Citrus Sinensis ID: 016940

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFLSIFQYLQIWLNLSSYRHLPTF
cccccEEEEEccHHHHccHHHHccccccEEEEEEEEEccccccccEEEEccccEEEEEEccccEEEEEccccccccccccccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccEEEccEEEcccccccEEEEEEccccEEEEEEcccEEEEEcccccccccccccccccccccccccccccEEEEEccccccEEEEEcccccEEEEEEcccccccccccccccEEEEEccccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEcEEEcccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccEEEEEEccccccEEEEEEcccccEEcc
cccccEEEEEEEEcccccEEEEccccccccccccccHHHHccccEEEEEEcccEEEEEEcccEEEEEEccccccccccccccccccEEEHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccHHHHHHHcccEEEEEEEccccEEEEEEcccccEEEEEccccccccccccccccccccEHHHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccHcccEEEEEEcccccccccc
mcqkraifkpmtEAERQDLKQKCGGSWKLVLRFLLAGEACcrrensqaiagpghsiavTSKGvvysfgsnssgqlghgtteeewrprpirslQGIRIIQAAAGAGRTmlisdagqvyafgkdsfgeaeygvqgtklvtspqlVESLKNIFVVQAAIGNFFTAVLSregrvytfswgndarlghhtepndvephpllgtlenipvVQIAAGYCYLLALacqpsgmavysvgcglggklghgsrtdekhprLIEQFQLLNLQPVVVAAGAWHAAVvgqdgrvctwgwgrygclghgneecesVPKVVQALNDVKAIhvatgdyttfvvsedgdvysfgcgesaslghnaiadGQVCSLLFLSIFQYLQIWLNlssyrhlptf
mcqkraifkpmteaerqdlkqkcGGSWKLVLRFLLAGEACCRRENsqaiagpghsiAVTSKGVVYSFGsnssgqlghgtteeewrprpIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFLSIFQYLQIWLNLSsyrhlptf
MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLqgiriiqaaagagrTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIaagycyllalacQPSGMAVYSVgcglggklghgSRTDEKHPRLIEQFQLLNLQPvvvaagawhaavvGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFLSIFQYLQIWLNLSSYRHLPTF
*********************KCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFG*******************PIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGS****KHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFLSIFQYLQIWLNLSSYR*****
******************LKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFLSIFQYLQIWLNLSSYRHLPTF
MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSN**************RPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFLSIFQYLQIWLNLSSYRHLPTF
*CQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFLSIFQYLQIWLNLSSYRHL**F
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MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLFLSIFQYLQIWLNLSSYRHLPTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query380 2.2.26 [Sep-21-2011]
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.744 0.267 0.332 2e-28
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.760 0.273 0.322 2e-28
Q9FN03440 Ultraviolet-B receptor UV no no 0.75 0.647 0.293 3e-28
Q5GLZ8 1057 Probable E3 ubiquitin-pro yes no 0.744 0.267 0.328 6e-28
Q15034 1050 Probable E3 ubiquitin-pro no no 0.765 0.277 0.326 1e-27
O95714 4834 E3 ubiquitin-protein liga no no 0.826 0.064 0.329 1e-26
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.826 0.064 0.326 1e-26
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.742 0.057 0.309 9e-25
Q15751 4861 Probable E3 ubiquitin-pro no no 0.765 0.059 0.282 4e-23
Q8IVU3 1022 Probable E3 ubiquitin-pro no no 0.755 0.280 0.298 9e-23
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function desciption
 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 151/298 (50%), Gaps = 15/298 (5%)

Query: 51  GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLI 110
           G  H++ V   G VY+ G N  GQLGH  + +  +P  + +L    I+  A G   T+ +
Sbjct: 42  GLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRK--KPEQVVALDAQNIVAVACGEAHTLAL 99

Query: 111 SDAGQVYAFGKDSFGEAEYGVQGTK-LVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 169
           +D GQVYA+G DS G+   G+QG++  +  P+ ++SL +I +VQ A G + +  LS+   
Sbjct: 100 NDKGQVYAWGLDSDGQL--GLQGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASE 157

Query: 170 VYTFSWGNDA--RLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 227
           V  F WG +   +LG   +        L+ +L  IP +Q+AAG  +   L    SG A++
Sbjct: 158 V--FCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTL--SG-AIF 212

Query: 228 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGR 287
             G    G+LG     D   P L++   L + + V +  G  H A + ++G V T+G G 
Sbjct: 213 GWGRNKFGQLGLNDENDRYVPNLLKS--LRSQKIVYICCGEDHTAALTKEGGVFTFGAGG 270

Query: 288 YGCLGHGNEECESVPKVVQALNDVKAIHVATG-DYTTFVVSEDGDVYSFGCGESASLG 344
           YG LGH +   E  P+ V  L       VA G  +T+  V   G +YSFG G +  LG
Sbjct: 271 YGQLGHNSTSHEINPRKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLG 328
Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
224135099 538 predicted protein [Populus trichocarpa] 0.926 0.654 0.920 0.0
255547958 537 RCC1 and BTB domain-containing protein, 0.865 0.612 0.930 0.0
147784312 541 hypothetical protein VITISV_008041 [Viti 0.892 0.626 0.900 0.0
225424560 534 PREDICTED: probable E3 ubiquitin-protein 0.892 0.634 0.897 0.0
359473138 526 PREDICTED: probable E3 ubiquitin-protein 0.892 0.644 0.897 0.0
356567464 535 PREDICTED: probable E3 ubiquitin-protein 0.884 0.628 0.883 0.0
357463175 535 RCC1 domain-containing protein [Medicago 0.892 0.633 0.872 0.0
357463177432 RCC1 domain-containing protein [Medicago 0.892 0.784 0.872 0.0
356540207 530 PREDICTED: probable E3 ubiquitin-protein 0.913 0.654 0.866 0.0
77554672439 regulator of chromosome condensation, pu 0.926 0.801 0.846 0.0
>gi|224135099|ref|XP_002321983.1| predicted protein [Populus trichocarpa] gi|222868979|gb|EEF06110.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/352 (92%), Positives = 335/352 (95%)

Query: 1   MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTS 60
           MCQKRAIFKPMT  ERQDLKQ+CGGSWKLVLRFLLAGEACCRRE SQAIAGPGHSIAVTS
Sbjct: 107 MCQKRAIFKPMTPEERQDLKQRCGGSWKLVLRFLLAGEACCRRERSQAIAGPGHSIAVTS 166

Query: 61  KGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 120
            GV YSFGSNSSGQLGHGTTEEEWRPR IRSLQGIRIIQAAAG GRTMLISDAG+VYAFG
Sbjct: 167 NGVAYSFGSNSSGQLGHGTTEEEWRPRQIRSLQGIRIIQAAAGPGRTMLISDAGEVYAFG 226

Query: 121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAR 180
           KDSFGEAEYGVQGTK VT+PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGND +
Sbjct: 227 KDSFGEAEYGVQGTKTVTTPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDGK 286

Query: 181 LGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHG 240
           LGH TEPNDV PHPLLG LENIPVVQIAAGYCYLLALACQPSGM+VYSVGCGLGGKLGHG
Sbjct: 287 LGHQTEPNDVVPHPLLGALENIPVVQIAAGYCYLLALACQPSGMSVYSVGCGLGGKLGHG 346

Query: 241 SRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 300
           SRTDEK+PRLIEQFQLLNLQP+VVAAGAWHAAVVG+DGRVCTWGWGRYGCLGHGNEECES
Sbjct: 347 SRTDEKYPRLIEQFQLLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECES 406

Query: 301 VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQ 352
           VPKVV AL+ VKA+HVATGDYTTFVVS+DGDVYSFGCGESASLGHN   DGQ
Sbjct: 407 VPKVVDALSKVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNGDGDGQ 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547958|ref|XP_002515036.1| RCC1 and BTB domain-containing protein, putative [Ricinus communis] gi|223546087|gb|EEF47590.1| RCC1 and BTB domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147784312|emb|CAN77314.1| hypothetical protein VITISV_008041 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424560|ref|XP_002285332.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 1 [Vitis vinifera] gi|296081404|emb|CBI16837.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473138|ref|XP_003631252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567464|ref|XP_003551939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|357463175|ref|XP_003601869.1| RCC1 domain-containing protein [Medicago truncatula] gi|355490917|gb|AES72120.1| RCC1 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357463177|ref|XP_003601870.1| RCC1 domain-containing protein [Medicago truncatula] gi|355490918|gb|AES72121.1| RCC1 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356540207|ref|XP_003538581.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|77554672|gb|ABA97468.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] gi|77554673|gb|ABA97469.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] gi|108862485|gb|ABG21962.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] gi|108862486|gb|ABG21963.1| regulator of chromosome condensation, putative, expressed [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
TAIR|locus:2092190532 AT3G26100 [Arabidopsis thalian 0.926 0.661 0.704 4.8e-133
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.886 0.690 0.298 2.1e-27
UNIPROTKB|G3MX12 4757 HERC2 "Uncharacterized protein 0.752 0.060 0.25 1.5e-19
UNIPROTKB|E1B782 4847 HERC2 "Uncharacterized protein 0.752 0.059 0.25 1.5e-19
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.752 0.059 0.25 5.8e-20
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.752 0.059 0.25 5.8e-20
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.752 0.059 0.25 7.3e-20
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.752 0.059 0.25 7.4e-20
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.752 0.059 0.25 9.4e-20
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.752 0.059 0.253 2.2e-20
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
 Identities = 248/352 (70%), Positives = 275/352 (78%)

Query:     1 MCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTS 60
             MC KR IFKPM E ERQ++K++CGGSWKLVLRFLLAGEACCRRE SQA+AGPGHS+AVTS
Sbjct:   101 MCNKRVIFKPMNEEERQEMKRRCGGSWKLVLRFLLAGEACCRREKSQAVAGPGHSVAVTS 160

Query:    61 KGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFG 120
             KG VY+FG N+SGQLGHG TE+E R +P+RSL              TMLISD G+VYA G
Sbjct:   161 KGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVYACG 220

Query:   121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAR 180
             K+SFGEAEYG QGTK VT+PQLV SLKNIFVVQAAIGN+FTAVLSREG+VYTFSWGND R
Sbjct:   221 KESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGR 280

Query:   181 LGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXX 240
             LGH TE  DVEP PLLG LEN+PVVQI            QP+GM+VYSV           
Sbjct:   281 LGHQTEAADVEPRPLLGPLENVPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHG 340

Query:   241 SRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECES 300
             SRTDEK+PR+IEQFQ+LNLQP             GQDGRVCTWGWGRYGCLGHGNEECES
Sbjct:   341 SRTDEKYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 400

Query:   301 VPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQ 352
             VPKVV+ L+ VKA+HVATGDYTTFVVS+DGDVYSFGCGESASLGH+   D Q
Sbjct:   401 VPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQ 452
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3MX12 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1B782 HERC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-24
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-22
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-20
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-12
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-06
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 9e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.001
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  104 bits (262), Expect = 1e-24
 Identities = 84/332 (25%), Positives = 140/332 (42%), Gaps = 55/332 (16%)

Query: 54  HSIAVTSKGVVYSFGSNSSGQLGHGTTEE-EWRPR--PIRSLQGIRIIQAAAGAGRTMLI 110
           H+  +     VYS+GSN   +LG G  E    RP+  P   +    II+ A G   ++ +
Sbjct: 60  HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGL 119

Query: 111 SDAGQVYAFGKDSFGEAEYGVQGTK--------------LVTSPQLVE----SLKNIFVV 152
              G +Y++G +  G     +                  L ++P  V     +  ++ VV
Sbjct: 120 DHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179

Query: 153 QAAIGNFFTAVLSREGRVYTFSWG----NDARLGHHTEPND--VEPHPLLGTLENIPVVQ 206
           + A G   + +L+ +GRVY  SWG     +   G +       ++  PL    + I  VQ
Sbjct: 180 KLACGWEISVILTADGRVY--SWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAI--VQ 235

Query: 207 IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL--LNLQPVV- 263
           +AAG  +L+AL    +   VY  G    G+LG             E+ +L  L   P   
Sbjct: 236 LAAGADHLIALT---NEGKVYGWGSNQKGQLG---------RPTSERLKLVVLVGDPFAI 283

Query: 264 -----VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECE----SVPKVVQALNDVKAI 314
                VA G  H+  + +DG +  WG   +G LG G++       + P   Q L+ V   
Sbjct: 284 RNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTIC 343

Query: 315 HVATGDYTTFVVSEDGDVYSFGCGESASLGHN 346
            ++ G+  + ++ +DG +Y+FG G+   LG  
Sbjct: 344 SISAGESHSLILRKDGTLYAFGRGDRGQLGIQ 375

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 380
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.93
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.92
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.83
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.29
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.25
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.14
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.11
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.05
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.89
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 94.53
KOG0315311 consensus G-protein beta subunit-like protein (con 93.41
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.29
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 92.76
KOG0315311 consensus G-protein beta subunit-like protein (con 92.37
KOG3669 705 consensus Uncharacterized conserved protein, conta 92.21
KOG0278334 consensus Serine/threonine kinase receptor-associa 92.02
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 91.86
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 90.16
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 87.97
KOG0646 476 consensus WD40 repeat protein [General function pr 87.9
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 86.72
KOG0649325 consensus WD40 repeat protein [General function pr 85.58
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 85.18
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 83.8
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 82.72
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-46  Score=344.27  Aligned_cols=307  Identities=26%  Similarity=0.399  Sum_probs=250.1

Q ss_pred             eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCC----------------CCccceeeccC----CCCCcEEEEEe
Q 016940           43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT----------------EEEWRPRPIRS----LQGIRIIQAAA  102 (380)
Q Consensus        43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~----------------~~~~~p~~v~~----~~~~~I~~V~~  102 (380)
                      ..|++++||.+|+++|+.||+||+||.|..|+||.-..                +....|..++.    ....+|+++.|
T Consensus       104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c  183 (476)
T COG5184         104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC  183 (476)
T ss_pred             eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence            47889999999999999999999999999999998651                12456777775    22347999999


Q ss_pred             CCCceEEEecCCcEEEeeCCCCCCCccCCCCce----eecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCC
Q 016940          103 GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTK----LVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGND  178 (380)
Q Consensus       103 g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~----~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~  178 (380)
                      |+.++++++++|+||+||.+..+.++.+.....    ....|..+.   ...|+++++|.+|.++|+++|++|.||.|..
T Consensus       184 g~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qk  260 (476)
T COG5184         184 GWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQK  260 (476)
T ss_pred             CCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcc
Confidence            999999999999999999999988887743333    335555554   3569999999999999999999999999999


Q ss_pred             CccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCC----CCCCeeeeee
Q 016940          179 ARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD----EKHPRLIEQF  254 (380)
Q Consensus       179 gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~----~~~p~~~~~~  254 (380)
                      ||||.........+..+..++.-..|+.|+||.+|+++|.+  +| +||+||.|.++|++.++...    ...|.....+
T Consensus       261 gqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~--~G-~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~  337 (476)
T COG5184         261 GQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDE--DG-EIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL  337 (476)
T ss_pred             cccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcC--CC-eEEEeccchhcccccCcccccceeeccccccccC
Confidence            99999887766656555544444458899999999999999  99 99999999999999982211    1112221111


Q ss_pred             ecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCC--CCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCE
Q 016940          255 QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN--EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDV  332 (380)
Q Consensus       255 ~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~--~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v  332 (380)
                        ....|.++++|..|+++|..+|.||+||.+..+|||...  +.....|.++..  ..++.+++||..|+++.+.+|++
T Consensus       338 --~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~--~~~~~~v~~gt~~~~~~t~~gsv  413 (476)
T COG5184         338 --SGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV--AIKLEQVACGTHHNIARTDDGSV  413 (476)
T ss_pred             --CCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCcccccc--ccceEEEEecCccceeeccCCce
Confidence              233478999999999999999999999999999999988  555555555532  34699999999999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCccchhhh
Q 016940          333 YSFGCGESASLGHNAIADGQVCSLLFL  359 (380)
Q Consensus       333 ~~wG~n~~gqlG~~~~~~~~~~~~~~~  359 (380)
                      |+||+|++|+||.++.......+++..
T Consensus       414 y~wG~ge~gnlG~g~~~~~~~~pt~i~  440 (476)
T COG5184         414 YSWGWGEHGNLGNGPKEADVLVPTLIR  440 (476)
T ss_pred             EEecCchhhhccCCchhhhcccccccc
Confidence            999999999999999988876666555

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-16
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-06
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-16
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-06
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-16
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 2e-06
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-16
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 1e-07
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 7e-16
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-06
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 3e-06
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-04
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 3e-06
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 4e-04
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 6e-06
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 125/296 (42%), Gaps = 11/296 (3%)
Query: 51  GPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTML 109
           G  H++A +  G+ VYS+G    G+LGHG + + + P PI++L               + 
Sbjct: 64  GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA 123
Query: 110 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGR 169
           ++  G+V ++G++  G+   G     LV  PQ +++ + I +   A G   TA ++ +G 
Sbjct: 124 VTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQAFEGIRIKMVAAGAEHTAAVTEDGD 181
Query: 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQIXXXXXXXXXXXXQPSGMAVYS 228
           +Y + WG    LG     + + P  +  T  E + +V                   A+Y+
Sbjct: 182 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG-----ALYT 236
Query: 229 VXXXXXXXXXXXSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRY 288
                          D   P  +E   L N                  DG++  WGW ++
Sbjct: 237 YGWSKYGQLGHGDLEDHLIPHKLE--ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF 294
Query: 289 GCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
           G +G GN   +  P  V+  +D K + V+ G   T  V+E  +V+++G G +  LG
Sbjct: 295 GQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 350
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-95
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-79
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-72
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-56
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-24
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-95
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-77
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-75
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-59
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-15
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 9e-72
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-63
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-60
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-51
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-44
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-18
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-71
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-69
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-60
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-46
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 6e-26
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-68
3of7_A473 Regulator of chromosome condensation; beta-propell 5e-61
3of7_A473 Regulator of chromosome condensation; beta-propell 9e-45
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-36
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-30
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-21
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-21
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-16
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-11
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  288 bits (740), Expect = 3e-95
 Identities = 84/306 (27%), Positives = 142/306 (46%), Gaps = 8/306 (2%)

Query: 47  QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGR 106
              +    ++     G +Y +G N  GQLG     +   P P  +L  +R +Q   G   
Sbjct: 5   HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQT 64

Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVL 164
              ++  G++YA G  + G    G+ GT+ V++P L+ES++++F+ + A+  G      L
Sbjct: 65  LFAVTADGKLYATGYGAGGR--LGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122

Query: 165 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGM 224
           S EG VY++    D +LGH        P  +   L  I VV +AAG  +   +    +  
Sbjct: 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVT---AAG 178

Query: 225 AVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWG 284
            +Y+ G G  G+LGH    D+  P+L+E  Q   +  +   +G      +  D  V +WG
Sbjct: 179 DLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238

Query: 285 WGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 344
            G YG LG G  +   VP  + +L  +  + V  G   +  +++ G VY++G G+   LG
Sbjct: 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLG 298

Query: 345 HNAIAD 350
           H +   
Sbjct: 299 HGSDDH 304
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.16
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.89
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.6
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 96.34
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.32
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 96.15
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.01
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 95.58
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 95.39
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 95.22
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.18
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 94.58
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.24
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 93.96
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 93.94
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 92.96
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 92.5
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 91.8
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 91.24
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 90.34
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 89.39
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 89.27
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 89.04
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 88.57
2aq5_A 402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 86.99
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 86.86
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 86.84
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 86.69
4aez_A 401 CDC20, WD repeat-containing protein SLP1; cell cyc 86.5
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 86.34
2xyi_A430 Probable histone-binding protein CAF1; transcripti 86.23
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 86.16
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 83.74
3jro_A 753 Fusion protein of protein transport protein SEC13 83.61
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 83.56
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 83.32
3jrp_A379 Fusion protein of protein transport protein SEC13 83.06
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 82.96
3jrp_A379 Fusion protein of protein transport protein SEC13 82.89
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 82.88
4g56_B357 MGC81050 protein; protein arginine methyltransfera 81.69
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=9.8e-66  Score=498.02  Aligned_cols=338  Identities=27%  Similarity=0.489  Sum_probs=302.1

Q ss_pred             CChHHHHhhhhhcCCCceeEEEEEeecce---------------------------EeeeeceEEecCCCeEEEEecCC-
Q 016940           11 MTEAERQDLKQKCGGSWKLVLRFLLAGEA---------------------------CCRRENSQAIAGPGHSIAVTSKG-   62 (380)
Q Consensus        11 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------------------~~~~~i~~i~~G~~~~~~l~~~G-   62 (380)
                      +.+...++++++||+.|++++..  ++++                           +...+|++|+||..|+++|+++| 
T Consensus        11 v~~~~~~v~~ia~G~~hs~al~~--~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg   88 (406)
T 4d9s_A           11 VTAPPRKVLIISAGASHSVALLS--GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGM   88 (406)
T ss_dssp             ----CCCEEEEEECSSEEEEEET--TTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTT
T ss_pred             CCCCccceEEEecCCCeEEEEEe--CCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCC
Confidence            33444688999999999999875  2211                           11137999999999999999986 


Q ss_pred             cEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCCCCCCCccCCCCceeecCCee
Q 016940           63 VVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQL  142 (380)
Q Consensus        63 ~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n~~gqlG~~~~~~~~~~~p~~  142 (380)
                      +||+||.|.+||||.++......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.  ......|+.
T Consensus        89 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~p~~  166 (406)
T 4d9s_A           89 EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLVPQK  166 (406)
T ss_dssp             EEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--CCCEEEEEE
T ss_pred             EEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCC--CCCcccceE
Confidence            999999999999999999888899999999888999999999999999999999999999999999987  556677999


Q ss_pred             ecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcccccccccccCCCCEEEEEecCCceEEEEEeCC
Q 016940          143 VESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPS  222 (380)
Q Consensus       143 v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~v~~~~~~~~i~~i~~g~~~~~~l~~~~~  222 (380)
                      +..+.+.+|++|+||.+|+++|+++|+||+||+|.++|||.+.......|.++.. +...+|++|+||.+|+++|+.  +
T Consensus       167 v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~i~~va~G~~ht~~l~~--~  243 (406)
T 4d9s_A          167 IQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGGEKMSMVACGWRHTISVSY--S  243 (406)
T ss_dssp             CGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCC-STTCCEEEEEECSSEEEEEET--T
T ss_pred             ecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecc-cCCceEEEEEECCCcEEEEcC--C
Confidence            9888888999999999999999999999999999999999999888888988876 667889999999999999998  9


Q ss_pred             CCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEccCceEEEEeCCCCEEEEeCCCCCCccCCCCCCcccc
Q 016940          223 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVP  302 (380)
Q Consensus       223 G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqLG~~~~~~~~~p  302 (380)
                      | +||+||.|.++|||.++......|.++..+  .+.+|++|+||.+|++||+++|+||+||+|.+||||.++......|
T Consensus       244 G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p  320 (406)
T 4d9s_A          244 G-ALYTYGWSKYGQLGHGDLEDHLIPHKLEAL--SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP  320 (406)
T ss_dssp             C-CEEEEECCTTSTTCSSSCCCEEEEEECGGG--TTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred             C-CEEEeeCCCCCCCCCCCCcCccccEEeccc--CCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccC
Confidence            9 999999999999999988777778877654  3457999999999999999999999999999999999998888899


Q ss_pred             EEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCCCCCCCCccchhh
Q 016940          303 KVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQVCSLLF  358 (380)
Q Consensus       303 ~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~  358 (380)
                      .++..+.+.+|++|+||.+|+++|+++|+||+||+|++||||++...+...|..+.
T Consensus       321 ~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~  376 (406)
T 4d9s_A          321 VQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIE  376 (406)
T ss_dssp             EEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred             EEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEee
Confidence            99987777889999999999999999999999999999999999988776654443
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 380
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-24
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-18
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-12
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-11
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-09
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 8e-08
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 8e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-04
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 1e-24
 Identities = 78/320 (24%), Positives = 132/320 (41%), Gaps = 22/320 (6%)

Query: 47  QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGR 106
           QA AG  H++ ++  G VYSFG N  G LG  T+ E     P +     +++Q +AG   
Sbjct: 51  QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSH 110

Query: 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR 166
           T  ++D G+V+ +G         G+    +  S   V+   ++ VV+ A GN    +L+ 
Sbjct: 111 TAALTDDGRVFLWGSFRDNNGVIGLLEP-MKKSMVPVQVQLDVPVVKVASGNDHLVMLTA 169

Query: 167 EGRVYTFSWGNDARLGHHTE---------------PNDVEPHPLLGTLENIPVVQIAAGY 211
           +G +YT   G   +LG   E                         G+  ++       G 
Sbjct: 170 DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 229

Query: 212 CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHA 271
            +  A++ +     VY  G     +LG         P+ +  F+      V  + G  H 
Sbjct: 230 YFTFAISHEGH---VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 286

Query: 272 AVVGQDGRVCTWGWGRYGCLGHGNEECE-SVPKVVQALNDVKAIHVATGDYTTFVVSEDG 330
             +  +G+  + G   YG LG G    E S+P ++  L  V ++  A G    + V++DG
Sbjct: 287 VCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSV--ACGASVGYAVTKDG 344

Query: 331 DVYSFGCGESASLGHNAIAD 350
            V+++G G +  LG     D
Sbjct: 345 RVFAWGMGTNYQLGTGQDED 364
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.79
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.02
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.08
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 93.47
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 92.93
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 92.86
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 91.46
d1wp5a_323 Topoisomerase IV subunit A, ParC, C-terminal domai 90.48
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 88.74
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 87.36
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 86.02
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 83.7
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 81.13
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-51  Score=392.56  Aligned_cols=315  Identities=25%  Similarity=0.384  Sum_probs=261.3

Q ss_pred             eeceEEecCCCeEEEEecCCcEEEeeCCCCCCcCCCCCCCccceeeccCCCCCcEEEEEeCCCceEEEecCCcEEEeeCC
Q 016940           43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD  122 (380)
Q Consensus        43 ~~i~~i~~G~~~~~~l~~~G~v~~~G~n~~gqlG~~~~~~~~~p~~v~~~~~~~I~~V~~g~~~~~~lt~~G~vy~~G~n  122 (380)
                      .+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.+.......+|++|+||..|+++++++|+||+||.+
T Consensus        47 ~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~  126 (401)
T d1a12a_          47 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSF  126 (401)
T ss_dssp             SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred             CCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecccccceeeccccccceecccc
Confidence            57999999999999999999999999999999999988777766666666677999999999999999999999999998


Q ss_pred             CCCCCccCCCCceeecCCeeecccCCccEEEEeeCCCeEEEEecCCcEEEEEeCCCCccCCCCCCCcc-----------c
Q 016940          123 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDV-----------E  191 (380)
Q Consensus       123 ~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~-----------~  191 (380)
                      ..++.+...... ....+..+....+.+|++|++|..|+++++++|++|+||.|.++|+|........           .
T Consensus       127 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~  205 (401)
T d1a12a_         127 RDNNGVIGLLEP-MKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLV  205 (401)
T ss_dssp             EETTEEEESSBB-TBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHS
T ss_pred             ccccccccccCC-ccccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCccccccccc
Confidence            777765543222 2222333334445679999999999999999999999999999999976543221           1


Q ss_pred             cccccc----ccCCCCEEEEEecCCceEEEEEeCCCCEEEEEecCCCCccCCCCCCCCCCCeeeeeeecCCCccEEEEcc
Q 016940          192 PHPLLG----TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG  267 (380)
Q Consensus       192 p~~v~~----~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G  267 (380)
                      |..+..    .....+|.+|+||.+|+++|+.  +| +||+||.|.++++|.........+..+..+......++.+++|
T Consensus       206 p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~--~g-~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g  282 (401)
T d1a12a_         206 PKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH--EG-HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG  282 (401)
T ss_dssp             CEECCCBCSSCCSBCCEEEEEEETTEEEEEET--TC-CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC
T ss_pred             cceeeccccCCCCCceEEEEEecCCeEEEEec--CC-eEeeecccceecccccccccceeccccccccccceeEEEEeee
Confidence            222211    1334579999999999999998  99 9999999999999998777766666666666666789999999


Q ss_pred             CceEEEEeCCCCEEEEeCCCCCCccCCC-CCCccccEEecccCCCcEEEEEecCCeEEEEeeCCCEEEEECCCCCCCCCC
Q 016940          268 AWHAAVVGQDGRVCTWGWGRYGCLGHGN-EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHN  346 (380)
Q Consensus       268 ~~h~~~lt~~g~vy~wG~n~~gqLG~~~-~~~~~~p~~i~~~~~~~i~~i~~G~~~t~~l~~~g~v~~wG~n~~gqlG~~  346 (380)
                      ..|+++++++|+||+||.|.++|||.++ ......|.+++.+.  +|++|+||.+|+++|+++|+||+||+|.+||||+|
T Consensus       283 ~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~--~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G  360 (401)
T d1a12a_         283 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTG  360 (401)
T ss_dssp             SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred             ccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCC--CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCC
Confidence            9999999999999999999999999987 45567788887654  69999999999999999999999999999999999


Q ss_pred             CCCCCCccchhhhhhhh
Q 016940          347 AIADGQVCSLLFLSIFQ  363 (380)
Q Consensus       347 ~~~~~~~~~~~~~~~~~  363 (380)
                      ...+...|.++.....+
T Consensus       361 ~~~~~~~P~~v~~~~~~  377 (401)
T d1a12a_         361 QDEDAWSPVEMMGKQLE  377 (401)
T ss_dssp             SCSCEEEEEECCSTTTT
T ss_pred             CCCCEecCEEeeccCCC
Confidence            98887777776554443
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure