNWESLN 159
           GFP N+SAL+FEWAWQ P  S  ++Q     K     +N     ++   ML +  W  L 
Sbjct: 70  GFPNNISALRFEWAWQQPRVSRRLKQMPELQKKLRKESNFEYNFRILTEMLRMGPWNRLP 129

Query: 160 IKVNYFSTKYSK 171
           + V +F+ ++ +
Sbjct: 130 LVVRWFADEFHR 141

Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.

Anopheles gambiae (taxid: 7165)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q4CTY5|SLX12_TRYCC Structure-specific endonuclease subunit SLX1 homolog 2 OS=Trypanosoma cruzi (strain CL Brener) GN=Tc00.1047053511881.30 PE=3 SV=1

 Score =  111 bits (278), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 8/173 (4%)

Query: 46  FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKR-RPWEMVLCIYGF 104
           F   YLLTSL P+  G  YIG+TV+P RR+RQHNGEI  GA RTK+R RPWE++ C+ GF
Sbjct: 5   FHCVYLLTSLDPQCAGEYYIGYTVDPIRRLRQHNGEIVSGAWRTKRRGRPWELLCCVSGF 64

Query: 105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
             +  AL+FEW WQHP +S  ++      +    +   + +   +L    +  L + ++ 
Sbjct: 65  GEDRIALKFEWCWQHPTKSTRLKTQMTQLRGVHRLPYAVGVLHLLLRADLFARLQLTLHI 124

Query: 165 FSTKY-----SKHSSSCPSLPEHMKVQVRSMDELPCYTERDESLLGDEDSLGD 212
           F  ++     ++     PS+P  +   +  ++E+    ER  SL  D  S GD
Sbjct: 125 FEPEHVGRVVAELQGRVPSIPPLVATSLLRIEEIT--KERFMSLYLDGVSGGD 175

Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.

Trypanosoma cruzi (strain CL Brener) (taxid: 353153)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|B3P230|SLX1_DROER Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila erecta GN=slx1 PE=3 SV=2

 Score =  111 bits (278), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 95/177 (53%), Gaps = 25/177 (14%)

Query: 22  TLDPVKDDFEEEDEEQKAKDQQKGFFACYLLTS--LCPRFKGHTYIGFTVNPRRRIRQHN 79
           + DP +D   E+ EE  A   +  F+  YLL S  L PRF+G  Y+GFTVNP+RRIRQHN
Sbjct: 3   SYDP-QDTASEQQEETVA--LKGHFYGVYLLCSQSLDPRFRGKCYVGFTVNPKRRIRQHN 59

Query: 80  -GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG 138
            G    GA +T +R PW MV+ ++GFP N  ALQFEWAWQ P  SL+ R      K +  
Sbjct: 60  LGCDFGGARKTSRRGPWLMVMIVHGFPNNTVALQFEWAWQQP--SLSTR-----LKMYPE 112

Query: 139 VANKI----------KLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKV 185
           +  K+          ++   ML +  W  L + V +  T Y +  +    LP HM +
Sbjct: 113 LKRKLPRETFFDYNFRILSHMLGVGPWNRLPLSVRWLETDYERPFNM--PLPNHMDI 167

Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.

Drosophila erecta (taxid: 7220)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VN41|SLX1_DROME Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila melanogaster GN=slx1 PE=1 SV=3

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 95/171 (55%), Gaps = 23/171 (13%)

Query: 29  DFEEEDEEQKAKDQQKG-FFACYLLTS--LCPRFKGHTYIGFTVNPRRRIRQHN-GEIRC 84
           D ++   +Q+     KG F+  YLL S  L PR++G  Y+GFTVNP+RRIRQHN G    
Sbjct: 5   DPQDTASQQEESVALKGHFYGVYLLCSQSLDPRYRGKCYVGFTVNPKRRIRQHNLGCDFG 64

Query: 85  GAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKI- 143
           GA +T ++ PW MV+ ++GFP N  ALQFEWAWQ P  SL+ R      K +  +  K+ 
Sbjct: 65  GARKTSRKGPWLMVMIVHGFPNNTVALQFEWAWQQP--SLSTR-----LKMYPELKRKLP 117

Query: 144 ---------KLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKV 185
                    ++   ML +  W  L + V +  T Y +  S   +LP+HM++
Sbjct: 118 RETFFDYNFRILSNMLGVGPWNRLPLTVRWLETDYERPFSK--ALPKHMEI 166

Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
255553347	413	nuclease, putative [Ricinus communis] gi	0.871	0.806	0.475	1e-90
359479058	364	PREDICTED: structure-specific endonuclea	0.882	0.925	0.498	9e-87
449454983	395	PREDICTED: uncharacterized protein LOC10	0.863	0.835	0.486	4e-84
356537639	380	PREDICTED: structure-specific endonuclea	0.939	0.944	0.486	8e-84
224145473	207	predicted protein [Populus trichocarpa]	0.513	0.946	0.704	1e-80
224124772	192	predicted protein [Populus trichocarpa]	0.492	0.979	0.729	7e-79
42569467	368	GIY-YIG catalytic domain-containing prot	0.903	0.937	0.473	4e-78
297745781	346	unnamed protein product [Vitis vinifera]	0.591	0.653	0.609	6e-78
297826441	383	endo/excinuclease amino terminal domain-	0.916	0.913	0.445	7e-74
326492143	439	predicted protein [Hordeum vulgare subsp	0.439	0.382	0.702	7e-70

>gi|255553347|ref|XP_002517715.1| nuclease, putative [Ricinus communis] gi|223543113|gb|EEF44647.1| nuclease, putative [Ricinus communis]

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 200/421 (47%), Positives = 242/421 (57%), Gaps = 88/421 (20%)

Query: 31  EEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK 90
           E +   Q+ +++ KGF+ACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIR GA RTK
Sbjct: 12  ERQSSAQEDEEEGKGFYACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRSGAFRTK 71

Query: 91  KRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTML 150
           KRRPWEMV CIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLA+TML
Sbjct: 72  KRRPWEMVFCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAYTML 131

Query: 151 NLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERDESLL---GDE 207
           NL  W+SLNI VNYFSTKYS  S++CPSLPEHMK+QV  + ELPCY E  ES L     E
Sbjct: 132 NLSAWQSLNITVNYFSTKYSILSAACPSLPEHMKIQVCPVVELPCYKETGESSLECQDAE 191

Query: 208 DSLGD--------------------------------------------------EDYNE 217
           D   D                                                  E+YNE
Sbjct: 192 DGFDDKENYENTTSESGAVKGKTVEFQSQSLDKFPDFNRGEEIAFEGQDSNSNKDEEYNE 251

Query: 218 ASENSGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQP--RDSS-----CLE 270
            S+ +G+L++   D     SSD S +  +   E+ G  + Y    P  +++S       +
Sbjct: 252 VSQKNGTLDQIRTDAFGQISSDNSHTD-DWTCEKFGSCEDYSTRHPSLKNTSADYPPAPK 310

Query: 271 VNCQQPFGL---------LSSLETTAPIISSTSAEETNELGRQRSEQFATAVNDEENQQL 321
           V+C +PFG           SSL T  PI  +++ +E               +N+  +   
Sbjct: 311 VDCARPFGFPTSNSLVRTASSLCTGFPISETSNGDEL------------MLINNSVSDLG 358

Query: 322 AWRQSITVEVANKDQQQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDL 381
           +    I     +KD+   Q       +EV+DLL+PSP CR MS  KKRR   + P IIDL
Sbjct: 359 SRNGKILTGKDDKDKPIPQ------EIEVIDLLSPSPECRIMSSRKKRRFLTVCPQIIDL 412

Query: 382 T 382
           T
Sbjct: 413 T 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479058|ref|XP_002276725.2| PREDICTED: structure-specific endonuclease subunit SLX1 homolog 2-like [Vitis vinifera]

 Score =  326 bits (836), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 181/363 (49%), Positives = 230/363 (63%), Gaps = 26/363 (7%)

Query: 33  EDEEQKAKDQQKG--FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK 90
           E  E+    ++KG  FFACYLL SL PR KGH+YIGFTVNPRRRIRQHNGEI CGA +TK
Sbjct: 9   EISEETLNSEEKGDDFFACYLLASLSPRHKGHSYIGFTVNPRRRIRQHNGEITCGAWKTK 68

Query: 91  KRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTML 150
           ++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR+AAA FKS SG+ANKIKLA+TM 
Sbjct: 69  RKRPWEMVLCIYGFPTNVSALQFEWAWQHPTESLAVRKAAAGFKSLSGIANKIKLAYTMF 128

Query: 151 NLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERDESLLGDEDSL 210
            LP W+SLN+ VN+FSTKY+KHS+ CP LPEHM+VQV  MDELPCY+  D+S    +++ 
Sbjct: 129 TLPAWQSLNLTVNFFSTKYTKHSAGCPILPEHMRVQVSPMDELPCYSGSDQSFF--DNAR 186

Query: 211 GDEDYNEASENSGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLE 270
           GDE   E  E   S +            D   +  E A EQ G  +++G  QP DS   E
Sbjct: 187 GDEK-EELGERGSSSD----------GFDQVIAHEETALEQFGWIEEHGLRQPGDSPSPE 235

Query: 271 -VNC---------QQPFGLLSSL-ETTAPIISSTSAEETNELGRQRSEQFATAVNDEENQ 319
            V+C         +QP  L +S  E  +P     S   T+    + +    T+   +EN+
Sbjct: 236 VVHCSGKTQENAMRQPADLSTSKDEHRSPFCLIDSPVRTSSHSTEGTLDKDTSGLSKENK 295

Query: 320 QLAWRQSITVEVANKDQQQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVII 379
            L  +Q      A++ + ++ S      +EV+DLL+ SP+ R     KKRR + ++P II
Sbjct: 296 VLTMKQLPATVAADRGKPKISSLDTSCEIEVIDLLSCSPDYRTNPCFKKRRATTVHPEII 355

Query: 380 DLT 382
           DLT
Sbjct: 356 DLT 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454983|ref|XP_004145233.1| PREDICTED: uncharacterized protein LOC101203492 [Cucumis sativus] gi|449471301|ref|XP_004153269.1| PREDICTED: uncharacterized protein LOC101204996 [Cucumis sativus] gi|449506301|ref|XP_004162709.1| PREDICTED: uncharacterized protein LOC101229010 [Cucumis sativus]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 181/372 (48%), Positives = 233/372 (62%), Gaps = 42/372 (11%)

Query: 41  DQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLC 100
           ++  GFF+CYLL S CPRFKGHTYIGFTVNP+RRIRQHNGEIRCGA RTK++RPWEMVLC
Sbjct: 28  NEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLC 87

Query: 101 IYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNI 160
           IYGFPTNVSALQFEWAWQHP ESLAVR AAATFKS SGVANK+KLA+TML LP W  LNI
Sbjct: 88  IYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNI 147

Query: 161 KVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERDESLLGDEDSLGDEDYNEASE 220
            VNYFSTK+ K+++ CPSLPEHMKVQV  ++ELPCY+E D+ +L +E   GD +YN   E
Sbjct: 148 TVNYFSTKFMKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENE---GDWEYNRERE 204

Query: 221 N------SGSLEETCGDVTINFSSDYSFS-------IYEAADEQCGQFKQYGNEQPRDSS 267
                   GS++E   +V      DY          +    D++        NEQ   SS
Sbjct: 205 EICGFRVYGSMKEVSNEVPQKL-MDYQTGTDGRPPHVLRGCDKELET-----NEQVPPSS 258

Query: 268 CLE--VNCQQPFGLLSSLET--TAPIISSTSAEETNELGRQRSEQFATAVNDEENQQL-- 321
           C    ++    + L +  E        +++  +     G  R+E     ++DEE  QL  
Sbjct: 259 CTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTE---IVIDDEEENQLEG 315

Query: 322 --------AWRQSITVEVANKDQQQVQSSTG-LPNV--EVVDLLTPSPNCREMSYSKKRR 370
                     R+++T  +A++  +  + + G +P V  EV+D+ TPSP+CR  S+  KRR
Sbjct: 316 SSMNLQEQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRR 375

Query: 371 VSGLYPVIIDLT 382
           V+     +IDLT
Sbjct: 376 VTSGKSEMIDLT 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537639|ref|XP_003537333.1| PREDICTED: structure-specific endonuclease subunit SLX1-like [Glycine max]

 Score =  317 bits (811), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 192/395 (48%), Positives = 236/395 (59%), Gaps = 36/395 (9%)

Query: 1   MRKRKGSKAVHDPETLISKSKTLDPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFK 60
           MRKRK +  + + E++ +         +  E ED E        GFFACYLLTSL PRFK
Sbjct: 1   MRKRKVASVIEEEESVQNHGH-----NNQNENEDCEGN------GFFACYLLTSLSPRFK 49

Query: 61  GHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP 120
           GHTYIGFTVNPRRRIRQHNGEI CGA RTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP
Sbjct: 50  GHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP 109

Query: 121 MESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLP 180
           +ESLAVR+AA  FKS SG+ANKIKLA+TML LP+W+S+NI VN+FSTKY KH + CPSLP
Sbjct: 110 VESLAVRKAAVEFKSLSGIANKIKLAYTMLTLPSWQSMNITVNFFSTKYMKHCAGCPSLP 169

Query: 181 EHMKVQVRSMDELPCYTERDESLLGDEDSLGDE---DYNEASENSGSLEETCGDVTINFS 237
            HMK +  S+DELPCY +  + L  +ED   DE   D N  S  SGS+ +   D+    S
Sbjct: 170 VHMKTKFGSLDELPCYNKGIDGLSENEDDTIDEVQFDDNNIS-TSGSVPDVSDDLVTPDS 228

Query: 238 ------SDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLSSLETTAPIIS 291
                  D     +E   E   +    GN             Q+   L SS        S
Sbjct: 229 PQNPNDGDKISEAFEWNKESEAREPPLGN---------SFASQEQSQLFSSTTPLTMKSS 279

Query: 292 STSAEETNELGRQRSEQFATAVN--DEENQQLAWRQS-ITVEVANKDQQQVQSSTGLPNV 348
           ST++ +  E+  +  + F + +N  D +  Q    QS  T  VANK++   ++       
Sbjct: 280 STTSLQRAEIIEE--DDFMSVMNKSDADLSQPEPEQSGATTLVANKNRDVGRTFVVPHET 337

Query: 349 EVVDLLTPSPNCREMSYSKKRRVSGLYPV-IIDLT 382
           E++DL TPSP+CR +   KKRRVS       IDLT
Sbjct: 338 EIIDLSTPSPSCRSVLDRKKRRVSSSVGTDFIDLT 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145473|ref|XP_002325655.1| predicted protein [Populus trichocarpa] gi|222862530|gb|EEF00037.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 143/203 (70%), Positives = 171/203 (84%), Gaps = 7/203 (3%)

Query: 24  DPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIR 83
           +P ++  EE +  +K K+   GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGE+R
Sbjct: 8   NPPQEIVEEGEAAEKGKN---GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGELR 64

Query: 84  CGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKI 143
            GA RTKKRRPWEMV+C+YGFPTNV+ALQFEWAWQHP ES+AVRQAAA FKSFSGVANKI
Sbjct: 65  SGACRTKKRRPWEMVICVYGFPTNVAALQFEWAWQHPTESVAVRQAAAAFKSFSGVANKI 124

Query: 144 KLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERDESL 203
           KLA+TMLNLP+W+SLNI VNYFST+Y  HS+ CPSLP++MKVQ+  M+ELPCY++  ++L
Sbjct: 125 KLAYTMLNLPSWQSLNITVNYFSTQYKVHSAGCPSLPKNMKVQICPMNELPCYSDFVDNL 184

Query: 204 L---GDEDSL-GDEDYNEASENS 222
                DED+  G+E+Y  AS+ S
Sbjct: 185 FEERDDEDAWDGEEEYERASDGS 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124772|ref|XP_002319418.1| predicted protein [Populus trichocarpa] gi|222857794|gb|EEE95341.1| predicted protein [Populus trichocarpa]

 Score =  300 bits (768), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 140/192 (72%), Positives = 160/192 (83%), Gaps = 4/192 (2%)

Query: 35  EEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRP 94
           E  +A+  + GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGE+R GA RTKKRRP
Sbjct: 1   ELGEAEKGKNGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGELRSGACRTKKRRP 60

Query: 95  WEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPN 154
           WEMV CIYGFPTNV+ALQFEWAWQHP ES+AVRQAAA FKSFSGVANKIKLA+TMLNLP+
Sbjct: 61  WEMVFCIYGFPTNVAALQFEWAWQHPTESVAVRQAAAAFKSFSGVANKIKLAYTMLNLPS 120

Query: 155 WESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERDESLL---GDEDSL- 210
           W+SLNI +NYFST Y  HS  CPSLP++MKVQ+  MDELPCY +  + L     +ED+  
Sbjct: 121 WQSLNITINYFSTNYKVHSVGCPSLPKNMKVQICPMDELPCYCDSGDILFEERENEDACD 180

Query: 211 GDEDYNEASENS 222
           G+E+Y  AS+ S
Sbjct: 181 GEEEYERASDGS 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569467|ref|NP_180594.2| GIY-YIG catalytic domain-containing protein [Arabidopsis thaliana] gi|51968920|dbj|BAD43152.1| hypothetical protein [Arabidopsis thaliana] gi|51968928|dbj|BAD43156.1| hypothetical protein [Arabidopsis thaliana] gi|51971411|dbj|BAD44370.1| hypothetical protein [Arabidopsis thaliana] gi|66792676|gb|AAY56440.1| At2g30350 [Arabidopsis thaliana] gi|330253280|gb|AEC08374.1| GIY-YIG catalytic domain-containing protein [Arabidopsis thaliana]

 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 188/397 (47%), Positives = 236/397 (59%), Gaps = 52/397 (13%)

Query: 1   MRKRKGSKAVHDPETLISKSKTLDPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFK 60
           MR+++G++            K LDPV +D          KD  KGFFACYLLTSL PR K
Sbjct: 1   MREKRGNR------------KALDPVGED------GVTGKDG-KGFFACYLLTSLSPRHK 41

Query: 61  GHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP 120
           G TYIGFTVNPRRRIRQHNGEI  GA RTKK+RPWEMVLCIYGFPTNVSALQFEWAWQHP
Sbjct: 42  GQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQHP 101

Query: 121 MESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLP 180
            ES+AVR+AAA FKSFSGVA+KIKL +TMLNLP W SLN+ VNYFS+KY+ H    PSLP
Sbjct: 102 RESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNYFSSKYAHHGGKSPSLP 161

Query: 181 EHMKVQVRSMDELPCYTERDESLLG-DEDS--LGDEDYNEASENSGSLEETCGDVTINFS 237
            HMKVQV +M++L  +T+ D+S    DE+S  + +ED ++  ++S +L +  G+   + S
Sbjct: 162 LHMKVQVCAMEDLQYFTKVDDSSQPEDEESPEVNEEDDDDDDDDSSNLSQP-GNSNTSSS 220

Query: 238 SDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLL---------SSLETTAP 288
            D  F   E A E    F    +E+ R ++         FGLL          S  T   
Sbjct: 221 DDRHF---EKAKEPVTVF----DEEDRLANF------SGFGLLDEEETVEDEVSHITVGS 267

Query: 289 IISSTSAEET---NELGRQRSEQFATAVNDEENQQLAWRQSITVEVANKDQQQVQSSTGL 345
           I ++    ET   + L           V DE +           +   K +  + S+T  
Sbjct: 268 IRATEKEPETVFNDRLASFTCFGLVEIVEDEVSHGTIGSTEAMEKECRKRRNHITSTTTE 327

Query: 346 PNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT 382
            +VEV+DL+TPSP+CR  S  K+RRVS      IDLT
Sbjct: 328 VDVEVIDLMTPSPSCRAGSSMKRRRVSEF----IDLT 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745781|emb|CBI15837.3| unnamed protein product [Vitis vinifera]

 Score =  297 bits (760), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 147/241 (60%), Positives = 173/241 (71%), Gaps = 15/241 (6%)

Query: 33  EDEEQKAKDQQKG--FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK 90
           E  E+    ++KG  FFACYLL SL PR KGH+YIGFTVNPRRRIRQHNGEI CGA +TK
Sbjct: 9   EISEETLNSEEKGDDFFACYLLASLSPRHKGHSYIGFTVNPRRRIRQHNGEITCGAWKTK 68

Query: 91  KRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTML 150
           ++RPWEMVLCIYGFPTNVSALQFEWAWQHP ESLAVR+AAA FKS SG+ANKIKLA+TM 
Sbjct: 69  RKRPWEMVLCIYGFPTNVSALQFEWAWQHPTESLAVRKAAAGFKSLSGIANKIKLAYTMF 128

Query: 151 NLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTERDESLLGDEDSL 210
            LP W+SLN+ VN+FSTKY+KHS+ CP LPEHM+VQV  MDELPCY+  D+S    +++ 
Sbjct: 129 TLPAWQSLNLTVNFFSTKYTKHSAGCPILPEHMRVQVSPMDELPCYSGSDQSFF--DNAR 186

Query: 211 GDEDYNEASENSGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLE 270
           GDE   E  E   S +            D   +  E A EQ G  +++G  QP DS   E
Sbjct: 187 GDEK-EELGERGSSSD----------GFDQVIAHEETALEQFGWIEEHGLRQPGDSPSPE 235

Query: 271 V 271
           V
Sbjct: 236 V 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826441|ref|XP_002881103.1| endo/excinuclease amino terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297326942|gb|EFH57362.1| endo/excinuclease amino terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  283 bits (725), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 181/406 (44%), Positives = 231/406 (56%), Gaps = 56/406 (13%)

Query: 1   MRKRKGSKAVHDPETLISKSKTLDPVKDDFEEEDEEQKAKDQQKGFFACYLLTSLCPRFK 60
           MR+++G++            K LDPV +D       +    + KGFFACYLLTSL PR K
Sbjct: 1   MREKRGNR------------KALDPVGED-------EVTGKEGKGFFACYLLTSLSPRHK 41

Query: 61  GHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSA-----LQFEW 115
           G TYIGFTVNPRRRIRQHNGEI  GA RTKK+RPWEMVLCIYGFPTNVSA     LQFEW
Sbjct: 42  GQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGFPTNVSALQKPPLQFEW 101

Query: 116 AWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSS 175
           AWQHP ES+AVR+AAA FKSFSG+A+KIKL +TMLNLP W SLN+ VNYFS+KY+ H   
Sbjct: 102 AWQHPRESVAVREAAAAFKSFSGIASKIKLVYTMLNLPAWNSLNLTVNYFSSKYAHHGGK 161

Query: 176 CPSLPEHMKVQVRSMDELPCYTE-RDESLLGDEDSLGDEDYNEASENSGSLEETCGDVTI 234
            PSLP HMKVQV ++D+L  +T+  + S   DE+S  D + NE  E   S  ++      
Sbjct: 162 SPSLPLHMKVQVCALDDLQYFTKLYNGSQPEDEESPKDNEENEEEEEEDSSNQSQPGNAD 221

Query: 235 NFSSDYSFSIYEAADEQCGQFKQYG-------NEQPRDSSCLEVNCQQPFGLL--SSLET 285
             S+D    +Y    E  G+  +         +E+ R ++         FGLL   + E 
Sbjct: 222 TCSTD---DLYPGEKELHGRHFENAKVPVTVFDEEDRLANF------TGFGLLEEETFED 272

Query: 286 TAPIISSTSAEET---------NELGRQRSEQFATAVNDEENQQLAWRQSITVEVANKDQ 336
               I+  S E T         + L           V DE +           +   + +
Sbjct: 273 EVSHITVGSIEATEKEPETVFNDRLASFTGFGLVEIVEDEVSNGTVGSTEAMEKDCRRRR 332

Query: 337 QQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT 382
             + S+T   +VEV+DL+TPSP+CR+ S  K+RRVS      IDLT
Sbjct: 333 NLITSTTTEVDVEVIDLMTPSPSCRDGSSMKRRRVSEF----IDLT 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326492143|dbj|BAJ98296.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  270 bits (691), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 138/168 (82%)

Query: 31  EEEDEEQKAKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK 90
           E +D  +KA     GFF CYLL SLCPR K  TYIGFTVNPRRRIRQHNGE+RCGA RTK
Sbjct: 32  ETKDGPEKAAAGGGGFFCCYLLRSLCPRSKSRTYIGFTVNPRRRIRQHNGELRCGAWRTK 91

Query: 91  KRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTML 150
           + RPWEM+LCIYGFPTNV+ALQFEWAWQHP ESLAVR+AAA FKS  G+ NK+KLA+TML
Sbjct: 92  RGRPWEMMLCIYGFPTNVAALQFEWAWQHPTESLAVRKAAAEFKSLGGIGNKVKLAYTML 151

Query: 151 NLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYTE 198
           NLP+WE+LN+ VN+FSTK +K ++ CP+LP HMK  V  M++LPCY E
Sbjct: 152 NLPSWENLNLTVNFFSTKNTKFTAGCPALPCHMKTVVSPMEDLPCYVE 199

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2065775	368	AT2G30350 [Arabidopsis thalian	0.837	0.869	0.478	4.3e-70
MGI|MGI:1915220	270	Slx1b "SLX1 structure-specific	0.361	0.511	0.432	1e-27
RGD|1311568	271	Slx1b "SLX1 structure-specific	0.361	0.509	0.425	2.2e-27
UNIPROTKB|Q32PI0	267	SLX1A "Structure-specific endo	0.356	0.509	0.424	1.2e-26
UNIPROTKB|Q9BQ83	275	SLX1A "Structure-specific endo	0.356	0.494	0.402	9.7e-25
FB|FBgn0037263	297	slx1 "nuclease slx1" [Drosophi	0.356	0.457	0.391	1.8e-23
SGD|S000000432	304	SLX1 "Endonuclease involved in	0.316	0.398	0.387	8e-19
POMBASE|SPAP27G11.15	271	slx1 "structure-specific endon	0.329	0.464	0.377	1.8e-18
CGD|CAL0003774	286	orf19.972 [Candida albicans (t	0.345	0.461	0.375	2.4e-18
WB|WBGene00018909	443	slx-1 [Caenorhabditis elegans	0.363	0.313	0.360	6e-17

TAIR|locus:2065775 AT2G30350 [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 169/353 (47%), Positives = 208/353 (58%)

Query:    45 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGF 104
             GFFACYLLTSL PR KG TYIGFTVNPRRRIRQHNGEI  GA RTKK+RPWEMVLCIYGF
Sbjct:    26 GFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYGF 85

Query:   105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
             PTNVSALQFEWAWQHP ES+AVR+AAA FKSFSGVA+KIKL +TMLNLP W SLN+ VNY
Sbjct:    86 PTNVSALQFEWAWQHPRESVAVREAAAAFKSFSGVASKIKLVYTMLNLPAWNSLNLTVNY 145

Query:   165 FSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYT---ERXXXXXXXXXXXXXXXYNEASEN 221
             FS+KY+ H    PSLP HMKVQV +M++L  +T   +                 ++  ++
Sbjct:   146 FSSKYAHHGGKSPSLPLHMKVQVCAMEDLQYFTKVDDSSQPEDEESPEVNEEDDDDDDDD 205

Query:   222 SGSLEETCGDVTINFSSDYSFSIYEAADEQCGQFKQYGNEQPRDSSCLEVNCQQPFGLLS 281
             S +L +  G+   + S D  F   E A E    F    +E+ R ++         FGLL 
Sbjct:   206 SSNLSQP-GNSNTSSSDDRHF---EKAKEPVTVF----DEEDRLANF------SGFGLLD 251

Query:   282 SLETTAPIISSTSA-------EETNELGRQRSEQFAT-----AVNDEENQQLAWRQSITV 329
               ET    +S  +        +E   +   R   F        V DE +           
Sbjct:   252 EEETVEDEVSHITVGSIRATEKEPETVFNDRLASFTCFGLVEIVEDEVSHGTIGSTEAME 311

Query:   330 EVANKDQQQVQSSTGLPNVEVVDLLTPSPNCREMSYSKKRRVSGLYPVIIDLT 382
             +   K +  + S+T   +VEV+DL+TPSP+CR  S  K+RRVS      IDLT
Sbjct:   312 KECRKRRNHITSTTTEVDVEVIDLMTPSPSCRAGSSMKRRRVSEF----IDLT 360

GO:0004518 "nuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

MGI|MGI:1915220 Slx1b "SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 61/141 (43%), Positives = 84/141 (59%)

Query:    46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGF 104
             FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL I+GF
Sbjct:    10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGF 69

Query:   105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
             P+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W  L + + +
Sbjct:    70 PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRW 129

Query:   165 FSTKYSKHSSSCPSLPEHMKV 185
                 + +H   CP+ P HM +
Sbjct:   130 LRPDF-RHEL-CPAPPAHMPI 148

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=ISO

GO:0006310 "DNA recombination" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=ISO

GO:0010792 "DNA double-strand break processing involved in repair via single-strand annealing" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017108 "5'-flap endonuclease activity" evidence=ISO

GO:0033557 "Slx1-Slx4 complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1311568 Slx1b "SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 60/141 (42%), Positives = 83/141 (58%)

Query:    46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGF 104
             FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL ++GF
Sbjct:    10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGF 69

Query:   105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
             P+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W  L + V +
Sbjct:    70 PSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRW 129

Query:   165 FSTKYSKHSSSCPSLPEHMKV 185
                 + +H   CP+ P HM +
Sbjct:   130 LRPDF-RHEL-CPAPPPHMPI 148

GO:0000724 "double-strand break repair via homologous recombination" evidence=ISO

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA;ISO

GO:0006310 "DNA recombination" evidence=IEA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=ISO

GO:0010792 "DNA double-strand break processing involved in repair via single-strand annealing" evidence=ISO

GO:0017108 "5'-flap endonuclease activity" evidence=ISO

GO:0033557 "Slx1-Slx4 complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q32PI0 SLX1A "Structure-specific endonuclease subunit SLX1" [Bos taurus (taxid:9913)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 59/139 (42%), Positives = 80/139 (57%)

Query:    46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGF 104
             FF  YLL  L PR +G  Y+GFTVNP RR++QHNG   + GA RT  R PWEMVL ++GF
Sbjct:     6 FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGF 65

Query:   105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
             P+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L + + +
Sbjct:    66 PSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRW 125

Query:   165 FSTKYSKHSSSCPSLPEHM 183
                 + +    CP  P HM
Sbjct:   126 LRADFRQ--DLCPPPPPHM 142

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

UNIPROTKB|Q9BQ83 SLX1A "Structure-specific endonuclease subunit SLX1" [Homo sapiens (taxid:9606)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 56/139 (40%), Positives = 79/139 (56%)

Query:    46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGF 104
             FF  YLL  L PR++G  Y+GFTVN  RR++QHNG   + GA RT  R PWEMVL ++GF
Sbjct:    13 FFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGF 72

Query:   105 PTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNY 164
             P++V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L + + +
Sbjct:    73 PSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRW 132

Query:   165 FSTKYSKHSSSCPSLPEHM 183
                +       C   P H+
Sbjct:   133 --VRPDLRQDLCLPPPPHV 149

GO:0046872 "metal ion binding" evidence=IEA

GO:0017108 "5'-flap endonuclease activity" evidence=IDA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=IDA

GO:0010792 "DNA double-strand break processing involved in repair via single-strand annealing" evidence=IMP

GO:0006281 "DNA repair" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0033557 "Slx1-Slx4 complex" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IMP

FB|FBgn0037263 slx1 "nuclease slx1" [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 58/148 (39%), Positives = 83/148 (56%)

Query:    46 FFACYLLTS--LCPRFKGHTYIGFTVNPRRRIRQHNGEIRC---GAVRTKKRRPWEMVLC 100
             F+  YLL S  L PR++G  Y+GFTVNP+RRIRQHN  + C   GA +T ++ PW MV+ 
Sbjct:    23 FYGVYLLCSQSLDPRYRGKCYVGFTVNPKRRIRQHN--LGCDFGGARKTSRKGPWLMVMI 80

Query:   101 IYGFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVA---NKIKLAFTMLNLPNWES 157
             ++GFP N  ALQFEWAWQ P  S  ++      +            ++   ML +  W  
Sbjct:    81 VHGFPNNTVALQFEWAWQQPSLSTRLKMYPELKRKLPRETFFDYNFRILSNMLGVGPWNR 140

Query:   158 LNIKVNYFSTKYSKHSSSCPSLPEHMKV 185
             L + V +  T Y +  S   +LP+HM++
Sbjct:   141 LPLTVRWLETDYERPFSK--ALPKHMEI 166

GO:0033557 "Slx1-Slx4 complex" evidence=ISS

GO:0004520 "endodeoxyribonuclease activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IMP

SGD|S000000432 SLX1 "Endonuclease involved in DNA recombination and repair" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 227 (85.0 bits), Expect = 8.0e-19, P = 8.0e-19
 Identities = 50/129 (38%), Positives = 77/129 (59%)

Query:    46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIY 102
             F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + 
Sbjct:    13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVR 70

Query:   103 GFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSG---VANKIKLAFTMLNLPNWESLN 159
             GFP+ ++ALQFE AWQH  ++  + +     K  +G   + +K+ L   +L    ++ +N
Sbjct:    71 GFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMN 130

Query:   160 IKVNYFSTK 168
             + V  F+ K
Sbjct:   131 LIVEVFNIK 139

GO:0005634 "nucleus" evidence=IEA;IC

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

GO:0017108 "5'-flap endonuclease activity" evidence=IDA

GO:0006261 "DNA-dependent DNA replication" evidence=IGI

GO:0033557 "Slx1-Slx4 complex" evidence=IPI

POMBASE|SPAP27G11.15 slx1 "structure-specific endonuclease catalytic subunit" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 224 (83.9 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 48/127 (37%), Positives = 68/127 (53%)

Query:    46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFP 105
             F+ CYLL S   +  G  YIG T +P RR+RQHNGEI  GA +TK  RPW +   +YGFP
Sbjct:     6 FYCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFP 65

Query:   106 TNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKVNYF 165
               VSAL+FEW WQ+   S   +      K    +   +K    +++   W    + + + 
Sbjct:    66 NKVSALKFEWNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKHLVDSDTWRRWPLNITFL 125

Query:   166 S-TKYSK 171
             + T +SK
Sbjct:   126 NKTAFSK 132

GO:0000724 "double-strand break repair via homologous recombination" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0016894 "endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters" evidence=IDA

GO:0030874 "nucleolar chromatin" evidence=IDA

GO:0030875 "rDNA protrusion" evidence=NAS

GO:0033557 "Slx1-Slx4 complex" evidence=IDA

GO:0034065 "replication fork processing at rDNA locus" evidence=TAS

GO:0043007 "maintenance of rDNA" evidence=IMP

GO:0045458 "recombination within rDNA repeats" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0003774 orf19.972 [Candida albicans (taxid:5476)]

 Score = 223 (83.6 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 54/144 (37%), Positives = 85/144 (59%)

Query:    46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIY 102
             F+  Y+L S+ P+ +  TYIG T +P+RR+RQHNG+++ G A RTKK   RPW MV+ +Y
Sbjct:    16 FYGVYILKSI-PKPRS-TYIGSTPDPKRRLRQHNGDLKVGGAYRTKKDGSRPWNMVVLVY 73

Query:   103 GFPTNVSALQFEWAWQHPMESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNIKV 162
             GFP+ ++ALQFE + QH  ++  +   A    S    +   KLA   L   +++ +++K+
Sbjct:    74 GFPSRIAALQFEHSLQHAYQTRHIDNDARITSSSRQSSIHSKLANIRLLTTSFDKMSLKI 133

Query:   163 NYFSTK-Y-----SKHSSSCPSLP 180
               F  + Y     +KH   C S+P
Sbjct:   134 AIFDEEVYRMWIENKHKIEC-SVP 156

GO:0033557 "Slx1-Slx4 complex" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=IEA

GO:0017108 "5'-flap endonuclease activity" evidence=IEA

WB|WBGene00018909 slx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 229 (85.7 bits), Expect = 6.0e-17, P = 6.0e-17
 Identities = 53/147 (36%), Positives = 84/147 (57%)

Query:    46 FFACYLLTSLCPR--FKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIY 102
             F+  Y L S   R  +K   YIG+TV+P RRI QHNG   + GA +T  R PW+MV  ++
Sbjct:   172 FYGVYCLISRSDRPCYKNRCYIGYTVDPNRRIMQHNGGRDKGGAKKTDSRGPWDMVCVVH 231

Query:   103 GFPTNVSALQFEWAWQHPM--ESLAVRQAAATFKSFSGVANKIKLAFTMLNLPNWESLNI 160
             GFP +V+AL FEWAWQ+P+  +SL  +Q     K  +  A ++++A  ++N   +    +
Sbjct:   232 GFPNHVAALHFEWAWQNPLVSKSLKEKQLRKERKE-TPFAFQLRIACELMNSSAFCRFAL 290

Query:   161 KVNYF-STKYSKHSSSCPSLPEHMKVQ 186
                +  +T+     +SC   P+H K++
Sbjct:   291 TFRWLITTEELPFPTSCVP-PDHTKLR 316

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023960001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (364 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
cd10455	76	cd10455, GIY-YIG_SLX1, Catalytic GIY-YIG domain of	2e-52
cd10449	67	cd10449, GIY-YIG_SLX1_like, Catalytic GIY-YIG doma	7e-13
smart00465	84	smart00465, GIYc, GIY-YIG type nucleases (URI doma	2e-07
cd10456	68	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of un	1e-06
pfam01541	76	pfam01541, GIY-YIG, GIY-YIG catalytic domain	3e-06
COG2827	95	COG2827, COG2827, Predicted endonuclease containin	2e-04
cd00719	69	cd00719, GIY-YIG_SF, GIY-YIG nuclease domain super	8e-04

>gnl|CDD|198402 cd10455, GIY-YIG_SLX1, Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its eukaryotic homologs

 Score =  168 bits (428), Expect = 2e-52
 Identities = 51/75 (68%), Positives = 64/75 (85%)

Query: 46  FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFP 105
           F+  YLL SL P++KG TYIGFTVNP RR+RQHNGE++ GA +T ++RPWEMVL ++GFP
Sbjct: 1   FYGVYLLRSLNPKYKGRTYIGFTVNPPRRLRQHNGELKGGAKKTSRKRPWEMVLIVHGFP 60

Query: 106 TNVSALQFEWAWQHP 120
           + V+ALQFEWAWQHP
Sbjct: 61  SKVAALQFEWAWQHP 75

Structure-specific endonuclease subunit SLX1 is a highly conserved protein from yeast to human, with an N-terminal GIY-YIG endonuclease domain and a C-terminal PHD-type zinc finger postulated to mediate protein-protein or protein-DNA interaction. SLX1 forms active heterodimeric complexes with its SLX4 partner, which has additional roles in the DNA damage response that are distinct from the function of the heterodimeric SLX1-SLX4 nuclease. In yeast, the SLX1-SLX4 complex functions as a 5' flap endonuclease that maintains ribosomal DNA copy number, where SLX1 and SLX4 are shown to be catalytic and regulatory subunits, respectively. This endonuclease introduces single-strand cuts in duplex DNA on the 3' side of junctions with single-strand DNA. In addition to 5' flap endonuclease activity, human SLX1-SLX4 complex has been identified as a Holliday junction resolvase that promotes symmetrical cleavage of static and migrating Holliday junctions. SLX1 also associates with MUS81, EME1, C20orf94, PLK1, and ERCC1. Some eukaryotic SLX1 homologs lack the zinc finger domain, but possess intrinsically unstructured extensions of unknown function. These unstructured segments might be involved in interactions with other proteins. Length = 76

>gnl|CDD|198396 cd10449, GIY-YIG_SLX1_like, Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its homologs

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)

Query: 49  CYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAV-RTKKRRPWEMVLCIYGFPTN 107
            Y+L S         YIG+T +  RR+ QHN     G    T K RPWE+V     F + 
Sbjct: 2   VYILYSE---KLDRYYIGYTSDLERRLEQHN----SGKSKFTSKYRPWELVYSEA-FESK 53

Query: 108 VSALQFEWAWQH 119
             AL+ E   + 
Sbjct: 54  SEALKREKYLKS 65

Structure-specific endonuclease subunit SLX1 is a highly conserved protein from yeast to human, with an N-terminal GIY-YIG endonuclease domain and a C-terminal PHD-type zinc finger postulated to mediate protein-protein or protein-DNA interaction. SLX1 forms active heterodimeric complexes with its SLX4 partner, which has additional roles in the DNA damage response that are distinct from the function of the heterodimeric SLX1-SLX4 nuclease. In yeast, the SLX1-SLX4 complex functions as a 5' flap endonuclease that maintains ribosomal DNA copy number, where SLX1 and SLX4 are shown to be catalytic and regulatory subunits, respectively. This endonuclease introduces single-strand cuts in duplex DNA on the 3' side of junctions with single-strand DNA. In addition to 5' flap endonuclease activity, human SLX1-SLX4 complex has been identified as a Holliday junction resolvase that promotes symmetrical cleavage of static and migrating Holliday junctions. SLX1 also associates with MUS81, EME1, C20orf94, PLK1, and ERCC1. Some eukaryotic SLX1 homologs lack the zinc finger domain, but possess intrinsically unstructured extensions of unknown function. These unstructured segments might be involved in interactions with other proteins. Length = 67

>gnl|CDD|214677 smart00465, GIYc, GIY-YIG type nucleases (URI domain)

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 47  FACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPT 106
              Y +T+   +  G  Y+G   N R R+++H           K R   + +L   G   
Sbjct: 2   PGVYYITN---KKNGKLYVGKAKNLRNRLKRHFSG------SRKGRLLIDALLKYGGNFE 52

Query: 107 NVSALQFEWAWQHPMESLAVRQAAATFK 134
            +    F+      +E   +++    + 
Sbjct: 53  FIILESFDE-SALELEKYLIKEYKPKYN 79

Length = 84

>gnl|CDD|198403 cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 61  GHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWA 116
           G  Y G T +  RR+ +HN     GA  T+ RRP ++V     F     AL+ E+ 
Sbjct: 11  GSLYTGITTDLERRLAEHNSGK--GAKYTRGRRPVKLVYS-EEFDDRSEALKREYR 63

This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human. Length = 68

>gnl|CDD|216559 pfam01541, GIY-YIG, GIY-YIG catalytic domain

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 49  CYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNV 108
            Y++T+   +     Y+G T N +RR++QH          T+ ++P+E+++    FPT  
Sbjct: 4   VYIITN---KDNKVLYVGSTKNLKRRLKQHFSGKGAKK--TRNKKPFELIILEE-FPTKE 57

Query: 109 SALQFEWAW 117
            AL+ E   
Sbjct: 58  EALELEKYL 66

This domain called GIY-YIG is found in the amino terminal region of excinuclease abc subunit c (uvrC), bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage. The structure of I-TevI a GIY-YIG endonuclease, reveals a novel alpha/beta-fold with a central three-stranded antiparallel beta-sheet flanked by three helices. The most conserved and putative catalytic residues are located on a shallow, concave surface and include a metal coordination site. Length = 76

>gnl|CDD|225383 COG2827, COG2827, Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair]

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 64  YIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIY-GFPTNVSALQFEWA 116
           Y G T +  RR+ +HN         T++  P  +V   Y  F     AL+ E  
Sbjct: 18  YTGVTTDLERRLAEHNSGKGAKY--TRRYGPVRLV--WYEEFDDKSEALRREKR 67

Length = 95

>gnl|CDD|198380 cd00719, GIY-YIG_SF, GIY-YIG nuclease domain superfamily

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 64  YIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAW 117
           Y+G T N R RI++H  + R  +  TK  +P+E +L +   P   S L    A 
Sbjct: 14  YVGQTKNLRNRIKEHLRKQR--SDWTKGLKPFE-ILYLEVAPEAESELLDLEAA 64

The GIY-YIG nuclease domain superfamily includes a large and diverse group of proteins involved in many cellular processes, such as class I homing GIY-YIG family endonucleases, prokaryotic nucleotide excision repair proteins UvrC and Cho, type II restriction enzymes, the endonuclease/reverse transcriptase of eukaryotic retrotransposable elements, and a family of eukaryotic enzymes that repair stalled replication forks. All of these members contain a conserved GIY-YIG nuclease domain that may serve as a scaffold for the coordination of a divalent metal ion required for catalysis of the phosphodiester bond cleavage. By combining with different specificity, targeting, or other domains, the GIY-YIG nucleases may perform different functions. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
KOG3005	276	consensus GIY-YIG type nuclease [General function	100.0
PRK00329	86	GIY-YIG nuclease superfamily protein; Validated	99.89
COG2827	95	Predicted endonuclease containing a URI domain [DN	99.85
PF01541	80	GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR00	98.94
smart00465	84	GIYc GIY-YIG type nucleases (URI domain).	98.14
PF10544	100	T5orf172: T5orf172 domain; InterPro: IPR018306 Thi	96.9
TIGR01453	214	grpIintron_endo group I intron endonuclease. This	96.69

>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]

Probab=100.00  E-value=1.5e-41  Score=324.18  Aligned_cols=233  Identities=34%  Similarity=0.598  Sum_probs=181.3

Q ss_pred             ccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCC
Q 016815           41 DQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP  120 (382)
Q Consensus        41 ~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p  120 (382)
                      +....||+||||.|.+|+++|++|||+|+||.||||||||.++|||++|++++||+||++|+|||++.+|||||||||||
T Consensus         3 ~~~~~Fy~cYlL~s~sp~~r~~~yigst~nP~rRlRqhNg~~~gga~kt~~~~PWeMv~iV~GFPn~vsALqFEwAWQ~p   82 (276)
T KOG3005|consen    3 KDGKGFYCCYLLTSLSPRYKGRTYIGSTVNPSRRLRQHNGEIKGGAWKTKKRRPWEMVMIVHGFPNKVSALQFEWAWQHP   82 (276)
T ss_pred             cccCceEEEEEEeecCcCcCCceEEeeeCCCchhHHhhCCcccCcccccCCCCCceEEEEeccCCccchhcchhhhccCc
Confidence            34578999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             CchhHHHHhhhhhc---ccccccchHHHHHHhcCCCCCCCCCceEEEecchhhhcccCCCCCCCcceEeeecCCCCcccc
Q 016815          121 MESLAVRQAAATFK---SFSGVANKIKLAFTMLNLPNWESLNIKVNYFSTKYSKHSSSCPSLPEHMKVQVRSMDELPCYT  197 (382)
Q Consensus       121 ~~sr~lr~~~~~~K---~~sg~~~klrll~~ML~~~pw~RlpLtV~~Fs~e~~~~~~~c~~lP~Hm~v~~g~~~~Lp~~~  197 (382)
                      ..|+++++....+|   ...-|.++|+++.+|+++++|.|+||+++|+..++..-+. |.++|.||.+.+|.+.--....
T Consensus        83 ~~S~~~k~~~~~~k~~~~et~F~~~Lr~l~~~~~~~aw~R~pl~~~wl~~~~~~~f~-~l~~p~h~~~~~~~~~~~~~~~  161 (276)
T KOG3005|consen   83 LISRYLKEKDTRLKSKSIETDFMYRLRILNHVLRSGAWARSPLTIRWLETDLETPFT-CLSQPGHSELKFGKVTRKAPAV  161 (276)
T ss_pred             chhhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCchhcCCccchhcchhhcCCcc-ccCCCCcccccccccccccccc
Confidence            99999999987777   5667899999999999999999999999999999887666 8899999999998875333222


Q ss_pred             ccccCccCCCCCCCCccccccccCCCCccccccccccC--------CCCCCcchhhhhhhhhhhccc----ccCCCCCCC
Q 016815          198 ERDESLLGDEDSLGDEDYNEASENSGSLEETCGDVTIN--------FSSDYSFSIYEAADEQCGQFK----QYGNEQPRD  265 (382)
Q Consensus       198 ~~~~~~~~~~~~~~d~~~~e~s~~S~S~~qv~~D~~~~--------~ss~~~~ti~~~~~~~~~~~~----~~~~rqp~~  265 (382)
                      +....-     +-.|+..+--..--+....+|++-...        ..+++.-    .+|-+|++-.    +.|.=-|..
T Consensus       162 ~~~~~~-----~~eDal~~~~~~~~~~~celc~~ei~e~~~~~a~c~~~~c~~----~~h~~CLa~~~~~~e~g~~~p~e  232 (276)
T KOG3005|consen  162 KRRRDM-----SFEDALPQPRTGALNVECELCEKEILETDWSRATCPNPDCDS----LNHLTCLAEELLEVEPGQLIPLE  232 (276)
T ss_pred             cccccC-----chhhcccCccccccchhhHHHHHHhccccceeccCCCCCCCc----hhhhhhhhHHHhccCCCceeccC
Confidence            222111     112222222222222344455544421        1222222    3677786552    666677888


Q ss_pred             CCCccccccCCCCCcccc
Q 016815          266 SSCLEVNCQQPFGLLSSL  283 (382)
Q Consensus       266 ~~~p~~~c~qPfg~~s~~  283 (382)
                      --||.|+...=|+-+-.+
T Consensus       233 g~cp~C~~~~~w~~lv~~  250 (276)
T KOG3005|consen  233 GMCPKCEKFLSWTTLVDL  250 (276)
T ss_pred             CCCCchhceeeHHHHHHH
Confidence            999999998777766443

>PRK00329 GIY-YIG nuclease superfamily protein; Validated

Probab=99.89  E-value=5.5e-23  Score=167.67  Aligned_cols=78  Identities=27%  Similarity=0.368  Sum_probs=70.6

Q ss_pred             CCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCCCch
Q 016815           44 KGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMES  123 (382)
Q Consensus        44 ~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p~~s  123 (382)
                      +.+||||||+|.+    |++|||+|+||.+||+|||.|  +||++|++++||.||+ ++.|+++++|+++|++||+..+.
T Consensus         4 ~~~~~vYil~~~~----~~~Y~G~T~dl~~Rl~qH~~g--~ga~~tr~~~p~~Lv~-~e~~~~~~~A~~~E~~lK~~~r~   76 (86)
T PRK00329          4 MKPWFLYLLRCAD----GSLYTGITTDVERRFAQHQSG--KGAKYTRGRPPLTLVF-VEPVGDRSEALRAEYRFKQLTKK   76 (86)
T ss_pred             CCceEEEEEEcCC----CCEEEEEcCCHHHHHHHHHcC--CCCCCccCCCceEEEE-EEECCCHHHHHHHHHHHhcCCHH
Confidence            5679999999987    899999999999999999986  6899999999999997 79999999999999999997766


Q ss_pred             hHHHH
Q 016815          124 LAVRQ  128 (382)
Q Consensus       124 r~lr~  128 (382)
                      .+++-
T Consensus        77 ~K~~l   81 (86)
T PRK00329         77 QKERL   81 (86)
T ss_pred             HHHHH
Confidence            65543

>COG2827 Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair]

Probab=99.85  E-value=2e-21  Score=162.22  Aligned_cols=79  Identities=25%  Similarity=0.316  Sum_probs=72.5

Q ss_pred             CceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCCCchh
Q 016815           45 GFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESL  124 (382)
Q Consensus        45 ~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p~~sr  124 (382)
                      ..||||||+|.|    |++|||+|+|+.||+.|||.|  .||+||++++|..||+ ++.|+++++||++|+++|+..+..
T Consensus         3 ~~~~vYil~c~d----gtlY~GvT~D~~rR~~~H~~G--kgakyT~~~~~~~Lv~-~e~~~~~~~A~~~E~~iK~~~R~~   75 (95)
T COG2827           3 NNWYVYILRCAD----GTLYTGVTTDLERRLAEHNSG--KGAKYTRRYGPVRLVW-YEEFDDKSEALRREKRIKKLTRKQ   75 (95)
T ss_pred             cceEEEEEEeCC----CCEEEEecCCHHHHHHHHhcc--cccchhccCCceEEEE-EeecCCHHHHHHHHHHHHHHhHHH
Confidence            468999999998    999999999999999999997  6999999999999998 899999999999999999988777


Q ss_pred             HHHHhh
Q 016815          125 AVRQAA  130 (382)
Q Consensus       125 ~lr~~~  130 (382)
                      +++-+.
T Consensus        76 K~~LIe   81 (95)
T COG2827          76 KERLIE   81 (95)
T ss_pred             HHHHHh
Confidence            766554

>PF01541 GIY-YIG: GIY-YIG catalytic domain; InterPro: IPR000305 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=98.94  E-value=2.7e-09  Score=81.36  Aligned_cols=68  Identities=24%  Similarity=0.332  Sum_probs=54.9

Q ss_pred             ceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccc----cCCCeeEEEEEeccCCHHHHHHHHHHhcC
Q 016815           46 FFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK----KRRPWEMVLCIYGFPTNVSALQFEWAWQH  119 (382)
Q Consensus        46 fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr----~~rPWemV~ivegF~sKseALqfEwawK~  119 (382)
                      .++||+|.|.+   .+.+|||.|.|+.+|+.+|+.+.  ++..+.    ....|+++ +++.+.+..+|+.+|..|..
T Consensus         1 k~gIY~i~~~~---~~~~YIG~t~nl~~R~~~H~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~i~   72 (80)
T PF01541_consen    1 KYGIYIIYNKD---NKKIYIGSTKNLKKRLNEHFSGN--KSKKKKQKKYGWDNFEFI-IIEEFNTKSEALKLEQYLIK   72 (80)
T ss_dssp             -EEEEEEEETT---TEEEEEEEESSHHHHHHHHHHHC--THCSHCHHHHHSSCEEEE-EEEEESSHHHHHHHHHHHHH
T ss_pred             CcEEEEEEECC---CCEEEEEEECCHHHHHHHHhcCC--CCCcchhhhcccccEEEE-eeEEeCCHHHHHHHHHHHHH
Confidence            36899999987   25689999999999999998753  223333    26899998 58999999999999999865

The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. It is found in the amino terminal region of excinuclease abc subunit c (uvrC), Bacteriophage T4 endonucleases segA, segB, segC, segD and segE; it is also found in putative endonucleases encoded by group I introns of fungi and phage.; GO: 0004518 nuclease activity, 0006281 DNA repair, 0005622 intracellular; PDB: 1YWL_A 1YD6_D 1YD5_A 1YD1_A 1YCZ_A 1YD0_A 1YD3_A 1YD4_A 1YD2_A 1LN0_A ....

>smart00465 GIYc GIY-YIG type nucleases (URI domain)

Probab=98.14  E-value=8.9e-06  Score=61.99  Aligned_cols=68  Identities=22%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             EEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccc--cCCCeeEEEEEeccCCHHHHHHHHHHhcC
Q 016815           48 ACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK--KRRPWEMVLCIYGFPTNVSALQFEWAWQH  119 (382)
Q Consensus        48 ~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr--~~rPWemV~ivegF~sKseALqfEwawK~  119 (382)
                      +||++.+..   .+.+|||.|.|+.+|+.+|..+..++.....  ...+|.+.+.+-.+.... |+.+|..|.+
T Consensus         3 gvY~i~~~~---~~~~YVG~t~nl~~R~~~h~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~E~~~i~   72 (84)
T smart00465        3 GVYYITNKK---NGKLYVGKAKNLRNRLKRHFSGSRKGRLLIDALLKYGGNFEFIILESFDES-ALELEKYLIK   72 (84)
T ss_pred             EEEEEEECC---CCEEEEEEccCHHHHHHHHHhCCCCChHHHHHHHHhcCCeEEEEeecChHh-HHHHHHHHHH
Confidence            689998854   3899999999999999999975332222222  123433333233333333 8888888765

>PF10544 T5orf172: T5orf172 domain; InterPro: IPR018306 This entry represents a DNA-binding domain found in bacteriophage T5, ORF172 []

Probab=96.90  E-value=0.0028  Score=50.46  Aligned_cols=63  Identities=29%  Similarity=0.346  Sum_probs=44.8

Q ss_pred             EEEEeeeCCCCCCCc--EEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcC
Q 016815           48 ACYLLTSLCPRFKGH--TYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQH  119 (382)
Q Consensus        48 ~VYLL~S~d~r~~gs--~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~  119 (382)
                      |+|++.+..  ..+.  +=||+|.||.+|++|++..      .+....+|++++. ..+.....|-+.|..+++
T Consensus         2 yiYi~~~~~--~~~~~~~KIG~T~~~~~Rl~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~E~~ih~   66 (100)
T PF10544_consen    2 YIYILTSPS--NPGYNIYKIGYTTNPERRLRELNRN------STGSPFDFEVIYE-FESVPVPDARKVERLIHR   66 (100)
T ss_pred             EEEEEEecC--CCCceeEEEeeECCHHHHHHHhhcc------ccCCCCceeEEEE-EEEEecCCHHHHHHHHHH
Confidence            689997754  2355  7899999999999999942      1345678888763 344445567777887765

The domain is related to the Bro-N and KilA-N domains that are widespread in large-DNA viruses infecting bacteria and eukaryotes [].

>TIGR01453 grpIintron_endo group I intron endonuclease

Probab=96.69  E-value=0.0041  Score=58.23  Aligned_cols=68  Identities=18%  Similarity=0.312  Sum_probs=45.7

Q ss_pred             EEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcc-ccc----cCC--CeeEEEEEeccCCHHHHHHHHHHhcC
Q 016815           48 ACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAV-RTK----KRR--PWEMVLCIYGFPTNVSALQFEWAWQH  119 (382)
Q Consensus        48 ~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk-~Tr----~~r--PWemV~ivegF~sKseALqfEwawK~  119 (382)
                      +||++++..   .|.+|||.|.|+.+|+.+|......|.. ...    .++  -+.+.. .+.+-+..+.+.+|..|-.
T Consensus         3 GIY~i~n~~---ngk~YIGss~nl~~R~~~h~~~~~~~~~~~l~~ai~kyG~~nF~~~i-le~~~~~~~l~~lE~~~I~   77 (214)
T TIGR01453         3 GIYKITNNI---NGKIYVGSSVNLEKRLKEHLKLLKKGNRIKLQKALNKYGWSNFSFEI-LEYYCNKDDLIERETYYIK   77 (214)
T ss_pred             EEEEEEECC---CCcEEEEeccCHHHHHHHHHHHHhcCChHHHHHHHHHhChHheEEEE-EEEeCCHHHHHHHHHHHHH
Confidence            699999964   3899999999999999999864333433 221    222  344443 3333466677789988764

This model represents one subfamily of endonucleases containing the endo/excinuclease amino terminal domain, Pfam:PF01541 at its amino end. A distinct subfamily includes excinuclease abc subunit c (uvrC). Members of pfam01541 are often termed GIY-YIG endonucleases after conserved motifs near the amino end. This subfamily in this model is found in open reading frames of group I introns in both phage and mitochondria. The closely related endonucleases of phage T4: segA, segB, segC, segD and segE, score below the trusted cutoff for the family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	382
1ywl_A	96	Hypothetical UPF0213 protein EF2693; alpha and bet	4e-09
1zg2_A	107	Hypothetical UPF0213 protein BH0048; BHR2, structu	3e-08

>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis} Length = 96

 Score = 52.2 bits (126), Expect = 4e-09
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 61  GHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQH 119
           G  Y G+T  P RR+ +HN        R  KRRP  M+     F T   A + E A++ 
Sbjct: 17  GSFYGGYTTEPERRLTEHNSGTGAKYTRLAKRRPVIMIHT-EKFETRSEATKAEAAFKK 74

>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans} Length = 107

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 61  GHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWA 116
           G  Y G+T +  RRI++H      GA  T+ R P+ +V   + FP+   A+++E+ 
Sbjct: 18  GSWYTGYTTDVDRRIKKHASGK--GAKYTRGRGPFRLVAT-WAFPSKEEAMRWEYE 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
1ywl_A	96	Hypothetical UPF0213 protein EF2693; alpha and bet	99.92
1zg2_A	107	Hypothetical UPF0213 protein BH0048; BHR2, structu	99.91
1mk0_A	97	Intron-associated endonuclease 1; alpha/beta fold,	96.24
1yd6_A	99	UVRC; DNA binding protein; 2.00A {Bacillus caldote	95.43
1yd0_A	96	Uvrabc system protein C; DNA binding protein; 1.50	94.89

>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis}

Probab=99.92  E-value=1.7e-25  Score=185.03  Aligned_cols=81  Identities=31%  Similarity=0.385  Sum_probs=73.1

Q ss_pred             CCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccc--cCCCeeEEEEEeccCCHHHHHHHHHHhcCC
Q 016815           43 QKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTK--KRRPWEMVLCIYGFPTNVSALQFEWAWQHP  120 (382)
Q Consensus        43 ~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr--~~rPWemV~ivegF~sKseALqfEwawK~p  120 (382)
                      ...+||||||+|.+    |++|||+|+||.|||+|||+|  +||+||+  +++||+||+ +++|+++++||+|||+||++
T Consensus         3 ~~~~~~vYIL~~~~----g~lY~G~T~dl~rRl~qHn~g--~ga~~T~~~~~~p~~LVy-~e~f~~~~~Al~rE~~iK~~   75 (96)
T 1ywl_A            3 NKKSHYFYVLLCQD----GSFYGGYTTEPERRLTEHNSG--TGAKYTRLAKRRPVIMIH-TEKFETRSEATKAEAAFKKL   75 (96)
T ss_dssp             SSSSEEEEEEECTT----CCCEEEEESCHHHHHHHHHHH--HSCSSCSSCCSSCCEEEE-EEEESSHHHHHHHHHHHHHS
T ss_pred             CCCceEEEEEEcCC----CCEEEEEeCCHHHHHHHHHcC--CCCCcccccCCCCeEEEE-EEecCCHHHHHHHHHHHHcC
Confidence            35678999999976    899999999999999999986  5899999  999999997 79999999999999999998


Q ss_pred             CchhHHHHhh
Q 016815          121 MESLAVRQAA  130 (382)
Q Consensus       121 ~~sr~lr~~~  130 (382)
                      .+..+++-+.
T Consensus        76 ~R~~K~~LI~   85 (96)
T 1ywl_A           76 TRKQKEQYLK   85 (96)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHh
Confidence            8877776553

>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans}

Probab=99.91  E-value=5.4e-25  Score=185.18  Aligned_cols=80  Identities=26%  Similarity=0.457  Sum_probs=72.6

Q ss_pred             CCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCccccccCCCeeEEEEEeccCCHHHHHHHHHHhcCCCch
Q 016815           44 KGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMES  123 (382)
Q Consensus        44 ~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~~rPWemV~ivegF~sKseALqfEwawK~p~~s  123 (382)
                      +..||||||+|.+    |++|||+|+||.|||+|||+|  +||+||++++||+||+ +++|+++++|++|||+||++.+.
T Consensus         5 ~~~~~VYIL~~~~----g~lY~G~T~dl~rRl~qH~~g--~ga~~T~~~~p~~LVy-~e~f~~~~~Al~rE~~iK~~~R~   77 (107)
T 1zg2_A            5 PMNHYVYILECKD----GSWYTGYTTDVDRRIKKHASG--KGAKYTRGRGPFRLVA-TWAFPSKEEAMRWEYEVKHLSRR   77 (107)
T ss_dssp             -CCEEEEEEECTT----SCEEEEEECCHHHHHHHHHHH--TTCCSCCCCSSCEEEE-EEEESCHHHHHHHHHHHHHSCHH
T ss_pred             CCceEEEEEEcCC----CCEEEEEECCHHHHHHHHHcc--CCCCccccCCCCEEEE-EEecCCHHHHHHHHHHHhcCCHH
Confidence            4678999999976    899999999999999999986  5899999999999997 79999999999999999999888


Q ss_pred             hHHHHhh
Q 016815          124 LAVRQAA  130 (382)
Q Consensus       124 r~lr~~~  130 (382)
                      .+++-+.
T Consensus        78 ~K~~LI~   84 (107)
T 1zg2_A           78 KKEQLVS   84 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776554

>1mk0_A Intron-associated endonuclease 1; alpha/beta fold, catalytic domain, DNA-binding surface, hydrolase; HET: CIT; 1.60A {Enterobacteria phage T4} SCOP: d.226.1.1 PDB: 1ln0_A

Probab=96.24  E-value=0.0046  Score=49.75  Aligned_cols=68  Identities=13%  Similarity=0.303  Sum_probs=46.1

Q ss_pred             EEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCC---CCCccccc----cC-CCeeEEEEEeccCC-HHHHHHHHHHhc
Q 016815           48 ACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEI---RCGAVRTK----KR-RPWEMVLCIYGFPT-NVSALQFEWAWQ  118 (382)
Q Consensus        48 ~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~---~gGAk~Tr----~~-rPWemV~ivegF~s-KseALqfEwawK  118 (382)
                      +||++.+..   .|+.|||.|.|+..|+.+|....   .++.+...    .+ .-..+.. .+.++. +.+...+|..|.
T Consensus         4 GIY~I~n~~---ngk~YIGst~~l~~R~~~~~~~l~~g~~~n~~L~~a~~kyG~~F~~~i-Le~~~~~~~el~~~E~~~i   79 (97)
T 1mk0_A            4 GIYQIKNTL---NNKVYVGSAKDFEKRWKRHFKDLEKGCHSSIKLQRSFNKHGNVFECSI-LEEIPYEKDLIIERANFWI   79 (97)
T ss_dssp             EEEEEEETT---TCCEEEEEESSHHHHHHHHHHHHHHTCCSCHHHHHHHHHHSSCEEEEE-EEECCCCHHHHHHHHHHHH
T ss_pred             EEEEEEECC---CCCEEEEecCCHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcceEEEE-eeECCCCHHHHHHHHHHHH
Confidence            799999985   38999999999999999995311   11111111    11 3455543 566764 678888998887


Q ss_pred             C
Q 016815          119 H  119 (382)
Q Consensus       119 ~  119 (382)
                      .
T Consensus        80 ~   80 (97)
T 1mk0_A           80 K   80 (97)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}

Probab=95.43  E-value=0.039  Score=45.41  Aligned_cols=72  Identities=17%  Similarity=0.161  Sum_probs=49.8

Q ss_pred             hhccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHH
Q 016815           39 AKDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWA  116 (382)
Q Consensus        39 ~~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwa  116 (382)
                      ..+..|.--+||+++-.+   ..-+|||-+.|+.+|+++|=.+.  ...+++.  ..-..+-+  ....+..+||-.|..
T Consensus         8 ~l~~lP~~pGVY~~~d~~---g~vlYVGKAknLr~Rv~syf~~~--~~~k~~~m~~~~~~i~~--~~t~sE~eAlllE~~   80 (99)
T 1yd6_A            8 KLAVLPEQPGCYLMKDKH---GTVIYVGKAKSLKERVRSYFTGT--HDGKTQRLVEEIADFEY--IVTSSNAEALILEMN   80 (99)
T ss_dssp             HHHTCCSSCEEEEEECSS---CCEEEEEEESCHHHHHHGGGSSC--CCHHHHHHHHHCSEEEE--EECSSHHHHHHHHHH
T ss_pred             HHHhCCCCCeEEEEEcCC---CCEEEEecCcCHHHHHHHHcccC--CChHHHHHHHheeEEEE--EEECCHHHHHHHHHH
Confidence            345556677999999876   25799999999999999997542  2233432  12233443  244789999999977


Q ss_pred             h
Q 016815          117 W  117 (382)
Q Consensus       117 w  117 (382)
                      |
T Consensus        81 l   81 (99)
T 1yd6_A           81 L   81 (99)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A

Probab=94.89  E-value=0.046  Score=44.81  Aligned_cols=69  Identities=13%  Similarity=0.011  Sum_probs=48.2

Q ss_pred             hccCCCceEEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCcccccc--CCCeeEEEEEeccCCHHHHHHHHHHh
Q 016815           40 KDQQKGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAW  117 (382)
Q Consensus        40 ~~~~~~fy~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGAk~Tr~--~rPWemV~ivegF~sKseALqfEwaw  117 (382)
                      .+..|.--+||+.+- +   ..-+|||-+.|+.+|+++|-.+.   ..+++.  ..-..+.++  -..+..+||-.|..|
T Consensus         9 l~~lP~~pGVY~~~d-~---g~vlYVGKAknLr~Rv~syf~~~---~~k~~~~~~~~~~i~~~--~t~sE~eAlllE~~l   79 (96)
T 1yd0_A            9 ILLAPEEPGVYIFKN-K---GVPIYIGKAKRLSNRLRSYLNPQ---TEKVFRIGEEADELETI--VVMNEREAFILEANL   79 (96)
T ss_dssp             HHHCCSSCEEEEEEE-T---TEEEEEEEESSHHHHHHGGGSCS---SHHHHHHHHHCSEEEEE--ECSSHHHHHHHHHHH
T ss_pred             HHhCCCCCeEEEEEC-C---CeEEEEecCcCHHHHHHHHccCC---CHHHHHHHHhccEEEEE--EECCHHHHHHHHHHH
Confidence            444566668999998 6   14799999999999999997532   233432  122344442  457899999999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1mk0a_	97	Homing endonuclease I-TevI {Bacteriophage T4 [TaxI	97.73

>d1mk0a_ d.226.1.1 (A:) Homing endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a+b)
fold: GIY-YIG endonuclease
superfamily: GIY-YIG endonuclease
family: GIY-YIG endonuclease
domain: Homing endonuclease I-TevI
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.73  E-value=2.6e-05  Score=60.23  Aligned_cols=68  Identities=15%  Similarity=0.345  Sum_probs=45.4

Q ss_pred             EEEEeeeCCCCCCCcEEEEecCCHHHHHHHHhCCCCCCc---cccc----cC-CCeeEEEEEeccC-CHHHHHHHHHHhc
Q 016815           48 ACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEIRCGA---VRTK----KR-RPWEMVLCIYGFP-TNVSALQFEWAWQ  118 (382)
Q Consensus        48 ~VYLL~S~d~r~~gs~YIG~T~Dp~RRLrQHNg~~~gGA---k~Tr----~~-rPWemV~ivegF~-sKseALqfEwawK  118 (382)
                      +||++.+..   .|.+|||.|.|+.+|+.+|......+.   ....    ++ .-|.+.. .+.+. ++.+|+.+|..|-
T Consensus         4 GIY~i~n~~---ngk~YIG~t~nl~~R~~~h~~~~~~~~~~~~~l~~~~~k~g~~F~~~i-le~~~~~~~~l~~~E~~~I   79 (97)
T d1mk0a_           4 GIYQIKNTL---NNKVYVGSAKDFEKRWKRHFKDLEKGCHSSIKLQRSFNKHGNVFECSI-LEEIPYEKDLIIERANFWI   79 (97)
T ss_dssp             EEEEEEETT---TCCEEEEEESSHHHHHHHHHHHHHHTCCSCHHHHHHHHHHSSCEEEEE-EEECCCCHHHHHHHHHHHH
T ss_pred             EEEEEEECC---CCeEEEEEeCcHHHHHHHHHHHhhccCCccHHHHHHHHhccCcEEEEE-EEEcCCCHHHHHHHHHHHH
Confidence            699999976   389999999999999999953211111   1111    11 2355554 45554 5788999998875


Q ss_pred             C
Q 016815          119 H  119 (382)
Q Consensus       119 ~  119 (382)
                      .
T Consensus        80 ~   80 (97)
T d1mk0a_          80 K   80 (97)
T ss_dssp             H
T ss_pred             H
Confidence            3