Citrus Sinensis ID: 016982

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYHL
Secondary Structure (PSIPRED)
ccccEEEcccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEEEcccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEEccccEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEEccccccEEEHHccccccccEEEEEEccccEEEEEEccccEEEEEEEEEEcccccccccccccccccccEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccEEEEEEEccccccccccccccccccccHccHHHHcccccccccccccccccccccccEEEEEEEEcccccccEEEEEcccccEEEEEEcccHHHHccccc
Coil and Loop (DISEMBL)
MAAIAVHQFAQCItchawspdhamvafcpnnneVHIYKLIQEKWEKLHVLQKHdqivsgidwsvrsnrivtvshdrnsyvwnqegsewvPTLVILRLNRAAlcvqwspkenkfavgsgaKTVCICYYEQENNWWVSKLIRKrhdssvtsvawhpnnvflattstdgkcrvFSTFikgvdikekkegtssdtkFGEQILQLDLsfswafgvkwspsgntlayvghnsmiyfvddvgpsplaqnvafrdlplrdvlFVSEKMVIgvgfdcnpmvfaadETGIWTFIKFLderktsssgpkygsqfSEAFGKlygqskygvgndavessrtrggthvncinCIVPlreagssritrfttsgldgkivtWDLESQEDLLNYHL
Flexible Loop (DISEMBL)
MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQivsgidwsvrsNRIVTVShdrnsyvwnqegsewVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSvtsvawhpnnvflattstdgkcRVFSTfikgvdikekkegtssdtKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVEssrtrggthvnCINCIVPlreagssritrfttsgldgkivtwdlesqedllnyhl
Low Complexity Region (SEG)
MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYHL
Disordered region (IsUnstruct)
***IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIK**********KFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLD*****************AFGKLYGQSKYGVGND******TRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE**********
Disordered Region (DISOPRED)
*AAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSS*************KLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED*L****
Disordered Region (DISEMBL)
MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDER********YGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYHL
Disordered Region (DISPRO)
*AAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDE*******************************D*****RTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
O96622	369	Actin-related protein 2/3	yes	no	0.952	0.978	0.440	2e-87
Q9WV32	372	Actin-related protein 2/3	yes	no	0.944	0.962	0.426	4e-79
O88656	372	Actin-related protein 2/3	yes	no	0.944	0.962	0.421	3e-78
O15143	372	Actin-related protein 2/3	yes	no	0.944	0.962	0.421	3e-78
Q9R0Q6	370	Actin-related protein 2/3	no	no	0.944	0.967	0.438	2e-77
Q99PD4	370	Actin-related protein 2/3	no	no	0.944	0.967	0.435	8e-77
Q92747	370	Actin-related protein 2/3	no	no	0.944	0.967	0.435	1e-76
Q1JP79	370	Actin-related protein 2/3	yes	no	0.944	0.967	0.435	2e-76
Q58CQ2	372	Actin-related protein 2/3	no	no	0.944	0.962	0.415	3e-76
P78774	377	Actin-related protein 2/3	yes	no	0.920	0.925	0.358	3e-57

>sp|O96622|ARPC1_DICDI Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA PE=1 SV=1

 Score =  323 bits (827), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 164/372 (44%), Positives = 233/372 (62%), Gaps = 11/372 (2%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           M+A  +   A CIT HAW+ D + VA CPNNNEVHIY      W   HVL +HDQ+V+ I
Sbjct: 1   MSAFEIEHLASCITAHAWNADRSRVALCPNNNEVHIYAKQGTSWVVEHVLAEHDQLVTSI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DW+ ++NRI+T S DRN+YVW  +  +W P LV+LR+NRAA  V+WSP+ENKFAV +GAK
Sbjct: 61  DWAPKTNRILTSSQDRNAYVWTFKDGQWKPVLVLLRINRAATHVKWSPQENKFAVATGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
            VCIC++E+E++WW S  I K+H S+V  V WHPNN+ LAT+S+D K RVF  +IK  D 
Sbjct: 121 LVCICFFEEEHDWWASNHI-KKHKSTVLKVDWHPNNLLLATSSSDYKVRVFDAYIKKADG 179

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           +        +  FGE + + D   SW   +KWSPSG+TLAY  H+ +    +     P  
Sbjct: 180 RSVTR-PYGEVAFGEPVFEFDQCASWVHALKWSPSGSTLAYSSHDGVFAVANFSTNPPTI 238

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           + +  R+LPLRD+L+++E  + GVG+DC P++   ++ G W +   +D  K S  G   G
Sbjct: 239 EKLRVRNLPLRDLLYITENSIAGVGYDCAPLLI-TNQNG-WKYSGEMD--KASEGGAAAG 294

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           S+ S    KL+ Q+K  +G ++  + +     H NCI  IVP +  G   ++ F+TSGLD
Sbjct: 295 SETSAR--KLF-QNKVDLG-ESKSADKKLTTVHQNCITSIVPFKSVGGV-VSDFSTSGLD 349

Query: 361 GKIVTWDLESQE 372
           G IV W +++ E
Sbjct: 350 GNIVVWHVKALE 361

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B OS=Mus musculus GN=Arpc1b PE=1 SV=4

 Score =  295 bits (755), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/380 (42%), Positives = 225/380 (59%), Gaps = 22/380 (5%)

Query: 4   IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW K+H L++H+  V+GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct: 61  APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            ICY+EQEN+WWV K I+K   S+V S+ WHPNNV LA  S D KCR+FS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                 S   FGE + +   S  W  GV +S SG+ +A+V H+S +  VD      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMAVA-T 239

Query: 243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGI-WTFIKFLDERKTSSSGPKYGS 301
           +A   LPL  V F++E  ++  G DC P++F  D   +  +F   LD  K SS   + G 
Sbjct: 240 LASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQSS---QRGM 296

Query: 302 QFSEAFGKL------YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT 355
              E F  L       G +  G G D++         H N ++ I  L   G ++ ++F 
Sbjct: 297 TARERFQNLDKKASSEGGAATGAGLDSL---------HKNSVSQISVL-SGGKAKCSQFC 346

Query: 356 TSGLDGKIVTWDLESQEDLL 375
           T+G+DG +  WD++S E  L
Sbjct: 347 TTGMDGGMSIWDVKSLESAL 366

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Mus musculus (taxid: 10090)

>sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B OS=Rattus norvegicus GN=Arpc1b PE=2 SV=3

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 160/380 (42%), Positives = 224/380 (58%), Gaps = 22/380 (5%)

Query: 4   IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW K+H L++H+  V+GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct: 61  APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            ICY+EQEN+WWV K I+K   S+V S+ WHPNNV LA  S D KCR+FS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                 S   FGE + +   S  W  GV +S  G+ +A+V H+S +  VD      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVA-T 239

Query: 243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGS 301
           +A   LPL  + F++E  ++  G DC P++F  D   G  +F   LD  K +S   + G 
Sbjct: 240 LASETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGTLSFGGRLDVPKQNS---QRGL 296

Query: 302 QFSEAFGKL------YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT 355
              E F  L       G +  G G D++         H N ++ I  L   G ++ ++F 
Sbjct: 297 TARERFQNLDKKASSEGGAATGAGLDSL---------HKNSVSQISVL-SGGKAKCSQFC 346

Query: 356 TSGLDGKIVTWDLESQEDLL 375
           T+G+DG +  WD++S E  L
Sbjct: 347 TTGMDGGMSIWDVKSLESAL 366

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Rattus norvegicus (taxid: 10116)

>sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 160/380 (42%), Positives = 225/380 (59%), Gaps = 22/380 (5%)

Query: 4   IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW K+H L++H+  V+GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW 60

Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct: 61  APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            ICY+EQEN+WWV K I+K   S+V S+ WHPNNV LA  S D KCR+FS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                 S   FGE + +   S  W  GV +S SG+ +A+V H+S +   D      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA-T 239

Query: 243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD-ETGIWTFIKFLDERKTSSSGPKYGS 301
           +A   LPL  + F+++  ++  G DC P++F  D   G+ +F   LD  K SS   + G 
Sbjct: 240 LASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSS---QRGL 296

Query: 302 QFSEAFGKL------YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT 355
              E F  L       G +  G G D++         H N ++ I  L   G ++ ++F 
Sbjct: 297 TARERFQNLDKKASSEGGTAAGAGLDSL---------HKNSVSQISVL-SGGKAKCSQFC 346

Query: 356 TSGLDGKIVTWDLESQEDLL 375
           T+G+DG +  WD++S E  L
Sbjct: 347 TTGMDGGMSIWDVKSLESAL 366

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Homo sapiens (taxid: 9606)

>sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A OS=Mus musculus GN=Arpc1a PE=1 SV=1

 Score =  290 bits (741), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/372 (43%), Positives = 219/372 (58%), Gaps = 14/372 (3%)

Query: 4   IAVHQFA-QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +++HQF  + ITCHAW+ D   +A  PNN+EVHIYK    +W K H L++H+  ++GIDW
Sbjct: 1   MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWTKAHELKEHNGHITGIDW 60

Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           + +S+RIVT   DRN+YVW+Q+   W PTLVILR+NRAA  V+WSP ENKFAVGSGA+ +
Sbjct: 61  APKSDRIVTCGADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120

Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            +CY+E EN+WWVSK I+K   S+V S+ WHPNNV LA  S D KCRVFS +IK VD K 
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180

Query: 183 KKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
                 S   FG+ + +   S +  W  GV +S SGN LA+V H+S +  V D   S   
Sbjct: 181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNRLAWVSHDSTVS-VADASKSVQV 239

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
             +    LPL  V FVSE  V+  G DC PM+F  D+ G  TF+  LD  K S    +  
Sbjct: 240 STLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDVPKQSI---QRN 296

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
               E F  +  ++     N A+E+       H N I   V + E       +F T+G+D
Sbjct: 297 MSAMERFRNMDKRATTEDRNTALET------LHQNSIT-QVSIYEVDKQDCRKFCTTGID 349

Query: 361 GKIVTWDLESQE 372
           G +  WD ++ E
Sbjct: 350 GAMTIWDFKTLE 361

Probably functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Mus musculus (taxid: 10090)

>sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A OS=Rattus norvegicus GN=Arpc1a PE=2 SV=1

 Score =  287 bits (735), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 219/372 (58%), Gaps = 14/372 (3%)

Query: 4   IAVHQFA-QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +++HQF  + ITCHAW+ D   +A  PNN+EVHIYK    +W K H L++H+  ++GIDW
Sbjct: 1   MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWTKAHELKEHNGHITGIDW 60

Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           + +S+RIVT   DRN+YVW+Q+   W PTLVILR+NRAA  V+WSP ENKFAVGSGA+ +
Sbjct: 61  APKSDRIVTCGADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120

Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            +CY+E EN+WWVSK I+K   S+V S+ WHPNNV LA  S D KCRVFS +IK VD K 
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180

Query: 183 KKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
                 S   FG+ + +   S +  W  GV +S SG+ LA+V H+S +  V D   S   
Sbjct: 181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVS-VADASKSVQV 239

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
             +    LPL  V FVSE  V+  G DC PM+F  D+ G  TF+  LD  K S    +  
Sbjct: 240 STLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDVPKQSI---QRN 296

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
               E F  +  ++     N A+E+       H N I   V + E       +F T+G+D
Sbjct: 297 MSAMERFRNMDKRATTEDRNTALET------LHQNSIT-QVSIYEVDKQDCRKFCTTGID 349

Query: 361 GKIVTWDLESQE 372
           G +  WD ++ E
Sbjct: 350 GAMTIWDFKTLE 361

Probably functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Rattus norvegicus (taxid: 10116)

>sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=1 SV=2

 Score =  286 bits (733), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 219/372 (58%), Gaps = 14/372 (3%)

Query: 4   IAVHQFA-QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +++HQF  + ITCHAW+ D   +A  PNN+EVHIYK    +W K H L++H+  ++GIDW
Sbjct: 1   MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDW 60

Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           + +S+RIVT   DRN+YVW+Q+   W PTLVILR+NRAA  V+WSP ENKFAVGSGA+ +
Sbjct: 61  APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120

Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            +CY+E EN+WWVSK I+K   S+V S+ WHPNNV LA  S D KCRVFS +IK VD K 
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180

Query: 183 KKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
                 S   FG+ + +   S +  W  GV +S SG+ LA+V H+S +  V D   S   
Sbjct: 181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVS-VADASKSVQV 239

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
             +    LPL  V FVSE  V+  G DC PM+F  D+ G  TF+  LD  K S    +  
Sbjct: 240 STLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDIPKQS---IQRN 296

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
               E F  +  ++     N A+E+       H N I   V + E       +F T+G+D
Sbjct: 297 MSAMERFRNMDKRATTEDRNTALET------LHQNSIT-QVSIYEVDKQDCRKFCTTGID 349

Query: 361 GKIVTWDLESQE 372
           G +  WD ++ E
Sbjct: 350 GAMTIWDFKTLE 361

Probably functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Homo sapiens (taxid: 9606)

>sp|Q1JP79|ARC1A_BOVIN Actin-related protein 2/3 complex subunit 1A OS=Bos taurus GN=ARPC1A PE=2 SV=1

 Score =  286 bits (732), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/372 (43%), Positives = 219/372 (58%), Gaps = 14/372 (3%)

Query: 4   IAVHQFA-QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +++HQF  + ITCHAW+ D   +A  PNN+EVHIYK    +W K H L++H+  ++GIDW
Sbjct: 1   MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGGQWVKAHELKEHNGHITGIDW 60

Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           + +S+RIVT   DRN+YVW+Q+   W PTLVILR+NRAA  V+WSP ENKFAVGSGA+ +
Sbjct: 61  APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120

Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            +CY+E EN+WWVSK I+K   S+V S+ WHPNNV LA  S D KCRVFS +IK VD K 
Sbjct: 121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180

Query: 183 KKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
                 S   FG+ + +   S +  W  GV +S SG+ LA+V H+S +  V D   S   
Sbjct: 181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVS-VADASKSVQV 239

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
             +    LPL  V FVSE  V+  G DC PM+F  D+ G  TF+  LD  K S    +  
Sbjct: 240 STLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDIPKQSI---QRN 296

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
               E F  +  ++     N A+E+       H N I   V + E       +F T+G+D
Sbjct: 297 MSAMERFRNMDKRATTEDRNTALET------LHQNSIT-QVSIYEVDKQDCRKFCTTGID 349

Query: 361 GKIVTWDLESQE 372
           G +  WD ++ E
Sbjct: 350 GAMTIWDFKTLE 361

Probably functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Bos taurus (taxid: 9913)

>sp|Q58CQ2|ARC1B_BOVIN Actin-related protein 2/3 complex subunit 1B OS=Bos taurus GN=ARPC1B PE=1 SV=4

 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/380 (41%), Positives = 222/380 (58%), Gaps = 22/380 (5%)

Query: 4   IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW ++H L++H+  V+GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 60

Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P E KFAVGSG++ +
Sbjct: 61  APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120

Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            ICY+EQEN+WWV K I+K   S+V S+ WHPN+V LA  S D KCR+FS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query: 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                 S   FGE + +   S  W  GV +S +G+ +A+V H+S +   D      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA-T 239

Query: 243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGS 301
           +A   LPL  V F++E  ++  G DC P++F  D   G  +F   LD  K SS   + G 
Sbjct: 240 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS---QRGL 296

Query: 302 QFSEAFGKL------YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT 355
              E F  L       G +  G G D++         H N ++ I  L   G ++ ++F 
Sbjct: 297 TARERFQNLDKKASSEGSAAAGAGLDSL---------HKNSVSQISVL-SGGKAKCSQFC 346

Query: 356 TSGLDGKIVTWDLESQEDLL 375
           T+G+DG +  WD+ S E  L
Sbjct: 347 TTGMDGGMSIWDVRSLESAL 366

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Bos taurus (taxid: 9913)

>sp|P78774|ARPC1_SCHPO Actin-related protein 2/3 complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc1 PE=1 SV=3

 Score =  222 bits (566), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 193/365 (52%), Gaps = 16/365 (4%)

Query: 16  HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD 75
           HA++            N+V +Y+     W+       HD+IV+ +DW+ +SNRIVT S D
Sbjct: 17  HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76

Query: 76  RNSYVWNQE-GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW 134
           RN+YV+ +     W  TLV+LRLNRAA  V+WSP E+KFAVGSGA+ + +CY+EQEN+WW
Sbjct: 77  RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW 136

Query: 135 VSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
           VSK +++   S++ S+ WHPNNV LA    D K  V S +++ VD K +     S   F 
Sbjct: 137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN 196

Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS--PLAQ-NVAFRDLPLR 251
               +   S  W   V +SPSGN LAY GH+S +       P   P A   V    LPLR
Sbjct: 197 TVCAEYP-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLR 255

Query: 252 DVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDE-------RKTSSSGPKYGSQFS 304
            +L+ +E  ++  G++ +P++   +E+G W   + LD          T ++G     +  
Sbjct: 256 SLLWANESAIVAAGYNYSPILLQGNESG-WAHTRDLDAGTSKTSFTHTGNTGEGREEEGP 314

Query: 305 EAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGS-SRITRFTTSGLDGKI 363
            +F  L    +      + +S  +    H N I  + P   AG+   IT FT+SG DG++
Sbjct: 315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY--AGTPGNITAFTSSGTDGRV 372

Query: 364 VTWDL 368
           V W L
Sbjct: 373 VLWTL 377

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
224131380	378	predicted protein [Populus trichocarpa]	0.994	0.997	0.851	0.0
225446722	378	PREDICTED: actin-related protein 2/3 com	0.994	0.997	0.848	0.0
356567394	376	PREDICTED: actin-related protein 2/3 com	0.986	0.994	0.829	0.0
449444749	379	PREDICTED: actin-related protein 2/3 com	0.992	0.992	0.831	0.0
363808102	376	uncharacterized protein LOC100789138 [Gl	0.986	0.994	0.824	0.0
356527020	376	PREDICTED: actin-related protein 2/3 com	0.986	0.994	0.821	0.0
400177677	376	actin-related protein component 1 [Lotus	0.986	0.994	0.826	0.0
357459289	375	Actin-related protein 2/3 complex subuni	0.984	0.994	0.824	0.0
388513391	376	unknown [Lotus japonicus]	0.986	0.994	0.824	0.0
255569853	386	WD-repeat protein, putative [Ricinus com	0.941	0.924	0.818	1e-176

>gi|224131380|ref|XP_002321070.1| predicted protein [Populus trichocarpa] gi|222861843|gb|EEE99385.1| predicted protein [Populus trichocarpa]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/377 (85%), Positives = 347/377 (92%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           MAA+ VHQFAQCITCHAWS D +M+AFCPNNNEVHIY+L Q+KWEK+HVLQKHDQIV GI
Sbjct: 1   MAAVEVHQFAQCITCHAWSADRSMIAFCPNNNEVHIYRLSQDKWEKVHVLQKHDQIVCGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS RSNRIVT SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTASHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQ+NNWWVSKLIRKRHDSSVTSVAWHPNN+ LATTSTDGKCRVFSTFIKGVD 
Sbjct: 121 TVCICYYEQDNNWWVSKLIRKRHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVDT 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           ++ K G+ SD+KFGEQI+QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA
Sbjct: 181 RDSKAGSVSDSKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE GIW+FI+FL ERK++ SG +Y 
Sbjct: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADERGIWSFIRFLGERKSTLSGSRYS 300

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           SQFSEAFGK YGQSKYG  ND +E SR+RGG H NCI+CI+ L E+GSSR TRF+TSGLD
Sbjct: 301 SQFSEAFGKFYGQSKYGASNDGIEPSRSRGGIHENCISCIMSLTESGSSRKTRFSTSGLD 360

Query: 361 GKIVTWDLESQEDLLNY 377
           GK+V WDLE+QEDL  Y
Sbjct: 361 GKVVVWDLENQEDLSGY 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446722|ref|XP_002282499.1| PREDICTED: actin-related protein 2/3 complex subunit 1 [Vitis vinifera] gi|302143485|emb|CBI22046.3| unnamed protein product [Vitis vinifera]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/377 (84%), Positives = 350/377 (92%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           MAAI+VHQFA+CITCHAWSPDH+MVA CPN++EVHIY+  Q+KWE++HVLQKHDQIVSGI
Sbjct: 1   MAAISVHQFAKCITCHAWSPDHSMVALCPNSDEVHIYRKSQDKWERVHVLQKHDQIVSGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS RSNRIVTVSHDRNSYVWNQE +EWVPTLVILRLNRAALCVQWSP+ENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTVSHDRNSYVWNQEAAEWVPTLVILRLNRAALCVQWSPRENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQENNWWVSKLIRKRH+SSVT VAWHPNN+ LATTSTDGKCRVFSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHNSSVTGVAWHPNNILLATTSTDGKCRVFSTFIKGVDT 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           ++ + G+SSD KFGEQI+QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA
Sbjct: 181 RDSRTGSSSDAKFGEQIVQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           QNVAFRDLPLRDVLFVSE+MVIGVGFDC+PMVFAAD +GIW+FI+FL ERKTSSS  +YG
Sbjct: 241 QNVAFRDLPLRDVLFVSERMVIGVGFDCSPMVFAADGSGIWSFIRFLGERKTSSSSARYG 300

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           SQFSEAFGKLYGQSK GVGNDA+E SRTRGG H NCIN I PL E G S++TRF+TSGLD
Sbjct: 301 SQFSEAFGKLYGQSKQGVGNDAIEPSRTRGGIHENCINAIAPLTEDGDSKVTRFSTSGLD 360

Query: 361 GKIVTWDLESQEDLLNY 377
           GKIV WDL++QEDL  Y
Sbjct: 361 GKIVIWDLKNQEDLSVY 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567394|ref|XP_003551905.1| PREDICTED: actin-related protein 2/3 complex subunit 1-like [Glycine max]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/375 (82%), Positives = 344/375 (91%), Gaps = 1/375 (0%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           MA +AVHQFAQCITCHAWSPD +MVA CPNNNEVHIY+L+++KWEK+HVLQKHDQ++SGI
Sbjct: 1   MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKVHVLQKHDQVISGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS RSNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSTRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQENNWWVSKLIRKRHDSSVTSV+WHP+N+ LATTSTDGKCRVFST IKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPDNILLATTSTDGKCRVFSTLIKGVDA 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           K+ K+GTSSD+KFGE I+QLDLS SW FGVKWSPSGNTLAY GHNSMIYFVDDVGPSPLA
Sbjct: 181 KDSKKGTSSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYAGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           QNV FRDLPLRDVLFVSE+ VIGVGFDCNPMVFAADE GIW+F+++L ERK +SSGP+YG
Sbjct: 241 QNVVFRDLPLRDVLFVSERKVIGVGFDCNPMVFAADERGIWSFVRYLGERKAASSGPRYG 300

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           SQFSEAFGK YGQSK+GV NDAVE+SR RG  H NCINCI+PL + G + I RF+TSGLD
Sbjct: 301 SQFSEAFGKFYGQSKHGVSNDAVETSRARGTVHENCINCIMPLGDHG-TLIRRFSTSGLD 359

Query: 361 GKIVTWDLESQEDLL 375
           G+IV WDLE+++DLL
Sbjct: 360 GRIVVWDLENEQDLL 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444749|ref|XP_004140136.1| PREDICTED: actin-related protein 2/3 complex subunit 1-like [Cucumis sativus] gi|449481091|ref|XP_004156079.1| PREDICTED: actin-related protein 2/3 complex subunit 1-like [Cucumis sativus]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/379 (83%), Positives = 344/379 (90%), Gaps = 3/379 (0%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           M AIAVHQFA CITCHAWSPDH+MVAFCPNNNEVHIYK +Q+ WE++HVLQKHDQ++SGI
Sbjct: 1   MTAIAVHQFAHCITCHAWSPDHSMVAFCPNNNEVHIYKSLQDNWERVHVLQKHDQLISGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWSVRSNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSVRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQENNWWVSKLIRKRHDSSVT+VAWHPNN+ LATTSTDGKCR+FSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTNVAWHPNNLLLATTSTDGKCRIFSTFIKGVDT 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           K+ K GT SD+KFGE I+QLDLSFSWAFGVKWS SGNTLAY GHNSMIYFVD+VGPSPLA
Sbjct: 181 KDSKAGTFSDSKFGELIVQLDLSFSWAFGVKWSASGNTLAYAGHNSMIYFVDEVGPSPLA 240

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           Q+VAFRDLPLRD+LFVSE+MVIGVGFDC+PM FAADE GIW+F++FL E+KT +SG KYG
Sbjct: 241 QSVAFRDLPLRDILFVSERMVIGVGFDCHPMAFAADERGIWSFVRFLGEKKT-ASGSKYG 299

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAG--SSRITRFTTSG 358
           SQFSEAFGKLYGQ + GVGND+VESSR RG  H NCINCIVPL+E G   S I RF+TSG
Sbjct: 300 SQFSEAFGKLYGQPRQGVGNDSVESSRLRGCVHENCINCIVPLKEPGGRGSTIKRFSTSG 359

Query: 359 LDGKIVTWDLESQEDLLNY 377
           LDGK+V WDLE Q+DL  Y
Sbjct: 360 LDGKVVIWDLEGQDDLSQY 378

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808102|ref|NP_001242474.1| uncharacterized protein LOC100789138 [Glycine max] gi|255636878|gb|ACU18772.1| unknown [Glycine max]

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/375 (82%), Positives = 343/375 (91%), Gaps = 1/375 (0%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           MA +AVHQFAQCITCHAWSPD +MVA CPNNNEVHIY+L+++KWEKL+VLQKHDQ++SGI
Sbjct: 1   MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKLYVLQKHDQVISGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS RSNRIVT SHDRNSYVWN EGSEWVPTLVILR NRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTASHDRNSYVWNLEGSEWVPTLVILRPNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQENNWWVSKLIRKRHDSSVTSV+WHP+N+ LATTSTDGKCRVFSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPDNILLATTSTDGKCRVFSTFIKGVDA 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           ++ K+GTS D+KFGEQI+QLDLS SW FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA
Sbjct: 181 RDSKKGTSPDSKFGEQIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           QNV FRDLPLRDVLFVSE+ VIGVGFDCNPMVFAADE GIW+F+++L ERK  SSG +YG
Sbjct: 241 QNVVFRDLPLRDVLFVSERKVIGVGFDCNPMVFAADERGIWSFVRYLAERKAVSSGSRYG 300

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           SQFSEAFGK YGQSK+GV ND VE+SRTRG  H NCINCI+PL + G + + RF+TSGLD
Sbjct: 301 SQFSEAFGKFYGQSKHGVSNDTVETSRTRGTVHENCINCIMPLGDHG-TLLRRFSTSGLD 359

Query: 361 GKIVTWDLESQEDLL 375
           G+IV WDLE+++DLL
Sbjct: 360 GRIVVWDLENEQDLL 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527020|ref|XP_003532112.1| PREDICTED: actin-related protein 2/3 complex subunit 1-like [Glycine max]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/375 (82%), Positives = 343/375 (91%), Gaps = 1/375 (0%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           MA +AVHQFAQCITCHAWSPD +MVA CPNNNEVHIY+L+++KWEK++VLQKHDQ++SGI
Sbjct: 1   MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKVYVLQKHDQVISGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS RSNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCV+WSPKENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVEWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQENNWWVSKLIRKRHDSSVTSV+WHP+N+ LATTSTDGKCRVFSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPDNILLATTSTDGKCRVFSTFIKGVDA 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           K+ K+GTSSD+KFGE I+QLDLS SW FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA
Sbjct: 181 KDSKKGTSSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           QNV FRDLPL DVLF SE+ VIGVGFDCNPMVFAADE GIW+F+++L ERK  SSG +YG
Sbjct: 241 QNVVFRDLPLHDVLFASERNVIGVGFDCNPMVFAADERGIWSFVRYLGERKAVSSGSRYG 300

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           SQFSEAFGK YGQSK+GV NDAVE+SRTRG  H NCINCI+PL + G + + RF+TSGLD
Sbjct: 301 SQFSEAFGKFYGQSKHGVSNDAVETSRTRGTVHENCINCIMPLGDHG-TLVRRFSTSGLD 359

Query: 361 GKIVTWDLESQEDLL 375
           G+IV WDLE+++DLL
Sbjct: 360 GRIVVWDLENEQDLL 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400177677|gb|AFP72374.1| actin-related protein component 1 [Lotus japonicus]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/375 (82%), Positives = 341/375 (90%), Gaps = 1/375 (0%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           MA +AVHQFAQCITCHAWSPD +MVA CPNNNEVHIY+L+++KWEK+HVLQKHDQ+VSGI
Sbjct: 1   MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKVHVLQKHDQVVSGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS RSNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSTRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQENNWWVSKLIRKRHDSSVTSV+WHPNN+ LATTSTDGKCRVFSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPNNILLATTSTDGKCRVFSTFIKGVDA 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           K+  +GT SD+KFGE I+QLDLS SW FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA
Sbjct: 181 KDSIKGTLSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           QNV FRDLPLRDVLFVSE+ VIGVGFDCNPMVFAADE GIW+FI++L ERKT+SS  +YG
Sbjct: 241 QNVVFRDLPLRDVLFVSERTVIGVGFDCNPMVFAADERGIWSFIRYLGERKTASSPSRYG 300

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           SQFSEAFGK YGQSK+GV ND V++SRTRG  H NCIN I+PL E G +   RF+TSGLD
Sbjct: 301 SQFSEAFGKFYGQSKHGVSNDTVDTSRTRGAVHENCINSIIPLGEHG-ALTRRFSTSGLD 359

Query: 361 GKIVTWDLESQEDLL 375
           G+IV WDLE+++D+L
Sbjct: 360 GRIVLWDLENEQDIL 374

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459289|ref|XP_003599925.1| Actin-related protein 2/3 complex subunit [Medicago truncatula] gi|355488973|gb|AES70176.1| Actin-related protein 2/3 complex subunit [Medicago truncatula]

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/375 (82%), Positives = 341/375 (90%), Gaps = 2/375 (0%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           MA ++VHQFAQCITCHAWSPD +MVAFCPNNNEVHIY+L+++KWEK+HVLQKHDQ++SGI
Sbjct: 1   MAVMSVHQFAQCITCHAWSPDQSMVAFCPNNNEVHIYRLVEDKWEKVHVLQKHDQVISGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS RSNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSARSNRIVTSSHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQENNWWVSKLIRKRHDSSVTSV+WHP+N+ LATTSTDGKCRVFSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPDNILLATTSTDGKCRVFSTFIKGVDA 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           K+ K+ T SD KFGE I+QLDLS SW FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA
Sbjct: 181 KDSKKST-SDMKFGELIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 239

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           QNV FRDLPLRDVLFVSE+ VIGVG+DCNPMVFAADE G+W F+++L ERKT SSG +YG
Sbjct: 240 QNVVFRDLPLRDVLFVSERTVIGVGYDCNPMVFAADERGVWGFVRYLGERKTVSSGSRYG 299

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           SQFSEAFGK YGQSKYGVGNDAVE+S+TRG  H NCIN I+PL E G +   RF+TSGLD
Sbjct: 300 SQFSEAFGKFYGQSKYGVGNDAVETSKTRGAVHDNCINSIIPLGEHG-TLTRRFSTSGLD 358

Query: 361 GKIVTWDLESQEDLL 375
           G+I  WDLE+++DLL
Sbjct: 359 GRIAVWDLENEQDLL 373

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513391|gb|AFK44757.1| unknown [Lotus japonicus]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/375 (82%), Positives = 339/375 (90%), Gaps = 1/375 (0%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           MA +AVHQFAQCITCHAWSPD +MVA CPNNNEVHIY+L+++KWEK+HVLQKHDQ+VSGI
Sbjct: 1   MAVMAVHQFAQCITCHAWSPDQSMVALCPNNNEVHIYRLVEDKWEKVHVLQKHDQVVSGI 60

Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
           DWS RSNRIVT SHDRNSYVWN EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK
Sbjct: 61  DWSTRSNRIVTASHDRNSYVWNLEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120

Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           TVCICYYEQENNWWVSKLIRKRHDSSVTSV+WHPNN+ LATTSTDGKCRVFSTFIKGVD 
Sbjct: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVSWHPNNILLATTSTDGKCRVFSTFIKGVDA 180

Query: 181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
           K+  +GT SD+KFGE I+QLDLS SW FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA
Sbjct: 181 KDSVKGTLSDSKFGELIVQLDLSSSWTFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240

Query: 241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
           QNV F DLPLRDVLFVSE+ VIGVGFDCNPMVFAADE GIW+FI++L ERKT+SS  +YG
Sbjct: 241 QNVVFCDLPLRDVLFVSERTVIGVGFDCNPMVFAADERGIWSFIRYLGERKTASSPSRYG 300

Query: 301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
           SQFSEAFGK YGQSK+GV ND V++SRTRG  H NCIN I+PL E G +   RF+TSGLD
Sbjct: 301 SQFSEAFGKFYGQSKHGVSNDTVDTSRTRGAVHENCINSIIPLGEHG-ALTRRFSTSGLD 359

Query: 361 GKIVTWDLESQEDLL 375
           G+IV WDLE++ D+L
Sbjct: 360 GRIVLWDLENEHDIL 374

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569853|ref|XP_002525890.1| WD-repeat protein, putative [Ricinus communis] gi|223534804|gb|EEF36494.1| WD-repeat protein, putative [Ricinus communis]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 293/358 (81%), Positives = 320/358 (89%), Gaps = 1/358 (0%)

Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSG 59
           MAAI+VHQFAQCITCHAWSPDH+M+A CPNNNEVHIYK   E KWE++HVLQKHDQIVSG
Sbjct: 1   MAAISVHQFAQCITCHAWSPDHSMIALCPNNNEVHIYKSSPEDKWERVHVLQKHDQIVSG 60

Query: 60  IDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119
           IDWSVR NRIVT SHDRNSYVWN+EG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct: 61  IDWSVRCNRIVTASHDRNSYVWNREGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query: 120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVD 179
           KTVCICYYEQ+NNWWVSKLIRKRHDSSVTSVAWHPNN+ LATTSTDGKCRVFSTFIKGVD
Sbjct: 121 KTVCICYYEQDNNWWVSKLIRKRHDSSVTSVAWHPNNILLATTSTDGKCRVFSTFIKGVD 180

Query: 180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239
            ++ K G+SSD+KFGEQI+QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL
Sbjct: 181 TRDSKAGSSSDSKFGEQIIQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 240

Query: 240 AQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKY 299
           AQNVA+RDLPLRDV+FVSEKMVIG GFDCNPMVF ADE GIW+FI+FL ERK+S  G KY
Sbjct: 241 AQNVAYRDLPLRDVIFVSEKMVIGGGFDCNPMVFVADERGIWSFIRFLGERKSSLPGSKY 300

Query: 300 GSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS 357
           GSQFSEAFGK YGQSK G  NDA++S+R+ GG H NCI  +      G+  + R + S
Sbjct: 301 GSQFSEAFGKFYGQSKIGGSNDAIDSTRSHGGIHDNCIKLMPDTAFVGTVAVLRLSGS 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2052871	378	ARPC1A "AT2G30910" [Arabidopsi	0.981	0.984	0.790	2.3e-165
TAIR|locus:2042491	378	ARPC1B "AT2G31300" [Arabidopsi	0.984	0.986	0.788	1e-164
DICTYBASE|DDB_G0277825	369	arcA "actin related protein 2/	0.952	0.978	0.440	6.2e-85
MGI|MGI:1343142	372	Arpc1b "actin related protein	0.960	0.978	0.425	2.4e-76
RGD|2155	372	Arpc1b "actin related protein	0.960	0.978	0.419	1e-75
UNIPROTKB|O88656	372	Arpc1b "Actin-related protein	0.960	0.978	0.419	1e-75
ZFIN|ZDB-GENE-030131-7414	369	arpc1b "actin related protein	0.949	0.975	0.416	1.3e-75
UNIPROTKB|E2RMT4	372	ARPC1B "Uncharacterized protei	0.960	0.978	0.427	1.7e-75
UNIPROTKB|O15143	372	ARPC1B "Actin-related protein	0.960	0.978	0.419	2.1e-75
MGI|MGI:1928896	370	Arpc1a "actin related protein	0.944	0.967	0.438	2.1e-75

TAIR|locus:2052871 ARPC1A "AT2G30910" [Arabidopsis thaliana (taxid:3702)]

 Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
 Identities = 298/377 (79%), Positives = 332/377 (88%)

Query:     1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYK-LIQEKWEKLHVLQKHDQIVSG 59
             MA + VH+FA+ ITCHAWSPD +MVA CPNN EVHIYK L Q+ WE+LHVLQKHDQIVSG
Sbjct:     1 MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query:    60 IDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119
             IDWS +SN+IVTVSHDRNSYVW+ EG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct:    61 IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query:   120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVD 179
             KTVCICYYEQENNWWVSKLIRKRH+SSVTSVAWHPNNV LATTSTDGKCRVFSTFIKGVD
Sbjct:   121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query:   180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239
              K+ K G+ ++TKFGEQILQLDLS+SWAFGVKWSPSGNTLAYVGH+SMIYFVDDVGPSPL
Sbjct:   181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query:   240 AQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKY 299
             AQ+VAFRDLPLRDVLF+SEKMVIGVG+D NPMVFA+D+TGIW+FI+++ E+K +SS   Y
Sbjct:   241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFASDDTGIWSFIRYIGEKKAASSNSSY 300

Query:   300 GSQFSEAFGKLYG-QSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG 358
              SQFSEAFGK YG QSK    NDA ES   RGG H NCIN IV L +AGS ++ RF+TSG
Sbjct:   301 SSQFSEAFGKFYGSQSKSTTANDASES---RGGVHDNCINSIVSLSKAGSPKVMRFSTSG 357

Query:   359 LDGKIVTWDLESQEDLL 375
             LDGK+  WDLE+ E  L
Sbjct:   358 LDGKVAIWDLENMEQEL 374

GO:0000166 "nucleotide binding" evidence=ISS

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0007015 "actin filament organization" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

TAIR|locus:2042491 ARPC1B "AT2G31300" [Arabidopsis thaliana (taxid:3702)]

 Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
 Identities = 299/379 (78%), Positives = 334/379 (88%)

Query:     1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYK-LIQEKWEKLHVLQKHDQIVSG 59
             MA + VH+FA+ ITCHAWSPD +MVA CPNN EVHIYK L Q+ WE+LHVLQKHDQIVSG
Sbjct:     1 MAVVDVHRFAESITCHAWSPDLSMVALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSG 60

Query:    60 IDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 119
             IDWS +SN+IVTVSHDRNSYVW+ EG+EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA
Sbjct:    61 IDWSSKSNKIVTVSHDRNSYVWSLEGAEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA 120

Query:   120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVD 179
             KTVCICYYEQENNWWVSKLIRKRH+SSVTSVAWHPNNV LATTSTDGKCRVFSTFIKGVD
Sbjct:   121 KTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVD 180

Query:   180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL 239
              K+ K G+ ++TKFGEQILQLDLS+SWAFGVKWSPSGNTLAYVGH+SMIYFVDDVGPSPL
Sbjct:   181 TKDSKAGSPAETKFGEQILQLDLSYSWAFGVKWSPSGNTLAYVGHSSMIYFVDDVGPSPL 240

Query:   240 AQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKY 299
             AQ+VAFRDLPLRDVLF+SEKMVIGVG+D NPMVFAAD+TGIW+FI+++ E+K +SSG  Y
Sbjct:   241 AQSVAFRDLPLRDVLFISEKMVIGVGYDSNPMVFAADDTGIWSFIRYIGEKKAASSGSSY 300

Query:   300 GSQFSEAFGKLYG-QSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG 358
              SQFSEAFGK YG QSK    NDA +S   RGG H N I  IVPL + GS ++ RF+TSG
Sbjct:   301 SSQFSEAFGKFYGSQSKSTTANDASDS---RGGVHDNSITSIVPLGKGGSPKVMRFSTSG 357

Query:   359 LDGKIVTWDLES-QEDLLN 376
             LDGKI  WDLE+ Q++L N
Sbjct:   358 LDGKIAIWDLENMQQELGN 376

GO:0000166 "nucleotide binding" evidence=ISS

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0007015 "actin filament organization" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

DICTYBASE|DDB_G0277825 arcA "actin related protein 2/3 complex, subunit 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 164/372 (44%), Positives = 233/372 (62%)

Query:     1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
             M+A  +   A CIT HAW+ D + VA CPNNNEVHIY      W   HVL +HDQ+V+ I
Sbjct:     1 MSAFEIEHLASCITAHAWNADRSRVALCPNNNEVHIYAKQGTSWVVEHVLAEHDQLVTSI 60

Query:    61 DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
             DW+ ++NRI+T S DRN+YVW  +  +W P LV+LR+NRAA  V+WSP+ENKFAV +GAK
Sbjct:    61 DWAPKTNRILTSSQDRNAYVWTFKDGQWKPVLVLLRINRAATHVKWSPQENKFAVATGAK 120

Query:   121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
              VCIC++E+E++WW S  I+K H S+V  V WHPNN+ LAT+S+D K RVF  +IK  D 
Sbjct:   121 LVCICFFEEEHDWWASNHIKK-HKSTVLKVDWHPNNLLLATSSSDYKVRVFDAYIKKADG 179

Query:   181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
             +        +  FGE + + D   SW   +KWSPSG+TLAY  H+ +    +     P  
Sbjct:   180 RSVTR-PYGEVAFGEPVFEFDQCASWVHALKWSPSGSTLAYSSHDGVFAVANFSTNPPTI 238

Query:   241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
             + +  R+LPLRD+L+++E  + GVG+DC P++   ++ G W +   +D  K S  G   G
Sbjct:   239 EKLRVRNLPLRDLLYITENSIAGVGYDCAPLLIT-NQNG-WKYSGEMD--KASEGGAAAG 294

Query:   301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
             S+ S    KL+ Q+K  +G ++  + +     H NCI  IVP +  G   ++ F+TSGLD
Sbjct:   295 SETSAR--KLF-QNKVDLG-ESKSADKKLTTVHQNCITSIVPFKSVGGV-VSDFSTSGLD 349

Query:   361 GKIVTWDLESQE 372
             G IV W +++ E
Sbjct:   350 GNIVVWHVKALE 361

GO:0030670 "phagocytic vesicle membrane" evidence=IDA

GO:0006909 "phagocytosis" evidence=IEP

GO:0006887 "exocytosis" evidence=IEP

GO:0005885 "Arp2/3 protein complex" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IC

GO:0030175 "filopodium" evidence=IC

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0051015 "actin filament binding" evidence=TAS

GO:0045010 "actin nucleation" evidence=TAS

GO:0030041 "actin filament polymerization" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0031252 "cell leading edge" evidence=IC

GO:0031143 "pseudopodium" evidence=IEA;IC

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005905 "coated pit" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1343142 Arpc1b "actin related protein 2/3 complex, subunit 1B" [Mus musculus (taxid:10090)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 159/374 (42%), Positives = 220/374 (58%)

Query:     4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
             +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW K+H L++H+  V+GIDW
Sbjct:     1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query:    63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
             +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct:    61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query:   123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
              ICY+EQEN+WWV K I+K   S+V S+ WHPNNV LA  S D KCR+FS +IK V+ + 
Sbjct:   121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query:   183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                   S   FGE + +   S  W  GV +S SG+ +A+V H+S +  VD      +A  
Sbjct:   181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLVDADKKMAVA-T 239

Query:   243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW-TFIKFLDERKTSSSGPKYGS 301
             +A   LPL  V F++E  ++  G DC P++F  D   +  +F   LD  K SS   + G 
Sbjct:   240 LASETLPLLAVTFITENSLVAAGHDCFPVLFTYDNAAVTLSFGGRLDVPKQSS---QRGM 296

Query:   302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361
                E F  L    K         +       H N ++ I  L   G ++ ++F T+G+DG
Sbjct:   297 TARERFQNL---DKKASSEGGAATGAGLDSLHKNSVSQISVL-SGGKAKCSQFCTTGMDG 352

Query:   362 KIVTWDLESQEDLL 375
              +  WD++S E  L
Sbjct:   353 GMSIWDVKSLESAL 366

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

RGD|2155 Arpc1b "actin related protein 2/3 complex, subunit 1B" [Rattus norvegicus (taxid:10116)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 157/374 (41%), Positives = 219/374 (58%)

Query:     4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
             +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW K+H L++H+  V+GIDW
Sbjct:     1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query:    63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
             +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct:    61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query:   123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
              ICY+EQEN+WWV K I+K   S+V S+ WHPNNV LA  S D KCR+FS +IK V+ + 
Sbjct:   121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query:   183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                   S   FGE + +   S  W  GV +S  G+ +A+V H+S +  VD      +A  
Sbjct:   181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVA-T 239

Query:   243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGS 301
             +A   LPL  + F++E  ++  G DC P++F  D   G  +F   LD  K +S   + G 
Sbjct:   240 LASETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGTLSFGGRLDVPKQNS---QRGL 296

Query:   302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361
                E F  L    K         +       H N ++ I  L   G ++ ++F T+G+DG
Sbjct:   297 TARERFQNL---DKKASSEGGAATGAGLDSLHKNSVSQISVL-SGGKAKCSQFCTTGMDG 352

Query:   362 KIVTWDLESQEDLL 375
              +  WD++S E  L
Sbjct:   353 GMSIWDVKSLESAL 366

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|O88656 Arpc1b "Actin-related protein 2/3 complex subunit 1B" [Rattus norvegicus (taxid:10116)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 157/374 (41%), Positives = 219/374 (58%)

Query:     4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
             +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW K+H L++H+  V+GIDW
Sbjct:     1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWNKVHELKEHNGQVTGIDW 60

Query:    63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
             +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct:    61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query:   123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
              ICY+EQEN+WWV K I+K   S+V S+ WHPNNV LA  S D KCR+FS +IK V+ + 
Sbjct:   121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query:   183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                   S   FGE + +   S  W  GV +S  G+ +A+V H+S +  VD      +A  
Sbjct:   181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSAGGSRVAWVSHDSTVCLVDAEKKMAVA-T 239

Query:   243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGS 301
             +A   LPL  + F++E  ++  G DC P++F  D   G  +F   LD  K +S   + G 
Sbjct:   240 LASETLPLLAITFITENSLVAAGHDCFPVLFTYDNAAGTLSFGGRLDVPKQNS---QRGL 296

Query:   302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361
                E F  L    K         +       H N ++ I  L   G ++ ++F T+G+DG
Sbjct:   297 TARERFQNL---DKKASSEGGAATGAGLDSLHKNSVSQISVL-SGGKAKCSQFCTTGMDG 352

Query:   362 KIVTWDLESQEDLL 375
              +  WD++S E  L
Sbjct:   353 GMSIWDVKSLESAL 366

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

ZFIN|ZDB-GENE-030131-7414 arpc1b "actin related protein 2/3 complex, subunit 1B" [Danio rerio (taxid:7955)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 156/375 (41%), Positives = 223/375 (59%)

Query:     4 IAVHQFA-QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
             +A H F  + I+CHAW+ D   +A CPNN+EVHIY      W K+HVL++H+  V+GIDW
Sbjct:     1 MAYHSFLLEPISCHAWNKDRTQIALCPNNHEVHIYNKAGNNWNKIHVLKEHNGQVTGIDW 60

Query:    63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
             +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+WSPKENKFAVGSG++ +
Sbjct:    61 APESNRIVTCGTDRNAYVWTLKGDAWKPTLVILRINRAARCVKWSPKENKFAVGSGSRLI 120

Query:   123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
              +CY+EQ+N+WWV K I+K   S++  + WHPNNV LA  S D KCR+FS +IK V+ K 
Sbjct:   121 SVCYFEQDNDWWVCKHIKKPIRSTILCLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEEKP 180

Query:   183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                   S   FGE + +   +  W  GV +S SGN +A+  H+S +  V + G + +  +
Sbjct:   181 APTAWGSKMPFGEVMFESTGTSGWVHGVCFSDSGNRVAWASHDSTVA-VAEGGKTAVCTS 239

Query:   243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGI-WTFIKFLDERKTSSS-GPKYG 300
             +    LPL  V F++E  ++  G DC P++F  D      +F   LD  K S+  G    
Sbjct:   240 LTSETLPLLCVTFITENSLVAAGHDCYPVLFVYDSNNAALSFGGKLDVPKQSAQKGMTAR 299

Query:   301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
              +F     K   +SK  V    +ES       H N I+ I  L + G ++ ++F T+G+D
Sbjct:   300 ERFQNLDKKATTESKEAV----LES------LHKNSISQI-SLLDGGKAKCSKFCTTGMD 348

Query:   361 GKIVTWDLESQEDLL 375
             G +  WD+++ E  +
Sbjct:   349 GGMTIWDVKTLESAM 363

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|E2RMT4 ARPC1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 160/374 (42%), Positives = 220/374 (58%)

Query:     4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
             +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW K+H L++H+  V+GIDW
Sbjct:     1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWVKVHELKEHNGQVTGIDW 60

Query:    63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
             +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct:    61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPHENKFAVGSGSRVI 120

Query:   123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
              ICY+EQEN+WWV K I+K   S+V S+ WHPNNV LA  S D KCR+FS +IK V+ + 
Sbjct:   121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query:   183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                   S   FGE + +   S  W  GV +S SG+ +A+V H+S +   D      +A  
Sbjct:   181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTMCLADADKKMAVA-T 239

Query:   243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGS 301
             +A   LPL  + F++E  ++  G DC P++F  D T G  +    LD  K SS   + G 
Sbjct:   240 LASETLPLLALTFITENSLVAAGHDCFPVLFTYDSTTGTLSSGGRLDVPKQSS---QRGL 296

Query:   302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361
                E F  L    K      +V S       H N ++ I  L   G +  ++F T+G+DG
Sbjct:   297 TARERFQNL---DKKASSEGSVASGSGLDSLHKNSVSQISVL-SGGKAECSQFCTTGMDG 352

Query:   362 KIVTWDLESQEDLL 375
              +  WD++S E  L
Sbjct:   353 GMSIWDVKSLESAL 366

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|O15143 ARPC1B "Actin-related protein 2/3 complex subunit 1B" [Homo sapiens (taxid:9606)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 157/374 (41%), Positives = 220/374 (58%)

Query:     4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
             +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW K+H L++H+  V+GIDW
Sbjct:     1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW 60

Query:    63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
             +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P ENKFAVGSG++ +
Sbjct:    61 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI 120

Query:   123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
              ICY+EQEN+WWV K I+K   S+V S+ WHPNNV LA  S D KCR+FS +IK V+ + 
Sbjct:   121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP 180

Query:   183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                   S   FGE + +   S  W  GV +S SG+ +A+V H+S +   D      +A  
Sbjct:   181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA-T 239

Query:   243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGS 301
             +A   LPL  + F+++  ++  G DC P++F  D   G+ +F   LD  K SS   + G 
Sbjct:   240 LASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSS---QRGL 296

Query:   302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG 361
                E F  L    K         +       H N ++ I  L   G ++ ++F T+G+DG
Sbjct:   297 TARERFQNL---DKKASSEGGTAAGAGLDSLHKNSVSQISVL-SGGKAKCSQFCTTGMDG 352

Query:   362 KIVTWDLESQEDLL 375
              +  WD++S E  L
Sbjct:   353 GMSIWDVKSLESAL 366

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

MGI|MGI:1928896 Arpc1a "actin related protein 2/3 complex, subunit 1A" [Mus musculus (taxid:10090)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 163/372 (43%), Positives = 219/372 (58%)

Query:     4 IAVHQFA-QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
             +++HQF  + ITCHAW+ D   +A  PNN+EVHIYK    +W K H L++H+  ++GIDW
Sbjct:     1 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWTKAHELKEHNGHITGIDW 60

Query:    63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
             + +S+RIVT   DRN+YVW+Q+   W PTLVILR+NRAA  V+WSP ENKFAVGSGA+ +
Sbjct:    61 APKSDRIVTCGADRNAYVWSQKDGIWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI 120

Query:   123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
              +CY+E EN+WWVSK I+K   S+V S+ WHPNNV LA  S D KCRVFS +IK VD K 
Sbjct:   121 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP 180

Query:   183 KKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
                   S   FG+ + +   S +  W  GV +S SGN LA+V H+S +  V D   S   
Sbjct:   181 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGNRLAWVSHDSTVS-VADASKSVQV 239

Query:   241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG 300
               +    LPL  V FVSE  V+  G DC PM+F  D+ G  TF+  LD  K S    +  
Sbjct:   240 STLRTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDVPKQSI---QRN 296

Query:   301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD 360
                 E F  +  ++     N A+E+       H N I   V + E       +F T+G+D
Sbjct:   297 MSAMERFRNMDKRATTEDRNTALET------LHQNSITQ-VSIYEVDKQDCRKFCTTGID 349

Query:   361 GKIVTWDLESQE 372
             G +  WD ++ E
Sbjct:   350 GAMTIWDFKTLE 361

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0008150 "biological_process" evidence=ND

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WV32	ARC1B_MOUSE	No assigned EC number	0.4263	0.9445	0.9623	yes	no
P38328	ARPC1_YEAST	No assigned EC number	0.3412	0.9525	0.9401	yes	no
O15143	ARC1B_HUMAN	No assigned EC number	0.4210	0.9445	0.9623	yes	no
P78774	ARPC1_SCHPO	No assigned EC number	0.3589	0.9208	0.9257	yes	no
O88656	ARC1B_RAT	No assigned EC number	0.4210	0.9445	0.9623	yes	no
O96622	ARPC1_DICDI	No assigned EC number	0.4408	0.9525	0.9783	yes	no
Q1JP79	ARC1A_BOVIN	No assigned EC number	0.4354	0.9445	0.9675	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIV0815	hypothetical protein (379 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_880004	hypothetical protein (169 aa)				•	•	•	•		0.914
	eugene3.00181096	hypothetical protein (174 aa)					•	•	•		0.675
	grail3.0152006101	hypothetical protein (174 aa)					•	•	•		0.667
	estExt_fgenesh4_pm.C_LG_V0447	hypothetical protein (258 aa)				•	•		•		0.595
	estExt_Genewise1_v1.C_LG_III0618	SubName- Full=Putative uncharacterized protein; (324 aa)					•	•	•		0.584
	grail3.0008021701	hypothetical protein (324 aa)					•	•	•		0.562
	gw1.XIV.452.1	hypothetical protein (81 aa)							•		0.476
	fgenesh4_pm.C_LG_VIII000778	hypothetical protein (428 aa)					•		•		0.400
	fgenesh4_pm.C_LG_X000204	hypothetical protein (428 aa)					•		•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	8e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.0 bits (190), Expect = 7e-16
 Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 26/216 (12%)

Query: 13  ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV 72
           ++  A+SPD  +++    +  + ++ +   K   L  L+ H   V+ + +S     + + 
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFVASS 153

Query: 73  SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN 132
           S D    +W+           +         V +SP   K    S   T+ +  ++    
Sbjct: 154 SQDGTIKLWD--LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL--WDLSTG 209

Query: 133 WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTK 192
             +  L    H++ V SVA+ P+   LA+ S DG  RV+                  D +
Sbjct: 210 KCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGTIRVW------------------DLR 249

Query: 193 FGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228
            GE +  L    +    + WSP G  LA    +  I
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 13  ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV 72
           +   A+SPD   VA    +  + ++ L     + +  L  H   V+ + +S    ++++ 
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195

Query: 73  SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN 132
           S D    +W+    + + TL           V +SP     A GS   T+ +        
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLR--GHENGVNSVAFSPDGYLLASGSEDGTIRV-------- 245

Query: 133 W-WVSKLIRKR---HDSSVTSVAWHPNNVFLATTSTDGKCRVFS 172
           W   +    +    H +SVTS+AW P+   LA+ S DG  R++ 
Sbjct: 246 WDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 45/199 (22%), Positives = 70/199 (35%), Gaps = 32/199 (16%)

Query: 47  LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQW 106
              L+ H   V+ + +S     + T S D    VW+ E  E + TL           V  
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG--PVRDVAA 59

Query: 107 SPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR----HDSSVTSVAWHPNNVFLATT 162
           S      A GS  KT+ +        W +      R    H S V+SVA+ P+   L+++
Sbjct: 60  SADGTYLASGSSDKTIRL--------WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111

Query: 163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV 222
           S D   +V+                  D + G+ +  L     W   V +SP G  +A  
Sbjct: 112 SRDKTIKVW------------------DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153

Query: 223 GHNSMIYFVDDVGPSPLAQ 241
             +  I   D      +A 
Sbjct: 154 SQDGTIKLWDLRTGKCVAT 172

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 66.7 bits (161), Expect = 5e-12
 Identities = 69/366 (18%), Positives = 124/366 (33%), Gaps = 36/366 (9%)

Query: 13  ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-- 70
           IT  A+SPD  ++    ++  + ++ L   +     +   HD  VS +  S      +  
Sbjct: 68  ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILL 127

Query: 71  -TVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ 129
            + S D    +W+           +   + +   + +SP     A GS      I  ++ 
Sbjct: 128 ASSSLDGTVKLWDLSTP-GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT-IKLWDL 185

Query: 130 ENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTS 188
                +S L    H   V+S+A+ P+  + +A+ S+DG  R++                 
Sbjct: 186 RTGKPLSTL--AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW----------------- 226

Query: 189 SDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL 248
            D   G+ +       S +    +SP G+ LA    +  I   D    S L + ++    
Sbjct: 227 -DLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 249 PLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFG 308
            +  V F  +  ++  G     +     ETG                GP     FS    
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL----TLKGHEGPVSSLSFSPDGS 341

Query: 309 KLYGQSKYGVGNDA-VESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTW 366
            L      G  +D  +     R G  +  +     +     S   R  +SG  DG +  W
Sbjct: 342 LLV----SGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLW 397

Query: 367 DLESQE 372
           DL +  
Sbjct: 398 DLSTGS 403

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 3e-10
 Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 8/188 (4%)

Query: 11  QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV 70
             +   A+SPD  ++A   ++  V ++ L   K      L+ H+  VS + +S   + +V
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 71  T-VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ 129
           +  S D    +W+         L  L  +   L V +SP     + GS   TV +     
Sbjct: 345 SGGSDDGTIRLWD---LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Query: 130 ENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS 189
            +           H S VTS+ + P+   LA+ S+D   R++        +    +G   
Sbjct: 402 GS----LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVL 457

Query: 190 DTKFGEQI 197
            +K  +  
Sbjct: 458 ASKSSDLS 465

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 50/225 (22%), Positives = 85/225 (37%), Gaps = 36/225 (16%)

Query: 13  ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV 72
           +TC A+SPD  ++A    +  + ++ L  E  E L  L+ H   V  +  S     + + 
Sbjct: 12  VTCVAFSPDGKLLATGSGDGTIKVWDL--ETGELLRTLKGHTGPVRDVAASADGTYLASG 69

Query: 73  SHDRNSYVWNQEGSEWVPTLVILRLNRAA-LCVQWSPKENKFAVGSGAKTVCICYYEQEN 131
           S D+   +W+ E  E    +  L  + +    V +SP     +  S  KT+ +       
Sbjct: 70  SSDKTIRLWDLETGE---CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV------- 119

Query: 132 NWWVSKLIRKR----HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGT 187
            W V           H   V SVA+ P+  F+A++S DG  +++                
Sbjct: 120 -WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW---------------- 162

Query: 188 SSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD 232
             D + G+ +  L         V +SP G  L     +  I   D
Sbjct: 163 --DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 46/221 (20%), Positives = 77/221 (34%), Gaps = 40/221 (18%)

Query: 17  AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR 76
           A S D   +A   ++  + ++ L  E  E +  L  H   VS + +S     + + S D+
Sbjct: 58  AASADGTYLASGSSDKTIRLWDL--ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK 115

Query: 77  NSYVWNQEGSEWVPTLVILRL----NRAALCVQWSPKENKFAVGSGA-KTVCICYYEQEN 131
              VW+      V T   L            V +SP +  F   S    T+ +       
Sbjct: 116 TIKVWD------VETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTG- 167

Query: 132 NWWVSKLIR--KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS 189
                K +     H   V SVA+ P+   L ++S+DG  +++                  
Sbjct: 168 -----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW------------------ 204

Query: 190 DTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF 230
           D   G+ +  L    +    V +SP G  LA    +  I  
Sbjct: 205 DLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 143 HDSSVTSVAWHPNNVFLATTSTDGKCRVFS 172
           H   VTSVA+ P+   LA+ S DG  RV+ 
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 141 KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFS 172
           K H   VTSVA+ P+  +LA+ S DG  +++ 
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 43 KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82
            E L  L+ H   V+ + +S     + + S D    +W+
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN 82
           + L  L+ H   V+ + +S   N + + S D    VW+
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG2096	420	consensus WD40 repeat protein [General function pr	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PTZ00420	568	coronin; Provisional	99.98
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.98
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.98
PTZ00420	568	coronin; Provisional	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0639	705	consensus Transducin-like enhancer of split protei	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.95
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG4227	609	consensus WD40 repeat protein [General function pr	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1188	376	consensus WD40 repeat protein [General function pr	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.9
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG4328	498	consensus WD40 protein [Function unknown]	99.9
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG1963	792	consensus WD40 repeat protein [General function pr	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.88
PRK11028	330	6-phosphogluconolactonase; Provisional	99.88
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.88
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.86
KOG1334	559	consensus WD40 repeat protein [General function pr	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.85
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.83
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.82
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG1334	559	consensus WD40 repeat protein [General function pr	99.8
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.8
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.8
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
PRK03629	429	tolB translocation protein TolB; Provisional	99.79
KOG2139	445	consensus WD40 repeat protein [General function pr	99.78
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.78
PRK02889	427	tolB translocation protein TolB; Provisional	99.78
KOG0649	325	consensus WD40 repeat protein [General function pr	99.77
PRK04922	433	tolB translocation protein TolB; Provisional	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.77
PRK05137	435	tolB translocation protein TolB; Provisional	99.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.77
PRK05137	435	tolB translocation protein TolB; Provisional	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG2321	703	consensus WD40 repeat protein [General function pr	99.76
PRK02889	427	tolB translocation protein TolB; Provisional	99.76
PRK04922	433	tolB translocation protein TolB; Provisional	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.74
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.73
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.72
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.71
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.7
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.7
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.7
PRK00178	430	tolB translocation protein TolB; Provisional	99.69
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.68
PRK01029	428	tolB translocation protein TolB; Provisional	99.68
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.68
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.67
PRK04792	448	tolB translocation protein TolB; Provisional	99.67
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.67
PRK04792	448	tolB translocation protein TolB; Provisional	99.65
PRK00178	430	tolB translocation protein TolB; Provisional	99.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.64
PRK01029	428	tolB translocation protein TolB; Provisional	99.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.62
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.59
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.59
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
KOG4547	541	consensus WD40 repeat-containing protein [General	99.57
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.55
KOG4547	541	consensus WD40 repeat-containing protein [General	99.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.54
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.51
KOG2315	566	consensus Predicted translation initiation factor	99.5
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.5
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.49
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.49
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.48
COG4946	668	Uncharacterized protein related to the periplasmic	99.47
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.44
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.44
KOG2315	566	consensus Predicted translation initiation factor	99.43
PRK04043	419	tolB translocation protein TolB; Provisional	99.43
PRK04043	419	tolB translocation protein TolB; Provisional	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.42
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.42
COG4946	668	Uncharacterized protein related to the periplasmic	99.41
KOG2314	698	consensus Translation initiation factor 3, subunit	99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.33
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.31
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.28
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.28
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.26
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.25
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.24
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.24
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.23
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.22
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.18
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.17
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.14
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.12
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.1
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.07
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	99.05
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.03
KOG2695	425	consensus WD40 repeat protein [General function pr	99.02
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.01
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.98
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.97
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.96
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.95
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.92
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.91
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.91
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.89
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.86
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.84
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.83
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.83
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.81
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.8
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.78
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.77
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.72
KOG3621	726	consensus WD40 repeat-containing protein [General	98.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.71
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.7
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.7
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.68
KOG2695	425	consensus WD40 repeat protein [General function pr	98.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.61
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.61
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.6
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.56
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.56
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.56
KOG3621	726	consensus WD40 repeat-containing protein [General	98.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.52
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.5
PRK02888	635	nitrous-oxide reductase; Validated	98.49
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.47
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.46
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.44
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.41
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.4
PRK02888	635	nitrous-oxide reductase; Validated	98.33
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	98.29
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.25
COG3391	381	Uncharacterized conserved protein [Function unknow	98.19
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.18
PRK13616	591	lipoprotein LpqB; Provisional	98.12
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.11
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.1
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.06
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.03
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.02
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.96
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.93
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.89
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.86
PRK13616	591	lipoprotein LpqB; Provisional	97.86
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.86
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.84
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.84
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.82
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.8
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.78
PHA02713	557	hypothetical protein; Provisional	97.76
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.76
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.74
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.72
COG3391	381	Uncharacterized conserved protein [Function unknow	97.65
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.65
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.61
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.6
PRK13684	334	Ycf48-like protein; Provisional	97.59
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.54
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.49
PHA02713	557	hypothetical protein; Provisional	97.46
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.38
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.38
KOG2444	238	consensus WD40 repeat protein [General function pr	97.36
KOG2395	644	consensus Protein involved in vacuole import and d	97.34
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.32
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.28
PHA03098	534	kelch-like protein; Provisional	97.26
KOG2395	644	consensus Protein involved in vacuole import and d	97.23
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.19
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.13
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.04
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.01
PHA02790	480	Kelch-like protein; Provisional	96.98
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.93
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.91
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.89
PRK13684	334	Ycf48-like protein; Provisional	96.86
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.83
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.77
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.71
KOG2444	238	consensus WD40 repeat protein [General function pr	96.7
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.63
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.6
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.54
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.53
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.48
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.45
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.41
PRK10115	686	protease 2; Provisional	96.23
COG5276	370	Uncharacterized conserved protein [Function unknow	96.23
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.13
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.07
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.06
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.95
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.88
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.85
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.73
PLN02153	341	epithiospecifier protein	95.59
PHA03098	534	kelch-like protein; Provisional	95.58
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.57
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.55
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.5
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	95.48
COG5276	370	Uncharacterized conserved protein [Function unknow	95.4
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.33
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	95.26
PHA02790	480	Kelch-like protein; Provisional	95.15
PLN02193	470	nitrile-specifier protein	95.15
PLN02153	341	epithiospecifier protein	95.04
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.91
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.81
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.72
COG4590	733	ABC-type uncharacterized transport system, permeas	94.57
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.53
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.49
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.47
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.37
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.21
PLN02193	470	nitrile-specifier protein	94.13
PRK10115	686	protease 2; Provisional	94.08
COG5167	776	VID27 Protein involved in vacuole import and degra	93.86
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.79
COG4590	733	ABC-type uncharacterized transport system, permeas	93.68
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.58
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.57
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.49
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.43
COG5167	776	VID27 Protein involved in vacuole import and degra	93.37
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.23
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.02
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.98
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.86
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.76
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.68
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.66
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.58
KOG2247	615	consensus WD40 repeat-containing protein [General	92.51
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.4
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.28
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.17
KOG2247	615	consensus WD40 repeat-containing protein [General	92.13
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.12
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.87
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.85
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.48
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	91.35
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.21
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.97
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.51
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.51
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.15
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.05
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.43
PRK13615	557	lipoprotein LpqB; Provisional	89.13
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	88.87
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	88.6
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.26
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	88.05
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.8
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.52
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.49
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.86
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.52
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	86.44
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	86.3
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.7
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	84.38
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	83.76
PRK13615	557	lipoprotein LpqB; Provisional	83.68
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	83.42
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	83.17
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	82.8
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	82.5

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-54  Score=338.03  Aligned_cols=297  Identities=15%  Similarity=0.250  Sum_probs=261.9

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+-+|.++|.|++|+|+|..||+|+.|.++++||+.+.  .+..+.++|...|.|++|+|||+.||+|+.||+|++||.
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            456799999999999999999999999999999999998  789999999999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSP-----KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      ++++.+.. .+.+|...|++++|.|     ..++|++++.||.++|||+..+.   +...+ .+|..+|+|+.|--+ .+
T Consensus       187 ktg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~---~~~~l-sgHT~~VTCvrwGG~-gl  260 (480)
T KOG0271|consen  187 KTGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT---CVRTL-SGHTASVTCVRWGGE-GL  260 (480)
T ss_pred             CCCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce---EEEEe-ccCccceEEEEEcCC-ce
Confidence            99875544 3478999999999977     56799999999999999999887   45666 899999999999643 58


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC-----------CCCC----------
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS-----------PSGN----------  217 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------p~~~----------  217 (379)
                      +++|+.|++|++|+.                  ..+.+...+.+|..+|+.++++           |.++          
T Consensus       261 iySgS~DrtIkvw~a------------------~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  261 IYSGSQDRTIKVWRA------------------LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             EEecCCCceEEEEEc------------------cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence            999999999999996                  5688899999999999999887           2233          


Q ss_pred             ---------------EEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcE
Q 016982          218 ---------------TLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIW  281 (379)
Q Consensus       218 ---------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~  281 (379)
                                     .|++|+.|.++.+|+....++.+..+.+|..-|+.+.||||++++| ++.|..+++|+...++..
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l  402 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL  402 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh
Confidence                           4999999999999998887777788999999999999999999999 789999999997765311


Q ss_pred             EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982          282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG  361 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg  361 (379)
                      .                                              .+.||-+.|+.++ ++.|.    ++|++||.|.
T Consensus       403 a----------------------------------------------sfRGHv~~VYqva-wsaDs----RLlVS~SkDs  431 (480)
T KOG0271|consen  403 A----------------------------------------------SFRGHVAAVYQVA-WSADS----RLLVSGSKDS  431 (480)
T ss_pred             h----------------------------------------------hhhhccceeEEEE-eccCc----cEEEEcCCCc
Confidence            1                                              3479999999999 77776    9999999999


Q ss_pred             eEEEEeCCCccccccC
Q 016982          362 KIVTWDLESQEDLLNY  377 (379)
Q Consensus       362 ~v~iW~~~~~~~~~~~  377 (379)
                      ++++|++++.+..+.|
T Consensus       432 TLKvw~V~tkKl~~DL  447 (480)
T KOG0271|consen  432 TLKVWDVRTKKLKQDL  447 (480)
T ss_pred             eEEEEEeeeeeecccC
Confidence            9999999987765543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.7e-52  Score=331.02  Aligned_cols=282  Identities=19%  Similarity=0.215  Sum_probs=256.7

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC--CCEEEEEeCCCeEEEEeccC
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~   85 (379)
                      +-..+|..+.|++|++.||+|+.+|.+++|+..+.  ..+.+|.+|...|.++.|+|.  +..+++|+.||++++|++.+
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            34679999999999999999999999999999887  789999999999999999997  56899999999999999998


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ...+..+  .+|...|..++|+|+|++|++++.|.+-++||++++..    -..+.+|...|.+++|+|||.++++|+.|
T Consensus       251 e~~l~~l--~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGSL~~tGGlD  324 (459)
T KOG0272|consen  251 ETPLQDL--EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGSLAATGGLD  324 (459)
T ss_pred             Ccchhhh--hcchhhheeeeecCCCceeeecccccchhhcccccchh----hHhhcccccccceeEecCCCceeeccCcc
Confidence            8755555  78999999999999999999999999999999999873    22338999999999999999999999999


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      ..-+|||+                  +++.++..+.+|..+|.+++|+|+|..||+|+.|++++|||++.... +.++.+
T Consensus       325 ~~~RvWDl------------------Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipA  385 (459)
T KOG0272|consen  325 SLGRVWDL------------------RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPA  385 (459)
T ss_pred             chhheeec------------------ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceeccc
Confidence            99999997                  89999999999999999999999999999999999999999998875 588899


Q ss_pred             ecCCeeeEEEec-CCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccc
Q 016982          246 RDLPLRDVLFVS-EKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAV  323 (379)
Q Consensus       246 ~~~~i~~~~~s~-~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (379)
                      |..-|+.|.|+| .|.+|+ +++|+++++|....   |..++                                      
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~---~~~~k--------------------------------------  424 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT---WSPLK--------------------------------------  424 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCcceeeecCCC---cccch--------------------------------------
Confidence            999999999999 677877 88999999998654   55544                                      


Q ss_pred             ccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          324 ESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       324 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                           .+.||.+.|.+++ .++++    ++++|+|.|.++++|.
T Consensus       425 -----sLaGHe~kV~s~D-is~d~----~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  425 -----SLAGHEGKVISLD-ISPDS----QAIATSSFDRTIKLWR  458 (459)
T ss_pred             -----hhcCCccceEEEE-eccCC----ceEEEeccCceeeecc
Confidence                 4479999999999 77766    9999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-50  Score=316.47  Aligned_cols=287  Identities=16%  Similarity=0.250  Sum_probs=252.2

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-----CCCEEEEEeCCCeE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-----RSNRIVTVSHDRNS   78 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i   78 (379)
                      .+.++|...|.|++|+|||+.||+|+.||.|++||.++++ +....|.+|...|++++|.|     ..++|++++.||.+
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v  229 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV  229 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-cccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence            4678999999999999999999999999999999998874 67788999999999999976     45799999999999


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc-----
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH-----  153 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----  153 (379)
                      +|||+..+.++..+  .+|..+|+|+.|--+| +|++++.|++|++|+...+.   +.+.+ .+|...|+.++.+     
T Consensus       230 rIWd~~~~~~~~~l--sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~---~~r~l-kGHahwvN~lalsTdy~L  302 (480)
T KOG0271|consen  230 RIWDTKLGTCVRTL--SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK---LCREL-KGHAHWVNHLALSTDYVL  302 (480)
T ss_pred             EEEEccCceEEEEe--ccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh---HHHhh-cccchheeeeeccchhhh
Confidence            99999999865554  8899999999998554 89999999999999988876   56777 8999999988876     


Q ss_pred             ------CCCc-------------------------EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982          154 ------PNNV-------------------------FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL  202 (379)
Q Consensus       154 ------p~~~-------------------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (379)
                            |.++                         .|++|+.|.++.+|+.                 ....+++..+.+
T Consensus       303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p-----------------~~~kkpi~rmtg  365 (480)
T KOG0271|consen  303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP-----------------FKSKKPITRMTG  365 (480)
T ss_pred             hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc-----------------cccccchhhhhc
Confidence                  3233                         4999999999999986                 366778889999


Q ss_pred             CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcE
Q 016982          203 SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIW  281 (379)
Q Consensus       203 ~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~  281 (379)
                      |..-|+.+.||||++++|+++-|..|++||.++++. +..+.+|-.+|+.++|+.|.++|+ ++.|.++++|+....+  
T Consensus       366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK--  442 (480)
T KOG0271|consen  366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK--  442 (480)
T ss_pred             hhhheeeEEECCCccEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee--
Confidence            999999999999999999999999999999999885 489999999999999999999998 6678899999865432  


Q ss_pred             EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982          282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG  361 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg  361 (379)
                       +..                                           -+.||.++|.++. ++|||    ..+++||.|.
T Consensus       443 -l~~-------------------------------------------DLpGh~DEVf~vD-wspDG----~rV~sggkdk  473 (480)
T KOG0271|consen  443 -LKQ-------------------------------------------DLPGHADEVFAVD-WSPDG----QRVASGGKDK  473 (480)
T ss_pred             -ecc-------------------------------------------cCCCCCceEEEEE-ecCCC----ceeecCCCce
Confidence             111                                           3479999999999 87776    9999999999


Q ss_pred             eEEEEe
Q 016982          362 KIVTWD  367 (379)
Q Consensus       362 ~v~iW~  367 (379)
                      .+++|.
T Consensus       474 v~~lw~  479 (480)
T KOG0271|consen  474 VLRLWR  479 (480)
T ss_pred             EEEeec
Confidence            999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.1e-46  Score=282.14  Aligned_cols=287  Identities=15%  Similarity=0.192  Sum_probs=248.1

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..|++|.+.|+++.|++|.++|++++.||.+.|||.-+.  .+++.++-....|..++|+|.|++++.|+-|+...||++
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l  126 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL  126 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence            468999999999999999999999999999999999887  567777777889999999999999999999999999999


Q ss_pred             cCC--c--eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcE
Q 016982           84 EGS--E--WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVF  158 (379)
Q Consensus        84 ~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~  158 (379)
                      .+.  +  ......+.+|.+.+.++.|-+| ..|++++.|.+..+||+++++   ....+ .+|.+.|.+++++| +++.
T Consensus       127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~---~~~~f-~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQ---QTQVF-HGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccce---EEEEe-cCCcccEEEEecCCCCCCe
Confidence            855  1  1222335789999999999985 568899999999999999998   46666 89999999999999 8899


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      +++|+-|+..++||+                  +.+.++++|.+|...|+++.|.|+|.-+++|+.|++.++||++...+
T Consensus       202 FvSg~cD~~aklWD~------------------R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~  263 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDV------------------RSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE  263 (343)
T ss_pred             EEecccccceeeeec------------------cCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence            999999999999997                  78899999999999999999999999999999999999999999775


Q ss_pred             eeeeeee--ecCCeeeEEEecCCcEEEE-EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccc
Q 016982          239 LAQNVAF--RDLPLRDVLFVSEKMVIGV-GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSK  315 (379)
Q Consensus       239 ~~~~~~~--~~~~i~~~~~s~~~~~l~~-~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (379)
                      + ..+..  ...+|++++||..|++|.+ ..|.++.+|+.-.....-                                 
T Consensus       264 ~-a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg---------------------------------  309 (343)
T KOG0286|consen  264 L-AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG---------------------------------  309 (343)
T ss_pred             E-eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE---------------------------------
Confidence            4 44432  2467999999999999886 456688888743322111                                 


Q ss_pred             ccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          316 YGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       316 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                   .+.||.+.|.|+. .+|||    .-|+|||+|..+|||.
T Consensus       310 -------------~L~GHeNRvScl~-~s~DG----~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  310 -------------VLAGHENRVSCLG-VSPDG----MAVATGSWDSTLRIWA  343 (343)
T ss_pred             -------------EeeccCCeeEEEE-ECCCC----cEEEecchhHheeecC
Confidence                         3469999999999 77776    8999999999999994

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-44  Score=271.33  Aligned_cols=298  Identities=20%  Similarity=0.363  Sum_probs=251.1

Q ss_pred             cceeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEec-CCceEEEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982            4 IAVHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLI-QEKWEKLHVL-QKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      ..+.+|.+.+..++|+|- |..||+++.|+.|++|+.. ...+.+...+ .+|...|.+++|+|.|++|++++.|.++.|
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI   87 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence            457789999999999997 8899999999999999998 4446666666 468999999999999999999999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      |.-..+++...-.+.+|...|.+++|+++|++||+++.|+.|-||.........+...+ ..|...|..+.|+|...+|+
T Consensus        88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~  166 (312)
T KOG0645|consen   88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLF  166 (312)
T ss_pred             eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeE
Confidence            99988887777778899999999999999999999999999999999988877788888 89999999999999999999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      ++++|.+|++|+-.      .         .....++.++.+|...|++++|+|.|..|++++.|++++||-....-   
T Consensus       167 S~SYDnTIk~~~~~------~---------dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---  228 (312)
T KOG0645|consen  167 SCSYDNTIKVYRDE------D---------DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---  228 (312)
T ss_pred             EeccCCeEEEEeec------C---------CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---
Confidence            99999999999741      0         14568899999999999999999999999999999999999865322   


Q ss_pred             eeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC---CcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982          241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET---GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG  317 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (379)
                        -..|..+++.+.|. +|-+-.++.|+.+++|.....   ..|++..                                
T Consensus       229 --~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~--------------------------------  273 (312)
T KOG0645|consen  229 --SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLA--------------------------------  273 (312)
T ss_pred             --chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHH--------------------------------
Confidence              12366789999998 555555888999998875421   1121110                                


Q ss_pred             CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                ..-..|...|++|. +.|..   ..+|++||+||.|++|.+.
T Consensus       274 ----------~~~~aHe~dVNsV~-w~p~~---~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  274 ----------KKEGAHEVDVNSVQ-WNPKV---SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ----------hhhcccccccceEE-EcCCC---CCceeecCCCceEEEEEec
Confidence                      02257999999999 65532   3799999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-44  Score=269.85  Aligned_cols=299  Identities=15%  Similarity=0.175  Sum_probs=247.7

Q ss_pred             cceeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEecCCc---eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982            4 IAVHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLIQEK---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY   79 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (379)
                      .++.+|.+.|+.++..+. ...++++++|..+.+|++....   ..+++.+.+|...|..+..+++|++.++++.|++++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr   88 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR   88 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence            467899999999999886 4688899999999999997643   256889999999999999999999999999999999


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC--Cc
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN--NV  157 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~  157 (379)
                      +||+.+++..+.+  .+|...|.+++|++|.+++++|+.|++|++|+......   .......+.+.|.|+.|+|+  ..
T Consensus        89 lWDl~~g~~t~~f--~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck---~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   89 LWDLATGESTRRF--VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK---YTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             EEEecCCcEEEEE--EecCCceEEEEecCCCceeecCCCcceeeeeeecccEE---EEEecCCCcCcEEEEEEcCCCCCc
Confidence            9999999755544  78999999999999999999999999999999877642   22221334889999999998  68


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      +|++++.|+++++||+                  ...+....+.+|.+.++.+++||||.+.++|+.||.+.+||++.++
T Consensus       164 ~Ivs~s~DktvKvWnl------------------~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k  225 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNL------------------RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK  225 (315)
T ss_pred             EEEEccCCceEEEEcc------------------CCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence            9999999999999997                  6667778889999999999999999999999999999999999987


Q ss_pred             ceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982          238 PLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG  317 (379)
Q Consensus       238 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (379)
                      .+ ..+. +...|.+++|+|+...|+.+.+..|+||+.+......-.+. +..  ..                       
T Consensus       226 ~l-ysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~-d~~--g~-----------------------  277 (315)
T KOG0279|consen  226 NL-YSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKL-DGI--GP-----------------------  277 (315)
T ss_pred             ee-Eecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccc-ccc--cc-----------------------
Confidence            53 5554 78899999999999999999999999999887543322210 000  00                       


Q ss_pred             CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                 ...+-.....+++ ++.+|    ..|..|-.|+.|++|.+.
T Consensus       278 -----------s~~~~~~~clsla-ws~dG----~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  278 -----------SSKAGDPICLSLA-WSADG----QTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             -----------ccccCCcEEEEEE-EcCCC----cEEEeeecCCcEEEEEee
Confidence                       0011223345666 77666    899999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.8e-44  Score=264.65  Aligned_cols=279  Identities=14%  Similarity=0.175  Sum_probs=239.1

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCcee
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAAL  102 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~  102 (379)
                      -+|+++++|.+|++|...++  .+..+++..+..|+.+.+.|+++.|++++. ..|++||+.++...+...+..|...|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            57899999999999999998  899999988889999999999999998876 579999999998777888889999999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccccc
Q 016982          103 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE  182 (379)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~  182 (379)
                      .+.|..+|+++++|++||+++|||++...   +.+.  ..|..+|+++..+|+...|++|..+|.|++||+         
T Consensus        88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~---~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl---------  153 (311)
T KOG0315|consen   88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLS---CQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDL---------  153 (311)
T ss_pred             EEEEeecCeEEEecCCCceEEEEeccCcc---cchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEc---------
Confidence            99999999999999999999999999865   3444  478899999999999999999999999999998         


Q ss_pred             ccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-----ceeeeeeeecCCeeeEEEe
Q 016982          183 KKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS-----PLAQNVAFRDLPLRDVLFV  256 (379)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~i~~~~~s  256 (379)
                               ....+...+ ......|.++...|||.+|+.+...|..++|++.+..     +.+..++.|..-+..+.+|
T Consensus       154 ---------~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS  224 (311)
T KOG0315|consen  154 ---------GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS  224 (311)
T ss_pred             ---------cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence                     223233322 2334679999999999999999999999999986532     2345677889999999999


Q ss_pred             cCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc
Q 016982          257 SEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN  335 (379)
Q Consensus       257 ~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  335 (379)
                      ||+++|| ++.|.+++||+.++-  .+...                                           .+.+|..
T Consensus       225 Pd~k~lat~ssdktv~iwn~~~~--~kle~-------------------------------------------~l~gh~r  259 (311)
T KOG0315|consen  225 PDVKYLATCSSDKTVKIWNTDDF--FKLEL-------------------------------------------VLTGHQR  259 (311)
T ss_pred             CCCcEEEeecCCceEEEEecCCc--eeeEE-------------------------------------------EeecCCc
Confidence            9999999 788999999997753  23222                                           3368999


Q ss_pred             ceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          336 CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       336 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      -+..++ |+.|+    +||+||+.|+.+|+|++..++.++.+
T Consensus       260 WvWdc~-FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy  296 (311)
T KOG0315|consen  260 WVWDCA-FSADG----EYLVTASSDHTARLWDLSAGKEVRQY  296 (311)
T ss_pred             eEEeee-eccCc----cEEEecCCCCceeecccccCceeeec
Confidence            999999 88887    99999999999999999998877654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8.4e-46  Score=294.20  Aligned_cols=244  Identities=18%  Similarity=0.234  Sum_probs=224.7

Q ss_pred             cceeccCcceeEEEeCCC--CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982            4 IAVHQFAQCITCHAWSPD--HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      .++.+|.+.|.++.|+|.  +..+|+|+.||++++|++++.  .++..+.+|...|..++|+|+|++|+|++.|.+-++|
T Consensus       211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW  288 (459)
T KOG0272|consen  211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW  288 (459)
T ss_pred             EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence            468899999999999996  568999999999999999987  7899999999999999999999999999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      |++++....  ...+|...|.+++|+|||.++++|+.|..-+|||++++.   ..-.+ .+|..+|.+++|+|+|..|||
T Consensus       289 D~~tk~ElL--~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr---~im~L-~gH~k~I~~V~fsPNGy~lAT  362 (459)
T KOG0272|consen  289 DLETKSELL--LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR---CIMFL-AGHIKEILSVAFSPNGYHLAT  362 (459)
T ss_pred             ccccchhhH--hhcccccccceeEecCCCceeeccCccchhheeecccCc---EEEEe-cccccceeeEeECCCceEEee
Confidence            999997433  337899999999999999999999999999999999998   34444 889999999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      |+.|++++|||+                  +...++.++.+|..-|+.+.|+| .|.+|++++.|+++++|...+.. ++
T Consensus       363 gs~Dnt~kVWDL------------------R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-~~  423 (459)
T KOG0272|consen  363 GSSDNTCKVWDL------------------RMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-PL  423 (459)
T ss_pred             cCCCCcEEEeee------------------cccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc-cc
Confidence            999999999998                  55667899999999999999999 78999999999999999987766 56


Q ss_pred             eeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          241 QNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      +.+.+|.+.|.++..++|+++++ ++.|.++++|.
T Consensus       424 ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  424 KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999999999888 78999999985

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.5e-46  Score=292.96  Aligned_cols=284  Identities=16%  Similarity=0.216  Sum_probs=244.0

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      .+.+|..+.|.|+|+.|++|+..|.+.+|+...  +.....++.|+.+|.++.|++++.++++|+.+|.|++|+......
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV  172 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV  172 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCce--eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence            356899999999999999999999999999754  345566789999999999999999999999999999999876652


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                      . .+ ...|...|++++|+|+...++++++||+|+|||......   ...+ .+|.-.|.+++|+|...++++++.|..|
T Consensus       173 k-~~-~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke---e~vL-~GHgwdVksvdWHP~kgLiasgskDnlV  246 (464)
T KOG0284|consen  173 K-II-QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE---ERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLV  246 (464)
T ss_pred             H-Hh-hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch---hhee-ccCCCCcceeccCCccceeEEccCCcee
Confidence            2 22 133458999999999999999999999999999988773   4555 8999999999999999999999999999


Q ss_pred             EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL  248 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  248 (379)
                      ++||.                  +++.|+.++..|...|..+.|+|++++|+++|.|..++++|+++.+++ ..+++|..
T Consensus       247 KlWDp------------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-~~~r~Hkk  307 (464)
T KOG0284|consen  247 KLWDP------------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-FTYRGHKK  307 (464)
T ss_pred             EeecC------------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH-HHhhcchh
Confidence            99996                  899999999999999999999999999999999999999999976654 88889999


Q ss_pred             CeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982          249 PLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS  326 (379)
Q Consensus       249 ~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (379)
                      .++++.|+|-. .+++ +|.|+.+..|......                                             +.
T Consensus       308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~---------------------------------------------p~  342 (464)
T KOG0284|consen  308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE---------------------------------------------PL  342 (464)
T ss_pred             hheeeccccccccceeeccCCCceEEEeccccc---------------------------------------------cc
Confidence            99999999943 3444 8899999988754111                                             01


Q ss_pred             cccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          327 RTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       327 ~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                      ..+..+|...|++++++     |-|.+|+||+.|.++|+|.-.
T Consensus       343 ~~i~~AHd~~iwsl~~h-----PlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  343 GEIPPAHDGEIWSLAYH-----PLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             cCCCcccccceeeeecc-----ccceeEeecCCCcceeeeccC
Confidence            11335899999999954     445999999999999999754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=100.00  E-value=1e-42  Score=267.60  Aligned_cols=359  Identities=53%  Similarity=0.956  Sum_probs=319.4

Q ss_pred             CcccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982            1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY   79 (379)
Q Consensus         1 m~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (379)
                      |+...++-...+|+|.+|++|+..+|++.++..|.||.....+ ++..+++..|...|+.+.|+|..+.|++++.|..-+
T Consensus         1 ~~~~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay   80 (361)
T KOG1523|consen    1 MAVVVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY   80 (361)
T ss_pred             CceEEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence            4455566668999999999999999999999999999999887 899999999999999999999999999999999999


Q ss_pred             EEec-cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982           80 VWNQ-EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        80 vw~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      +|.. ..+++.+.+.+..++..++++.|+|.++.|++|+....|.||-++..+.|++.+.+...+...|.+++|+|++-+
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence            9999 788999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      |++|+.|+.++||...++++|.++.+.++....+.++.+.++....+.+..+.|+|+|..|+..+.|..+.+-|...+.+
T Consensus       161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~  240 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE  240 (361)
T ss_pred             ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch
Confidence            99999999999999999999999999999999999999888877788999999999999999999999999999888765


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      .++.+.....|..++.|-.+...+++++|....+|..++.+.|.+...++.+.......     ...++.+|++.+++++
T Consensus       241 ~v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~~~~ld~p~~s~s~~-----lt~a~~kF~~~d~k~~  315 (361)
T KOG1523|consen  241 RVQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSFARRLDAPKASSSSP-----LTSAWRKFLGMDRKGR  315 (361)
T ss_pred             hccchhhccCCceeeEeecCCceeecCCCCCceEEEeccccceeeehhcCCccccCCch-----hHHHHHHHhccccccc
Confidence            55666656689999999999999999999999999999988899999888765554322     2237888998888877


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                      .+......   ...|.+.|+.++.|.... +.-..+-|+|.||.|.+|++
T Consensus       316 ~~~~~~~~---~~~h~N~i~~l~~~~~~~-~~i~~f~t~g~Dg~~viw~l  361 (361)
T KOG1523|consen  316 TENDRSAR---WGAHQNCITSLRPFAGGK-GKITKFSTSGLDGKLVIWDL  361 (361)
T ss_pred             cccccccc---chHhHhhhhhhhecccCC-cceEEEEecCccceEEEecC
Confidence            66554332   467999999999888443 55568889999999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-40  Score=270.13  Aligned_cols=296  Identities=20%  Similarity=0.287  Sum_probs=236.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec---cCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ---KHDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      .+..|..-|.|+.|+|||+++|+++.||+|.+||-.++  +.+..+.   +|.+.|.+++|+||+.++++++.|.+++||
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW  262 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW  262 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence            45668889999999999999999999999999999887  6777777   899999999999999999999999999999


Q ss_pred             eccCCceeeeE-----------------------------------------EeecCCCceeEEEECCCCCEEEEEeCCC
Q 016982           82 NQEGSEWVPTL-----------------------------------------VILRLNRAALCVQWSPKENKFAVGSGAK  120 (379)
Q Consensus        82 ~~~~~~~~~~~-----------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~  120 (379)
                      |+.+.+++..+                                         ...+|...|+++..+|++++|++|+.||
T Consensus       263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence            98776443322                                         2457888999999999999999999999


Q ss_pred             eEEEEEeecCCceeE----------------------------EEEE-------------e-------------------
Q 016982          121 TVCICYYEQENNWWV----------------------------SKLI-------------R-------------------  140 (379)
Q Consensus       121 ~v~i~~~~~~~~~~~----------------------------~~~~-------------~-------------------  140 (379)
                      .|.-|+...+....+                            .+.+             .                   
T Consensus       343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv  422 (603)
T KOG0318|consen  343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV  422 (603)
T ss_pred             eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence            999999865431100                            0000             0                   


Q ss_pred             ---------ec--------CCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          141 ---------KR--------HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       141 ---------~~--------~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                               ..        -.-...+++++|+++.++.|+.|+.++||.+..                ...........|
T Consensus       423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g----------------~~l~ee~~~~~h  486 (603)
T KOG0318|consen  423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG----------------DELKEEAKLLEH  486 (603)
T ss_pred             EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC----------------Ccccceeeeecc
Confidence                     00        011235788899999999999999999998731                111233345678


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEE
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWT  282 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~  282 (379)
                      .++|+.++||||+.+||++...+.+.+||+.+.+........|...|.+++|+|+..++| ++-|..+.+|+.+.....-
T Consensus       487 ~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i  566 (603)
T KOG0318|consen  487 RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI  566 (603)
T ss_pred             cCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence            999999999999999999999999999999988765566667999999999999999999 5568899999876533211


Q ss_pred             EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCce
Q 016982          283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK  362 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  362 (379)
                      .                                             +..+|...|+.++|..+      ..|+|.|.|..
T Consensus       567 ~---------------------------------------------iknAH~~gVn~v~wlde------~tvvSsG~Da~  595 (603)
T KOG0318|consen  567 I---------------------------------------------IKNAHLGGVNSVAWLDE------STVVSSGQDAN  595 (603)
T ss_pred             E---------------------------------------------eccccccCceeEEEecC------ceEEeccCcce
Confidence            1                                             22579888999996533      58999999999


Q ss_pred             EEEEeCC
Q 016982          363 IVTWDLE  369 (379)
Q Consensus       363 v~iW~~~  369 (379)
                      |++|++.
T Consensus       596 iK~W~v~  602 (603)
T KOG0318|consen  596 IKVWNVT  602 (603)
T ss_pred             eEEeccc
Confidence            9999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.3e-41  Score=289.08  Aligned_cols=247  Identities=21%  Similarity=0.270  Sum_probs=222.9

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-----------------------------eEEEEEeccCCCc
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-----------------------------WEKLHVLQKHDQI   56 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-----------------------------~~~~~~~~~~~~~   56 (379)
                      ++.....++|+.|++|+++||.|-.|..|++|.+...+                             .....++.+|.++
T Consensus       374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP  453 (707)
T KOG0263|consen  374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP  453 (707)
T ss_pred             EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence            44456789999999999999999999999999987311                             1234568899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE
Q 016982           57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS  136 (379)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  136 (379)
                      |..+.|+|+.++|++++.|+++++|.+.+..+...+  .+|..+|+++.|+|.|-++|+++.|++-++|..+...   ..
T Consensus       454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y--~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~---Pl  528 (707)
T KOG0263|consen  454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY--KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK---PL  528 (707)
T ss_pred             eeeeeecccccceeeccCCcceeeeecccceeEEEe--cCCCcceeeEEecCCceEEEecCCCceeeeeecccCC---ch
Confidence            999999999999999999999999999998865555  6899999999999999999999999999999988866   35


Q ss_pred             EEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC
Q 016982          137 KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG  216 (379)
Q Consensus       137 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  216 (379)
                      +.+ .+|.+.|.|+.|+|+..|+++|+.|.+|++||+                  .++..++.|.+|.++|.+++|||+|
T Consensus       529 Rif-aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv------------------~~G~~VRiF~GH~~~V~al~~Sp~G  589 (707)
T KOG0263|consen  529 RIF-AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV------------------STGNSVRIFTGHKGPVTALAFSPCG  589 (707)
T ss_pred             hhh-cccccccceEEECCcccccccCCCCceEEEEEc------------------CCCcEEEEecCCCCceEEEEEcCCC
Confidence            666 899999999999999999999999999999997                  7899999999999999999999999


Q ss_pred             CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          217 NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       217 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      ++|++|+.|+.|.+||+.++.. +..+.+|.+.|.++.|+.||..|+ +|.|+++++|+...
T Consensus       590 r~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  590 RYLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             ceEeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            9999999999999999999874 477788999999999999999988 77899999998654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-41  Score=264.91  Aligned_cols=287  Identities=16%  Similarity=0.179  Sum_probs=254.2

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|..+|+.+-|+|+-..+++++.|++|++||..++  +....+++|.+.+..++|+..|++|++++.|-.+++||.
T Consensus       102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             hhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence            346789999999999999999999999999999999998  668999999999999999999999999999999999999


Q ss_pred             cCC-ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           84 EGS-EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      .+. +++...  .+|...|.++.|-|.|.++++++.|.+|+.|++.++-   +.+.+ .+|...|..++.+.||.+++++
T Consensus       180 ~~~~~c~ks~--~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~---cv~t~-~~h~ewvr~v~v~~DGti~As~  253 (406)
T KOG0295|consen  180 DTFFRCIKSL--IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY---CVKTF-PGHSEWVRMVRVNQDGTIIASC  253 (406)
T ss_pred             HHHHHHHHHh--cCcccceeeEEEEecCCeeeecccccceeEEecccce---eEEec-cCchHhEEEEEecCCeeEEEec
Confidence            873 333333  6788999999999999999999999999999999987   57777 8999999999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC---------------CCEEEEEcCCCe
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS---------------GNTLAYVGHNSM  227 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---------------~~~l~~~~~d~~  227 (379)
                      +.|.++++|-+                  .+.++...+..|..+|-+++|.|.               +.++++++.|++
T Consensus       254 s~dqtl~vW~~------------------~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt  315 (406)
T KOG0295|consen  254 SNDQTLRVWVV------------------ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT  315 (406)
T ss_pred             CCCceEEEEEe------------------ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence            99999999986                  677778888899999999999873               358999999999


Q ss_pred             EEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccc
Q 016982          228 IYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEA  306 (379)
Q Consensus       228 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (379)
                      |++||+.++. ++.++.+|...|..++|+|.|+||+ ++.|+++++|++.+..+.+.                       
T Consensus       316 Ik~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~-----------------------  371 (406)
T KOG0295|consen  316 IKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT-----------------------  371 (406)
T ss_pred             EEEEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec-----------------------
Confidence            9999999987 6688999999999999999999998 67888999999887543332                       


Q ss_pred             cceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          307 FGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                                             +.+|..-|++++ |..+.    .+++||+.|..+++|..
T Consensus       372 -----------------------~~ah~hfvt~lD-fh~~~----p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  372 -----------------------LEAHEHFVTSLD-FHKTA----PYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             -----------------------cCCCcceeEEEe-cCCCC----ceEEeccccceeeeeec
Confidence                                   246888999999 55554    69999999999999975

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.3e-41  Score=260.99  Aligned_cols=295  Identities=16%  Similarity=0.192  Sum_probs=255.5

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.++  ++..++.+|-..|..+++|+...|+++++.|+.|+.||++
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            46789999999999999999999999999999999998  7888999999999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ..+.++.+  .+|-..|.+++.+|.-..|++|+.|..+++||+++...   ...+ .+|..+|..+.+.|-+..+++|+.
T Consensus       224 ~nkvIR~Y--hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~---V~~l-~GH~~~V~~V~~~~~dpqvit~S~  297 (460)
T KOG0285|consen  224 YNKVIRHY--HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS---VHVL-SGHTNPVASVMCQPTDPQVITGSH  297 (460)
T ss_pred             hhhhHHHh--ccccceeEEEeccccceeEEecCCcceEEEeeecccce---EEEe-cCCCCcceeEEeecCCCceEEecC
Confidence            99977776  78999999999999999999999999999999999873   5555 899999999999998899999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      |++|++||+                  ..++...++..|...+.+++.+|....+++++.| .|+-|++..+.-+ +.+.
T Consensus       298 D~tvrlWDl------------------~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~-~nls  357 (460)
T KOG0285|consen  298 DSTVRLWDL------------------RAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFL-QNLS  357 (460)
T ss_pred             CceEEEeee------------------ccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchh-hccc
Confidence            999999997                  7788888999999999999999999999988776 5899999988744 6688


Q ss_pred             eecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccc
Q 016982          245 FRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVE  324 (379)
Q Consensus       245 ~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (379)
                      +|..-|++++...||-+++++..+.+.+|+...+..++.......+                          |.      
T Consensus       358 gh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp--------------------------GS------  405 (460)
T KOG0285|consen  358 GHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP--------------------------GS------  405 (460)
T ss_pred             cccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccC--------------------------Cc------
Confidence            9999999999999999998998899999987665433332211000                          00      


Q ss_pred             cccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          325 SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       325 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                            ..-+..|.+.+ |...+    ..|+||..|.+|++|.-.+
T Consensus       406 ------l~sEagI~as~-fDktg----~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  406 ------LESEAGIFASC-FDKTG----SRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             ------cccccceeEEe-ecccC----ceEEeccCCcceEEEeccc
Confidence                  01245688887 76555    8999999999999998654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.8e-40  Score=252.87  Aligned_cols=287  Identities=13%  Similarity=0.106  Sum_probs=241.2

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      +.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|+.... .+-...+++|.+.|..+.|.+|++.|++++.|++++.||+
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~  119 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA  119 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence            457889999999999999999999999999999997654 3667788899999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      ++++....+  ..|..-|..+.-+.-| .++.+++.|+++++||++...   ..+.+  ....+++++.|..++..+.+|
T Consensus       120 ~tG~~~rk~--k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~---~~~t~--~~kyqltAv~f~d~s~qv~sg  192 (338)
T KOG0265|consen  120 ETGKRIRKH--KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE---AIKTF--ENKYQLTAVGFKDTSDQVISG  192 (338)
T ss_pred             ccceeeehh--ccccceeeecCccccCCeEEEecCCCceEEEEeecccc---hhhcc--ccceeEEEEEecccccceeec
Confidence            999976665  6788889888854444 466778889999999999877   34443  456788999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC---Cce
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP---SPL  239 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~---~~~  239 (379)
                      +-|+.|++||+                  +.....+.+.+|...|+.+..+|+|.++.+-+.|.++++||++--   .++
T Consensus       193 gIdn~ikvWd~------------------r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  193 GIDNDIKVWDL------------------RKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             cccCceeeecc------------------ccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence            99999999997                  677889999999999999999999999999999999999998653   334


Q ss_pred             eeeeeeec----CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccc
Q 016982          240 AQNVAFRD----LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQS  314 (379)
Q Consensus       240 ~~~~~~~~----~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (379)
                      +..+.+|.    .....++|+|++..+. ++.|..+++|+....+   ++                          |   
T Consensus       255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---~l--------------------------y---  302 (338)
T KOG0265|consen  255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---IL--------------------------Y---  302 (338)
T ss_pred             EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc---EE--------------------------E---
Confidence            56666553    2356789999999887 6788899999866533   11                          1   


Q ss_pred             cccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          315 KYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                    .+.||.+.|++++|+ |.    ..+|.+|+.|.+|.+=+
T Consensus       303 --------------klpGh~gsvn~~~Fh-p~----e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  303 --------------KLPGHYGSVNEVDFH-PT----EPIILSCSSDKTIYLGE  336 (338)
T ss_pred             --------------EcCCcceeEEEeeec-CC----CcEEEEeccCceeEeec
Confidence                          347999999999954 44    48999999999998744

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-40  Score=267.09  Aligned_cols=295  Identities=17%  Similarity=0.286  Sum_probs=243.6

Q ss_pred             ceeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceE--EEEEec------c----CCCceEEEEEcCCCCEEEE
Q 016982            5 AVHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWE--KLHVLQ------K----HDQIVSGIDWSVRSNRIVT   71 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~--~~~~~~------~----~~~~v~~~~~~~~~~~l~~   71 (379)
                      .+..|..+|.+++|+|-.. .+++|+.|-..++|++......  ....|+      +    ....|++++|+.+|..||+
T Consensus       173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~Lat  252 (524)
T KOG0273|consen  173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLAT  252 (524)
T ss_pred             eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEE
Confidence            3455999999999999665 8999999999999999752111  111111      1    2357999999999999999


Q ss_pred             EeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982           72 VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        72 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  151 (379)
                      |+.||.+++|+..... ...  +..|+++|.++.|+..|++|++++.|+++.+||..++.   ..+.+ .-|..+-.++.
T Consensus       253 G~~~G~~riw~~~G~l-~~t--l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~---~~q~f-~~~s~~~lDVd  325 (524)
T KOG0273|consen  253 GSEDGEARIWNKDGNL-IST--LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT---VKQQF-EFHSAPALDVD  325 (524)
T ss_pred             eecCcEEEEEecCchh-hhh--hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce---EEEee-eeccCCccceE
Confidence            9999999999987654 333  36799999999999999999999999999999998887   45555 66777778889


Q ss_pred             EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982          152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~  231 (379)
                      |-. ...+++++.|+.|+|+.+                  ....++.++.+|.++|.++.|+|.|.+|++++.|++++||
T Consensus       326 W~~-~~~F~ts~td~~i~V~kv------------------~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW  386 (524)
T KOG0273|consen  326 WQS-NDEFATSSTDGCIHVCKV------------------GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW  386 (524)
T ss_pred             Eec-CceEeecCCCceEEEEEe------------------cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence            974 457899999999999987                  4567888999999999999999999999999999999999


Q ss_pred             ECCCCCceeeeeeeecCCeeeEEEecCCc----------EEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982          232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKM----------VIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS  301 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~----------~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
                      .+.... ....+..|...|..+.|+|+|.          ++.++.|..+++|+........                   
T Consensus       387 s~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~-------------------  446 (524)
T KOG0273|consen  387 SMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH-------------------  446 (524)
T ss_pred             ecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-------------------
Confidence            977655 4478889999999999999653          4458899999999866543211                   


Q ss_pred             CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                                                 .+..|..+|.+|+ |++++    +++|+|+.||.|.+|+.++++..+.+
T Consensus       447 ---------------------------~f~kH~~pVysva-fS~~g----~ylAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  447 ---------------------------TLMKHQEPVYSVA-FSPNG----RYLASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             ---------------------------eeccCCCceEEEE-ecCCC----cEEEecCCCCeeEeccccchheeEee
Confidence                                       2257999999999 88776    99999999999999999999887765

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.4e-40  Score=263.92  Aligned_cols=279  Identities=19%  Similarity=0.355  Sum_probs=242.4

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      ...|++++|+.+|.+||+|..||.++||+...   ..+.++..|.++|.++.|+..|++|++++.|+++.+||..+++..
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK  311 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence            36799999999999999999999999999887   488889999999999999999999999999999999999999877


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                      ..+.+  |..+..++.|-.+ ..+++++.|+.|+++.+....+   ...+ .+|.++|.++.|+|.+.+|++++.|++++
T Consensus       312 q~f~~--~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P---~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~Tlk  384 (524)
T KOG0273|consen  312 QQFEF--HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRP---VKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLK  384 (524)
T ss_pred             Eeeee--ccCCccceEEecC-ceEeecCCCceEEEEEecCCCc---ceee-ecccCceEEEEECCCCceEEEecCCCeeE
Confidence            77754  6666688889744 5689999999999999887773   5566 68999999999999999999999999999


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC---------CEEEEEcCCCeEEEEECCCCCcee
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG---------NTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---------~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      ||..                  ....+...+..|...|..+.|+|.|         ..+++++.|++|++||+..+.+ +
T Consensus       385 iWs~------------------~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~-i  445 (524)
T KOG0273|consen  385 IWSM------------------GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP-I  445 (524)
T ss_pred             eeec------------------CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-e
Confidence            9985                  5677788899999999999999964         5689999999999999999875 4


Q ss_pred             eeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCc
Q 016982          241 QNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVG  319 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
                      ..+..|..+|++++|+|+|+++| ++.|+.+.+|+......++..                                   
T Consensus       446 ~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~-----------------------------------  490 (524)
T KOG0273|consen  446 HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY-----------------------------------  490 (524)
T ss_pred             EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee-----------------------------------
Confidence            77888999999999999999999 567999999997765544431                                   


Q ss_pred             ccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          320 NDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       320 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                  .-.+.|..++ |+.+|    .+|..+-.||.+++-|++
T Consensus       491 ------------~~~~~Ifel~-Wn~~G----~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  491 ------------QGTGGIFELC-WNAAG----DKLGACASDGSVCVLDLR  523 (524)
T ss_pred             ------------cCCCeEEEEE-EcCCC----CEEEEEecCCCceEEEec
Confidence                        2345689999 77766    789999999999998875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-39  Score=244.05  Aligned_cols=259  Identities=16%  Similarity=0.191  Sum_probs=220.6

Q ss_pred             eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCcee---eeEEeecCCCceeEEEECCCCCEEEEEeCC
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWV---PTLVILRLNRAALCVQWSPKENKFAVGSGA  119 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (379)
                      .....++++|++.|+.++..+.+ +.+++++.|.++.+|++......   +...+.+|...|..+..+++|+++++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            35667899999999999998875 68899999999999998765321   233447899999999999999999999999


Q ss_pred             CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE
Q 016982          120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ  199 (379)
Q Consensus       120 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (379)
                      +.+++||+.+++   ..+.+ .+|...|.+++|+||++.+++|+.|.+|++|++                   .+.+..+
T Consensus        85 ~~lrlWDl~~g~---~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt-------------------~g~ck~t  141 (315)
T KOG0279|consen   85 GTLRLWDLATGE---STRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT-------------------LGVCKYT  141 (315)
T ss_pred             ceEEEEEecCCc---EEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeee-------------------cccEEEE
Confidence            999999999986   46666 899999999999999999999999999999996                   4677777


Q ss_pred             eecC--CcceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          200 LDLS--FSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       200 ~~~~--~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      +..+  ..+|.++.|+|+  ..++++++.|++|++||+++.+ +...+.+|.+-++.+++||||.+.+ ++.|+.+.+|+
T Consensus       142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence            7544  789999999997  7789999999999999998865 5578889999999999999999999 67899999999


Q ss_pred             ecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceE
Q 016982          275 ADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRF  354 (379)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l  354 (379)
                      +++.+....                                               .+|...|.+++ |+|..     +.
T Consensus       221 L~~~k~lys-----------------------------------------------l~a~~~v~sl~-fspnr-----yw  247 (315)
T KOG0279|consen  221 LNEGKNLYS-----------------------------------------------LEAFDIVNSLC-FSPNR-----YW  247 (315)
T ss_pred             ccCCceeEe-----------------------------------------------ccCCCeEeeEE-ecCCc-----ee
Confidence            987653211                                               35888999999 87763     55


Q ss_pred             EEeecCceEEEEeCCCccccccCCC
Q 016982          355 TTSGLDGKIVTWDLESQEDLLNYHL  379 (379)
Q Consensus       355 ~t~~~Dg~v~iW~~~~~~~~~~~~~  379 (379)
                      +.+..+-.|+|||+.++.++..|++
T Consensus       248 L~~at~~sIkIwdl~~~~~v~~l~~  272 (315)
T KOG0279|consen  248 LCAATATSIKIWDLESKAVVEELKL  272 (315)
T ss_pred             EeeccCCceEEEeccchhhhhhccc
Confidence            5566677799999999998887754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.7e-38  Score=265.74  Aligned_cols=286  Identities=22%  Similarity=0.323  Sum_probs=243.4

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|.++|++++|+|++++|++++.+|.|++|++.++  +....+..|...+..+.|+|++++|++++.++.|++|++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            356789999999999999999999999999999999887  466777889999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .+++....+  ..|...+.++.|+|+++++++++.++.+.+||++..+   ....+ ..|...+.+++|+|++.++++++
T Consensus        81 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200          81 ETGECVRTL--TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK---CLTTL-RGHTDWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             CcccceEEE--eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE---EEEEe-ccCCCcEEEEEEcCcCCEEEEEc
Confidence            987644444  5677899999999998888888889999999998665   34455 57888999999999999999888


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      .++.+++||+                  +.++.+..+..|...+.++.|+|+++.+++++.++.+++||+.... ....+
T Consensus       155 ~~~~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~  215 (289)
T cd00200         155 QDGTIKLWDL------------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGTL  215 (289)
T ss_pred             CCCcEEEEEc------------------cccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc-eecch
Confidence            8999999997                  4566677777888899999999999999999999999999998765 34666


Q ss_pred             eeecCCeeeEEEecCCcEEEEEe-CCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccc
Q 016982          244 AFRDLPLRDVLFVSEKMVIGVGF-DCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDA  322 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~~~~-d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (379)
                      ..|..++.++.|+|++.+++++. ++.+.+|+........                                        
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~----------------------------------------  255 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ----------------------------------------  255 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE----------------------------------------
Confidence            67788999999999988888776 9999999876432111                                        


Q ss_pred             cccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          323 VESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       323 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                            .+.+|...|.+++ +.+++    .+|++++.||.|++|+
T Consensus       256 ------~~~~~~~~i~~~~-~~~~~----~~l~~~~~d~~i~iw~  289 (289)
T cd00200         256 ------TLSGHTNSVTSLA-WSPDG----KRLASGSADGTIRIWD  289 (289)
T ss_pred             ------EccccCCcEEEEE-ECCCC----CEEEEecCCCeEEecC
Confidence                  1236888999999 66555    8999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-39  Score=239.93  Aligned_cols=255  Identities=14%  Similarity=0.191  Sum_probs=220.2

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      +..-.+.|+.+...|+++.||+++. ..|++||+.+++..++.++.+|...|+++.|..+|+.+++|+.||+++|||++.
T Consensus        36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~  114 (311)
T KOG0315|consen   36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS  114 (311)
T ss_pred             EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence            3444789999999999999999976 699999999987779999999999999999999999999999999999999999


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ..+.+.+   .+..+|+++..+|+-..|++|..+|.|++||+....   ....+.......|.++...|||.+++.+...
T Consensus       115 ~~~qR~~---~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~---c~~~liPe~~~~i~sl~v~~dgsml~a~nnk  188 (311)
T KOG0315|consen  115 LSCQRNY---QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS---CTHELIPEDDTSIQSLTVMPDGSMLAAANNK  188 (311)
T ss_pred             cccchhc---cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc---cccccCCCCCcceeeEEEcCCCcEEEEecCC
Confidence            7654444   567999999999999999999999999999998875   2333325566789999999999999999999


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      |.+++|++-.     .+.       ...-+++..++.|.+.+....+|||+++|++++.|.+++||+..+.-.....+++
T Consensus       189 G~cyvW~l~~-----~~~-------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g  256 (311)
T KOG0315|consen  189 GNCYVWRLLN-----HQT-------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG  256 (311)
T ss_pred             ccEEEEEccC-----CCc-------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence            9999999732     111       1234566778999999999999999999999999999999998887445577888


Q ss_pred             ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          246 RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       246 ~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      |+..++.++||.||+||+ ++.|..+++|+....+
T Consensus       257 h~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  257 HQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             CCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            999999999999999998 6788899999987654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-38  Score=270.53  Aligned_cols=312  Identities=18%  Similarity=0.197  Sum_probs=256.3

Q ss_pred             CcceeEEEeCCCCcEEEEEecC-CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSPDHAMVAFCPNN-NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~d-g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      ..+|..++|+..|..||.|+.. |.+.+|+....  ..+...++|...+++++++|||++|++|+.||+|+|||..++-|
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC  384 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC  384 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEeecc--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence            4689999999999999999764 89999999987  67778899999999999999999999999999999999999987


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC-e
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG-K  167 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-~  167 (379)
                      ..++  ..|+..|+.+.|+..|+.+++.+-||+|+.||+....+   .+.+....+-...|++..|.|..+..|+.|. .
T Consensus       385 ~vTF--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~QfscvavD~sGelV~AG~~d~F~  459 (893)
T KOG0291|consen  385 FVTF--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFE  459 (893)
T ss_pred             EEEe--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCceeeeEEEEcCCCCEEEeeccceEE
Confidence            6665  78999999999999999999999999999999988774   5555345566778999999999999888776 5


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD  247 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  247 (379)
                      |.+|++                  ++++.+-.+.+|.++|.+++|+|++..|+++|.|.+|++||+-.....+.++. +.
T Consensus       460 IfvWS~------------------qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~  520 (893)
T KOG0291|consen  460 IFVWSV------------------QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IR  520 (893)
T ss_pred             EEEEEe------------------ecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-ec
Confidence            999997                  89999999999999999999999999999999999999999987755556665 56


Q ss_pred             CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982          248 LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS  326 (379)
Q Consensus       248 ~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (379)
                      ..+..++|+|+|+-|+ +..||.+.+|+..+......+   +.......            .+.. .          +..
T Consensus       521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I---dgrkD~~~------------gR~~-~----------D~~  574 (893)
T KOG0291|consen  521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI---DGRKDLSG------------GRKE-T----------DRI  574 (893)
T ss_pred             cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc---cchhhccc------------cccc-c----------cee
Confidence            7899999999999888 678999999998765422111   11110000            0000 0          000


Q ss_pred             cccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccCC
Q 016982          327 RTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       327 ~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~~  378 (379)
                      .+.-.+.....+.++ ++.||    .+|++||....|++|++.++-.++++.
T Consensus       575 ta~~sa~~K~Ftti~-ySaDG----~~IlAgG~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  575 TAENSAKGKTFTTIC-YSADG----KCILAGGESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             ehhhcccCCceEEEE-EcCCC----CEEEecCCcccEEEEECchhheeeeEE
Confidence            011123456789999 88887    899999999999999999998888764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.1e-40  Score=269.58  Aligned_cols=288  Identities=16%  Similarity=0.236  Sum_probs=240.4

Q ss_pred             cceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      ..+.+|...|+++.|.| .+.+|++++.|+.|+||++... ..+++++.+|..+|.+++|+++|..+++++.|+.|++||
T Consensus       208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            46789999999999999 8899999999999999999873 389999999999999999999999999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      +++|++...+.   ....++++.|+|++ +.+++|+.|+.|+.||++.++   +.+.+ ..|-+.|..+.|-++|+++++
T Consensus       287 tETG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeY-d~hLg~i~~i~F~~~g~rFis  359 (503)
T KOG0282|consen  287 TETGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEY-DRHLGAILDITFVDEGRRFIS  359 (503)
T ss_pred             cccceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHH-HhhhhheeeeEEccCCceEee
Confidence            99999777764   36788999999988 899999999999999999988   55666 788899999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc--
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP--  238 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~--  238 (379)
                      .+.|+.++||+.                  .....++.+ ..+.....++..+|++.+++.-+.|+.|.++.+...-+  
T Consensus       360 sSDdks~riWe~------------------~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n  421 (503)
T KOG0282|consen  360 SSDDKSVRIWEN------------------RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN  421 (503)
T ss_pred             eccCccEEEEEc------------------CCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence            999999999985                  223333222 22233467899999999999999999999998654322  


Q ss_pred             eeeeeeeecC--CeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccc
Q 016982          239 LAQNVAFRDL--PLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSK  315 (379)
Q Consensus       239 ~~~~~~~~~~--~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (379)
                      ..+.+.+|..  --..+.|||||++|+ +..||.+.+|+.+......                                 
T Consensus       422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~---------------------------------  468 (503)
T KOG0282|consen  422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS---------------------------------  468 (503)
T ss_pred             HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh---------------------------------
Confidence            2245566643  356789999999999 5578999999955443222                                 


Q ss_pred             ccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          316 YGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       316 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                   .+.+|.+.+..+.|++...    ..+||||.||.|++|+
T Consensus       469 -------------~lkah~~~ci~v~wHP~e~----Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  469 -------------KLKAHDQPCIGVDWHPVEP----SKVATCGWDGLIKIWD  503 (503)
T ss_pred             -------------ccccCCcceEEEEecCCCc----ceeEecccCceeEecC
Confidence                         3368999999999776655    7999999999999997

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-39  Score=257.12  Aligned_cols=293  Identities=15%  Similarity=0.172  Sum_probs=237.1

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC-ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      ..++.|.+.|.-+.||++|++||+++.|.+..||++... ..+...++.+|..+|..+.||||.++|++|+.|..+.+||
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence            346789999999999999999999999999999998653 3677899999999999999999999999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +.++.....+. .++...+.+++|.|||..+++|+.|+.+..||++...    ...-.......|.+++..+||+++++.
T Consensus       298 v~tgd~~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~----~~~W~gvr~~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  298 VDTGDLRHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI----LGNWEGVRDPKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             CCcchhhhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch----hhcccccccceeEEEEEcCCCcEEEEE
Confidence            99998665553 3356789999999999999999999999999998765    122212233568999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      +.|..+++++.                  .+......+ ....+|+++..|.+++++++.-.+..+++||+.... +++.
T Consensus       373 ~~d~~i~l~~~------------------e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~-lv~k  432 (519)
T KOG0293|consen  373 TVDKKIRLYNR------------------EARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK-LVRK  432 (519)
T ss_pred             ecccceeeech------------------hhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh-HHHH
Confidence            99999999986                  222222222 225679999999999999999999999999999655 5567


Q ss_pred             eeeecCC--eeeEEEec-CCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          243 VAFRDLP--LRDVLFVS-EKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       243 ~~~~~~~--i~~~~~s~-~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      +.+|...  +..-+|.- +..+++ ++.|+.++||....+....                                    
T Consensus       433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~------------------------------------  476 (519)
T KOG0293|consen  433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA------------------------------------  476 (519)
T ss_pred             hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE------------------------------------
Confidence            7777543  44556654 457888 5578899999876654322                                    


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                .+.||...|++|+ ++|.. |  ..|||||+||+||||.....
T Consensus       477 ----------~LsGHs~~vNcVs-wNP~~-p--~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  477 ----------VLSGHSKTVNCVS-WNPAD-P--EMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             ----------eecCCcceeeEEe-cCCCC-H--HHhhccCCCCeEEEecCCcc
Confidence                      4479999999999 55543 2  89999999999999988653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-39  Score=278.25  Aligned_cols=207  Identities=21%  Similarity=0.330  Sum_probs=194.7

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .++.+|.++|+.+.|+|+.++|++++.|++|++|.+.+.  ..+-.+.+|..||..+.|+|.|-++||++.|++-++|..
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            358999999999999999999999999999999999986  788888899999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ......+.+  .+|-+.|.|+.|+|+.+++++|+.|.+|++||..++.   ..+.+ .+|.++|.+++|+|+|++|++|+
T Consensus       523 d~~~PlRif--aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~---~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~  596 (707)
T KOG0263|consen  523 DHNKPLRIF--AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN---SVRIF-TGHKGPVTALAFSPCGRYLASGD  596 (707)
T ss_pred             ccCCchhhh--cccccccceEEECCcccccccCCCCceEEEEEcCCCc---EEEEe-cCCCCceEEEEEcCCCceEeecc
Confidence            888766665  7899999999999999999999999999999999998   56777 99999999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      .|+.|++||+                  ..+..+..+.+|.+.|.++.|+.+|..||+++.|.+|++||+...
T Consensus       597 ed~~I~iWDl------------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  597 EDGLIKIWDL------------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCcEEEEEc------------------CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999997                  778999999999999999999999999999999999999997653

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5.4e-38  Score=245.52  Aligned_cols=307  Identities=13%  Similarity=0.100  Sum_probs=244.7

Q ss_pred             cccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982            2 AAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         2 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      +...+..|.+.|.+++.+|+.+++|+|+.|..-.+|++.++  +....+.+|...|+++.|+.+|.+||||+.+|.|+||
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            56678999999999999999999999999999999999998  5888899999999999999999999999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ...++.....+  ...-..+.=+.|+|.+..|+.|+.||.+-+|.+....   ..+.+ .+|..++++=.|.|+|+.+++
T Consensus       134 ~~stg~~~~~~--~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---~~kv~-~Gh~~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  134 KVSTGGEQWKL--DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---LCKVM-SGHNSPCTCGEFIPDGKRILT  207 (399)
T ss_pred             EcccCceEEEe--ecccCceEEEEecccccEEEeecCCCcEEEEECCCcc---eeeEe-cCCCCCcccccccCCCceEEE
Confidence            99999755544  3455778889999999999999999999999998864   46777 899999999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccc-----cCCCcc--------------------CCcccceEEEee--------cCCcceE
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEK-----KEGTSS--------------------DTKFGEQILQLD--------LSFSWAF  208 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~-----~~~~~~--------------------~~~~~~~~~~~~--------~~~~~v~  208 (379)
                      +..||+|++||++......+..     ..+...                    ...+++.+....        .+...+.
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence            9999999999987543222221     000000                    011222222222        1222233


Q ss_pred             EEEECC---CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEE
Q 016982          209 GVKWSP---SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIK  285 (379)
Q Consensus       209 ~~~~sp---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~  285 (379)
                      ++.+.|   .-.+.|+|+-||+|.|||+.....  +..-.|..+|..+.|.++..+++++.++.++.|+...+.+..   
T Consensus       288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~---  362 (399)
T KOG0296|consen  288 SVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKF---  362 (399)
T ss_pred             hhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEE---
Confidence            444444   456778899999999999887652  444568889999999996667779999999999977654211   


Q ss_pred             EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEE
Q 016982          286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVT  365 (379)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~i  365 (379)
                                                                 .+.||...|.+++ .+++.    ++++|+|.|++.+|
T Consensus       363 -------------------------------------------~y~GH~~~Il~f~-ls~~~----~~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  363 -------------------------------------------TYTGHQMGILDFA-LSPQK----RLVVTVSDDNTALV  394 (399)
T ss_pred             -------------------------------------------EEecCchheeEEE-EcCCC----cEEEEecCCCeEEE
Confidence                                                       2369999999999 77665    99999999999999


Q ss_pred             EeCC
Q 016982          366 WDLE  369 (379)
Q Consensus       366 W~~~  369 (379)
                      +++.
T Consensus       395 F~v~  398 (399)
T KOG0296|consen  395 FEVP  398 (399)
T ss_pred             EecC
Confidence            9874

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.2e-38  Score=274.82  Aligned_cols=284  Identities=21%  Similarity=0.275  Sum_probs=236.5

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-CCce
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE-GSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~   88 (379)
                      ...|+++.|+|+|+.+++++.++.+++|+..+.+......+.+|...|.+++|+|+++++++++.|++|++||+. .+..
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~  238 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN  238 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence            789999999999999999999999999999665212667778999999999999999999999999999999994 4454


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                      ...+  .+|...|++++|+|+++.+++|+.|++|++||++++.   +.+.+ .+|.+.|.+++|++++++|++++.|+.|
T Consensus       239 ~~~l--~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i  312 (456)
T KOG0266|consen  239 LKTL--KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---CVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTI  312 (456)
T ss_pred             EEEe--cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe---EEEee-eccCCceEEEEECCCCCEEEEcCCCccE
Confidence            4544  6899999999999999999999999999999999976   57777 8999999999999999999999999999


Q ss_pred             EEEeccccccccccccCCCccCCcccc--eEEEeecCCc--ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      ++||+                  .++.  ++..+..+..  +++.+.|+|++.+++++..|+.+++||+...... ....
T Consensus       313 ~vwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-~~~~  373 (456)
T KOG0266|consen  313 RVWDL------------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-GTYT  373 (456)
T ss_pred             EEEEC------------------CCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-eeec
Confidence            99997                  4555  4566655544  4999999999999999999999999999987643 5666


Q ss_pred             eecC---CeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982          245 FRDL---PLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN  320 (379)
Q Consensus       245 ~~~~---~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
                      +|..   .+.+...++.++++. ++.|+.+.+|+........                                      
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~--------------------------------------  415 (456)
T KOG0266|consen  374 GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQ--------------------------------------  415 (456)
T ss_pred             ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhh--------------------------------------
Confidence            6655   344555677888887 6678899999876532111                                      


Q ss_pred             ccccccccccccc-ccceeeeeeecccCCcccceEEEee--cCceEEEEeCC
Q 016982          321 DAVESSRTRGGTH-VNCINCIVPLREAGSSRITRFTTSG--LDGKIVTWDLE  369 (379)
Q Consensus       321 ~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~v~iW~~~  369 (379)
                              .+.+| ...|..+. +.+..    +++++++  .|+.+++|...
T Consensus       416 --------~l~~h~~~~~~~~~-~~~~~----~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  416 --------RLEGHSKAAVSDLS-SHPTE----NLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             --------hhcCCCCCceeccc-cCCCc----CeeeecCcCCCceEEEecCC
Confidence                    23578 77888888 54443    8999998  79999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2e-37  Score=235.48  Aligned_cols=261  Identities=18%  Similarity=0.201  Sum_probs=223.7

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      +..++|++|.+.|.++.|++|.++|++++.||.+.|||.-+...+..+.  -....|..++|+|.|+++|+|+-|+...|
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe--cCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            4558899999999999999999999999999999999998876555443  35688999999999999999999999999


Q ss_pred             EEeecCCc---eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          125 CYYEQENN---WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       125 ~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      |++.+...   ..+.+.+ .+|.+.+.|+.|-+ +..|+|++.|.++.+||+                  ++++.+..|.
T Consensus       124 y~ls~~d~~g~~~v~r~l-~gHtgylScC~f~d-D~~ilT~SGD~TCalWDi------------------e~g~~~~~f~  183 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLD-DNHILTGSGDMTCALWDI------------------ETGQQTQVFH  183 (343)
T ss_pred             Eecccccccccceeeeee-cCccceeEEEEEcC-CCceEecCCCceEEEEEc------------------ccceEEEEec
Confidence            99986632   2345566 89999999999987 567899999999999998                  8899999999


Q ss_pred             cCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          202 LSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       202 ~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      +|.+.|.+++++| +++.+++|+.|+..++||++.+. +.+.+.+|...|+++.|.|+|.-++ ++.|+..++|++....
T Consensus       184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence            9999999999999 99999999999999999999985 6799999999999999999999888 5567789999988765


Q ss_pred             cEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeec
Q 016982          280 IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGL  359 (379)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~  359 (379)
                      ...+..                                            ...-..+|++++ |+..|    ++|..|..
T Consensus       263 ~~a~ys--------------------------------------------~~~~~~gitSv~-FS~SG----RlLfagy~  293 (343)
T KOG0286|consen  263 ELAVYS--------------------------------------------HDSIICGITSVA-FSKSG----RLLFAGYD  293 (343)
T ss_pred             EEeeec--------------------------------------------cCcccCCceeEE-Ecccc----cEEEeeec
Confidence            333211                                            012344799999 88877    99999999


Q ss_pred             CceEEEEeCCCccccccC
Q 016982          360 DGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       360 Dg~v~iW~~~~~~~~~~~  377 (379)
                      |..+.+||.-.++....|
T Consensus       294 d~~c~vWDtlk~e~vg~L  311 (343)
T KOG0286|consen  294 DFTCNVWDTLKGERVGVL  311 (343)
T ss_pred             CCceeEeeccccceEEEe
Confidence            999999999887765443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-38  Score=244.64  Aligned_cols=295  Identities=13%  Similarity=0.157  Sum_probs=237.2

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC----------------CceEEEEEeccCCCceEEEEEcCCCCE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ----------------EKWEKLHVLQKHDQIVSGIDWSVRSNR   68 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~   68 (379)
                      .+..|++++.+.+|||||.++|+|+.|..|+|.|++.                .....++++..|..+|+++.|+|....
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            3577999999999999999999999999999999861                013567889999999999999999999


Q ss_pred             EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           69 IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        69 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      |++++.|++|+++|+.....++.+.......+|.+++|+|.|.+|++|.....+++||+++-+......+- ..|.+.|+
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd-~qht~ai~  265 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD-DQHTGAIT  265 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc-ccccccee
Confidence            99999999999999987655555554556789999999999999999999999999999987643323332 68999999


Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cCC-cceEEEEECCCCCEEEEEcCCC
Q 016982          149 SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSF-SWAFGVKWSPSGNTLAYVGHNS  226 (379)
Q Consensus       149 ~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~~sp~~~~l~~~~~d~  226 (379)
                      ++.+++.+++.++++.||.|++||-                  -+++|+.++. .|. ..|.+..|..+|+++++.+.|.
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDG------------------VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS  327 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDG------------------VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS  327 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeecc------------------ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence            9999999999999999999999994                  6778888873 443 4799999999999999999999


Q ss_pred             eEEEEECCCCCceeeeeeeec-----CCeeeEEEecCCcEEEEEeC--CCeEEEEecCCCcEEEEEEecccccCCCCCcc
Q 016982          227 MIYFVDDVGPSPLAQNVAFRD-----LPLRDVLFVSEKMVIGVGFD--CNPMVFAADETGIWTFIKFLDERKTSSSGPKY  299 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~d--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (379)
                      .+++|.+.++..+ +...+.+     .--+...|.....++..-.+  +.+.-|+..+.....+                
T Consensus       328 ~vkLWEi~t~R~l-~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l----------------  390 (430)
T KOG0640|consen  328 TVKLWEISTGRML-KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL----------------  390 (430)
T ss_pred             eeeeeeecCCceE-EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh----------------
Confidence            9999999998754 5554432     11344567766666664333  3455555443321111                


Q ss_pred             CCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          300 GSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                                   ...||.+.+..+. ++|.+    .-|+|||.|.++|+|--+
T Consensus       391 -----------------------------~slgHn~a~R~i~-HSP~~----p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  391 -----------------------------LSLGHNGAVRWIV-HSPVE----PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             -----------------------------cccCCCCCceEEE-eCCCC----Cceeeecccceeeeeeec
Confidence                                         1158999999999 98776    899999999999999754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-36  Score=256.94  Aligned_cols=332  Identities=14%  Similarity=0.155  Sum_probs=263.2

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .+..+|-+.|+++.|+.|.++|++|+.|-.+++|.++..+.-....+.+|.++|-++-|..+...+++.+.||.+.+|..
T Consensus       139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~  218 (893)
T KOG0291|consen  139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC  218 (893)
T ss_pred             eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence            34678899999999999999999999999999999987644557889999999999999999999999999999999987


Q ss_pred             cC------------------------Cc------e--eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982           84 EG------------------------SE------W--VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN  131 (379)
Q Consensus        84 ~~------------------------~~------~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~  131 (379)
                      ..                        .+      +  .....+......+++.+|++..+.|+++-..|...+|.+..-.
T Consensus       219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~  298 (893)
T KOG0291|consen  219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN  298 (893)
T ss_pred             cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence            61                        11      0  0011122233789999999999999999999999999887765


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEE
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGV  210 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  210 (379)
                         +...+ .-...+|..++|+..|.+|+.|+.. |.+.||+-                  ++...+...++|...++++
T Consensus       299 ---lih~L-Sis~~~I~t~~~N~tGDWiA~g~~klgQLlVweW------------------qsEsYVlKQQgH~~~i~~l  356 (893)
T KOG0291|consen  299 ---LIHSL-SISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW------------------QSESYVLKQQGHSDRITSL  356 (893)
T ss_pred             ---EEEEe-ecccceeeEEEecccCCEEEEcCCccceEEEEEe------------------eccceeeeccccccceeeE
Confidence               55555 5556789999999999999998864 89999985                  6677788889999999999


Q ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecc
Q 016982          211 KWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDE  289 (379)
Q Consensus       211 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~  289 (379)
                      +++|||+++++|+.||.|+|||...+. +..++..|...|+.+.|+..|+.+. ++-||+++.|++.....++....+..
T Consensus       357 ~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p  435 (893)
T KOG0291|consen  357 AYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP  435 (893)
T ss_pred             EECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence            999999999999999999999998877 6688899999999999999998776 78899999999887654443332222


Q ss_pred             cccC-----CCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982          290 RKTS-----SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV  364 (379)
Q Consensus       290 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~  364 (379)
                      .+..     ..+...-.+....+..|.|.-+.|.       ...++.||+++|.+++ |++++    ..|||+|+|.+||
T Consensus       436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-------llDiLsGHEgPVs~l~-f~~~~----~~LaS~SWDkTVR  503 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-------LLDILSGHEGPVSGLS-FSPDG----SLLASGSWDKTVR  503 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-------eeehhcCCCCcceeeE-Ecccc----CeEEeccccceEE
Confidence            2111     1111111122234445554444443       3337799999999999 88776    8999999999999


Q ss_pred             EEeCCC
Q 016982          365 TWDLES  370 (379)
Q Consensus       365 iW~~~~  370 (379)
                      +||+-+
T Consensus       504 iW~if~  509 (893)
T KOG0291|consen  504 IWDIFS  509 (893)
T ss_pred             EEEeec
Confidence            999965

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.8e-36  Score=282.23  Aligned_cols=299  Identities=13%  Similarity=0.106  Sum_probs=231.2

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc------eEEEEEeccCCCceEEEEEcCC-CCEEEEEeCCCe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK------WEKLHVLQKHDQIVSGIDWSVR-SNRIVTVSHDRN   77 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~   77 (379)
                      .+..|.+.|++++|+|+|++||+|+.|+.|+||+.....      ..+...+. +...+.+++|+|. +.+|++++.|++
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            355689999999999999999999999999999975310      01222333 3457899999875 689999999999


Q ss_pred             EEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc-CC
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH-PN  155 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~  155 (379)
                      |++||+.+++....+  ..|...|++++|+| ++.+|++|+.|+.|++||++.+.   ....+ . +...+.++.|+ ++
T Consensus       557 v~lWd~~~~~~~~~~--~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~---~~~~~-~-~~~~v~~v~~~~~~  629 (793)
T PLN00181        557 VQVWDVARSQLVTEM--KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV---SIGTI-K-TKANICCVQFPSES  629 (793)
T ss_pred             EEEEECCCCeEEEEe--cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc---EEEEE-e-cCCCeEEEEEeCCC
Confidence            999999988755544  67999999999997 78999999999999999998776   34444 3 34678999995 46


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      +.+|++|+.|+.|++||+.                 .....+..+.+|...|.++.|. ++.+|++++.|+.|++||+..
T Consensus       630 g~~latgs~dg~I~iwD~~-----------------~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        630 GRSLAFGSADHKVYYYDLR-----------------NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCEEEEEeCCCeEEEEECC-----------------CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            8999999999999999972                 2223456777899999999997 678999999999999999875


Q ss_pred             C-----CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC-cEEEEEEecccccCCCCCccCCCcccccc
Q 016982          236 P-----SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG-IWTFIKFLDERKTSSSGPKYGSQFSEAFG  308 (379)
Q Consensus       236 ~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (379)
                      .     ...+..+.+|...+..++|++++.+|+ ++.|+.+.+|+..... .+....  .... ..              
T Consensus       692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~--~~~~-~~--------------  754 (793)
T PLN00181        692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF--KTID-PV--------------  754 (793)
T ss_pred             CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec--ccCC-cc--------------
Confidence            3     234577888989999999999999888 5578999999865432 111100  0000 00              


Q ss_pred             eeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          309 KLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                                       .......|...|.+++ |++++    .+|++|+.||.|+||++
T Consensus       755 -----------------~~~~~~~~~~~V~~v~-ws~~~----~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        755 -----------------SGLEVDDASQFISSVC-WRGQS----STLVAANSTGNIKILEM  792 (793)
T ss_pred             -----------------cccccCCCCcEEEEEE-EcCCC----CeEEEecCCCcEEEEec
Confidence                             0001134677899999 66665    89999999999999997

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.8e-39  Score=251.56  Aligned_cols=283  Identities=17%  Similarity=0.222  Sum_probs=236.4

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      ...|+|+.+.  ...+++|..|++|+|||..+-  .+...+.+|++.|.|+.|.  .+.|++|+.|.+|++||+++++++
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence            4679999984  567999999999999998875  7889999999999999996  569999999999999999999977


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                      ..+  ..|...|..+.|+  ..++++++.|.++.+||+.......+.+.+ .+|...|+.+.|  +.+++++++.|.+|+
T Consensus       271 ~tl--ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVL-vGHrAaVNvVdf--d~kyIVsASgDRTik  343 (499)
T KOG0281|consen  271 NTL--IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIK  343 (499)
T ss_pred             hHH--hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHH-hhhhhheeeecc--ccceEEEecCCceEE
Confidence            766  6799999999998  569999999999999999887644444555 899999999999  567999999999999


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCC
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLP  249 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  249 (379)
                      +|++                  .+.+.+.++.+|...|.++.+.  ++++++|+.|.+|++||+..+. +++.+++|+.-
T Consensus       344 vW~~------------------st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~-cLRvLeGHEeL  402 (499)
T KOG0281|consen  344 VWST------------------STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEEL  402 (499)
T ss_pred             EEec------------------cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccH-HHHHHhchHHh
Confidence            9997                  7899999999999999998875  8999999999999999999887 56899999999


Q ss_pred             eeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccc
Q 016982          250 LRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTR  329 (379)
Q Consensus       250 i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (379)
                      |.++.|. +.+++.+++||++++|++...-        ++.....           .+.                  ...
T Consensus       403 vRciRFd-~krIVSGaYDGkikvWdl~aal--------dpra~~~-----------~~C------------------l~~  444 (499)
T KOG0281|consen  403 VRCIRFD-NKRIVSGAYDGKIKVWDLQAAL--------DPRAPAS-----------TLC------------------LRT  444 (499)
T ss_pred             hhheeec-CceeeeccccceEEEEeccccc--------CCccccc-----------chH------------------HHh
Confidence            9999995 3456668999999998865421        1110000           000                  013


Q ss_pred             ccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          330 GGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       330 ~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                      +..|++.|..+. |.      ...+++++.|-+|.|||+.++
T Consensus       445 lv~hsgRVFrLQ-FD------~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  445 LVEHSGRVFRLQ-FD------EFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             hhhccceeEEEe-ec------ceEEEeccCCCeEEEEEcCCC
Confidence            356999999998 53      268999999999999999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=227.80  Aligned_cols=306  Identities=17%  Similarity=0.216  Sum_probs=241.8

Q ss_pred             CcccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982            1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus         1 m~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      |.+..+++|+.+++-+.++.+|.+|++++.|....+|-..++  +.+-++.+|.+.|.++..+-+.+++++|+.|.++++
T Consensus         1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            667789999999999999999999999999999999988777  899999999999999999999999999999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCeEEEEEeecCC----ceeEEEEEeecCCcCEEEEE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-----AKTVCICYYEQEN----NWWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~----~~~~~~~~~~~~~~~v~~~~  151 (379)
                      ||+++++.+..+.   ...+|..+.|+++|++++.+..     .+.|.++|++...    .......+ ..+...++.+-
T Consensus        79 WDv~tGk~la~~k---~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI-~t~~skit~a~  154 (327)
T KOG0643|consen   79 WDVETGKQLATWK---TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI-PTPDSKITSAL  154 (327)
T ss_pred             EEcCCCcEEEEee---cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-cCCccceeeee
Confidence            9999999666653   5789999999999998888765     4678999988443    11112233 46678899999


Q ss_pred             EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc-ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEE
Q 016982          152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG-EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF  230 (379)
Q Consensus       152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v  230 (379)
                      |.|-++.|++|.++|.|.+||+                  +++ +.+...+.|...|+.+.++||..++++++.|.+-++
T Consensus       155 Wg~l~~~ii~Ghe~G~is~~da------------------~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl  216 (327)
T KOG0643|consen  155 WGPLGETIIAGHEDGSISIYDA------------------RTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL  216 (327)
T ss_pred             ecccCCEEEEecCCCcEEEEEc------------------ccCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence            9999999999999999999997                  554 555666888899999999999999999999999999


Q ss_pred             EECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecC--CCcEEEEEEecccccCCCCCccCCCcccccc
Q 016982          231 VDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE--TGIWTFIKFLDERKTSSSGPKYGSQFSEAFG  308 (379)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (379)
                      ||+.+-. +++++. ...||++.+++|....++.+.....+=.....  .+.++                         .
T Consensus       217 ~D~~tl~-v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFE-------------------------A  269 (327)
T KOG0643|consen  217 VDVRTLE-VLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFE-------------------------A  269 (327)
T ss_pred             eecccee-eEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchh-------------------------h
Confidence            9998865 445554 47899999999976666643322221111100  01000                         1


Q ss_pred             eeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          309 KLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      +|+        ....++.-...+||-++|++|+ |.|+|    .-.+|||+||.||+.-+..
T Consensus       270 rFy--------h~i~eEEigrvkGHFGPINsvA-fhPdG----ksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  270 RFY--------HLIFEEEIGRVKGHFGPINSVA-FHPDG----KSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             hHH--------HHHHHHHhccccccccCcceeE-ECCCC----cccccCCCCceEEEEEecc
Confidence            111        0111233335589999999999 66665    8999999999999987765

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-36  Score=227.90  Aligned_cols=242  Identities=20%  Similarity=0.353  Sum_probs=207.6

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC-
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS-   86 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-   86 (379)
                      +|+..|..++|+|.|++||+|+.|.++.||.-..++++++.++++|...|.+++|+++|++||+++.|+.|-+|.+..+ 
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            5889999999999999999999999999999999999999999999999999999999999999999999999998744 


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                      +....-.+.+|...|..+.|+|...+|++++.|.+|++|.-.....|.+...+ .+|...|.+++|+|.|..|++++.|+
T Consensus       139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~  217 (312)
T KOG0645|consen  139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDG  217 (312)
T ss_pred             cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCc
Confidence            34444455889999999999999999999999999999988767778888888 89999999999999999999999999


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--c----e
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS--P----L  239 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~--~----~  239 (379)
                      +++||..                  .     ..+ ..|...+..+.|.  ...|++++.|+.|++|......  +    +
T Consensus       218 tv~Iw~~------------------~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~  272 (312)
T KOG0645|consen  218 TVSIWRL------------------Y-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL  272 (312)
T ss_pred             ceEeeee------------------c-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH
Confidence            9999964                  1     111 2356778899998  4579999999999999754321  1    1


Q ss_pred             eeeeeeecCCeeeEEEec--CCcEEEEEeCCCeEEEEe
Q 016982          240 AQNVAFRDLPLRDVLFVS--EKMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~--~~~~l~~~~d~~~~i~~~  275 (379)
                      ...-..|+..|+++.|.|  .++++.++.||.+++|.+
T Consensus       273 ~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  273 AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence            123346888999999999  456666888999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-37  Score=260.53  Aligned_cols=293  Identities=16%  Similarity=0.154  Sum_probs=245.3

Q ss_pred             ceeccCcceeEEEe-CCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            5 AVHQFAQCITCHAW-SPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         5 ~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .+.+..+.|..++| .|+.++||++++.+.+++|++.+.   .-..+.+|+..|.++....+|.+|+||+.|.++++|.+
T Consensus       318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~  394 (775)
T KOG0319|consen  318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL  394 (775)
T ss_pred             hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC---ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence            45677889999988 578899999999999999998886   23388999999999996677889999999999999988


Q ss_pred             cCCc--eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEE-----EeecCCcCEEEEEEcCC
Q 016982           84 EGSE--WVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKL-----IRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        84 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~  155 (379)
                      +.+.  ........+|...|.+++++..+ .+|++++.|+++++|++...++......     ....|...|++++.+|+
T Consensus       395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n  474 (775)
T KOG0319|consen  395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN  474 (775)
T ss_pred             cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence            5442  22223346799999999997744 6899999999999999987332111111     12579999999999999


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      .++++||+.|.+.+||++                  +.......+.+|...|+++.|+|..+.++++|.|++|+||.+.+
T Consensus       475 dkLiAT~SqDktaKiW~l------------------e~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~  536 (775)
T KOG0319|consen  475 DKLIATGSQDKTAKIWDL------------------EQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST  536 (775)
T ss_pred             CceEEecccccceeeecc------------------cCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence            999999999999999997                  56788899999999999999999999999999999999999998


Q ss_pred             CCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccc
Q 016982          236 PSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQS  314 (379)
Q Consensus       236 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (379)
                      .. +++++.+|...|..+.|-.+|+.|+ ++.||-+++|+.....+..                                
T Consensus       537 fS-ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~--------------------------------  583 (775)
T KOG0319|consen  537 FS-CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM--------------------------------  583 (775)
T ss_pred             ce-eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh--------------------------------
Confidence            76 6799999999999999999876555 8899999999987653222                                


Q ss_pred             cccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          315 KYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                    .+.+|.+.|++++ .++..    ..++|||.||.|.+|.=.+
T Consensus       584 --------------tlD~H~DrvWaL~-~~~~~----~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  584 --------------TLDAHNDRVWALS-VSPLL----DMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             --------------hhhhccceeEEEe-ecCcc----ceeEecCCCeEEEEeecCc
Confidence                          3468999999999 66555    7999999999999997554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.6e-37  Score=242.42  Aligned_cols=257  Identities=18%  Similarity=0.187  Sum_probs=227.7

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEE
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVC  123 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  123 (379)
                      ++..+.+.+|.+.|.|+++.|.++++++++.|++++|||+.++++...+  .+|...|..+++++...++++++.|+.|+
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl--tGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL--TGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee--cchhheeeeeeecccCceEEEecCCCeeE
Confidence            5667788999999999999999999999999999999999999966555  78999999999999999999999999999


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      .||++.++   +.+.+ .+|-..|.|++.+|.-..|++|+.|..++|||+                  ++...+..+.+|
T Consensus       219 CwDLe~nk---vIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDi------------------Rtr~~V~~l~GH  276 (460)
T KOG0285|consen  219 CWDLEYNK---VIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI------------------RTRASVHVLSGH  276 (460)
T ss_pred             EEechhhh---hHHHh-ccccceeEEEeccccceeEEecCCcceEEEeee------------------cccceEEEecCC
Confidence            99999988   56776 899999999999999999999999999999997                  788899999999


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEE
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~  283 (379)
                      ..+|.++.+.|-...+++|+.|++|++||++.++.. ..+..|...+.+++.+|....+|+++.+.+.-|....+.... 
T Consensus       277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~-  354 (460)
T KOG0285|consen  277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ-  354 (460)
T ss_pred             CCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh-
Confidence            999999999997778999999999999999998854 777789999999999999999998888888877765432110 


Q ss_pred             EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceE
Q 016982          284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKI  363 (379)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v  363 (379)
                                                                   .+.+|...|++++ ...|+     ++++|++.|.+
T Consensus       355 ---------------------------------------------nlsgh~~iintl~-~nsD~-----v~~~G~dng~~  383 (460)
T KOG0285|consen  355 ---------------------------------------------NLSGHNAIINTLS-VNSDG-----VLVSGGDNGSI  383 (460)
T ss_pred             ---------------------------------------------ccccccceeeeee-eccCc-----eEEEcCCceEE
Confidence                                                         2368999999999 55554     89999999999


Q ss_pred             EEEeCCCccccccC
Q 016982          364 VTWDLESQEDLLNY  377 (379)
Q Consensus       364 ~iW~~~~~~~~~~~  377 (379)
                      .+||.+++-..|.+
T Consensus       384 ~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  384 MFWDWKSGHNYQRG  397 (460)
T ss_pred             EEEecCcCcccccc
Confidence            99999998776654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.1e-38  Score=252.76  Aligned_cols=245  Identities=15%  Similarity=0.238  Sum_probs=217.1

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .++.|.++|+++.|+++|.++++|..+|.|++|+..-+   .+..++.|. ..|++++|+|+...+++++.||+|+|||.
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf  209 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF  209 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence            45789999999999999999999999999999998764   445555554 89999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ...+....+  .+|.-.|.+++|+|...++++++.|..|++||.+++.   +...+ ..|...|..+.|+|++++|++++
T Consensus       210 ~~~kee~vL--~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~---cl~tl-h~HKntVl~~~f~~n~N~Llt~s  283 (464)
T KOG0284|consen  210 RMPKEERVL--RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS---CLATL-HGHKNTVLAVKFNPNGNWLLTGS  283 (464)
T ss_pred             cCCchhhee--ccCCCCcceeccCCccceeEEccCCceeEeecCCCcc---hhhhh-hhccceEEEEEEcCCCCeeEEcc
Confidence            887755555  7899999999999999999999999999999999988   45555 78999999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      .|..++++|+                  ++.+.+..+++|...++++.|+| ...+|.+|+.||.|..|.+...+++...
T Consensus       284 kD~~~kv~Di------------------R~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i  345 (464)
T KOG0284|consen  284 KDQSCKVFDI------------------RTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI  345 (464)
T ss_pred             CCceEEEEeh------------------hHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence            9999999998                  56777888999999999999999 6778889999999999998866666555


Q ss_pred             eeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982          243 VAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~  276 (379)
                      -.+|...|++++|+|=|.+|+ ++.|.++++|...
T Consensus       346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            667899999999999999999 5578889999754

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.2e-35  Score=240.40  Aligned_cols=293  Identities=20%  Similarity=0.301  Sum_probs=238.0

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC----CeEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD----RNSY   79 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~   79 (379)
                      ..+.+|..+++-..|||.|.++|+|...|+|+|||....+.-+..+++.-.++|..++|++++++|+..++.    |.+.
T Consensus        53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F  132 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF  132 (603)
T ss_pred             eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence            446789999999999999999999999999999999886666777788888999999999999999877643    3466


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      +||.  +.....  +.+|...|.++.|-|.. -.+++|++|++|.+|+=   .+......+ ..|..-|.|+.|+|||.+
T Consensus       133 ~~DS--G~SvGe--i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG---PPFKFk~s~-r~HskFV~~VRysPDG~~  204 (603)
T KOG0318|consen  133 LWDS--GNSVGE--ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEG---PPFKFKSSF-REHSKFVNCVRYSPDGSR  204 (603)
T ss_pred             EecC--CCccce--eeccceeEeeeeccCCCceEEEeccCCCeEEEeeC---CCeeeeecc-cccccceeeEEECCCCCe
Confidence            6664  443344  47899999999999954 47999999999998753   222234444 788999999999999999


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      +++.+.||++.+||-                  .+++.+..+.   +|.+.|.+++|+||+..+++++.|.+++|||+.+
T Consensus       205 Fat~gsDgki~iyDG------------------ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  205 FATAGSDGKIYIYDG------------------KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST  266 (603)
T ss_pred             EEEecCCccEEEEcC------------------CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence            999999999999994                  8899999987   8999999999999999999999999999999988


Q ss_pred             CCceeeeeeeec---CCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeec
Q 016982          236 PSPLAQNVAFRD---LPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYG  312 (379)
Q Consensus       236 ~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (379)
                      .+ +++++....   .....+.|. .+.++..+.+|.+.+++.+.....+                              
T Consensus       267 ~s-lv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~------------------------------  314 (603)
T KOG0318|consen  267 NS-LVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLK------------------------------  314 (603)
T ss_pred             cc-eEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhh------------------------------
Confidence            75 556655322   223456665 6678888889988887765432111                              


Q ss_pred             cccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccc
Q 016982          313 QSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLL  375 (379)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~  375 (379)
                                      .+.||...|+++. .++++    .+|.||+.||.|.-|+..++..-+
T Consensus       315 ----------------~i~GHnK~ITaLt-v~~d~----~~i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  315 ----------------VISGHNKSITALT-VSPDG----KTIYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             ----------------eecccccceeEEE-EcCCC----CEEEeeccCceEEEEecCCccccc
Confidence                            3369999999999 66665    899999999999999998876543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-35  Score=248.82  Aligned_cols=291  Identities=15%  Similarity=0.164  Sum_probs=244.3

Q ss_pred             ccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            3 AIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      ..++.+|...|.++++|.+...+++|+. +.+++|+..+.  ++++++..  +.+.+..|-|.++++++|...|.+.++|
T Consensus       366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~--kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL--KCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFD  440 (888)
T ss_pred             eeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc--ceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEE
Confidence            3567899999999999999888888754 79999999986  78888874  3889999999999999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc--eeEEEEEe------ecCCcCEEEEEEcC
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN--WWVSKLIR------KRHDSSVTSVAWHP  154 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~------~~~~~~v~~~~~~p  154 (379)
                      +.+...+..+  ..|.+.+++++.+||+..+++|+.|.+|++||+.....  ....+.+.      -.-...|.|++++|
T Consensus       441 laS~~l~Eti--~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  441 LASASLVETI--RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             eehhhhhhhh--hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence            9998866665  58999999999999999999999999999999864321  00111111      24467899999999


Q ss_pred             CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      |+++|+++--|.+++||-+                  .+-+-..++.+|.-+|.++..|||++++++||.|..|++|-+.
T Consensus       519 dgk~LaVsLLdnTVkVyfl------------------DtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  519 DGKLLAVSLLDNTVKVYFL------------------DTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             CCcEEEEEeccCeEEEEEe------------------cceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence            9999999999999999986                  5677778899999999999999999999999999999999887


Q ss_pred             CCCceeeeeeeecCCeeeEEEecCCcEE-EEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecc
Q 016982          235 GPSPLAQNVAFRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQ  313 (379)
Q Consensus       235 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
                      -+. +.+.+-+|+..|.++.|.|+..++ ++|.|+.++-|+...   +....                            
T Consensus       581 FGD-CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---Fe~iq----------------------------  628 (888)
T KOG0306|consen  581 FGD-CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---FEEIQ----------------------------  628 (888)
T ss_pred             cch-hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh---hhhhe----------------------------
Confidence            765 457888899999999999976644 588999999887432   11111                            


Q ss_pred             ccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          314 SKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                     .+.+|...|+|++ ..++|    .+++|+|.|.+||+|....
T Consensus       629 ---------------~L~~H~~ev~cLa-v~~~G----~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  629 ---------------KLDGHHSEVWCLA-VSPNG----SFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ---------------eeccchheeeeeE-EcCCC----CeEEeccCCceeEeeeccC
Confidence                           3468999999999 55554    8999999999999998755

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-36  Score=235.72  Aligned_cols=244  Identities=15%  Similarity=0.224  Sum_probs=221.4

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.+.|..++|+..|++||+++.|=.+++||..+. .+++..+.+|...|.++.|-|.|.+|++++.|.+|+.|++.
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~  223 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD  223 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence            57899999999999999999999999988999999875 46778888999999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC---------
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN---------  155 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------  155 (379)
                      ++.++..+  .+|...|.-++.+.||..+++++.|.++++|-+.+++   +...+ ..|..+|.+++|.|.         
T Consensus       224 tg~cv~t~--~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---~k~~l-R~hEh~vEci~wap~~~~~~i~~a  297 (406)
T KOG0295|consen  224 TGYCVKTF--PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---CKAEL-REHEHPVECIAWAPESSYPSISEA  297 (406)
T ss_pred             cceeEEec--cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---hhhhh-hccccceEEEEecccccCcchhhc
Confidence            99977766  7899999999999999999999999999999999886   34444 789999999999873         


Q ss_pred             ------CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982          156 ------NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY  229 (379)
Q Consensus       156 ------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~  229 (379)
                            ++++.+++.|++|++||+                  .++.++.++.+|..+|..++|+|.|+||+++..|++++
T Consensus       298 t~~~~~~~~l~s~SrDktIk~wdv------------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr  359 (406)
T KOG0295|consen  298 TGSTNGGQVLGSGSRDKTIKIWDV------------------STGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR  359 (406)
T ss_pred             cCCCCCccEEEeecccceEEEEec------------------cCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence                  258999999999999997                  88999999999999999999999999999999999999


Q ss_pred             EEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          230 FVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       230 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      +||+++.. +.+.+..|..-++++.|..+..+++ ++-|..+++|.
T Consensus       360 vwdl~~~~-cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  360 VWDLKNLQ-CMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEEeccce-eeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            99998876 5688889999999999999888877 55688888876

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-35  Score=220.84  Aligned_cols=283  Identities=16%  Similarity=0.250  Sum_probs=223.9

Q ss_pred             eeEEEeCC-CCcEEEEEe-------cCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982           13 ITCHAWSP-DHAMVAFCP-------NNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN   82 (379)
Q Consensus        13 i~~~~~s~-~~~~l~~~~-------~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~   82 (379)
                      =+++.||| -.++||++.       ..|++.|.++.. +.......+. -.+.+..++|+++. +.+++++.||++++||
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d   89 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFD   89 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEec
Confidence            36789999 234444432       368999999963 3344444444 35678999999975 6788999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLA  160 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~  160 (379)
                      +.... .+....++|+..|.++.|++ +...+++++.|++|++|+.+.++   ....+ .+|..-|...+|+|. .+.++
T Consensus        90 ~~~~s-~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---Sv~Tf-~gh~~~Iy~a~~sp~~~nlfa  164 (311)
T KOG0277|consen   90 LTMPS-KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---SVQTF-NGHNSCIYQAAFSPHIPNLFA  164 (311)
T ss_pred             cCCCC-cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc---ceEee-cCCccEEEEEecCCCCCCeEE
Confidence            65443 34455588999999999999 56678888999999999988777   35556 899999999999995 58999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCce
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +++.|+.+++||++                 ..++.+. +..|...+.++.|+. +.+.|++|+.|+.|++||+++-+..
T Consensus       165 s~Sgd~~l~lwdvr-----------------~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p  226 (311)
T KOG0277|consen  165 SASGDGTLRLWDVR-----------------SPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP  226 (311)
T ss_pred             EccCCceEEEEEec-----------------CCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc
Confidence            99999999999982                 4455544 889999999999998 6778999999999999999998888


Q ss_pred             eeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982          240 AQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG  317 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (379)
                      +..+.+|+..|..+.|||.. .+|+ +++|-++++|+.....  ...                       .         
T Consensus       227 l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~-----------------------e---------  272 (311)
T KOG0277|consen  227 LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAI-----------------------E---------  272 (311)
T ss_pred             ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhh-----------------------h---------
Confidence            88999999999999999964 4666 7899999999865321  000                       1         


Q ss_pred             CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                                 ...-|+.-|..+. ++.-.   +.++|++|.|+.++||+-
T Consensus       273 -----------~~~~HtEFv~g~D-ws~~~---~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 -----------TVDHHTEFVCGLD-WSLFD---PGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -----------hhhccceEEeccc-ccccc---Cceeeecccccceeeecc
Confidence                       1135888899999 54432   389999999999999983

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.8e-35  Score=229.70  Aligned_cols=287  Identities=15%  Similarity=0.156  Sum_probs=233.1

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC---CEEEEEeCCCeEEEEe
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS---NRIVTVSHDRNSYVWN   82 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~vw~   82 (379)
                      -+.|.+.|.++...  ++.+++|++||.+++||...   +...++.+|.++|.+++|.-..   ..+++++.|.++++|.
T Consensus       101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen  101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             cccchhhhhhhccc--CceEEEeecCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            35688889988887  68999999999999999987   5888899999999988885333   4699999999999999


Q ss_pred             ccCCceeeeE--EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc----------------------eeEEEE
Q 016982           83 QEGSEWVPTL--VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN----------------------WWVSKL  138 (379)
Q Consensus        83 ~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~----------------------~~~~~~  138 (379)
                      ++.++.....  ...+|...|.+++..++|..+++|+.|..|.+|+......                      ......
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            9877533222  2248999999999999999999999999999999332110                      011223


Q ss_pred             EeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCE
Q 016982          139 IRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT  218 (379)
Q Consensus       139 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  218 (379)
                      + .+|..+|.++.|++ ...+.+++.|.+|+.||+                  .++.++.++.. +..++++.++|..++
T Consensus       256 l-~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDl------------------etg~~~~~~~~-~ksl~~i~~~~~~~L  314 (423)
T KOG0313|consen  256 L-EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDL------------------ETGGLKSTLTT-NKSLNCISYSPLSKL  314 (423)
T ss_pred             e-cccccceeeEEEcC-CCceEeecccceEEEEEe------------------ecccceeeeec-CcceeEeecccccce
Confidence            3 79999999999997 678999999999999997                  67787777765 567999999999999


Q ss_pred             EEEEcCCCeEEEEECCCC--CceeeeeeeecCCeeeEEEecCCcEE--EEEeCCCeEEEEecCCCcEEEEEEecccccCC
Q 016982          219 LAYVGHNSMIYFVDDVGP--SPLAQNVAFRDLPLRDVLFVSEKMVI--GVGFDCNPMVFAADETGIWTFIKFLDERKTSS  294 (379)
Q Consensus       219 l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l--~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~  294 (379)
                      |++|+.|..+++||.+++  ....+.+.+|.+.|.++.|+|...++  .+++|+.+++|+.....  .            
T Consensus       315 l~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~------------  380 (423)
T KOG0313|consen  315 LASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--A------------  380 (423)
T ss_pred             eeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--C------------
Confidence            999999999999998875  33557788999999999999976543  37899999999876532  0            


Q ss_pred             CCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          295 SGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                    +.|                 .+.+|.+.|.++.|.      ++.+|+|||.|.+|+|+.-.
T Consensus       381 --------------ply-----------------dI~~h~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  381 --------------PLY-----------------DIAGHNDKVLSVDWN------EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             --------------cce-----------------eeccCCceEEEEecc------CCceEEeccCcceEEEeccc
Confidence                          111                 346899999999943      23589999999999998754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-35  Score=243.50  Aligned_cols=247  Identities=18%  Similarity=0.160  Sum_probs=222.9

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ++..+.+.|.++.|+|....++++-.+|.|.||+.++.  ..+..+.-..-||.+..|-+..+.+++|+.|..|++|+.+
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            45668999999999999999999999999999999997  7888888888899999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEEEee
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTS  163 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~  163 (379)
                      +.+.+..+  ..|...|++++.+|.-.++++++.|-.|++||++..  |.+.+.+ .+|...|.+++|+|. .+.+++++
T Consensus        86 t~ekV~~F--eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   86 TGEKVKTF--EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--WACEQTF-EGHEHYVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             cceeeEEe--eccccceeeeeecCCCCeEEecCCccEEEEeeccCc--eeeeeEE-cCcceEEEEEEecCCCccceeeee
Confidence            99866665  789999999999999999999999999999999875  4466677 999999999999995 58999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      -|++|+||.+                  .+..+..++++|...|+++.|-+  |..+|++|+.|.+++|||.++.. +++
T Consensus       161 LDrTVKVWsl------------------gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~  221 (794)
T KOG0276|consen  161 LDRTVKVWSL------------------GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQ  221 (794)
T ss_pred             ccccEEEEEc------------------CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHH
Confidence            9999999997                  55677889999999999999998  44699999999999999988855 779


Q ss_pred             eeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      ++.+|...|..+.|+|.-.+++ ++.||++++|....
T Consensus       222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             HhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            9999999999999999988777 67899999998543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-35  Score=220.69  Aligned_cols=263  Identities=18%  Similarity=0.280  Sum_probs=221.8

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCce-EEEEEeccCCCceEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW-EKLHVLQKHDQIVSGIDWSV--RSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~   82 (379)
                      ..+|++.|..+...-.|++||+++.|++|+|+...++.. .++.+|.+|.+||..++|..  .|.+|++++.||+|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            467899999999988999999999999999999987654 78899999999999999976  689999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC---C-
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN---N-  156 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~-  156 (379)
                      -+++++........|...|++++|.|.  |-.|++++.||.|.|.+++....+...+.. ..|.-.|++++|.|.   | 
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~g~  165 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAPGS  165 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh-hccccccceeeecCcCCCcc
Confidence            999988777777889999999999995  678999999999999999887555445555 899999999999995   3 


Q ss_pred             ----------cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC----CCEEEEE
Q 016982          157 ----------VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS----GNTLAYV  222 (379)
Q Consensus       157 ----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~  222 (379)
                                +.|++|+.|..|+||+..                ......-..+.+|.+.|+.++|.|.    ..+++++
T Consensus       166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~----------------~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  166 LVDQGPAAKVKRLVSGGCDNLVKIWKFD----------------SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             ccccCcccccceeeccCCccceeeeecC----------------CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence                      579999999999999862                1123444558899999999999995    3579999


Q ss_pred             cCCCeEEEEECCCCCc--eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEE
Q 016982          223 GHNSMIYFVDDVGPSP--LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIK  285 (379)
Q Consensus       223 ~~d~~i~v~d~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~  285 (379)
                      +.||++.||-......  ....+......++.+.||..|.+|+ ++.|+.+.+|..+..|.|..+.
T Consensus       230 SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~  295 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG  295 (299)
T ss_pred             cCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence            9999999997653311  1233334467799999999999999 6788899999999999998754

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=253.35  Aligned_cols=248  Identities=19%  Similarity=0.262  Sum_probs=214.3

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|.+++|+|+++++++++.|++|+|||+... ...++++.+|...|++++|+|+++++++|+.|++|++||++
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            34689999999999999999999999999999999332 37889999999999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc--CEEEEEEcCCCcEEEEe
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS--SVTSVAWHPNNVFLATT  162 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~  162 (379)
                      ++++...+  ..|...|.+++|++++++|++++.|+.|++||+.++... +.+.+ ..+..  +++++.|+|++.+++++
T Consensus       277 ~~~~~~~l--~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~  352 (456)
T KOG0266|consen  277 TGECVRKL--KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLL-SGAENSAPVTSVQFSPNGKYLLSA  352 (456)
T ss_pred             CCeEEEee--eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecc-cCCCCCCceeEEEECCCCcEEEEe
Confidence            99877766  779999999999999999999999999999999988732 12333 34433  59999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc---ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS---WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +.|+.+++||+                  ..+.+...+.+|..   .+.+...++.+.++++++.|+.|++||+.+.. .
T Consensus       353 ~~d~~~~~w~l------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~-~  413 (456)
T KOG0266|consen  353 SLDRTLKLWDL------------------RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG-I  413 (456)
T ss_pred             cCCCeEEEEEc------------------cCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc-h
Confidence            99999999997                  66777777777765   34556667899999999999999999998855 4


Q ss_pred             eeeeeee-cCCeeeEEEecCCcEEEEE---eCCCeEEEEec
Q 016982          240 AQNVAFR-DLPLRDVLFVSEKMVIGVG---FDCNPMVFAAD  276 (379)
Q Consensus       240 ~~~~~~~-~~~i~~~~~s~~~~~l~~~---~d~~~~i~~~~  276 (379)
                      ++.+.+| ...+..+.++|...+++.+   .|+.+++|..+
T Consensus       414 ~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  414 LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            5788888 8889999999999999854   48888888754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=4.8e-36  Score=223.26  Aligned_cols=291  Identities=15%  Similarity=0.223  Sum_probs=242.6

Q ss_pred             ccceeccCcceeEEEeCC---CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982            3 AIAVHQFAQCITCHAWSP---DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY   79 (379)
Q Consensus         3 ~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (379)
                      +..-++|..+|-.++|||   +|-+|++++.|+.-.+-+-+++  .-+-++.+|.+.|.+...+.+..+-++++.|-+-+
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na~~aasaaadftak   84 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK   84 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence            345689999999999986   8899999999999999888887  67889999999999999988888889999999999


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL  159 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  159 (379)
                      +||.-++..+..   ..|+.-|.+++|+.|.++|++|+.++.+++||++..+.  ....+ .+|.+.|..+-|....+.+
T Consensus        85 vw~a~tgdelhs---f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--pp~E~-~ghtg~Ir~v~wc~eD~~i  158 (334)
T KOG0278|consen   85 VWDAVTGDELHS---FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--PPKEI-SGHTGGIRTVLWCHEDKCI  158 (334)
T ss_pred             hhhhhhhhhhhh---hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--Cchhh-cCCCCcceeEEEeccCceE
Confidence            999999974444   46888999999999999999999999999999988763  23334 7999999999999988999


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      ++.+.|++||+||.                  +++..++++.. +.+|+++.++++|++|.++ ..+.|.+||..+-.. 
T Consensus       159 LSSadd~tVRLWD~------------------rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-  217 (334)
T KOG0278|consen  159 LSSADDKTVRLWDH------------------RTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-  217 (334)
T ss_pred             EeeccCCceEEEEe------------------ccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccc-
Confidence            99999999999997                  78888888876 5679999999999988665 567899999887653 


Q ss_pred             eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          240 AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      ++..+ ....|.+.+.+|+..+++ ++.|..++.|+++.+.....                          |        
T Consensus       218 lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--------------------------~--------  262 (334)
T KOG0278|consen  218 LKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--------------------------Y--------  262 (334)
T ss_pred             eeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeee--------------------------c--------
Confidence            35544 356688999999866554 66777788777765432211                          1        


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED  373 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~  373 (379)
                                 ..||.++|.||. |+|+|    ...|+||.||+||+|....++.
T Consensus       263 -----------nkgh~gpVhcVr-FSPdG----E~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 -----------NKGHFGPVHCVR-FSPDG----ELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             -----------ccCCCCceEEEE-ECCCC----ceeeccCCCceEEEEEecCCCc
Confidence                       168999999999 88777    8999999999999999876543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-34  Score=212.07  Aligned_cols=246  Identities=12%  Similarity=0.105  Sum_probs=209.4

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+..+.++|.++.|+-||+|.++++.|.+|++|+...+  .+++++.+|...|..++.+.|+..|++|+.|+.+.+||+.
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            45678999999999999999999999999999999887  8999999999999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      +++..+.+  .+|.+.|..+.|+.+...+++|+.|.++++||.+..... ..+.+ ......|.++..  .+..+++|+.
T Consensus        90 TGkv~Rr~--rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e-PiQil-dea~D~V~Si~v--~~heIvaGS~  163 (307)
T KOG0316|consen   90 TGKVDRRF--RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE-PIQIL-DEAKDGVSSIDV--AEHEIVAGSV  163 (307)
T ss_pred             cCeeeeec--ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-ccchh-hhhcCceeEEEe--cccEEEeecc
Confidence            99987776  789999999999999999999999999999999887633 24444 566788999888  4678999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      ||+++.||+                  +.+......-  ..+|+++.|+++++.++.++.|+++++.|-.+++ +++..+
T Consensus       164 DGtvRtydi------------------R~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk-lL~sYk  222 (307)
T KOG0316|consen  164 DGTVRTYDI------------------RKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK-LLKSYK  222 (307)
T ss_pred             CCcEEEEEe------------------ecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhH-HHHHhc
Confidence            999999997                  4555444333  4579999999999999999999999999988776 568888


Q ss_pred             eecCCee--eEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          245 FRDLPLR--DVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       245 ~~~~~i~--~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      +|...-+  ..+++.....++ ++.||.+++|++-+..
T Consensus       223 Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  223 GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             ccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence            8865533  345555455555 7789999999876653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.8e-36  Score=231.72  Aligned_cols=285  Identities=15%  Similarity=0.192  Sum_probs=236.9

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEE------EEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEK------LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      ++..+-+.|..|||||++|++|+.||-|.+|+..+++.+.      ...+.-+..+|.|+.|+.|...|++|+.||.|++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            5567789999999999999999999999999998874322      2334457789999999999999999999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      |.+.++.+.+.+. ..|...|+++.|+.|+..+++++.|.++++.-+..++   +.+.+ .+|...|+...|.++|.+++
T Consensus       290 Wri~tG~ClRrFd-rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK---~LKEf-rGHsSyvn~a~ft~dG~~ii  364 (508)
T KOG0275|consen  290 WRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK---CLKEF-RGHSSYVNEATFTDDGHHII  364 (508)
T ss_pred             EEEecchHHHHhh-hhhccCeeEEEEccCcchhhcccccceEEEeccccch---hHHHh-cCccccccceEEcCCCCeEE
Confidence            9999999988885 5799999999999999999999999999999998887   56777 89999999999999999999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC--CcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS--FSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      +++.||+|++|+.                  ++.+|+.++...  ..+|+++..-| +-..++++...++++|.++... 
T Consensus       365 saSsDgtvkvW~~------------------KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-  425 (508)
T KOG0275|consen  365 SASSDGTVKVWHG------------------KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-  425 (508)
T ss_pred             EecCCccEEEecC------------------cchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-
Confidence            9999999999996                  788888888543  45788888888 5567888889999999998753 


Q ss_pred             ceeeeeee---ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecc
Q 016982          238 PLAQNVAF---RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQ  313 (379)
Q Consensus       238 ~~~~~~~~---~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
                       +++.+..   .++...+.+.||.|.++. .+.|+.++.|....++.-.                               
T Consensus       426 -vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~-------------------------------  473 (508)
T KOG0275|consen  426 -VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER-------------------------------  473 (508)
T ss_pred             -EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee-------------------------------
Confidence             4455542   245566788999999887 6778777777755443211                               


Q ss_pred             ccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          314 SKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                     .+.-|...|..++ +.|..    +.|||=++||.+++|.
T Consensus       474 ---------------tl~VhEkdvIGl~-HHPHq----NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  474 ---------------TLPVHEKDVIGLT-HHPHQ----NLLASYSEDGLLKLWK  507 (508)
T ss_pred             ---------------eeecccccccccc-cCccc----chhhhhcccchhhhcC
Confidence                           2245888888999 66655    7999999999999996

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.5e-34  Score=213.14  Aligned_cols=246  Identities=15%  Similarity=0.258  Sum_probs=206.7

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~   82 (379)
                      ..+.+|...|.+++|+.+|..|++|+.|+++.+|+++...........+|.+.|-.++|+|.. ..+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            356788999999999999999999999999999999987555556678899999999999865 7899999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +..+++......   ++.-.-+.|+|+|+++++++.|..|.+.|.++.+.   ...  ......+..++|+.++.+++..
T Consensus        94 ~r~~k~~~~i~~---~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~---~~~--~~~~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   94 IRSGKCTARIET---KGENINITWSPDGEYIAVGNKDDRITFIDARTYKI---VNE--EQFKFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             eccCcEEEEeec---cCcceEEEEcCCCCEEEEecCcccEEEEEecccce---eeh--hcccceeeeeeecCCCCEEEEe
Confidence            999987666543   45556789999999999999999999999887762   222  3455667889999888887777


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      +..|.|.|...                  +.-+++.+++.|.....++.|+|+|+++|+|+.|..+.+||+..-- +.+.
T Consensus       166 ~GlG~v~ILsy------------------psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi-C~R~  226 (313)
T KOG1407|consen  166 NGLGCVEILSY------------------PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI-CERC  226 (313)
T ss_pred             cCCceEEEEec------------------cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh-hhee
Confidence            77899999875                  6788999999999999999999999999999999999999987754 4577


Q ss_pred             eeeecCCeeeEEEecCCcEEEEEe-CCCeEEEEec
Q 016982          243 VAFRDLPLRDVLFVSEKMVIGVGF-DCNPMVFAAD  276 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~~~~l~~~~-d~~~~i~~~~  276 (379)
                      +..+..||..++||.||++||+++ |..|-|-...
T Consensus       227 isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  227 ISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             eccccCceEEEEeccCcceeeccCccceEEeEecc
Confidence            778899999999999999999655 4455454443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-34  Score=212.97  Aligned_cols=256  Identities=18%  Similarity=0.230  Sum_probs=212.9

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      +..+.+..+.++|.++.|+-+|++.++++.|.+|++|+...+.++..+  .+|...|..++.+.|+..+++|+.|+.+.+
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY--sghG~EVlD~~~s~Dnskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY--SGHGHEVLDAALSSDNSKFASCGGDKAVQV   85 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee--cCCCceeeeccccccccccccCCCCceEEE
Confidence            356778889999999999999999999999999999999999987776  789999999999999999999999999999


Q ss_pred             EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                      ||+++++   +.+.+ .+|.+.|+.++|+.+...+++|+.|..+++||.+                .+..++++.+....
T Consensus        86 wDV~TGk---v~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR----------------S~s~ePiQildea~  145 (307)
T KOG0316|consen   86 WDVNTGK---VDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR----------------SRSFEPIQILDEAK  145 (307)
T ss_pred             EEcccCe---eeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcc----------------cCCCCccchhhhhc
Confidence            9999998   67777 8999999999999999999999999999999984                35667888888778


Q ss_pred             cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE-EEEeCCCeEEEEecCCCcEEE
Q 016982          205 SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       205 ~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~~~~~~~~  283 (379)
                      ..|.++..+  +..+++|+.||+++.||++.+..   .....+.||++++|++|++.+ +++-|..+++.+...+++.+ 
T Consensus       146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l---~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~-  219 (307)
T KOG0316|consen  146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL---SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLK-  219 (307)
T ss_pred             CceeEEEec--ccEEEeeccCCcEEEEEeeccee---ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHH-
Confidence            889999887  56799999999999999998863   223346799999999999865 47778888887654433211 


Q ss_pred             EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeee-ecccCCcccceEEEeecCce
Q 016982          284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVP-LREAGSSRITRFTTSGLDGK  362 (379)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~~~~l~t~~~Dg~  362 (379)
                                                                   ...||.+.=..+.. +....    ..+++||+||.
T Consensus       220 ---------------------------------------------sYkGhkn~eykldc~l~qsd----thV~sgSEDG~  250 (307)
T KOG0316|consen  220 ---------------------------------------------SYKGHKNMEYKLDCCLNQSD----THVFSGSEDGK  250 (307)
T ss_pred             ---------------------------------------------Hhcccccceeeeeeeecccc----eeEEeccCCce
Confidence                                                         22577665544442 22222    68999999999


Q ss_pred             EEEEeCCCccccccC
Q 016982          363 IVTWDLESQEDLLNY  377 (379)
Q Consensus       363 v~iW~~~~~~~~~~~  377 (379)
                      |.+||+.+...+-++
T Consensus       251 Vy~wdLvd~~~~sk~  265 (307)
T KOG0316|consen  251 VYFWDLVDETQISKL  265 (307)
T ss_pred             EEEEEeccceeeeee
Confidence            999999987766544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.2e-35  Score=248.83  Aligned_cols=252  Identities=16%  Similarity=0.149  Sum_probs=220.1

Q ss_pred             cccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeE
Q 016982            2 AAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNS   78 (379)
Q Consensus         2 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   78 (379)
                      ....+.+|.+.|.+++...+|-+|++|+.|.++++|.++++  +..++....+|.+.|.+++++..+ .+|+++|.|.++
T Consensus       357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl  436 (775)
T KOG0319|consen  357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL  436 (775)
T ss_pred             ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence            44567899999999996667889999999999999998543  234566678999999999997766 689999999999


Q ss_pred             EEEeccCCc-------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982           79 YVWNQEGSE-------WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        79 ~vw~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  151 (379)
                      ++|++...+       .........|...|++++++|+.+++|+|+.|++.+||+++...   +...+ .+|...|.++.
T Consensus       437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---l~~vL-sGH~RGvw~V~  512 (775)
T KOG0319|consen  437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---LLGVL-SGHTRGVWCVS  512 (775)
T ss_pred             EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce---EEEEe-eCCccceEEEE
Confidence            999997621       11111334688999999999999999999999999999999655   56667 89999999999


Q ss_pred             EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982          152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~  231 (379)
                      |+|.++.++|++.|++|+||.+                  .+..|+++|.+|...|..+.|-.+|+.|++++.||.|++|
T Consensus       513 Fs~~dq~laT~SgD~TvKIW~i------------------s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW  574 (775)
T KOG0319|consen  513 FSKNDQLLATCSGDKTVKIWSI------------------STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW  574 (775)
T ss_pred             eccccceeEeccCCceEEEEEe------------------ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence            9999999999999999999998                  7899999999999999999999999999999999999999


Q ss_pred             ECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982          232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~  276 (379)
                      ++.++. +..++..|+..|++++-+|.+.+++ ++.|+.+.+|...
T Consensus       575 nikt~e-C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  575 NIKTNE-CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             eccchh-hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence            999876 6699999999999999999887666 6788899998754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=226.01  Aligned_cols=285  Identities=15%  Similarity=0.223  Sum_probs=236.8

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      ...|+++...|....+++|+.|..+.++|...+  +.+.+++||...|+.+.++|+...+++++.|..|++|........
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~  296 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP  296 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence            356888888888789999999999999999987  788999999999999999999999999999999999998877633


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                      ..  ...|..+|+.+..+|.|.+|++++.|+...+.|++.+..  +.........-.+++.+|+|||..|.+|..|+.++
T Consensus       297 ~~--~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk  372 (506)
T KOG0289|consen  297 TS--SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK  372 (506)
T ss_pred             cc--cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE--EEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence            33  367999999999999999999999999999999998874  22222112334689999999999999999999999


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecC
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDL  248 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~  248 (379)
                      |||+                  +....+..|.+|.++|..++|+.+|-+|++++.|+.|++||+++.+.. +++.. ...
T Consensus       373 iwdl------------------ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~-kt~~l~~~~  433 (506)
T KOG0289|consen  373 IWDL------------------KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF-KTIQLDEKK  433 (506)
T ss_pred             EEEc------------------CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc-ceeeccccc
Confidence            9997                  566688899999999999999999999999999999999999987643 44443 235


Q ss_pred             CeeeEEEecCCcEEEEEeCCCeEEEEec-CCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccc
Q 016982          249 PLRDVLFVSEKMVIGVGFDCNPMVFAAD-ETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSR  327 (379)
Q Consensus       249 ~i~~~~~s~~~~~l~~~~d~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (379)
                      ++.++.|.+.|.+|+.+ ...+.+|... ..+.|......                                        
T Consensus       434 ~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~----------------------------------------  472 (506)
T KOG0289|consen  434 EVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKEL----------------------------------------  472 (506)
T ss_pred             cceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehh----------------------------------------
Confidence            79999999999999855 3345555544 24457765422                                        


Q ss_pred             ccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          328 TRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       328 ~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                         ..|.+..+++. |....    ++++++|.|..++++.+
T Consensus       473 ---~~~sg~st~v~-Fg~~a----q~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  473 ---ADHSGLSTGVR-FGEHA----QYLASTSMDAILRLYAL  505 (506)
T ss_pred             ---hhcccccceee-ecccc----eEEeeccchhheEEeec
Confidence               45777888888 76655    89999999999998764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-34  Score=251.12  Aligned_cols=256  Identities=14%  Similarity=0.201  Sum_probs=225.2

Q ss_pred             EeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEee
Q 016982           49 VLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYE  128 (379)
Q Consensus        49 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~  128 (379)
                      .++..+..|..++|+|....|+++-..|.|++||.+.+.++..+  ..|.++|..++|+|+..++++|+.|-.|++|++.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF--deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF--DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh--hccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            34556678999999999999999999999999999999877766  7899999999999999999999999999999999


Q ss_pred             cCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceE
Q 016982          129 QENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF  208 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  208 (379)
                      +..   +...+ .+|-+.|..+.|++.-.++++++.|.+|+||+-                  .+.+++..+.+|+..|.
T Consensus        82 ~rr---clftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw------------------qsr~~iavltGHnHYVM  139 (1202)
T KOG0292|consen   82 TRR---CLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW------------------QSRKCIAVLTGHNHYVM  139 (1202)
T ss_pred             cce---ehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEec------------------cCCceEEEEecCceEEE
Confidence            987   55666 799999999999999999999999999999994                  88999999999999999


Q ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCC----------------------------ceeeeeeeecCCeeeEEEecCCc
Q 016982          209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPS----------------------------PLAQNVAFRDLPLRDVLFVSEKM  260 (379)
Q Consensus       209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~----------------------------~~~~~~~~~~~~i~~~~~s~~~~  260 (379)
                      |..|+|....++++|-|.+|+|||+..-+                            .+...+.+|...|+-++|+|.-.
T Consensus       140 cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  140 CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP  219 (1202)
T ss_pred             eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc
Confidence            99999999999999999999999975310                            01245668888999999999988


Q ss_pred             EEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceee
Q 016982          261 VIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINC  339 (379)
Q Consensus       261 ~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  339 (379)
                      +++ ++.|..+++|..++.+.|++-                                            ...||.+.|.+
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvD--------------------------------------------tcrgH~nnVss  255 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVD--------------------------------------------TCRGHYNNVSS  255 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeeh--------------------------------------------hhhcccCCcce
Confidence            888 556778999999999999862                                            23699999999


Q ss_pred             eeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          340 IVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       340 ~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      +.++ |.    ..+++|.|+|++||+||+...+.++.+
T Consensus       256 vlfh-p~----q~lIlSnsEDksirVwDm~kRt~v~tf  288 (1202)
T KOG0292|consen  256 VLFH-PH----QDLILSNSEDKSIRVWDMTKRTSVQTF  288 (1202)
T ss_pred             EEec-Cc----cceeEecCCCccEEEEecccccceeee
Confidence            9954 33    379999999999999999988777765

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-34  Score=216.26  Aligned_cols=243  Identities=20%  Similarity=0.265  Sum_probs=208.9

Q ss_pred             cCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCC
Q 016982            9 FAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         9 ~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~   86 (379)
                      ..+.+..++|+++. +.+++++.||.++|||+... -.++..++.|...|.++.|++-. +.+++++.|++|++|+...+
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~  137 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP  137 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence            46889999999854 67888899999999996544 36899999999999999999864 56788899999999999988


Q ss_pred             ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEEEEeeC
Q 016982           87 EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFLATTST  164 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~  164 (379)
                      +.+.++  .+|...|....|+| ..+++++++.|+.+++||++....   ...+ ..|...+.++.|+. +.+.++||+.
T Consensus       138 ~Sv~Tf--~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~v  211 (311)
T KOG0277|consen  138 NSVQTF--NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSI-EAHNSEILCCDWSKYNHNVLATGGV  211 (311)
T ss_pred             cceEee--cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEE-EeccceeEeecccccCCcEEEecCC
Confidence            866655  78999999999999 688999999999999999988752   2234 78999999999987 4588999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      |+.|+.||++                 ....++..+.+|.-.|..++|||. ...|++++.|-+++|||...+...+.+.
T Consensus       212 d~~vr~wDir-----------------~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~  274 (311)
T KOG0277|consen  212 DNLVRGWDIR-----------------NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV  274 (311)
T ss_pred             CceEEEEehh-----------------hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh
Confidence            9999999983                 556778889999999999999995 5678999999999999988776677778


Q ss_pred             eeecCCeeeEEEec-CCcEEE-EEeCCCeEEEEe
Q 016982          244 AFRDLPLRDVLFVS-EKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       244 ~~~~~~i~~~~~s~-~~~~l~-~~~d~~~~i~~~  275 (379)
                      ..|..-+..+.|++ ++.++| ++.|..+++|+.
T Consensus       275 ~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  275 DHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hccceEEeccccccccCceeeecccccceeeecc
Confidence            88888899999998 566777 899999999973

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.5e-35  Score=230.55  Aligned_cols=290  Identities=18%  Similarity=0.248  Sum_probs=232.8

Q ss_pred             cceeccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      ..|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+...  ++..++..|.+.|..|++..  ..+++++.|.+|+.|.
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            4578999999999999977 78999999999999999987  78899999999999999986  6788999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLAT  161 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~  161 (379)
                      ++.. ....+   .....+..+.-+..++.+++++.  .|.|||.+...+   ...+ .-....+.++.|+|.. ..|++
T Consensus       136 ~~~~-p~~ti---lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P---v~sm-swG~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  136 IDGP-PLHTI---LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP---VSSM-SWGADSISSVKFNPVETSILAS  205 (433)
T ss_pred             ccCC-cceee---eccccccccccccccccccccCc--eeeecccccCCc---ccee-ecCCCceeEEecCCCcchheee
Confidence            8874 22222   34567778887777888999885  588999877663   4444 3345678999999976 67778


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      +..|+.|.+||+                  +...+++.... .-.-+.++|+|.+-.++++++|..++.||++.-...+.
T Consensus       206 ~~sDrsIvLyD~------------------R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~  266 (433)
T KOG0268|consen  206 CASDRSIVLYDL------------------RQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLN  266 (433)
T ss_pred             eccCCceEEEec------------------ccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccch
Confidence            889999999997                  55555554432 22346799999888889999999999999998877778


Q ss_pred             eeeeecCCeeeEEEecCCcEE-EEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982          242 NVAFRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN  320 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
                      ...+|.+.|.++.|||.|+-+ ++++|.+|+||..+.....++                          ++         
T Consensus       267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi--------------------------Yh---------  311 (433)
T KOG0268|consen  267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI--------------------------YH---------  311 (433)
T ss_pred             hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh--------------------------hh---------
Confidence            888999999999999999755 488999999999877543332                          10         


Q ss_pred             cccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                                .---..|.||. |+-|.    ++++|||+|+.||+|..+..+.+..
T Consensus       312 ----------tkRMq~V~~Vk-~S~Ds----kyi~SGSdd~nvRlWka~Aseklgv  352 (433)
T KOG0268|consen  312 ----------TKRMQHVFCVK-YSMDS----KYIISGSDDGNVRLWKAKASEKLGV  352 (433)
T ss_pred             ----------HhhhheeeEEE-Eeccc----cEEEecCCCcceeeeecchhhhcCC
Confidence                      11234688999 77776    9999999999999999987666543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-33  Score=244.04  Aligned_cols=263  Identities=14%  Similarity=0.114  Sum_probs=220.9

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      -...|..++|+|....++++-..|.|++||..-+  .++..|..|.++|..+.|+|+..++++|+.|-+|++|+..+.++
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc   85 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC   85 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence            3578999999999999999999999999999877  78899999999999999999999999999999999999999985


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                      ..+  +.+|-..|..+.|++.-.+|++++.|.+|+||++.+++   +...+ .+|...|.|..|+|....+++++-|.+|
T Consensus        86 lft--L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~---~iavl-tGHnHYVMcAqFhptEDlIVSaSLDQTV  159 (1202)
T KOG0292|consen   86 LFT--LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK---CIAVL-TGHNHYVMCAQFHPTEDLIVSASLDQTV  159 (1202)
T ss_pred             hhh--hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc---eEEEE-ecCceEEEeeccCCccceEEEecccceE
Confidence            554  48999999999999999999999999999999999998   56667 8999999999999999999999999999


Q ss_pred             EEEecccccccccccc--------CCCccCC--c-ccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          169 RVFSTFIKGVDIKEKK--------EGTSSDT--K-FGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~--------~~~~~~~--~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      +|||+.+-+.....+.        .....+.  . ..-..+.+++|...|+-++|+|.-.++++|+.|..|++|.+...+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            9999964221111111        0000000  0 111224568999999999999999999999999999999987654


Q ss_pred             c-eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          238 P-LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       238 ~-~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      . .+.+..+|.+.|.++.|+|...++. .|.|+.+++|+.+...
T Consensus       240 aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt  283 (1202)
T KOG0292|consen  240 AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT  283 (1202)
T ss_pred             ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence            2 3356779999999999999776665 7889999999987644

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-33  Score=235.51  Aligned_cols=251  Identities=14%  Similarity=0.185  Sum_probs=217.8

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                      +++..++..|.++.++|....++++-.+|.|.|||.++...+..+..  ...+|++..|-+..+++++|+.|..|++|++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEec
Confidence            45566889999999999999999999999999999999988887754  5678999999999999999999999999999


Q ss_pred             ecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982          128 EQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA  207 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  207 (379)
                      ++.+   ..+.+ ..|.+.|.+++.+|...++++++.|-.|++||-                 .....+.++|++|...|
T Consensus        85 nt~e---kV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w-----------------e~~wa~~qtfeGH~HyV  143 (794)
T KOG0276|consen   85 NTGE---KVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW-----------------ENEWACEQTFEGHEHYV  143 (794)
T ss_pred             ccce---eeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeec-----------------cCceeeeeEEcCcceEE
Confidence            9988   46667 899999999999999999999999999999996                 36678899999999999


Q ss_pred             EEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCC--cEEE-EEeCCCeEEEEecCCCcEEE
Q 016982          208 FGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK--MVIG-VGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       208 ~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~-~~~d~~~~i~~~~~~~~~~~  283 (379)
                      .+++|+| |.+.+++++-|++|++|.+.++.+ ..++++|...|+++.+-+.|  .+|+ ++.|..+++|++....+.+ 
T Consensus       144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~-nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~-  221 (794)
T KOG0276|consen  144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHP-NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ-  221 (794)
T ss_pred             EEEEecCCCccceeeeeccccEEEEEcCCCCC-ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH-
Confidence            9999999 778899999999999999988775 48899999999999999855  4555 6677789998865433222 


Q ss_pred             EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceE
Q 016982          284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKI  363 (379)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v  363 (379)
                                                                   .+.||...|..+.++     |.-++++|||+||+|
T Consensus       222 ---------------------------------------------TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  222 ---------------------------------------------TLEGHTNNVSFVFFH-----PELPIIISGSEDGTV  251 (794)
T ss_pred             ---------------------------------------------HhhcccccceEEEec-----CCCcEEEEecCCccE
Confidence                                                         457999999999955     333799999999999


Q ss_pred             EEEeCCCccc
Q 016982          364 VTWDLESQED  373 (379)
Q Consensus       364 ~iW~~~~~~~  373 (379)
                      |||+..+-+.
T Consensus       252 riWhs~Ty~l  261 (794)
T KOG0276|consen  252 RIWNSKTYKL  261 (794)
T ss_pred             EEecCcceeh
Confidence            9999887433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-32  Score=232.09  Aligned_cols=273  Identities=14%  Similarity=0.239  Sum_probs=223.7

Q ss_pred             EEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEee
Q 016982           16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVIL   95 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~   95 (379)
                      +.|+ ..+.||+|.. ..|++|+..++....+..+.  ...|+++.|+++|.+|++|..+|.|.|||....+..+.+  .
T Consensus       183 ldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~--~  256 (484)
T KOG0305|consen  183 LDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL--R  256 (484)
T ss_pred             hhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc--c
Confidence            5677 4567777744 58999999998544444443  789999999999999999999999999999888766655  4


Q ss_pred             c-CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecc
Q 016982           96 R-LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTF  174 (379)
Q Consensus        96 ~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~  174 (379)
                      . |...|-+++|+  +..+.+|+.|+.|..+|++..+.  ....+ .+|...|..++|++|+++||+|+.|+.+.|||. 
T Consensus       257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--~~~~~-~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~-  330 (484)
T KOG0305|consen  257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--VVSTL-QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG-  330 (484)
T ss_pred             CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--hhhhh-hcccceeeeeEECCCCCeeccCCCccceEeccC-
Confidence            4 89999999998  77899999999999999998774  22334 789999999999999999999999999999996 


Q ss_pred             ccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEc--CCCeEEEEECCCCCceeeeeeeecCCee
Q 016982          175 IKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVG--HNSMIYFVDDVGPSPLAQNVAFRDLPLR  251 (379)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~i~  251 (379)
                                       ...++...+..|...|..++|+| ...+||+|+  .|+.|++||..++..+ ..+. .+..|.
T Consensus       331 -----------------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-~~vd-tgsQVc  391 (484)
T KOG0305|consen  331 -----------------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-DSVD-TGSQVC  391 (484)
T ss_pred             -----------------CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-cccc-cCCcee
Confidence                             56677888999999999999999 677888875  7999999999987643 4444 467899


Q ss_pred             eEEEecCCcEEEE---EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccc
Q 016982          252 DVLFVSEKMVIGV---GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRT  328 (379)
Q Consensus       252 ~~~~s~~~~~l~~---~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (379)
                      ++.|++..+-|++   -.++.+.||.+..-.   ...                                           
T Consensus       392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---~~~-------------------------------------------  425 (484)
T KOG0305|consen  392 SLIWSKKYKELLSTHGYSENQITLWKYPSMK---LVA-------------------------------------------  425 (484)
T ss_pred             eEEEcCCCCEEEEecCCCCCcEEEEeccccc---eee-------------------------------------------
Confidence            9999998754442   246678888765421   111                                           


Q ss_pred             cccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          329 RGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       329 ~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      .+.||...|..++ .+||+    ..++||+.|.++++|++-+
T Consensus       426 ~l~gH~~RVl~la-~SPdg----~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  426 ELLGHTSRVLYLA-LSPDG----ETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             eecCCcceeEEEE-ECCCC----CEEEEecccCcEEeccccC
Confidence            3479999999999 77776    9999999999999999976

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.2e-34  Score=234.81  Aligned_cols=261  Identities=15%  Similarity=0.191  Sum_probs=216.2

Q ss_pred             EEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccC-CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeE
Q 016982           45 EKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEG-SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV  122 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v  122 (379)
                      +.+..+.+|...|+++.|.| .+.+|++++.|+.|+||++.. +.+++.+  .+|..+|.+++|+++|..+++++.|+.+
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf--~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF--KGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh--hcchhhhhhhhccccCCeeeeeecceee
Confidence            45678899999999999999 788999999999999999987 6666665  7899999999999999999999999999


Q ss_pred             EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      ++||.+++.   +...+  .....++|+.|+|++ +.+++|+.|+.|+.||+                  ++++.++++.
T Consensus       283 KlwDtETG~---~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi------------------Rs~kvvqeYd  339 (503)
T KOG0282|consen  283 KLWDTETGQ---VLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI------------------RSGKVVQEYD  339 (503)
T ss_pred             eeeccccce---EEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEec------------------cchHHHHHHH
Confidence            999999998   44444  445678999999998 89999999999999997                  7888888899


Q ss_pred             cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCc
Q 016982          202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGI  280 (379)
Q Consensus       202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~  280 (379)
                      .|-+.|..+.|-++|+++++++.|++++||+.+.+.........+.....++..+|++.+++ -+.|+.+.+|.....- 
T Consensus       340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~-  418 (503)
T KOG0282|consen  340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF-  418 (503)
T ss_pred             hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc-
Confidence            99999999999999999999999999999998887654334444455677899999999887 5788889888854321 


Q ss_pred             EEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc--ceeeeeeecccCCcccceEEEee
Q 016982          281 WTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN--CINCIVPLREAGSSRITRFTTSG  358 (379)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~l~t~~  358 (379)
                       +...                     ..                    .+.||..  --..+. |+|||    ++|++|+
T Consensus       419 -r~nk---------------------kK--------------------~feGh~vaGys~~v~-fSpDG----~~l~SGd  451 (503)
T KOG0282|consen  419 -RLNK---------------------KK--------------------RFEGHSVAGYSCQVD-FSPDG----RTLCSGD  451 (503)
T ss_pred             -ccCH---------------------hh--------------------hhcceeccCceeeEE-EcCCC----CeEEeec
Confidence             1100                     01                    2256743  334555 88776    9999999


Q ss_pred             cCceEEEEeCCCccccccCC
Q 016982          359 LDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       359 ~Dg~v~iW~~~~~~~~~~~~  378 (379)
                      .||.+.+||.++-+.+.+++
T Consensus       452 sdG~v~~wdwkt~kl~~~lk  471 (503)
T KOG0282|consen  452 SDGKVNFWDWKTTKLVSKLK  471 (503)
T ss_pred             CCccEEEeechhhhhhhccc
Confidence            99999999999988777654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.9e-32  Score=242.70  Aligned_cols=295  Identities=19%  Similarity=0.253  Sum_probs=232.3

Q ss_pred             ceecc-CcceeEEEeCCCCcEEEEEe--cCCeEEEEEecCC----------ceEEEEEeccCCCceEEEEEcCCCCEEEE
Q 016982            5 AVHQF-AQCITCHAWSPDHAMVAFCP--NNNEVHIYKLIQE----------KWEKLHVLQKHDQIVSGIDWSVRSNRIVT   71 (379)
Q Consensus         5 ~~~~~-~~~i~~~~~s~~~~~l~~~~--~dg~i~i~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~   71 (379)
                      +..+| ...|.+++.+|||..+|+|+  .|+.+.||+.+.=          -.+.+.++..|.+.|+|+.|+|||++||+
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs   86 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS   86 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence            33444 67899999999999999999  7999999997521          12456677889999999999999999999


Q ss_pred             EeCCCeEEEEeccC----------------CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE
Q 016982           72 VSHDRNSYVWNQEG----------------SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV  135 (379)
Q Consensus        72 ~~~d~~i~vw~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  135 (379)
                      |+.|+.|.+|....                ..+.....+.+|...|..++|+|++.++++++.|++|.+|+..+.+   .
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~---~  163 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE---L  163 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce---e
Confidence            99999999999772                0233445567899999999999999999999999999999998885   5


Q ss_pred             EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC------CcceEE
Q 016982          136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS------FSWAFG  209 (379)
Q Consensus       136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~  209 (379)
                      .+.+ .+|.+.|..+.|.|-|++|++-+.|++|+||++                  ......+.+..+      ...+..
T Consensus       164 ~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt------------------~dw~i~k~It~pf~~~~~~T~f~R  224 (942)
T KOG0973|consen  164 LKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT------------------SDWGIEKSITKPFEESPLTTFFLR  224 (942)
T ss_pred             eeee-ecccccccceEECCccCeeeeecCCceEEEEEc------------------ccceeeEeeccchhhCCCcceeee
Confidence            7777 899999999999999999999999999999986                  233344444332      234789


Q ss_pred             EEECCCCCEEEEEc----CCCeEEEEECCCCCceeeeeeeecCCeeeEEEec------CC---------c--EEE-EEeC
Q 016982          210 VKWSPSGNTLAYVG----HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS------EK---------M--VIG-VGFD  267 (379)
Q Consensus       210 ~~~sp~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~------~~---------~--~l~-~~~d  267 (379)
                      +.|||||.+|++..    .-..+.|.+-.+-+ .-..+-+|..++..+.|+|      ..         .  .+| ++.|
T Consensus       225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk-~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD  303 (942)
T KOG0973|consen  225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWK-VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD  303 (942)
T ss_pred             cccCCCcCeecchhhccCCcceeEEEecCCce-eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence            99999999999864    23478888864443 4477889999999999998      11         1  334 6789


Q ss_pred             CCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccC
Q 016982          268 CNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAG  347 (379)
Q Consensus       268 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  347 (379)
                      +.+.||.....+-.                            |.                 ...--...|..++ |++||
T Consensus       304 rSlSVW~T~~~RPl----------------------------~v-----------------i~~lf~~SI~Dms-WspdG  337 (942)
T KOG0973|consen  304 RSLSVWNTALPRPL----------------------------FV-----------------IHNLFNKSIVDMS-WSPDG  337 (942)
T ss_pred             ccEEEEecCCCCch----------------------------hh-----------------hhhhhcCceeeee-EcCCC
Confidence            99999985322100                            10                 0011256799999 88776


Q ss_pred             CcccceEEEeecCceEEEEeCCCcc
Q 016982          348 SSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       348 ~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                          ..|..||.||+|.+..+...+
T Consensus       338 ----~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  338 ----FSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             ----CeEEEEecCCeEEEEEcchHH
Confidence                899999999999999998643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=4.3e-32  Score=236.76  Aligned_cols=281  Identities=17%  Similarity=0.229  Sum_probs=238.3

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEE-eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHV-LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      +...+.+..|.  ..++++++.+++|++|+..++  ..+.. +.+|.+.|.++++...+.+|++|+.|.++++||..+++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence            46788888887  578999999999999999987  45555 99999999999998878899999999999999999999


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      +...+  .+|...+.++...  ...+++|+.|.+|++|++.++.   ....+ .+|.++|.++..+  +.++++|+.|++
T Consensus       283 C~~~l--~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~---~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~  352 (537)
T KOG0274|consen  283 CTHSL--QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGA---CLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGT  352 (537)
T ss_pred             EEEEe--cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcc---eEEEe-ccccccEEEEEec--CCEEEEEecCce
Confidence            87777  6899999998876  4578888999999999999887   56666 6699999999996  889999999999


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD  247 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  247 (379)
                      |++||+                  .++++++++.+|..+|.++.+.+. ..+++|+.|+.|++||+.+...++..+.+|.
T Consensus       353 v~VW~~------------------~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~  413 (537)
T KOG0274|consen  353 VKVWDP------------------RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHT  413 (537)
T ss_pred             EEEEEh------------------hhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCc
Confidence            999997                  689999999999999999988876 8899999999999999999845778888888


Q ss_pred             CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982          248 LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS  326 (379)
Q Consensus       248 ~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (379)
                      .-+..+.+  .+++|. ++.|+.|++|+..+.+..+..                                          
T Consensus       414 ~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~------------------------------------------  449 (537)
T KOG0274|consen  414 SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTL------------------------------------------  449 (537)
T ss_pred             cccccccc--ccceeEeccccccEEEeecccCceeeee------------------------------------------
Confidence            87766554  345555 788999999987776544432                                          


Q ss_pred             cccccc-cccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          327 RTRGGT-HVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       327 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                          .+ |...|..++ +. +     ..+++++.||.+++||+++++..+.+
T Consensus       450 ----~~~~~~~v~~l~-~~-~-----~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  450 ----EGRHVGGVSALA-LG-K-----EEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             ----ccCCcccEEEee-cC-c-----ceEEEEecCCeeEEEecccCchhhhh
Confidence                23 667788888 42 1     57999999999999999998887754

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-32  Score=211.73  Aligned_cols=298  Identities=15%  Similarity=0.213  Sum_probs=250.7

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec-
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ-   83 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~-   83 (379)
                      .+.+|.+.|+.++.......+.+++.|.+-+||.++++  .++.++.+|.+.|++++|++.+.++++++.|++-.||.. 
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA  220 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence            46789999999999888889999999999999999998  899999999999999999999999999999999999962 


Q ss_pred             -----cCC--------------------------------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982           84 -----EGS--------------------------------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY  126 (379)
Q Consensus        84 -----~~~--------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~  126 (379)
                           ...                                -.++...+.+|.+.|.+..|-..|+.+++++.|.+-.+||
T Consensus       221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD  300 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD  300 (481)
T ss_pred             hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence                 110                                0123445677889999999999999999999999999999


Q ss_pred             eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982          127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW  206 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (379)
                      ++++.   +...+ .+|....+.++-+|..+++++.+.|.+.++||.                 .+.-..+..|++|...
T Consensus       301 VEtge---~v~~L-tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF-----------------ReaI~sV~VFQGHtdt  359 (481)
T KOG0300|consen  301 VETGE---VVNIL-TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF-----------------REAIQSVAVFQGHTDT  359 (481)
T ss_pred             eccCc---eeccc-cCcchhccccccCCcceEEEEeccCceeEeccc-----------------hhhcceeeeecccccc
Confidence            99998   57777 899999999999999999999999999999997                 2455677889999999


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCC-CeEEEEecCCCcEEEEE
Q 016982          207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDC-NPMVFAADETGIWTFIK  285 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~-~~~i~~~~~~~~~~~~~  285 (379)
                      |+++.|..+.+ +++|+.|.+|++||+++....+.++. ...+++.++.+..+.+|+.-.|+ .+++|++++...-.+.+
T Consensus       360 VTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr  437 (481)
T KOG0300|consen  360 VTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR  437 (481)
T ss_pred             eeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence            99999997654 78999999999999999877777776 47889999999988899977665 79999988764322210


Q ss_pred             EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEE
Q 016982          286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVT  365 (379)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~i  365 (379)
                         .                                       .-.||..-|+|++| ..+- |- .-|.|||-|..+.=
T Consensus       438 ---t---------------------------------------sRqgHrRMV~c~AW-~eeh-p~-cnLftcGFDR~v~g  472 (481)
T KOG0300|consen  438 ---T---------------------------------------SRQGHRRMVTCCAW-LEEH-PA-CNLFTCGFDRMVAG  472 (481)
T ss_pred             ---c---------------------------------------cccccceeeeeeec-cccC-cc-cccccccccceeee
Confidence               0                                       11589999999994 4432 33 56789999999999


Q ss_pred             EeCCCcc
Q 016982          366 WDLESQE  372 (379)
Q Consensus       366 W~~~~~~  372 (379)
                      |+++...
T Consensus       473 W~in~p~  479 (481)
T KOG0300|consen  473 WKINTPT  479 (481)
T ss_pred             eEecccC
Confidence            9997643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-33  Score=239.06  Aligned_cols=247  Identities=17%  Similarity=0.226  Sum_probs=194.0

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC--------------------------------C-------------
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ--------------------------------E-------------   42 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------------------------------~-------------   42 (379)
                      .|.+.|.++.||+||+|||+|+.|+.|+||.+..                                .             
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            7999999999999999999999999999999865                                0             


Q ss_pred             -------------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-
Q 016982           43 -------------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-  108 (379)
Q Consensus        43 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-  108 (379)
                                   .-+++..+.+|.+.|..+.||.+ ++|++++.|++|+||++...+++..+   .|..-|+|++|+| 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F---~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF---SHNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE---ecCCeeEEEEeccc
Confidence                         01234457889999999999965 59999999999999999999876665   5999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCc
Q 016982          109 KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTS  188 (379)
Q Consensus       109 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  188 (379)
                      |.++|++|+-|+.++||++...+   +..-  .....-|++++|.|||++.+.|+.+|.+++|++........       
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~---Vv~W--~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~-------  488 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKK---VVDW--NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD-------  488 (712)
T ss_pred             CCCcEeecccccceEEeecCcCe---eEee--hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEe-------
Confidence            88999999999999999998876   3332  35558899999999999999999999999999742111110       


Q ss_pred             cCCcccceEEEe---ecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeeeeec--CCeeeEEEecCCcEE
Q 016982          189 SDTKFGEQILQL---DLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD--LPLRDVLFVSEKMVI  262 (379)
Q Consensus       189 ~~~~~~~~~~~~---~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l  262 (379)
                            ..+..-   ......|+.+.|.|. -..+++.+.|..|+|||.+... ++..+++..  ..-....|+.||++|
T Consensus       489 ------~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~I  561 (712)
T KOG0283|consen  489 ------FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHI  561 (712)
T ss_pred             ------eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEE
Confidence                  000000   011237999999984 3456777899999999987654 446666543  233567899999998


Q ss_pred             E-EEeCCCeEEEEecC
Q 016982          263 G-VGFDCNPMVFAADE  277 (379)
Q Consensus       263 ~-~~~d~~~~i~~~~~  277 (379)
                      + ++.|..+++|..+.
T Consensus       562 Vs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  562 VSASEDSWVYIWKNDS  577 (712)
T ss_pred             EEeecCceEEEEeCCC
Confidence            8 55677999999743

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.6e-32  Score=208.52  Aligned_cols=245  Identities=13%  Similarity=0.178  Sum_probs=210.0

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~   82 (379)
                      ..+.+|.++|..+.|++|++.|++++.|.+|+.||.+++  +..+.+++|..-|+++.-+.-| .++.+++.|+++++||
T Consensus        84 ~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen   84 WVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             eeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence            467899999999999999999999999999999999998  8999999999999999855445 4678889999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +++.+.+..+   ..+.+++++.|..++..+.+|+-|+.|++||++...   ....+ .+|.++|+.+..+|+|.++.+-
T Consensus       162 ~R~k~~~~t~---~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---~~~~l-sGh~DtIt~lsls~~gs~llsn  234 (338)
T KOG0265|consen  162 IRKKEAIKTF---ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---GLYTL-SGHADTITGLSLSRYGSFLLSN  234 (338)
T ss_pred             ecccchhhcc---ccceeEEEEEecccccceeeccccCceeeeccccCc---ceEEe-ecccCceeeEEeccCCCccccc
Confidence            9988755554   346789999999999999999999999999998887   45566 8999999999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc----ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS----WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      +.|.++++||++       +-       -+...++..+.+|..    .....+|+|++..+.+++.|..+++||..... 
T Consensus       235 sMd~tvrvwd~r-------p~-------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~-  299 (338)
T KOG0265|consen  235 SMDNTVRVWDVR-------PF-------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR-  299 (338)
T ss_pred             cccceEEEEEec-------cc-------CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc-
Confidence            999999999872       11       123455777766532    34678999999999999999999999966644 


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEE
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMV  272 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i  272 (379)
                      ++..+.+|.+.|.+++|+|...+|. +++|.++++
T Consensus       300 ~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  300 ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            6688999999999999999888776 778888765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2e-31  Score=222.87  Aligned_cols=243  Identities=19%  Similarity=0.213  Sum_probs=208.9

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+..|...+..+.|+|++++|++++.+|.|++|++.++  +....+..|...+.++.|+|+++++++++.++.+.+||+.
T Consensus        46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~  123 (289)
T cd00200          46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE  123 (289)
T ss_pred             EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            45668889999999999999999999999999999886  5667778898899999999998888888889999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      +++....+  ..|...+.++.|+|++.++++++.++.+++||++..+   ....+ ..|...+.++.|+|+++.+++++.
T Consensus       124 ~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~  197 (289)
T cd00200         124 TGKCLTTL--RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---CVATL-TGHTGEVNSVAFSPDGEKLLSSSS  197 (289)
T ss_pred             CcEEEEEe--ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc---cceeE-ecCccccceEEECCCcCEEEEecC
Confidence            77755544  4688899999999999988888889999999998765   34455 678889999999999999999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      ++.+++||+                  ..++.+..+..|...+.++.|+|++.++++++.++.|++||+.+.. ....+.
T Consensus       198 ~~~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~  258 (289)
T cd00200         198 DGTIKLWDL------------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQTLS  258 (289)
T ss_pred             CCcEEEEEC------------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce-eEEEcc
Confidence            999999997                  4566777777788899999999999888888889999999998765 346677


Q ss_pred             eecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          245 FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       245 ~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      .|...+.+++|+|++.+++ ++.|+.+.+|+
T Consensus       259 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            7888999999999988777 67788888874

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-31  Score=209.68  Aligned_cols=303  Identities=14%  Similarity=0.125  Sum_probs=220.6

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      ..+..|..|.++|.+++.+|+.++++||+.|..-.+|++.++.....  ..+|+..|+++.|+.+|.+||+|..+|.|+|
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSGKVLV  132 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence            35678899999999999999999999999999999999999985444  4789999999999999999999999999999


Q ss_pred             EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                      |...++..   ...+ ...-..+.-+.|+|.+..|+.|+.||.+.+|.+                  ......+.+.+|+
T Consensus       133 ~~~stg~~---~~~~-~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i------------------p~~~~~kv~~Gh~  190 (399)
T KOG0296|consen  133 FKVSTGGE---QWKL-DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI------------------PSQALCKVMSGHN  190 (399)
T ss_pred             EEcccCce---EEEe-ecccCceEEEEecccccEEEeecCCCcEEEEEC------------------CCcceeeEecCCC
Confidence            99998873   3334 345567888999999999999999999999997                  4557778899999


Q ss_pred             cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEE
Q 016982          205 SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       205 ~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~  283 (379)
                      .++++-.|.|+|+.++++..||+|++||+.++.++...-.....+..++.++..+..+. +..++.+++.+....+....
T Consensus       191 ~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  191 SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence            99999999999999999999999999999999876444434456677888888888777 44555555544333322222


Q ss_pred             EEE--eccccc--CCCCCccCCCcccccceeeccc--cccCcccccccccccccccccceeeeeeecccCCcccceEEEe
Q 016982          284 IKF--LDERKT--SSSGPKYGSQFSEAFGKLYGQS--KYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS  357 (379)
Q Consensus       284 ~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~  357 (379)
                      ...  +.....  ..........++..+..+.-..  .....-+......+...-|...|+.+.|.. +     .+|+|+
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-----~~l~t~  344 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-----DYLLTA  344 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c-----chheee
Confidence            110  000000  0000011111112222221111  111111111222334567899999999543 3     699999


Q ss_pred             ecCceEEEEeCCCccccccC
Q 016982          358 GLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       358 ~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      +.||.|++||.++|+++-.+
T Consensus       345 c~~g~v~~wDaRtG~l~~~y  364 (399)
T KOG0296|consen  345 CANGKVRQWDARTGQLKFTY  364 (399)
T ss_pred             ccCceEEeeeccccceEEEE
Confidence            99999999999999887543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=3.2e-32  Score=222.51  Aligned_cols=244  Identities=17%  Similarity=0.200  Sum_probs=187.5

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc--eEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK--WEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      .+.+|...|.++++.|.|-+|++|+.|..|++||...-.  .+..+.+. .....|++++|++.|..|++.+.....+|+
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~  241 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL  241 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence            466778999999999999999999999999999997531  11222222 234479999999999999888888899999


Q ss_pred             eccCCceeeeE----------EeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEe----ecCCcC
Q 016982           82 NQEGSEWVPTL----------VILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIR----KRHDSS  146 (379)
Q Consensus        82 ~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~~~~  146 (379)
                      |-...++....          ...+|...+++.+|+|. ...+++++.||++++||++..+.  ..+.+.    .+..-+
T Consensus       242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--QLQVIKTKPAGGKRVP  319 (641)
T ss_pred             ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--heeEEeeccCCCcccC
Confidence            97665433221          24568889999999995 46789999999999999987652  122221    234457


Q ss_pred             EEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccce-EEEeecCCc--ceEEEEECCCCCEEEEEc
Q 016982          147 VTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ-ILQLDLSFS--WAFGVKWSPSGNTLAYVG  223 (379)
Q Consensus       147 v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~v~~~~~sp~~~~l~~~~  223 (379)
                      ++.++|+|++++||+|..||.|.+|+..                ..+..+ ...-..|..  .|+++.||++|++|++-+
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~----------------~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKG----------------SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecC----------------CcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            8999999999999999999999999852                111122 222345655  899999999999999999


Q ss_pred             CCCeEEEEECCCCCceeeeeeee--cCCeeeEEEecCCcEEEEEe
Q 016982          224 HNSMIYFVDDVGPSPLAQNVAFR--DLPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~  266 (379)
                      .|+++++||+++.++.+....+-  ..+-+.++|||+.++|++|.
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGt  428 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGT  428 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecc
Confidence            99999999999987765554432  34578899999999998653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.8e-31  Score=249.46  Aligned_cols=269  Identities=15%  Similarity=0.162  Sum_probs=208.5

Q ss_pred             CCeEEEEEecCCceEEE---EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc----e--eeeEEeecCCCce
Q 016982           31 NNEVHIYKLIQEKWEKL---HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE----W--VPTLVILRLNRAA  101 (379)
Q Consensus        31 dg~i~i~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~----~--~~~~~~~~~~~~v  101 (379)
                      +|.+++|+...-.....   ..+..|...|.+++|+|++++|++|+.|+.|++|++....    .  .+... ..+...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVE-LASRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEE-ecccCce
Confidence            56677887765321111   1244588999999999999999999999999999975421    0  11122 2345688


Q ss_pred             eEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEEEEeeCCCeEEEEeccccccc
Q 016982          102 LCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVD  179 (379)
Q Consensus       102 ~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~  179 (379)
                      .+++|+| ++.+|++++.||.|++||+.+..   ....+ .+|...|.+++|+| ++.+|++|+.|+.|++||+      
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~------  605 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ---LVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI------  605 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCe---EEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC------
Confidence            9999987 57899999999999999998765   35555 78999999999997 7899999999999999997      


Q ss_pred             cccccCCCccCCcccceEEEeecCCcceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecC
Q 016982          180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS-PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE  258 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~  258 (379)
                                  ..+.++..+..+ ..+.++.|+ ++|.+|++|+.|+.|++||++........+.+|...|..+.|.+.
T Consensus       606 ------------~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~  672 (793)
T PLN00181        606 ------------NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS  672 (793)
T ss_pred             ------------CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC
Confidence                        556677777654 578999995 579999999999999999998766445677789999999999854


Q ss_pred             CcEEEEEeCCCeEEEEecCCC---cEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc
Q 016982          259 KMVIGVGFDCNPMVFAADETG---IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN  335 (379)
Q Consensus       259 ~~~l~~~~d~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  335 (379)
                      ..+++++.|+.+++|+.....   .+...                       .                    .+.+|..
T Consensus       673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l-----------------------~--------------------~~~gh~~  709 (793)
T PLN00181        673 STLVSSSTDNTLKLWDLSMSISGINETPL-----------------------H--------------------SFMGHTN  709 (793)
T ss_pred             CEEEEEECCCEEEEEeCCCCccccCCcce-----------------------E--------------------EEcCCCC
Confidence            445558889999999875321   00100                       1                    2368999


Q ss_pred             ceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          336 CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       336 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                      .++++. +++++    .+||+|+.||.|++|+....
T Consensus       710 ~i~~v~-~s~~~----~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        710 VKNFVG-LSVSD----GYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CeeEEE-EcCCC----CEEEEEeCCCEEEEEECCCC
Confidence            999998 77665    89999999999999997654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.2e-34  Score=221.49  Aligned_cols=240  Identities=13%  Similarity=0.211  Sum_probs=206.6

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|.+.|.|+.|.  .+.+++|+.|.+|++||.+++  +++.++.+|...|..+.|+  ..++++++.|.++.+||+
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg--e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm  304 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG--EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDM  304 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC--chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEec
Confidence            3578999999999995  569999999999999999998  8999999999999999998  459999999999999999


Q ss_pred             cCCceee-eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           84 EGSEWVP-TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        84 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      ....-+. ...+.+|...|..+.|+  .+++++++.|.+|++|++.+.+   ..+.+ .+|...|.|+.+  .++++++|
T Consensus       305 ~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e---fvRtl-~gHkRGIAClQY--r~rlvVSG  376 (499)
T KOG0281|consen  305 ASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE---FVRTL-NGHKRGIACLQY--RDRLVVSG  376 (499)
T ss_pred             cCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee---eehhh-hcccccceehhc--cCeEEEec
Confidence            8764111 11236789999999997  5699999999999999999988   67777 899999999988  68999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc----
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP----  238 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~----  238 (379)
                      +.|.+|++||+                  ..+.++..+++|..-|.++.|.  .+.+++|+.||.|++||+.....    
T Consensus       377 SSDntIRlwdi------------------~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~  436 (499)
T KOG0281|consen  377 SSDNTIRLWDI------------------ECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAP  436 (499)
T ss_pred             CCCceEEEEec------------------cccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccc
Confidence            99999999997                  7899999999999999999996  66799999999999999876533    


Q ss_pred             ----eeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982          239 ----LAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       239 ----~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                          ++..+..|.+.|..+.|.. -++++++.|..|.+|++.+.
T Consensus       437 ~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  437 ASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             ccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcCCC
Confidence                2344556788899999953 46777899999999987653

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.3e-31  Score=230.98  Aligned_cols=231  Identities=14%  Similarity=0.149  Sum_probs=183.4

Q ss_pred             cceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCce-----EEEEEeccCCCceEEEEEcCCC-CEEEEEeCCC
Q 016982            4 IAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKW-----EKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDR   76 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~   76 (379)
                      +.+.+|.+.|++++|+| ++++|++|+.|+.|++||+.++..     .++..+.+|...|.+++|+|++ ++|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            45788999999999999 889999999999999999976421     3567889999999999999986 6899999999


Q ss_pred             eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC-EEEEEEcCC
Q 016982           77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS-VTSVAWHPN  155 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~  155 (379)
                      +|++||+.+++....+  ..|...|.+++|+|++++|++++.|+.|++||++++.   ....+ ..|.+. ...+.|.++
T Consensus       149 tVrIWDl~tg~~~~~l--~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---~v~tl-~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        149 VVNVWDVERGKAVEVI--KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---IVSSV-EAHASAKSQRCLWAKR  222 (493)
T ss_pred             EEEEEECCCCeEEEEE--cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---EEEEE-ecCCCCcceEEEEcCC
Confidence            9999999998754444  6788999999999999999999999999999999876   34445 567654 456789998


Q ss_pred             CcEEEEee----CCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-CcceEEEEECCCCCEEEEEc-CCCeEE
Q 016982          156 NVFLATTS----TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-FSWAFGVKWSPSGNTLAYVG-HNSMIY  229 (379)
Q Consensus       156 ~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~d~~i~  229 (379)
                      +..+++++    .|+.|++||++                 ....++.....+ ...+....|++++++|++++ .|+.|+
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr-----------------~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Ir  285 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTR-----------------KMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIR  285 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCC-----------------CCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEE
Confidence            87777654    47899999972                 222333333322 33466678999999999887 599999


Q ss_pred             EEECCCCCceeeeee-eecCCeeeEEEecC
Q 016982          230 FVDDVGPSPLAQNVA-FRDLPLRDVLFVSE  258 (379)
Q Consensus       230 v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~  258 (379)
                      +||+.++... .... .+..++..++|.|.
T Consensus       286 iwdl~~~~~~-~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        286 CFELMNERLT-FCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             EEEeeCCceE-EEeeccCCCCCcceEeccc
Confidence            9999887643 3332 24567888999884

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-30  Score=197.36  Aligned_cols=245  Identities=13%  Similarity=0.166  Sum_probs=198.2

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC--CCeEEEEeccC
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH--DRNSYVWNQEG   85 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~   85 (379)
                      .....|+++.|+++|.++++++.|..++|||..++  +.+.++..+.-.+..+.|....+.++.++.  |.+|+..++.+
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d   89 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD   89 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence            34789999999999999999999999999999998  777888877778888899777666666665  88999999999


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      .+.++.+  .+|...|.+++.+|-+..+++++.|++|++||++..+.   ...+   +...-..++|.|.|-++|++...
T Consensus        90 NkylRYF--~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c---qg~l---~~~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   90 NKYLRYF--PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC---QGLL---NLSGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             CceEEEc--CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC---ceEE---ecCCCcceeECCCCcEEEEecCC
Confidence            9987776  89999999999999999999999999999999997763   3333   22233467899999999999888


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEee---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      ..|++||++.                -...+..++.   ......+.+.|||||++++.+...+.+++.|.-.+. +...
T Consensus       162 ~~IkLyD~Rs----------------~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~-~~~t  224 (311)
T KOG1446|consen  162 ELIKLYDLRS----------------FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT-VKST  224 (311)
T ss_pred             CeEEEEEecc----------------cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc-Eeee
Confidence            8999999731                1123333332   335678999999999999999999999999988876 4566


Q ss_pred             eeeecCC---eeeEEEecCCcEEEEE-eCCCeEEEEecCCC
Q 016982          243 VAFRDLP---LRDVLFVSEKMVIGVG-FDCNPMVFAADETG  279 (379)
Q Consensus       243 ~~~~~~~---i~~~~~s~~~~~l~~~-~d~~~~i~~~~~~~  279 (379)
                      +..+...   .-+.+|+||++++.+| .|+.+.+|+.....
T Consensus       225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence            6655432   2578999999999855 56999999986654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=5e-33  Score=221.15  Aligned_cols=285  Identities=13%  Similarity=0.192  Sum_probs=236.5

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.-|.+.+..+.|-++...|++|+.|..|++|+...++.....+|.+..++|+++.|.++++++++++.|+.+++|++
T Consensus       169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv  248 (459)
T KOG0288|consen  169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV  248 (459)
T ss_pred             hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence            34667899999999999989999999999999999998866788899999999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ...+...++  .+|...|+++.|......+++|+.|.+|++||+....   +.+.+  -....+.+|..+  ...+++|.
T Consensus       249 d~~r~~~TL--sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~---C~kt~--l~~S~cnDI~~~--~~~~~SgH  319 (459)
T KOG0288|consen  249 DSLRLRHTL--SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY---CSKTV--LPGSQCNDIVCS--ISDVISGH  319 (459)
T ss_pred             cchhhhhhh--cccccceeeehhhccccceeeccccchhhhhhhhhhh---eeccc--cccccccceEec--ceeeeecc
Confidence            998866666  6799999999999877779999999999999998865   44443  233455666664  55688899


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      .|++|++||+                  +...+......+ +.|+++..+++|..|++++.|.++.++|+++.. +...+
T Consensus       320 ~DkkvRfwD~------------------Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e-I~~~~  379 (459)
T KOG0288|consen  320 FDKKVRFWDI------------------RSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE-IRQTF  379 (459)
T ss_pred             cccceEEEec------------------cCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeeccccc-EEEEe
Confidence            9999999997                  677778887775 489999999999999999999999999998865 33444


Q ss_pred             eee----cCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          244 AFR----DLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       244 ~~~----~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      ...    ....+.+.|||++.|++ ++.|+.++||+...+++-....                                 
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~---------------------------------  426 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS---------------------------------  426 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec---------------------------------
Confidence            432    24478999999999998 6789999999988765433322                                 


Q ss_pred             ccccccccccccccccc-ceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          319 GNDAVESSRTRGGTHVN-CINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                  ..|.+ .|++++ |.+.|    ..|++++.++.+.+|.
T Consensus       427 ------------~s~s~~aI~s~~-W~~sG----~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  427 ------------LSTSNAAITSLS-WNPSG----SGLLSADKQKAVTLWT  459 (459)
T ss_pred             ------------cCCCCcceEEEE-EcCCC----chhhcccCCcceEecC
Confidence                        12333 799999 76665    8999999999999994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-31  Score=205.60  Aligned_cols=299  Identities=12%  Similarity=0.133  Sum_probs=215.0

Q ss_pred             ccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc--CCCceEEEEEcCCCCEE-EEEeCCCeEE
Q 016982            3 AIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK--HDQIVSGIDWSVRSNRI-VTVSHDRNSY   79 (379)
Q Consensus         3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~d~~i~   79 (379)
                      ...|++|.+.|++++|+.||++||+++.|+.|++|++.+=..+..+.++.  .-+..+.++|+||.+-+ +++-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            45689999999999999999999999999999999987521111111110  11245789999998655 4455566799


Q ss_pred             EEeccCCc---eeeeE-------EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE
Q 016982           80 VWNQEGSE---WVPTL-------VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS  149 (379)
Q Consensus        80 vw~~~~~~---~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~  149 (379)
                      +|.+...+   .....       ....|+..+..+-...++.+|++++.|..|.+|+++ ++   ....+ ......-+.
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq---~L~~i-dtnq~~n~~  233 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ---LLQSI-DTNQSSNYD  233 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc---eeeee-ccccccccc
Confidence            99875321   10000       112355667777778889999999999999999998 44   34555 455556678


Q ss_pred             EEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982          150 VAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY  229 (379)
Q Consensus       150 ~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~  229 (379)
                      .+.+|+|+++++++...-|++|.+-     +.....     .+.-..+.++.+|...|..++|+|+...+++.+.||.++
T Consensus       234 aavSP~GRFia~~gFTpDVkVwE~~-----f~kdG~-----fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr  303 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSGFTPDVKVWEPI-----FTKDGT-----FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR  303 (420)
T ss_pred             eeeCCCCcEEEEecCCCCceEEEEE-----eccCcc-----hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE
Confidence            8999999999999999999999861     111000     122344567889999999999999999999999999999


Q ss_pred             EEECCCCC------ceeeee----eeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCcc
Q 016982          230 FVDDVGPS------PLAQNV----AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKY  299 (379)
Q Consensus       230 v~d~~~~~------~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (379)
                      +||..-..      .+++..    ...++....+..+|+|+.||.+....+.+|....+......               
T Consensus       304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~---------------  368 (420)
T KOG2096|consen  304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPEL---------------  368 (420)
T ss_pred             EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhH---------------
Confidence            99964321      111221    12233445899999999999999888988876554322111               


Q ss_pred             CCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          300 GSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                                    -..|...|.+++ |+++|    ++++||| |..+|+..
T Consensus       369 ------------------------------e~~h~~~Is~is-~~~~g----~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  369 ------------------------------EDIHSTTISSIS-YSSDG----KYIATCG-DRYVRVIR  400 (420)
T ss_pred             ------------------------------HHhhcCceeeEE-ecCCC----cEEeeec-ceeeeeec
Confidence                                          146999999999 87766    9999999 66788765

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.3e-30  Score=223.50  Aligned_cols=247  Identities=15%  Similarity=0.180  Sum_probs=191.6

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceE-----------EEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE-----------KLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNS   78 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i   78 (379)
                      ..|.....++++..+++++.+.....|+...+...           ....+.+|.+.|.+++|+| ++++|++++.|++|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            44555666778776777777777777776543100           0124678999999999999 78899999999999


Q ss_pred             EEEeccCCce-----eeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982           79 YVWNQEGSEW-----VPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        79 ~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                      ++||+.++..     .+...+.+|...|.+++|+|++ ++|++++.|+.|++||++++.   ....+ ..|...|.+++|
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~---~~~~l-~~h~~~V~sla~  176 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK---AVEVI-KCHSDQITSLEW  176 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe---EEEEE-cCCCCceEEEEE
Confidence            9999976532     1233457799999999999975 699999999999999999876   34555 789999999999


Q ss_pred             cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc-eEEEEECCCCCEEEEEc----CCCe
Q 016982          153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW-AFGVKWSPSGNTLAYVG----HNSM  227 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~~~~----~d~~  227 (379)
                      +|++++|++++.|+.|++||+                  ++++.+..+..|.+. +..+.|.+++..+++++    .|+.
T Consensus       177 spdG~lLatgs~Dg~IrIwD~------------------rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~  238 (493)
T PTZ00421        177 NLDGSLLCTTSKDKKLNIIDP------------------RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ  238 (493)
T ss_pred             ECCCCEEEEecCCCEEEEEEC------------------CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe
Confidence            999999999999999999997                  667778888888654 45788999888877654    4789


Q ss_pred             EEEEECCCCCceeeeeeeec-CCeeeEEEecCCcEEE-EE-eCCCeEEEEecCCC
Q 016982          228 IYFVDDVGPSPLAQNVAFRD-LPLRDVLFVSEKMVIG-VG-FDCNPMVFAADETG  279 (379)
Q Consensus       228 i~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~-~~-~d~~~~i~~~~~~~  279 (379)
                      |++||+++..........+. ..+....|++++.+|+ ++ .|+.|++|++....
T Consensus       239 VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        239 IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             EEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            99999987654444443332 3455667899998777 44 48999999988754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-31  Score=214.67  Aligned_cols=284  Identities=16%  Similarity=0.208  Sum_probs=226.1

Q ss_pred             eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      +..-.+.|++++|+|... -+|+.+. -.+.||+..+.  ....++......+.++.|-.||++|+.|+..|.|+++|+.
T Consensus        22 ~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~--~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   22 VHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR--SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK   98 (487)
T ss_pred             cccccCcceeEecCCCCCCceEEecc-cEEEEEecchh--hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence            344467999999999553 3555443 58999998875  4555566677889999999999999999999999999977


Q ss_pred             CCceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEe
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATT  162 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~  162 (379)
                      +....+.+  .+|+.++..+.|+|+ +..+++|++|+.+++||+.+..   +...+ .+|.+.|.|.+|+|.. ..+++|
T Consensus        99 ~r~iLR~~--~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v~~~l-~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen   99 SRVILRQL--YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---VQAEL-SGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             cHHHHHHH--hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---EEEEe-cCCcceeEeeccccCCCeEEEec
Confidence            65544444  789999999999995 5577788888999999999876   33344 8999999999999965 588999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      ++||.|++||++                 .....+.++ .|..+|..+.+-|.|..+++++ ...+++||+.++.+.+..
T Consensus       173 sYDg~vrl~DtR-----------------~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~  233 (487)
T KOG0310|consen  173 SYDGKVRLWDTR-----------------SLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTS  233 (487)
T ss_pred             CCCceEEEEEec-----------------cCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhh
Confidence            999999999982                 222556665 4678999999999999999876 568999999988777677


Q ss_pred             eeeecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccc
Q 016982          243 VAFRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGND  321 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (379)
                      ...|...|+|+++..++. +|+++-|+.+++|+..+   |++....                                  
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---~Kvv~s~----------------------------------  276 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---YKVVHSW----------------------------------  276 (487)
T ss_pred             hhcccceEEEEEeecCCceEeecccccceEEEEccc---eEEEEee----------------------------------
Confidence            767999999999999876 55588999999999654   4544322                                  


Q ss_pred             ccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          322 AVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       322 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                .-.++|.+++ .++++    +.++.|..||.+.+=+..
T Consensus       277 ----------~~~~pvLsia-vs~dd----~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  277 ----------KYPGPVLSIA-VSPDD----QTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             ----------ecccceeeEE-ecCCC----ceEEEecccceeeeehhh
Confidence                      2356899999 66555    899999999998876443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5.9e-31  Score=233.25  Aligned_cols=251  Identities=18%  Similarity=0.292  Sum_probs=208.2

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC----------------CceEEEEEeccCCCceEEEEEcCCCCE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ----------------EKWEKLHVLQKHDQIVSGIDWSVRSNR   68 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~   68 (379)
                      +...|.+.|+|+.|+|||++||+|+.|+.|.||+...                ..|+....+.+|+..|..++|+|++.+
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence            4567999999999999999999999999999999872                137788999999999999999999999


Q ss_pred             EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-----ecC
Q 016982           69 IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-----KRH  143 (379)
Q Consensus        69 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-----~~~  143 (379)
                      |++++.|++|.+||..+.+....+  .+|.+.|..+.|.|-|++||+-+.|++|++|+...-.   +.+.+.     ...
T Consensus       144 lvS~s~DnsViiwn~~tF~~~~vl--~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---i~k~It~pf~~~~~  218 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFELLKVL--RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---IEKSITKPFEESPL  218 (942)
T ss_pred             EEEecccceEEEEccccceeeeee--ecccccccceEECCccCeeeeecCCceEEEEEcccce---eeEeeccchhhCCC
Confidence            999999999999999999755555  7899999999999999999999999999999955422   344441     122


Q ss_pred             CcCEEEEEEcCCCcEEEEeeC----CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC----
Q 016982          144 DSSVTSVAWHPNNVFLATTST----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS----  215 (379)
Q Consensus       144 ~~~v~~~~~~p~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----  215 (379)
                      ...+..+.|+|||++|++...    -..+.|.+                  ..+.+.-..+-+|.+++..+.|+|.    
T Consensus       219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie------------------R~tWk~~~~LvGH~~p~evvrFnP~lfe~  280 (942)
T KOG0973|consen  219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE------------------RGTWKVDKDLVGHSAPVEVVRFNPKLFER  280 (942)
T ss_pred             cceeeecccCCCcCeecchhhccCCcceeEEEe------------------cCCceeeeeeecCCCceEEEEeChHHhcc
Confidence            346789999999999998653    33567776                  3566777888999999999999982    


Q ss_pred             -CC------------EEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCC
Q 016982          216 -GN------------TLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADET  278 (379)
Q Consensus       216 -~~------------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~  278 (379)
                       .+            .+|+|+.|++|.||.....+++.-.....+..|..++|+|||. +++++.||++.++.+.+.
T Consensus       281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             ccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence             11            5788999999999998777765444444578899999999997 556999999999987653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.7e-29  Score=184.19  Aligned_cols=292  Identities=16%  Similarity=0.120  Sum_probs=219.7

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC------C----c---eEEEEEeccCCCceEEEEEcCCCCEEEEEe
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ------E----K---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVS   73 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~------~----~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   73 (379)
                      ..-...|.+++|+|.|.+.|+|++..+++|.....      .    +   ......-+.|.+.|.|.+|+|+|++|++|+
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            34467899999999999999999999988865421      0    0   112233456889999999999999999999


Q ss_pred             CCCeEEEEeccCCcee---eeEEeecCCCceeEEEECCC----CCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCc
Q 016982           74 HDRNSYVWNQEGSEWV---PTLVILRLNRAALCVQWSPK----ENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDS  145 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~  145 (379)
                      +|++|++...+...+.   ..+++.-|.+.|..++|-.+    +..|++++. |..|++-|...++.   ...+ .+|.+
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~---~~a~-sghtg  184 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG---FHAL-SGHTG  184 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc---ceee-cCCcc
Confidence            9999999876644321   23455668999999999653    456666554 55666666666653   4445 78999


Q ss_pred             CEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec--C-----CcceEEEEECCCCCE
Q 016982          146 SVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL--S-----FSWAFGVKWSPSGNT  218 (379)
Q Consensus       146 ~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~v~~~~~sp~~~~  218 (379)
                      .|.++ ++-++-.+++|+.|.+|++||+                  +...++.++..  |     ...|.+++..|.|++
T Consensus       185 hilal-yswn~~m~~sgsqdktirfwdl------------------rv~~~v~~l~~~~~~~glessavaav~vdpsgrl  245 (350)
T KOG0641|consen  185 HILAL-YSWNGAMFASGSQDKTIRFWDL------------------RVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL  245 (350)
T ss_pred             cEEEE-EEecCcEEEccCCCceEEEEee------------------eccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence            98877 3447889999999999999997                  44555555421  1     356899999999999


Q ss_pred             EEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCC
Q 016982          219 LAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGP  297 (379)
Q Consensus       219 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  297 (379)
                      |++|-.|....+||++.+. .++.+..|...|.++.|+|...++. +++|..|++-++.+.-.-++              
T Consensus       246 l~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el--------------  310 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL--------------  310 (350)
T ss_pred             eeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcC--------------
Confidence            9999999999999999987 4588889999999999999887766 78898888766543210010              


Q ss_pred             ccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          298 KYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                ...                  ....|.+.+..+.|++.+     --|++.+.|.++-+|-++
T Consensus       311 ----------~~~------------------vv~ehkdk~i~~rwh~~d-----~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  311 ----------PIM------------------VVAEHKDKAIQCRWHPQD-----FSFISSSADKTATLWALN  349 (350)
T ss_pred             ----------ceE------------------EEEeccCceEEEEecCcc-----ceeeeccCcceEEEeccC
Confidence                      000                  124588889999977555     468899999999999764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.8e-31  Score=206.91  Aligned_cols=252  Identities=16%  Similarity=0.206  Sum_probs=207.2

Q ss_pred             cceeccCcceeEEEeCCC---CcEEEEEecCCeEEEEEecCCce--EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982            4 IAVHQFAQCITCHAWSPD---HAMVAFCPNNNEVHIYKLIQEKW--EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNS   78 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (379)
                      .++.+|.++|.+++|-..   ...|++++.|.++++|..+.+..  +.+..-.||...|.+++..++|..+++|+.|.+|
T Consensus       138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l  217 (423)
T KOG0313|consen  138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML  217 (423)
T ss_pred             EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence            457899999998888432   24699999999999999987632  2333345999999999999999999999999999


Q ss_pred             EEEeccC-----------------------CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE
Q 016982           79 YVWNQEG-----------------------SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV  135 (379)
Q Consensus        79 ~vw~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  135 (379)
                      .+|+...                       +...+...+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..   
T Consensus       218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~---  293 (423)
T KOG0313|consen  218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL---  293 (423)
T ss_pred             eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc---
Confidence            9999321                       11234455678999999999998 67899999999999999999873   


Q ss_pred             EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC
Q 016982          136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS  215 (379)
Q Consensus       136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  215 (379)
                      ...+  .....+.+++.+|..++|++|+.|..+++||.+.               ....-...++.+|...|.++.|+|.
T Consensus       294 ~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~---------------~~gs~v~~s~~gH~nwVssvkwsp~  356 (423)
T KOG0313|consen  294 KSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT---------------GDGSVVSQSLIGHKNWVSSVKWSPT  356 (423)
T ss_pred             eeee--ecCcceeEeecccccceeeecCCCCceeecCCCC---------------CCCceeEEeeecchhhhhheecCCC
Confidence            3333  3556889999999999999999999999999631               1122345678999999999999995


Q ss_pred             -CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          216 -GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       216 -~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                       ...|++++.|+++++||+++.+..+..+.+|+..|.++.|...+.++.+|.|.+++++...
T Consensus       357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence             5568899999999999999998667899999999999999876666678999999998754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-31  Score=224.79  Aligned_cols=243  Identities=17%  Similarity=0.225  Sum_probs=213.9

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC-----
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG-----   85 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-----   85 (379)
                      +-+.|..|-|.++++++|...|.+.+||+...  ..+.+.++|.+.|.+++.+||+..+++++.|.+|++||..-     
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~--~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~  490 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASA--SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP  490 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehh--hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence            36778899999999999999999999999987  67778889999999999999999999999999999999641     


Q ss_pred             CceeeeEE-----eecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           86 SEWVPTLV-----ILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        86 ~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      +.....+.     .......|.|+++||||++|+++--|.++++|-+++-+   ..-.+ .+|.-||.|+..+||++.++
T Consensus       491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---FflsL-YGHkLPV~smDIS~DSkliv  566 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---FFLSL-YGHKLPVLSMDISPDSKLIV  566 (888)
T ss_pred             cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---eeeee-cccccceeEEeccCCcCeEE
Confidence            21111111     12345789999999999999999999999999999876   34444 79999999999999999999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      ||+.|.+|++|-+                  ..|.|.+++-+|...|.++.|-|....+++++.|+.|+-||-.+-. .+
T Consensus       567 TgSADKnVKiWGL------------------dFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~i  627 (888)
T KOG0306|consen  567 TGSADKNVKIWGL------------------DFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EI  627 (888)
T ss_pred             eccCCCceEEecc------------------ccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-hh
Confidence            9999999999986                  7899999999999999999999999999999999999999977655 56


Q ss_pred             eeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982          241 QNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      +.+.+|...|++++.+|+|.+++ ++.|.++++|.....
T Consensus       628 q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  628 QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence            89999999999999999999888 678899999997654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8e-31  Score=220.67  Aligned_cols=239  Identities=20%  Similarity=0.254  Sum_probs=206.7

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      ...|+++.|+++|.+||+|..+|.|.|||..+.  +.+..+.+ |...|.+++|.  +..+.+|+.|+.|..+|+...+.
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~  292 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH  292 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh
Confidence            789999999999999999999999999999886  67777888 99999999998  66899999999999999998875


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEEEee--CC
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTS--TD  165 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~--~d  165 (379)
                      ... ....|...|..+.|++|++++|+|+.|+.+.|||.....   ....+ ..|...|.+++|+|- ..+||+|+  .|
T Consensus       293 ~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~---p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D  367 (484)
T KOG0305|consen  293 VVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE---PKFTF-TEHTAAVKALAWCPWQSGLLATGGGSAD  367 (484)
T ss_pred             hhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc---ccEEE-eccceeeeEeeeCCCccCceEEcCCCcc
Confidence            444 357899999999999999999999999999999995555   24445 799999999999995 47888865  59


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc--CCCeEEEEECCCCCceeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--HNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~  243 (379)
                      +.|++||+                  .++..+..+.. ...|.+|.|++..+-|+++.  .++.|.||+..+.+ .+..+
T Consensus       368 ~~i~fwn~------------------~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~-~~~~l  427 (484)
T KOG0305|consen  368 RCIKFWNT------------------NTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK-LVAEL  427 (484)
T ss_pred             cEEEEEEc------------------CCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc-eeeee
Confidence            99999997                  67777777765 56799999999887777653  56789999998866 45888


Q ss_pred             eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      .+|...|..++++|||..++ ++.|.++++|+.-+
T Consensus       428 ~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  428 LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             cCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            99999999999999999887 77899999998654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-31  Score=213.50  Aligned_cols=239  Identities=13%  Similarity=0.154  Sum_probs=199.6

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEecc
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~   84 (379)
                      +..+.+.|+++.|-.||++||+|...|.|+|||+.+.  ..++.+.+|+.++..+.|+|++ ..+++|+.|+.+++||+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s  141 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS  141 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence            4556889999999999999999999999999996664  5678889999999999999977 467888899999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      +...  ...+.+|+..|.+.+|+| ++..+++|+.||.|++||.+....  ....  ..|..+|..+.+-|.|..+++++
T Consensus       142 ~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~e--lnhg~pVe~vl~lpsgs~iasAg  215 (487)
T KOG0310|consen  142 TAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVE--LNHGCPVESVLALPSGSLIASAG  215 (487)
T ss_pred             CcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEE--ecCCCceeeEEEcCCCCEEEEcC
Confidence            8873  556689999999999999 456899999999999999998752  2222  58999999999999999999887


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                       ...++|||+                 ..-++.+..+..|...|+|+.+..++..|++++-|+.+++||+.+-+ .+..+
T Consensus       216 -Gn~vkVWDl-----------------~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~  276 (487)
T KOG0310|consen  216 -GNSVKVWDL-----------------TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSW  276 (487)
T ss_pred             -CCeEEEEEe-----------------cCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE-EEEee
Confidence             457999998                 23455555666699999999999999999999999999999965543 44555


Q ss_pred             eeecCCeeeEEEecCCcEEEEEeCCCeEE
Q 016982          244 AFRDLPLRDVLFVSEKMVIGVGFDCNPMV  272 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~~~~d~~~~i  272 (379)
                      . ..++|.+++.+|+++.++.|..+.+..
T Consensus       277 ~-~~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  277 K-YPGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             e-cccceeeEEecCCCceEEEecccceee
Confidence            4 478999999999999888665544433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.4e-31  Score=226.20  Aligned_cols=248  Identities=18%  Similarity=0.252  Sum_probs=188.2

Q ss_pred             EEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC--------------------------------C-------
Q 016982           47 LHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG--------------------------------S-------   86 (379)
Q Consensus        47 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~--------------------------------~-------   86 (379)
                      .+.+. .|.+.|.++.||+||+|||+|+.|+.|+||.+..                                .       
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34455 8999999999999999999999999999998755                                0       


Q ss_pred             -------------------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE
Q 016982           87 -------------------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV  147 (379)
Q Consensus        87 -------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v  147 (379)
                                         ...+...+.+|.+.|.++.|+.+ ++|++++.|++|++|++....   +.+.+  .|.+.|
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~---CL~~F--~HndfV  412 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE---CLKVF--SHNDFV  412 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc---eeeEE--ecCCee
Confidence                               00011124678889999999965 589999999999999999777   56665  899999


Q ss_pred             EEEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC
Q 016982          148 TSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS  226 (379)
Q Consensus       148 ~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~  226 (379)
                      +|++|+| |.++|++|+-|+.|+||++                  ...+ +.....-..-|++++|.|||++.+.|+.+|
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI------------------~d~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G  473 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSI------------------SDKK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNG  473 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeec------------------CcCe-eEeehhhhhhheeEEeccCCceEEEEEecc
Confidence            9999999 6699999999999999997                  3333 333333347799999999999999999999


Q ss_pred             eEEEEECCCCCceeeeeee--e------cCCeeeEEEecCC--cEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCC
Q 016982          227 MIYFVDDVGPSPLAQNVAF--R------DLPLRDVLFVSEK--MVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSG  296 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~~~--~------~~~i~~~~~s~~~--~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  296 (379)
                      .+++|+....+. ......  +      ...|+++.|.|..  ++|+++.|..|+||+..+.....              
T Consensus       474 ~C~fY~t~~lk~-~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~--------------  538 (712)
T KOG0283|consen  474 YCRFYDTEGLKL-VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH--------------  538 (712)
T ss_pred             EEEEEEccCCeE-EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh--------------
Confidence            999999877542 222211  1      2369999999843  58999999999999975432211              


Q ss_pred             CccCCCcccccceeeccccccCccccccccccccccccc-ceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          297 PKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN-CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                  +|                    +|+.+ .-.--+-|+.||    ++|+++++|..|++|++..
T Consensus       539 ------------Kf--------------------KG~~n~~SQ~~Asfs~Dg----k~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  539 ------------KF--------------------KGFRNTSSQISASFSSDG----KHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ------------hh--------------------cccccCCcceeeeEccCC----CEEEEeecCceEEEEeCCC
Confidence                        11                    12211 111122366666    9999999999999999854

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.5e-32  Score=201.34  Aligned_cols=247  Identities=13%  Similarity=0.128  Sum_probs=213.0

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .++.+|.+.|+....+.+..+.|+++.|-+-++||.-++  ..++.+. |..-|.+++|+.|.++|++|+.++.+++||+
T Consensus        53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl  129 (334)
T KOG0278|consen   53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL  129 (334)
T ss_pred             EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence            467899999999999999999999999999999999887  6777776 7889999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      +..+- +..++.+|.+.|..+.|....+.|++.+.|++|++||.+++.   ..+.+  ....+|+++..+++|++|.+ .
T Consensus       130 n~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---~v~sL--~~~s~VtSlEvs~dG~ilTi-a  202 (334)
T KOG0278|consen  130 NRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT---EVQSL--EFNSPVTSLEVSQDGRILTI-A  202 (334)
T ss_pred             cCCCC-CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc---EEEEE--ecCCCCcceeeccCCCEEEE-e
Confidence            88763 334557899999999999989999999999999999999998   35555  45678999999999986655 4


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      ..+.|.+||.                  .+-..++.+.. ...|.+..++|+...+++|++|..++.||..++.++....
T Consensus       203 ~gssV~Fwda------------------ksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n  263 (334)
T KOG0278|consen  203 YGSSVKFWDA------------------KSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN  263 (334)
T ss_pred             cCceeEEecc------------------ccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc
Confidence            6778999996                  55566666654 4568999999999999999999999999999998765545


Q ss_pred             eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      ++|.++|.++.|+|+|.+.+ ++.||++++|.....+
T Consensus       264 kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  264 KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             cCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            88999999999999999988 6689999999987654

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=1.1e-28  Score=216.14  Aligned_cols=226  Identities=12%  Similarity=0.105  Sum_probs=174.2

Q ss_pred             EecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeccCCce------eeeEEeecCCCc
Q 016982           28 CPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR-SNRIVTVSHDRNSYVWNQEGSEW------VPTLVILRLNRA  100 (379)
Q Consensus        28 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~~~  100 (379)
                      |+.++.|++|+....  ..+..+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.++..      .+...+.+|...
T Consensus        50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            455788999988765  678889999999999999997 78999999999999999976421      112234678999


Q ss_pred             eeEEEECCCCCE-EEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccc
Q 016982          101 ALCVQWSPKENK-FAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVD  179 (379)
Q Consensus       101 v~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~  179 (379)
                      |.+++|+|++.. +++++.|+.|++||++++.   ....+  .|...|.+++|+|+|++|++++.|+.|+|||+      
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~---~~~~i--~~~~~V~SlswspdG~lLat~s~D~~IrIwD~------  196 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK---RAFQI--NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP------  196 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCc---EEEEE--ecCCcEEEEEECCCCCEEEEEecCCEEEEEEC------
Confidence            999999998875 5788999999999999876   23333  35678999999999999999999999999997      


Q ss_pred             cccccCCCccCCcccceEEEeecCCcceE-----EEEECCCCCEEEEEcCCC----eEEEEECCCCCceeeeeeeec--C
Q 016982          180 IKEKKEGTSSDTKFGEQILQLDLSFSWAF-----GVKWSPSGNTLAYVGHNS----MIYFVDDVGPSPLAQNVAFRD--L  248 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~--~  248 (379)
                                  ++++.+.++.+|.+.+.     ...|++++.+|++++.++    .|+|||++.....+.....+.  +
T Consensus       197 ------------Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~  264 (568)
T PTZ00420        197 ------------RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA  264 (568)
T ss_pred             ------------CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc
Confidence                        66778888888876543     234568999999887664    799999996544444443222  2


Q ss_pred             CeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982          249 PLRDVLFVSEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       249 ~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      .+......++|.+++ ++.|+.+++|+....
T Consensus       265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             ceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            222233344577665 568999999998754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.98  E-value=1.2e-29  Score=214.54  Aligned_cols=319  Identities=17%  Similarity=0.251  Sum_probs=236.3

Q ss_pred             cceeccCcceeEEEeCCCCc---EEEEEecCCeEEEEEecCCc-------------------eEEE----------EEec
Q 016982            4 IAVHQFAQCITCHAWSPDHA---MVAFCPNNNEVHIYKLIQEK-------------------WEKL----------HVLQ   51 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~i~~~~~~~-------------------~~~~----------~~~~   51 (379)
                      ..+.+|.+.|.+++|...+.   +||++++|..|+||.+.-..                   +...          ..+.
T Consensus       185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~  264 (764)
T KOG1063|consen  185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM  264 (764)
T ss_pred             EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence            45789999999999987543   88999999999999985321                   0111          2245


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeeEEee---cCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982           52 KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS--EWVPTLVIL---RLNRAALCVQWSPKENKFAVGSGAKTVCICY  126 (379)
Q Consensus        52 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~  126 (379)
                      +|.+.|.++.|+|.+..|++++.|.++.+|...+.  -+.....+.   +........-|+|+++.+++-+..|..++|-
T Consensus       265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk  344 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK  344 (764)
T ss_pred             CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence            89999999999999999999999999999987654  344444332   2335678999999999999999999999998


Q ss_pred             eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccc--------------------------
Q 016982          127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI--------------------------  180 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~--------------------------  180 (379)
                      ......|.....+ .+|...|.+++|+|.|.+|++.+.|-+-|+|-...++.+.                          
T Consensus       345 t~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV  423 (764)
T KOG1063|consen  345 TKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV  423 (764)
T ss_pred             ccCccceeecccc-ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence            4444445444445 8999999999999999999999999888887533100000                          


Q ss_pred             --------cc--------------------------c-----------cCCCccCCcc----------------------
Q 016982          181 --------KE--------------------------K-----------KEGTSSDTKF----------------------  193 (379)
Q Consensus       181 --------~~--------------------------~-----------~~~~~~~~~~----------------------  193 (379)
                              |.                          .           ++.......+                      
T Consensus       424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP  503 (764)
T KOG1063|consen  424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP  503 (764)
T ss_pred             ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence                    00                          0           0000000000                      


Q ss_pred             -----------cceEEEeecCCcceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          194 -----------GEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-----SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       194 -----------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                                 ...++.+.+|...|.+++.+|+|+++|+++..     ..|++|+..+-.+. +.+.+|...|+.++|||
T Consensus       504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-QELEGHSLTVTRLAFSP  582 (764)
T ss_pred             ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-heecccceEEEEEEECC
Confidence                       01122456788889999999999999998743     46999998876654 68899999999999999


Q ss_pred             CCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccc
Q 016982          258 EKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNC  336 (379)
Q Consensus       258 ~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  336 (379)
                      ||++|+ ++.|..+.+|+..++..-.+                         +|.                 ....|..-
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~-------------------------~fa-----------------~~k~HtRI  620 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEF-------------------------RFA-----------------CLKAHTRI  620 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhh-------------------------hhc-----------------cccccceE
Confidence            999887 78899998887533211110                         011                 23679999


Q ss_pred             eeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          337 INCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       337 v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                      |.++. |+|++    .+|||+|.|.+|++|...+.
T Consensus       621 IWdcs-W~pde----~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  621 IWDCS-WSPDE----KYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEEcc-cCccc----ceeEEecCCceEEEEeccCc
Confidence            99999 77776    88999999999999999876

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.98  E-value=6.9e-30  Score=215.93  Aligned_cols=278  Identities=13%  Similarity=0.133  Sum_probs=227.5

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEE-EEEcC-CCCEEEEEeCCCeEEEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSG-IDWSV-RSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~i~vw   81 (379)
                      ..+.+|...|..+++.+ +..++++++||++++|+-..+++.....+.+|.+-|.. +++.+ ++-.|++|+.|.++.+|
T Consensus         8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~   86 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF   86 (745)
T ss_pred             EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence            35789999999999875 45788999999999999988877777888888887776 77775 44569999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ...+..+  ...+.+|+..|.+++...++. +++|+.|.++++|-...-.     ..+ .+|+..|+++..-|.+ .++|
T Consensus        87 ~~~~~~P--~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~-----~~l-~gH~asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen   87 KLSQAEP--LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV-----YSL-QGHTASVWAVASLPEN-TYVT  156 (745)
T ss_pred             ecCCCCc--hhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh-----ccc-CCcchheeeeeecCCC-cEEe
Confidence            9988874  445589999999999888887 9999999999999766533     335 8999999999999988 8999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      |+.|.+|++|.                    .++.+++|.+|...|+.+++-|++. +++++.||.|++|++.. . ++.
T Consensus       157 gsaDKtIklWk--------------------~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g-e-~l~  213 (745)
T KOG0301|consen  157 GSADKTIKLWK--------------------GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG-E-VLL  213 (745)
T ss_pred             ccCcceeeecc--------------------CCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccC-c-eee
Confidence            99999999995                    4888999999999999999998765 66899999999999843 3 557


Q ss_pred             eeeeecCCeeeEEEecCCcE-EEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982          242 NVAFRDLPLRDVLFVSEKMV-IGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN  320 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~-l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
                      .+.+|..-++++...+++.. +.+|.|+++++|..+..  .+.+.                                   
T Consensus       214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~--~q~I~-----------------------------------  256 (745)
T KOG0301|consen  214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC--VQVIT-----------------------------------  256 (745)
T ss_pred             eeeccceEEEEEEecCCCCeEEEecCCceEEEeecCce--EEEEe-----------------------------------
Confidence            88899999999996665554 55899999999986621  12211                                   


Q ss_pred             cccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                 -....|+++.++...      -|++|+.||.||||-..
T Consensus       257 -----------lPttsiWsa~~L~Ng------DIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  257 -----------LPTTSIWSAKVLLNG------DIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             -----------cCccceEEEEEeeCC------CEEEeccCceEEEEEec
Confidence                       122378888855333      38899999999999876

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=4.9e-29  Score=218.43  Aligned_cols=230  Identities=12%  Similarity=0.184  Sum_probs=176.4

Q ss_pred             cceeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEecCCce------EEEEEeccCCCceEEEEEcCCCCE-EEEEeCC
Q 016982            4 IAVHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLIQEKW------EKLHVLQKHDQIVSGIDWSVRSNR-IVTVSHD   75 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d   75 (379)
                      ..+.+|.++|.+++|+|+ +++||+|+.|+.|+|||+.++..      .++..+.+|...|.+++|+|++.. |++++.|
T Consensus        68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D  147 (568)
T PTZ00420         68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD  147 (568)
T ss_pred             EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC
Confidence            356789999999999996 78999999999999999975421      244567899999999999999875 5789999


Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE-----E
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS-----V  150 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~-----~  150 (379)
                      ++|++||+.+++....+   .+...|.+++|+|+|++|++++.|+.|++||++++.   ....+ .+|.+.+..     .
T Consensus       148 gtIrIWDl~tg~~~~~i---~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~---~i~tl-~gH~g~~~s~~v~~~  220 (568)
T PTZ00420        148 SFVNIWDIENEKRAFQI---NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE---IASSF-HIHDGGKNTKNIWID  220 (568)
T ss_pred             CeEEEEECCCCcEEEEE---ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc---EEEEE-ecccCCceeEEEEee
Confidence            99999999998754433   356789999999999999999999999999999876   34555 678765433     3


Q ss_pred             EEcCCCcEEEEeeCCC----eEEEEeccccccccccccCCCccCCcccceEEEee--cCCcceEEEEECCCCCEEEEEcC
Q 016982          151 AWHPNNVFLATTSTDG----KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD--LSFSWAFGVKWSPSGNTLAYVGH  224 (379)
Q Consensus       151 ~~~p~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~  224 (379)
                      .|++++.+|++++.++    .|+|||++                 ...+++..+.  .+.+.+......++|.++++|+.
T Consensus       221 ~fs~d~~~IlTtG~d~~~~R~VkLWDlr-----------------~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        221 GLGGDDNYILSTGFSKNNMREMKLWDLK-----------------NTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             eEcCCCCEEEEEEcCCCCccEEEEEECC-----------------CCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence            3558888999887764    79999972                 2344554443  33333333444556899999999


Q ss_pred             CCeEEEEECCCCCceeeeee--eecCCeeeEEEecCC
Q 016982          225 NSMIYFVDDVGPSPLAQNVA--FRDLPLRDVLFVSEK  259 (379)
Q Consensus       225 d~~i~v~d~~~~~~~~~~~~--~~~~~i~~~~~s~~~  259 (379)
                      |+.|++|++..+. + ..+.  .+..+..+++|.|..
T Consensus       284 D~tIr~~e~~~~~-~-~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        284 DGNCRYYQHSLGS-I-RKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCeEEEEEccCCc-E-EeecccccCCCccceEEcccc
Confidence            9999999997653 1 2222  245778899999953

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.98  E-value=2.6e-30  Score=208.29  Aligned_cols=266  Identities=16%  Similarity=0.224  Sum_probs=207.0

Q ss_pred             ccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCC--------ceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCC
Q 016982           51 QKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGS--------EWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAK  120 (379)
Q Consensus        51 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~  120 (379)
                      ..|.+.|+.+.+.|+. ..+++.+..+.+.|||....        ++.+.+.+.+|...-+.++|++. .-.+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            4488999999999987 45677788899999998643        34455577888888899999994 45789999999


Q ss_pred             eEEEEEeecCCc----eeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccc
Q 016982          121 TVCICYYEQENN----WWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE  195 (379)
Q Consensus       121 ~v~i~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
                      .|++||+.....    ......+ .+|...|..++|+|.. .+|++++.|+.+.|||++.                .+.+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~----------------~~~~  263 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS----------------NTSK  263 (422)
T ss_pred             cEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCC----------------CCCC
Confidence            999999986553    1223334 8999999999999965 7889999999999999721                1455


Q ss_pred             eEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEE
Q 016982          196 QILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMV  272 (379)
Q Consensus       196 ~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i  272 (379)
                      +.....+|.+.|++++|+| ++..||+|+.|++|++||+++....+..+.+|...|..+.|+|.. ..|| +|.|+.+.+
T Consensus       264 ~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  264 PSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNV  343 (422)
T ss_pred             CcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEE
Confidence            6667788999999999999 677889999999999999999888889999999999999999965 4666 778999999


Q ss_pred             EEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccc
Q 016982          273 FAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT  352 (379)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  352 (379)
                      |++...+.-+.   .+......          +. -.|                  +..||...|..+. +.|.. |  .
T Consensus       344 WDls~ig~eq~---~eda~dgp----------pE-llF------------------~HgGH~~kV~Dfs-Wnp~e-P--W  387 (422)
T KOG0264|consen  344 WDLSRIGEEQS---PEDAEDGP----------PE-LLF------------------IHGGHTAKVSDFS-WNPNE-P--W  387 (422)
T ss_pred             EeccccccccC---hhhhccCC----------cc-eeE------------------EecCccccccccc-CCCCC-C--e
Confidence            99775431111   00000000          00 012                  4579999999999 55554 3  7


Q ss_pred             eEEEeecCceEEEEeCC
Q 016982          353 RFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       353 ~l~t~~~Dg~v~iW~~~  369 (379)
                      .|+|+++|+.+.||++.
T Consensus       388 ~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  388 TIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEecCCceEEEeecc
Confidence            99999999999999987

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.8e-31  Score=208.26  Aligned_cols=245  Identities=12%  Similarity=0.136  Sum_probs=199.4

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ++.+|..+|..+.||||.++|++++.+..+.+||+.++  ...+.+. +|...+.+++|.|||..+++|+.|+++..||+
T Consensus       264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg--d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG--DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eeecccCceEEEEECCCCCeEEecCchHheeeccCCcc--hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence            56789999999999999999999999999999999998  4444433 24578999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      +.... ..... -....|.+++..+||+++++.+.|..+++++.++...   ...  .....+|++++.+.+++++++.-
T Consensus       342 Dgn~~-~~W~g-vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d---r~l--ise~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  342 DGNIL-GNWEG-VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD---RGL--ISEEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             Ccchh-hcccc-cccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---hcc--ccccCceeEEEEcCCCcEEEEEc
Confidence            87641 22211 1235699999999999999999999999999887752   222  35567899999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc--eEEEEECC-CCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW--AFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      .+..+++||+                  +....+..+.+|...  +..-+|.- +..++++|++|+.|+||+..+++ ++
T Consensus       415 ~~qei~LWDl------------------~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll  475 (519)
T KOG0293|consen  415 QDQEIHLWDL------------------EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-LL  475 (519)
T ss_pred             ccCeeEEeec------------------chhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc-ee
Confidence            9999999998                  445566666666542  34445554 56899999999999999988877 56


Q ss_pred             eeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecC
Q 016982          241 QNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~  277 (379)
                      ..+.+|...|++++|+|.. .++| ++.|++|+||....
T Consensus       476 ~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  476 AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999999999999999955 5666 77899999998653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.2e-29  Score=192.39  Aligned_cols=269  Identities=18%  Similarity=0.225  Sum_probs=206.6

Q ss_pred             EEEEEecCCeEEEEEecCC----------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE
Q 016982           24 MVAFCPNNNEVHIYKLIQE----------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~   93 (379)
                      .|++|++...|.=+++...          .+.++..+..|.++|++++.+  +.++++|+.|.+|+|||+........+ 
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-
Confidence            4677888777777776432          134466778999999999997  889999999999999999988755544 


Q ss_pred             eecCCCceeEEEECCCCC--EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982           94 ILRLNRAALCVQWSPKEN--KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF  171 (379)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~  171 (379)
                       ..|.+.|+++.|.++-.  .|++|+.||.|.+|+...   |.+...+ .+|.+.|+.++.+|.+++-++.+.|+.+++|
T Consensus        80 -l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen   80 -LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---WELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTW  154 (362)
T ss_pred             -eccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---eEEeeee-cccccccceeEecCCCceEEEEcCCceeeee
Confidence             67899999999998764  899999999999998765   4477788 8999999999999999999999999999999


Q ss_pred             eccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCee
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLR  251 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~  251 (379)
                      |+                  -.++.-..... ....+.+.|+|.|.+++.++.+ .|-+|.+.+.. +...+.. ...+.
T Consensus       155 NL------------------V~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~-v~~~i~~-~~r~l  212 (362)
T KOG0294|consen  155 NL------------------VRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS-VFREIEN-PKRIL  212 (362)
T ss_pred             hh------------------hcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHh-Hhhhhhc-cccce
Confidence            97                  22332222222 1223459999999988887654 58899877654 2233322 24577


Q ss_pred             eEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccc
Q 016982          252 DVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGG  331 (379)
Q Consensus       252 ~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (379)
                      ++.|...+.+++++.++.+.+|+.+.....                          .                    .+.
T Consensus       213 ~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~--------------------------~--------------------~~~  246 (362)
T KOG0294|consen  213 CATFLDGSELLVGGDNEWISLKDTDSDTPL--------------------------T--------------------EFL  246 (362)
T ss_pred             eeeecCCceEEEecCCceEEEeccCCCccc--------------------------e--------------------eee
Confidence            788877777888888888888887652211                          1                    336


Q ss_pred             ccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          332 THVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       332 ~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                      +|.++|.++.++..   |.+.+|+|+|.||.|++||++..
T Consensus       247 AH~~RVK~i~~~~~---~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  247 AHENRVKDIASYTN---PEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cchhheeeeEEEec---CCceEEEEeccCceEEEEEcccc
Confidence            89999999996542   34589999999999999999865

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=3.9e-30  Score=207.30  Aligned_cols=252  Identities=17%  Similarity=0.236  Sum_probs=203.4

Q ss_pred             eccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCc--------eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCC
Q 016982            7 HQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEK--------WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDR   76 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~   76 (379)
                      ..|.+.|+.+.+.|.. ..+|+.+..+.|+|||.....        ..+-..|.+|.+.-.++.|++.. -.|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            5688999999999955 567778889999999987532        23334788999877899999865 4789999999


Q ss_pred             eEEEEeccCCc-----eeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE
Q 016982           77 NSYVWNQEGSE-----WVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV  150 (379)
Q Consensus        77 ~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~  150 (379)
                      +|++||+....     ..+...+.+|...|..++|++ +...|++++.|+.+.|||.++. ........ .+|.+.+.|+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~-~ah~~~vn~~  278 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSV-KAHSAEVNCV  278 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccc-cccCCceeEE
Confidence            99999997543     234455678999999999999 5678999999999999999963 22234444 8999999999


Q ss_pred             EEcCC-CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCCeE
Q 016982          151 AWHPN-NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMI  228 (379)
Q Consensus       151 ~~~p~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i  228 (379)
                      +|+|- +..||+|+.|++|++||+                 +...+++.++.+|...|.++.|+|+ ...|++++.|+.+
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDl-----------------RnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl  341 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDL-----------------RNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL  341 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeec-----------------hhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE
Confidence            99995 578999999999999998                 3667789999999999999999995 6678899999999


Q ss_pred             EEEECCCCC-------------ceeeeeeeecCCeeeEEEecCCcEEE--EEeCCCeEEEEecC
Q 016982          229 YFVDDVGPS-------------PLAQNVAFRDLPLRDVLFVSEKMVIG--VGFDCNPMVFAADE  277 (379)
Q Consensus       229 ~v~d~~~~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i~~~~~  277 (379)
                      .+||+..-.             +++..-.+|...|..+.|+|+..+++  ++.|+.+.||...+
T Consensus       342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            999986422             23344457888899999999877655  55777888887653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=9.4e-31  Score=202.57  Aligned_cols=253  Identities=16%  Similarity=0.211  Sum_probs=203.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe------ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI------LRLNRAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                      ...+.|..|+|||++|++++.||.|.+||..+++....+..      .-+..+|.|++|+.|...+|+|+.||.|++|.+
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            44677899999999999999999999999998865443322      235689999999999999999999999999999


Q ss_pred             ecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982          128 EQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA  207 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  207 (379)
                      .++.   +.+.+...|...|+|+.|+.|+..+++++.|.++++.-+                  +++++++.+.+|...|
T Consensus       293 ~tG~---ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl------------------KSGK~LKEfrGHsSyv  351 (508)
T KOG0275|consen  293 ETGQ---CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL------------------KSGKCLKEFRGHSSYV  351 (508)
T ss_pred             ecch---HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc------------------ccchhHHHhcCccccc
Confidence            9998   566775799999999999999999999999999999986                  8899999999999999


Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee--ecCCeeeEEEecCC--cEEEEEeCCCeEEEEecCCCcEEE
Q 016982          208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF--RDLPLRDVLFVSEK--MVIGVGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~~--~~l~~~~d~~~~i~~~~~~~~~~~  283 (379)
                      +...|.++|.++++++.||+|++|+..+.. +..+++.  ...+|+++..-|.+  .++++...+++++.+..+    ++
T Consensus       352 n~a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----Qv  426 (508)
T KOG0275|consen  352 NEATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QV  426 (508)
T ss_pred             cceEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eE
Confidence            999999999999999999999999988865 4455553  35678888888843  567787888888876554    22


Q ss_pred             EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceE
Q 016982          284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKI  363 (379)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v  363 (379)
                      .+.+...      +                                 ..-.+-|.++  .+    |.|.++...++|+.+
T Consensus       427 VrsfsSG------k---------------------------------REgGdFi~~~--lS----pkGewiYcigED~vl  461 (508)
T KOG0275|consen  427 VRSFSSG------K---------------------------------REGGDFINAI--LS----PKGEWIYCIGEDGVL  461 (508)
T ss_pred             EeeeccC------C---------------------------------ccCCceEEEE--ec----CCCcEEEEEccCcEE
Confidence            2221110      0                                 0112234443  44    445899999999999


Q ss_pred             EEEeCCCccccccC
Q 016982          364 VTWDLESQEDLLNY  377 (379)
Q Consensus       364 ~iW~~~~~~~~~~~  377 (379)
                      +-+...+|..-..+
T Consensus       462 YCF~~~sG~LE~tl  475 (508)
T KOG0275|consen  462 YCFSVLSGKLERTL  475 (508)
T ss_pred             EEEEeecCceeeee
Confidence            99999887765443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5e-28  Score=186.82  Aligned_cols=259  Identities=14%  Similarity=0.151  Sum_probs=194.2

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC--CCeE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG--AKTV  122 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v  122 (379)
                      ++.+.+......|+++.|+++|.++++++.|.++++||..++.....+  ..++-.+..++|....+.++.++.  |.+|
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti--~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI--NSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe--ecccccccEEEEecCCceEEEccCCCCCce
Confidence            344556666779999999999999999999999999999999877766  446677888888777776776666  8899


Q ss_pred             EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982          123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL  202 (379)
Q Consensus       123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (379)
                      +..++..++   ..+.+ .+|...|..++.+|-+..+++++.|++|++||+                  +..++...+..
T Consensus        83 ryLsl~dNk---ylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl------------------R~~~cqg~l~~  140 (311)
T KOG1446|consen   83 RYLSLHDNK---YLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL------------------RVKKCQGLLNL  140 (311)
T ss_pred             EEEEeecCc---eEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEe------------------cCCCCceEEec
Confidence            999999888   67777 999999999999999999999999999999997                  45555555543


Q ss_pred             CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC-Cceeeeee---eecCCeeeEEEecCCcEEEEEeCC-CeEEEEecC
Q 016982          203 SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-SPLAQNVA---FRDLPLRDVLFVSEKMVIGVGFDC-NPMVFAADE  277 (379)
Q Consensus       203 ~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~d~-~~~i~~~~~  277 (379)
                      ...  ...+|+|+|-++|++.....|++||++.- +.....+.   ......+.+.|||||++|..+.+. .+++.+.- 
T Consensus       141 ~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf-  217 (311)
T KOG1446|consen  141 SGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF-  217 (311)
T ss_pred             CCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc-
Confidence            333  34799999999999988889999999864 22223333   235668899999999988855554 44444432 


Q ss_pred             CCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEe
Q 016982          278 TGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS  357 (379)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~  357 (379)
                      .|.  +.......                                         .-.+.+..-+.|.||+    +++++|
T Consensus       218 ~G~--~~~tfs~~-----------------------------------------~~~~~~~~~a~ftPds----~Fvl~g  250 (311)
T KOG1446|consen  218 DGT--VKSTFSGY-----------------------------------------PNAGNLPLSATFTPDS----KFVLSG  250 (311)
T ss_pred             CCc--EeeeEeec-----------------------------------------cCCCCcceeEEECCCC----cEEEEe
Confidence            221  11111000                                         0112233334587776    999999


Q ss_pred             ecCceEEEEeCCCccccccC
Q 016982          358 GLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       358 ~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      +.||+|.+|++++++.+..+
T Consensus       251 s~dg~i~vw~~~tg~~v~~~  270 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGKKVAVL  270 (311)
T ss_pred             cCCCcEEEEEcCCCcEeeEe
Confidence            99999999999998776543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9.1e-30  Score=194.88  Aligned_cols=238  Identities=16%  Similarity=0.202  Sum_probs=182.9

Q ss_pred             CcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      .+.|.+++||| ...+++.++.||+|++|+++......-.....|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            57899999999 55677789999999999998742223355677999999999999999999999999999999999963


Q ss_pred             eeeEEeecCCCceeEEEECCCCC--EEEEEeCCCeEEEEEeecCCceeEEE---------------------------EE
Q 016982           89 VPTLVILRLNRAALCVQWSPKEN--KFAVGSGAKTVCICYYEQENNWWVSK---------------------------LI  139 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~~~~~~~~~~~~~---------------------------~~  139 (379)
                         ..+..|.++|.++.|-+...  .|++|+.|++|+.||.+...+.....                           .+
T Consensus       107 ---~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  107 ---SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             ---eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence               33467999999999987655  89999999999999998754210000                           00


Q ss_pred             ----------eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-----
Q 016982          140 ----------RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-----  204 (379)
Q Consensus       140 ----------~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  204 (379)
                                .....-.++|++..++....+.|+-+|.+.|..+.     .+.           .+.-.+|+.|.     
T Consensus       184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id-----~~~-----------~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID-----DPN-----------PKDNFTFKCHRSTNSV  247 (347)
T ss_pred             CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC-----CCC-----------ccCceeEEEeccCCCC
Confidence                      00112356788888888777888999998888772     110           01122333332     


Q ss_pred             ----cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE--EEeC
Q 016982          205 ----SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG--VGFD  267 (379)
Q Consensus       205 ----~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d  267 (379)
                          ..|++++|+|....|++++.||+..+||-....+ ++..+.|..+|++.+|+.+|.+++  .|+|
T Consensus       248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             CCceEEecceEeecccceEEEecCCceEEEecchhhhh-hhccCcCCCccceeEecCCCCEEEEEeecc
Confidence                3588999999988999999999999999666554 366677899999999999999887  5666

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3.5e-29  Score=202.15  Aligned_cols=289  Identities=11%  Similarity=0.153  Sum_probs=222.5

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCC-EEEEEeCCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSN-RIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      .++|+++.|+|....|++++.|+.++||.++...-..++.+.-...+|.+..|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            5799999999999999999999999999998765566777666678999999999998 899999999999999999875


Q ss_pred             eeeEEeecCC-CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           89 VPTLVILRLN-RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        89 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      .+.-...++. ..+.....+|++++|+..+..|.|.+....++.   ....+  ...+.|..++|+.+++.|+.++.+|.
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e---li~s~--KieG~v~~~~fsSdsk~l~~~~~~Ge  367 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE---LITSF--KIEGVVSDFTFSSDSKELLASGGTGE  367 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh---hhhee--eeccEEeeEEEecCCcEEEEEcCCce
Confidence            5544433333 467788899999999999999999997776665   23333  45678999999999999999999999


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCc-ceEEEEECCCCCEEEEEcCCCeEEEEECCCC-----Cceee
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS-WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-----SPLAQ  241 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-----~~~~~  241 (379)
                      |.+||+                  +...+++.+....+ .-++++.++++.|||+|+..|.|.|||..+.     .+++.
T Consensus       368 V~v~nl------------------~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik  429 (514)
T KOG2055|consen  368 VYVWNL------------------RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK  429 (514)
T ss_pred             EEEEec------------------CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence            999998                  55677777754221 2367888899999999999999999996542     22335


Q ss_pred             eeeeecCCeeeEEEecCCcEEEEEe---CCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIGVGF---DCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~~~~---d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      .+..-...|+++.|++|+++||.++   ++.+++.......   +                       +..|-       
T Consensus       430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T---V-----------------------FsNfP-------  476 (514)
T KOG2055|consen  430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT---V-----------------------FSNFP-------  476 (514)
T ss_pred             hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee---e-----------------------eccCC-------
Confidence            5554567799999999999998433   3445544332211   0                       00110       


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                ....--+.|+||+ |+|.+    .+||.|..+|+|.+|.+.
T Consensus       477 ----------~~n~~vg~vtc~a-FSP~s----G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  477 ----------TSNTKVGHVTCMA-FSPNS----GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ----------CCCCcccceEEEE-ecCCC----ceEEeecCCCceeeEeec
Confidence                      0012345689999 88765    899999999999999874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=3.3e-29  Score=188.01  Aligned_cols=254  Identities=16%  Similarity=0.223  Sum_probs=207.5

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEE
Q 016982           48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICY  126 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~  126 (379)
                      +.+++|...|.+++|+.+|..|++++.|+++.+|+++..+........+|...|-.++|+| ....+++++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999999887666667778999999999998 567999999999999999


Q ss_pred             eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982          127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW  206 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (379)
                      ++..+.   ...+  .....-.-+.|+|+|.+++.++.|..|.+.|.                  ++.+.....+. ...
T Consensus        94 ~r~~k~---~~~i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~------------------r~~~~~~~~~~-~~e  149 (313)
T KOG1407|consen   94 IRSGKC---TARI--ETKGENINITWSPDGEYIAVGNKDDRITFIDA------------------RTYKIVNEEQF-KFE  149 (313)
T ss_pred             eccCcE---EEEe--eccCcceEEEEcCCCCEEEEecCcccEEEEEe------------------cccceeehhcc-cce
Confidence            999883   4443  33344456889999999999999999999996                  34444433332 455


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEE
Q 016982          207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIK  285 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~  285 (379)
                      +..+.|+-++.+++.....|.|.|.....-++ ++.++.|.....++.|+|+|+++| ++.|..+.+|+.++--+.+.. 
T Consensus       150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp-v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-  227 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKP-VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-  227 (313)
T ss_pred             eeeeeecCCCCEEEEecCCceEEEEecccccc-ccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee-
Confidence            78899998888888777889999999887664 589999999999999999999999 567778889887653322221 


Q ss_pred             EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEE
Q 016982          286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVT  365 (379)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~i  365 (379)
                                                                   .-|.=+|..+. |+.+|    ++||+||+|..|-|
T Consensus       228 ---------------------------------------------sRldwpVRTlS-FS~dg----~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  228 ---------------------------------------------SRLDWPVRTLS-FSHDG----RMLASASEDHFIDI  257 (313)
T ss_pred             ---------------------------------------------ccccCceEEEE-eccCc----ceeeccCccceEEe
Confidence                                                         34566899999 98887    99999999999999


Q ss_pred             EeCCCccccccC
Q 016982          366 WDLESQEDLLNY  377 (379)
Q Consensus       366 W~~~~~~~~~~~  377 (379)
                      =++++|..+..+
T Consensus       258 A~vetGd~~~eI  269 (313)
T KOG1407|consen  258 AEVETGDRVWEI  269 (313)
T ss_pred             EecccCCeEEEe
Confidence            888888776554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-28  Score=212.40  Aligned_cols=359  Identities=13%  Similarity=0.095  Sum_probs=256.4

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCE-EEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNR-IVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~vw~   82 (379)
                      .++.++.+.|+++.-+|--..+|.|..+|+|.|++++.+  +.+..++...+.|++++|..||+. +++++..|.+.+||
T Consensus       196 ~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD  273 (910)
T KOG1539|consen  196 YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD  273 (910)
T ss_pred             EEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence            456677899999999999999999999999999999998  788888865699999999999965 57777779999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc-CCCcEEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH-PNNVFLAT  161 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~  161 (379)
                      ++..+.+.... ..|.+.+....|-|....+++++.|+.+++|-++++...+-.-..+.+|..+..++.|. .++..+.+
T Consensus       274 Le~kkl~~v~~-nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils  352 (910)
T KOG1539|consen  274 LEKKKLINVTR-NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS  352 (910)
T ss_pred             cCCCeeeeeee-ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence            99987665553 46889999999999999999999999999998886654221222237999999999998 57899999


Q ss_pred             eeCCCeEEEEecccccccccccc---------CCCc-cCCccc--------------------------ceEEE------
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKK---------EGTS-SDTKFG--------------------------EQILQ------  199 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~---------~~~~-~~~~~~--------------------------~~~~~------  199 (379)
                      ++.|++.+.+++....+......         .... .....-                          ....+      
T Consensus       353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~  432 (910)
T KOG1539|consen  353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK  432 (910)
T ss_pred             cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence            99999999888642111100000         0000 000000                          00000      


Q ss_pred             ------e-----ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee---eeecCCeeeEEEecCCcEEE-E
Q 016982          200 ------L-----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV---AFRDLPLRDVLFVSEKMVIG-V  264 (379)
Q Consensus       200 ------~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~-~  264 (379)
                            +     +.....+++++.+++|++.+.|...|.|-+|+++++-.. ..+   +.|..+|++++...-++.++ +
T Consensus       433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~n~~~vsa  511 (910)
T KOG1539|consen  433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGTNRLLVSA  511 (910)
T ss_pred             ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCCCceEEEc
Confidence                  1     011245889999999999999999999999999987533 444   47899999999988777665 8


Q ss_pred             EeCCCeEEEEecCCCcEEEEEEecccccC--CCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeee
Q 016982          265 GFDCNPMVFAADETGIWTFIKFLDERKTS--SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVP  342 (379)
Q Consensus       265 ~~d~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  342 (379)
                      +.+|-+.+|+.....   +...++.....  ....+.+..+..+...|    ..--....+....+.+.||.+.|++++ 
T Consensus       512 ~~~Gilkfw~f~~k~---l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf----~I~vvD~~t~kvvR~f~gh~nritd~~-  583 (910)
T KOG1539|consen  512 GADGILKFWDFKKKV---LKKSLRLGSSITGIVYHRVSDLLAIALDDF----SIRVVDVVTRKVVREFWGHGNRITDMT-  583 (910)
T ss_pred             cCcceEEEEecCCcc---eeeeeccCCCcceeeeeehhhhhhhhcCce----eEEEEEchhhhhhHHhhccccceeeeE-
Confidence            899999999987653   22222111111  00011111111111111    001122234456667899999999999 


Q ss_pred             ecccCCcccceEEEeecCceEEEEeCCCccccccCC
Q 016982          343 LREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       343 ~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~~  378 (379)
                      |++||    ++|++++.|++||+||+.++.++-.+.
T Consensus       584 FS~Dg----rWlisasmD~tIr~wDlpt~~lID~~~  615 (910)
T KOG1539|consen  584 FSPDG----RWLISASMDSTIRTWDLPTGTLIDGLL  615 (910)
T ss_pred             eCCCC----cEEEEeecCCcEEEEeccCcceeeeEe
Confidence            88877    999999999999999999998876543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.4e-28  Score=178.10  Aligned_cols=246  Identities=18%  Similarity=0.221  Sum_probs=197.5

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCce---EEEEEeccCCCceEEEEEcCC----CCEEEEEe-CCCeE
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW---EKLHVLQKHDQIVSGIDWSVR----SNRIVTVS-HDRNS   78 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i   78 (379)
                      ++|.+.|+|.+|+|+|.+||+|++|.+|++........   ..-..+.-|.+.|..++|..+    +..|++++ .|..|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            56899999999999999999999999999977654311   123456678999999999643    45677765 46677


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecC-----CcCEEEEEE
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRH-----DSSVTSVAW  152 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~-----~~~v~~~~~  152 (379)
                      ++-|...++...  .+.+|.+-|.++ ++-++-++++|+.|.+|++||++-..   ....+. .-|     ...|.+++.
T Consensus       166 y~tdc~~g~~~~--a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~---~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  166 YITDCGRGQGFH--ALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS---CVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             EEeecCCCCcce--eecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc---eeeeccCcccCCCcccceeEEEEE
Confidence            777888887444  447899888876 44468899999999999999999876   334331 111     257899999


Q ss_pred             cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982          153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD  232 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d  232 (379)
                      .|.|++|++|-.|....+||+                  +-+..++.+..|...|.++.|+|...|+++++.|..|++-|
T Consensus       240 dpsgrll~sg~~dssc~lydi------------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltd  301 (350)
T KOG0641|consen  240 DPSGRLLASGHADSSCMLYDI------------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD  301 (350)
T ss_pred             CCCcceeeeccCCCceEEEEe------------------eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence            999999999999999999998                  67889999999999999999999999999999999999999


Q ss_pred             CCCCC---ceeeeeeeecCCeeeEEEecCC-cEEEEEeCCCeEEEEec
Q 016982          233 DVGPS---PLAQNVAFRDLPLRDVLFVSEK-MVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       233 ~~~~~---~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~d~~~~i~~~~  276 (379)
                      ++...   -.+..+..|...+..+.|.|.. .+|.++.|.++.+|.++
T Consensus       302 lqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  302 LQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            87642   1234455688888899999965 57778899999998764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1e-28  Score=197.92  Aligned_cols=246  Identities=14%  Similarity=0.187  Sum_probs=203.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.-.|+.+.|+|+...+++++.|..|++|.....  ........|..+|+.+..+|.|.||++++.|++..+.|+.
T Consensus       256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hccCcceEEEEEEeccchhheeecCCcceEEeeccccc--cCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence            46889999999999999999999999999999998876  4666778899999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ++............-.+++.+|+|||..|.+|..|+.|++||+.....   ...+ .+|.++|..++|+.+|.+|++++.
T Consensus       334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~F-pght~~vk~i~FsENGY~Lat~ad  409 (506)
T KOG0289|consen  334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKF-PGHTGPVKAISFSENGYWLATAAD  409 (506)
T ss_pred             CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccC-CCCCCceeEEEeccCceEEEEEec
Confidence            998665554322335689999999999999999999999999988773   4455 789999999999999999999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecC-CcceEEEEECCCCCEEEEEcCCCeEEEEECCCC-Cceeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-SPLAQN  242 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-~~~~~~  242 (379)
                      |+.|++||+                  +..+...++... ...+.++.|.+.|.+|+.++.|=.|++++-.+. -..+..
T Consensus       410 d~~V~lwDL------------------RKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~  471 (506)
T KOG0289|consen  410 DGSVKLWDL------------------RKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE  471 (506)
T ss_pred             CCeEEEEEe------------------hhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence            999999997                  444455555432 236999999999999999988877777763332 223455


Q ss_pred             eeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          243 VAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      +..|.+..+.+.|....++++ ++.|..++++.
T Consensus       472 ~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  472 LADHSGLSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             hhhcccccceeeecccceEEeeccchhheEEee
Confidence            666777889999999889998 55666666554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.97  E-value=1.8e-29  Score=206.01  Aligned_cols=285  Identities=12%  Similarity=0.123  Sum_probs=227.9

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-eEEEEEecc--CCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-WEKLHVLQK--HDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      ...|..-|.++.+|...+.+.+|+. |.|+|||+.... ..++..|..  ....|.++..+|||+.|++|+.-.++.|||
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            4568899999999999999999976 899999997531 133444432  356799999999999999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +.........++....-.+.+++.+||.+..++++.||.|.|||+....   +.+.+ .+|.+.+.||..++||..|-+|
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~---~Vrqf-qGhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT---LVRQF-QGHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---eeecc-cCCCCCceeEEecCCCceeecC
Confidence            9877633333333334567889999999999999999999999999877   67777 8999999999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      +-|.+|+.||+                  +.+..+..... ...|.++..+|++.+|+.|-+++.+.|.......+  ..
T Consensus       570 GlDntvRcWDl------------------regrqlqqhdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--yq  628 (705)
T KOG0639|consen  570 GLDNTVRCWDL------------------REGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--YQ  628 (705)
T ss_pred             CCccceeehhh------------------hhhhhhhhhhh-hhhheecccCCCccceeeecccCcEEEEecCCccc--ee
Confidence            99999999997                  44544444332 45699999999999999999999999888666543  55


Q ss_pred             eeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccc
Q 016982          243 VAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGND  321 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (379)
                      +..|..-|.++.|.+.|++++ +|.|+-+..|....+.  .+                          |.          
T Consensus       629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa--si--------------------------Fq----------  670 (705)
T KOG0639|consen  629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SI--------------------------FQ----------  670 (705)
T ss_pred             ecccccEEEEEEecccCceeeecCchhhhhhccCcccc--ce--------------------------ee----------
Confidence            666889999999999999888 7888888887755332  11                          10          


Q ss_pred             ccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          322 AVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       322 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                               ..-...|.++. .+.+.    ++|+|||.|....+|.+
T Consensus       671 ---------skE~SsVlsCD-IS~dd----kyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  671 ---------SKESSSVLSCD-ISFDD----KYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ---------ccccCcceeee-eccCc----eEEEecCCCcceEEEEE
Confidence                     12445799999 66665    89999999998888865

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.8e-30  Score=213.53  Aligned_cols=251  Identities=12%  Similarity=0.104  Sum_probs=206.0

Q ss_pred             ccCccee---EEEeC-CCCcEEEEEecCCeEEEEEecCCce----EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982            8 QFAQCIT---CHAWS-PDHAMVAFCPNNNEVHIYKLIQEKW----EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY   79 (379)
Q Consensus         8 ~~~~~i~---~~~~s-~~~~~l~~~~~dg~i~i~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (379)
                      +|...|.   ++..+ |.+++|++|++||.|++|+......    .....++.|.+.|+.++..-+++.|++++.|-+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK   98 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK   98 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence            3444555   44554 4667899999999999999875422    24677899999999999999999999999999999


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEE-CCCCCEEEEEeCCCeEEEEEeecCCc-------eeEEEEEeecCCcCEEEEE
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQW-SPKENKFAVGSGAKTVCICYYEQENN-------WWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~v~i~~~~~~~~-------~~~~~~~~~~~~~~v~~~~  151 (379)
                      +|+...+.....-.+..|...|.|+++ .++..++|+|+-|+.|.+||++++..       ......+..++...|++++
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA  178 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA  178 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence            999987742222234679999999999 77889999999999999999997631       0011122137889999999


Q ss_pred             EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982          152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~  231 (379)
                      .++.|..+++|+..+.+++||.                  ++.+.+..+.+|...|..+..++||..+++++.||+|++|
T Consensus       179 ~N~t~t~ivsGgtek~lr~wDp------------------rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  179 MNQTGTIIVSGGTEKDLRLWDP------------------RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW  240 (735)
T ss_pred             cCCcceEEEecCcccceEEecc------------------ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence            9999999999999999999996                  7888899999999999999999999999999999999999


Q ss_pred             ECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      |+...+ ++.++..|...|+++..+|+-..+. ++.|+.++.-++.+
T Consensus       241 dLgqQr-Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  241 DLGQQR-CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             eccccc-eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            998866 6688899999999999998866665 66777776655443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=211.39  Aligned_cols=324  Identities=11%  Similarity=0.126  Sum_probs=242.6

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEE-cCCCCEEEEEeCCCeEEEEec
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW-SVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .+..|.+.|..++...+++.|++++.|-+|++|+...+..-+..++..|.+.|.|+++ .++..++|+|+-|+.|.+||+
T Consensus        68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi  147 (735)
T KOG0308|consen   68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI  147 (735)
T ss_pred             hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence            4677899999999999999999999999999999987644577889999999999999 788889999999999999999


Q ss_pred             cCCc--eee------eEEee-cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           84 EGSE--WVP------TLVIL-RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        84 ~~~~--~~~------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      +++.  ...      .-... ++...|++++-++.|..|++|+..+.+++||.++.+.   .-.+ .+|...|.++-.++
T Consensus       148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k---imkL-rGHTdNVr~ll~~d  223 (735)
T KOG0308|consen  148 NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK---IMKL-RGHTDNVRVLLVND  223 (735)
T ss_pred             cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc---eeee-eccccceEEEEEcC
Confidence            9772  111      11112 5678899999999999999999999999999999874   3334 69999999999999


Q ss_pred             CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      ||+.+++++.||+|++||+                  ...+|+.++..|...|+++..+|+-..+.+|+.||.|..=|++
T Consensus       224 DGt~~ls~sSDgtIrlWdL------------------gqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  224 DGTRLLSASSDGTIRLWDL------------------GQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             CCCeEeecCCCceEEeeec------------------cccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            9999999999999999997                  6778999999999999999999999999999999999999999


Q ss_pred             CCCceeeeeeeecCCeeeEEEec-CCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecc
Q 016982          235 GPSPLAQNVAFRDLPLRDVLFVS-EKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQ  313 (379)
Q Consensus       235 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
                      +.... ..+.....+|..+.... +..+-++..|..|.-|.....-.....+.++                    .+.+.
T Consensus       286 n~~~~-tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~--------------------~~~T~  344 (735)
T KOG0308|consen  286 NPAKS-TLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLD--------------------FFSTD  344 (735)
T ss_pred             Cchhh-eEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCC--------------------ccccc
Confidence            87544 33333567888887774 3445677888888877654321111100000                    00000


Q ss_pred             ccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccCC
Q 016982          314 SKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~~  378 (379)
                      ...-.......+.. .+.|- ..|...++..     +.+.++|=..+|.+.+||+-....+..|+
T Consensus       345 ~~~~~~~~~~tp~~-vi~Gg-~ai~k~~mL~-----dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  345 SNNHSCDLTNTPDS-VIPGG-AAIKKHAMLN-----DKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             CCCccccccCCCce-eccCc-hhhhhhhhhc-----CcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            00000000000111 11111 1344444332     33899999999999999998877766554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.7e-28  Score=189.02  Aligned_cols=243  Identities=15%  Similarity=0.196  Sum_probs=193.8

Q ss_pred             ccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCC--EEEEEeCCCeEEE
Q 016982            3 AIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSN--RIVTVSHDRNSYV   80 (379)
Q Consensus         3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v   80 (379)
                      -..+..|.++|++++.  ++.++|+|+.|.+|+|||+...  ..+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~--~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR--KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccch--hhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            4456778999999998  4799999999999999999987  67788888999999999998764  8999999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      |+...-.+...+  .+|.+.|+.++.+|.+++.++.+.|+.+++||+-.++...+.+   ..+.  -+.+.|+|.|.+++
T Consensus       112 w~~~~W~~~~sl--K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~---L~~~--at~v~w~~~Gd~F~  184 (362)
T KOG0294|consen  112 WRVGSWELLKSL--KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN---LKNK--ATLVSWSPQGDHFV  184 (362)
T ss_pred             EEcCCeEEeeee--cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec---cCCc--ceeeEEcCCCCEEE
Confidence            998877655554  7899999999999999999999999999999998887432222   2233  34499999999998


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      .+..+ .|-+|.+                  ........+.. ...+.++.|- ++..|++|+.|+.|.+||..... +.
T Consensus       185 v~~~~-~i~i~q~------------------d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~-~~  242 (362)
T KOG0294|consen  185 VSGRN-KIDIYQL------------------DNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDT-PL  242 (362)
T ss_pred             EEecc-EEEEEec------------------ccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCc-cc
Confidence            88766 4788876                  22232222222 2345666664 56788899999999999988755 44


Q ss_pred             eeeeeecCCeeeEEEe--cCCcEEE-EEeCCCeEEEEecCC
Q 016982          241 QNVAFRDLPLRDVLFV--SEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s--~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      ..+.+|...|.++.+-  |++.+|+ +++||.|++|+.+-.
T Consensus       243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            7888999999999853  4677777 889999999998743

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=9e-29  Score=199.67  Aligned_cols=262  Identities=14%  Similarity=0.133  Sum_probs=209.4

Q ss_pred             EEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee----ee----------EEe--ecCCCceeEEEECCCC
Q 016982           47 LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV----PT----------LVI--LRLNRAALCVQWSPKE  110 (379)
Q Consensus        47 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~----~~----------~~~--~~~~~~v~~~~~~~~~  110 (379)
                      ...+..|.-+|.+++++|++.+.++++.+++|.-|++.++...    +.          ...  ..|...+.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4566779999999999999999999999999999999877522    11          001  2577889999999999


Q ss_pred             CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccC
Q 016982          111 NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSD  190 (379)
Q Consensus       111 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  190 (379)
                      ++|++|+.|..|.||+.++.+.   .+.+ .+|.+.|.+++|-.....|++++.|+.+++|++                 
T Consensus       215 kylatgg~d~~v~Iw~~~t~eh---v~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~-----------------  273 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEH---VKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSI-----------------  273 (479)
T ss_pred             cEEEecCCCceEEEecCcccch---hhcc-cccccceeeeeeecCccceeeeecCCceEEEeh-----------------
Confidence            9999999999999999999883   5556 899999999999988889999999999999997                 


Q ss_pred             CcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCe
Q 016982          191 TKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNP  270 (379)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~  270 (379)
                       .....+.++.+|...|.++.-..-++.+-+|+.|+++++|++....+  ..+.++.+.+-+++|-.+..++.++.+|.|
T Consensus       274 -~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In~~HfvsGSdnG~I  350 (479)
T KOG0299|consen  274 -DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFINDEHFVSGSDNGSI  350 (479)
T ss_pred             -hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEecccceeeccCCceE
Confidence             55667788899999999998888888888888999999999966554  345567889999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcc
Q 016982          271 MVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSR  350 (379)
Q Consensus       271 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  350 (379)
                      .+|.+-.....-.........             +.+                     ....+.-.|+++++.     |.
T Consensus       351 aLWs~~KKkplf~~~~AHgv~-------------~~~---------------------~~~~~~~Witsla~i-----~~  391 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHGVI-------------PEL---------------------DPVNGNFWITSLAVI-----PG  391 (479)
T ss_pred             EEeeecccCceeEeecccccc-------------CCc---------------------cccccccceeeeEec-----cc
Confidence            999876543222211110000             000                     001233579999965     34


Q ss_pred             cceEEEeecCceEEEEeCCCc
Q 016982          351 ITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       351 ~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                      ..++|||+.||.||+|.+.++
T Consensus       392 sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  392 SDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             CceEEecCCCCceEEEEecCC
Confidence            489999999999999999886

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.6e-28  Score=197.01  Aligned_cols=248  Identities=13%  Similarity=0.132  Sum_probs=204.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceE---------------EEEEe-ccCCCceEEEEEcCCCCE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE---------------KLHVL-QKHDQIVSGIDWSVRSNR   68 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~---------------~~~~~-~~~~~~v~~~~~~~~~~~   68 (379)
                      .+..|.-+|+|++++|++++.++++.+++|.=|++.++.-.               +...- ..|...+.+++.++||++
T Consensus       137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky  216 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY  216 (479)
T ss_pred             eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence            35678999999999999999999999999999998776311               01111 378889999999999999


Q ss_pred             EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           69 IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        69 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      |++|+.|..|.||+.++.+.+..+  ..|.+.|.+++|-.....+++++.|+.+++|+++...   ..+.+ .+|++.|.
T Consensus       217 latgg~d~~v~Iw~~~t~ehv~~~--~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s---~vetl-yGHqd~v~  290 (479)
T KOG0299|consen  217 LATGGRDRHVQIWDCDTLEHVKVF--KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS---YVETL-YGHQDGVL  290 (479)
T ss_pred             EEecCCCceEEEecCcccchhhcc--cccccceeeeeeecCccceeeeecCCceEEEehhHhH---HHHHH-hCCcccee
Confidence            999999999999999999866654  7899999999999888899999999999999998876   45566 79999999


Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeE
Q 016982          149 SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI  228 (379)
Q Consensus       149 ~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i  228 (379)
                      .+......+.+-+|+.|+++++|++.                   .+....+.++.+.+-+++|-.+. .+++|+.+|.|
T Consensus       291 ~IdaL~reR~vtVGgrDrT~rlwKi~-------------------eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~I  350 (479)
T KOG0299|consen  291 GIDALSRERCVTVGGRDRTVRLWKIP-------------------EESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSI  350 (479)
T ss_pred             eechhcccceEEeccccceeEEEecc-------------------ccceeeeeCCCCCeeeEEEeccc-ceeeccCCceE
Confidence            99988888888888899999999971                   22233456778889999998654 57899999999


Q ss_pred             EEEECCCCCceeeeeeeec-----------CCeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982          229 YFVDDVGPSPLAQNVAFRD-----------LPLRDVLFVSEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~~~-----------~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      .+|++.+.+++...-..|+           ..|++++..|...+++ ++.+|.+++|...++
T Consensus       351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            9999988776544333331           2688999999999998 567999999998764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.3e-28  Score=186.43  Aligned_cols=244  Identities=15%  Similarity=0.215  Sum_probs=184.5

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      -.|+.|++.|.+||+|+.||.|.|||+.+-  ..-+.+.+|..+|++++||++|++|+|++.|..|.+||+..+.+...+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            679999999999999999999999999986  677889999999999999999999999999999999999999877766


Q ss_pred             EeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC----cCEEEEEEcCCCcEEEEeeCCCe
Q 016982           93 VILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD----SSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      .   ..++|+.+.|+|.. +..++.-.+..-.+.++..+.    ...+.....    ..-.+..|.+.|+++++|...|.
T Consensus       104 r---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~----h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk  176 (405)
T KOG1273|consen  104 R---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK----HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK  176 (405)
T ss_pred             E---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc----eeeccCCCccccccccccccccCCCCEEEEecCcce
Confidence            5   47899999999943 334444344555565665433    233311111    12233468899999999999999


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCC-cceEEEEECCCCCEEEEEcCCCeEEEEECCCC------Cce-
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP------SPL-  239 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~------~~~-  239 (379)
                      +.++|.                  .+.+++..++... ..|..+.++..|++|+..+.|..|+.|+++.-      .++ 
T Consensus       177 llv~~a------------------~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e  238 (405)
T KOG1273|consen  177 LLVYDA------------------ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE  238 (405)
T ss_pred             EEEEec------------------chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC
Confidence            999996                  6678888776555 67899999999999999999999999987631      111 


Q ss_pred             -eeeeee--ecCCeeeEEEecCCcEEEEEe--CCCeEEEEecCCCcEEE
Q 016982          240 -AQNVAF--RDLPLRDVLFVSEKMVIGVGF--DCNPMVFAADETGIWTF  283 (379)
Q Consensus       240 -~~~~~~--~~~~i~~~~~s~~~~~l~~~~--d~~~~i~~~~~~~~~~~  283 (379)
                       .+.++.  ....=.+++|+.+|.|+++++  ...+++|....+.+.++
T Consensus       239 ~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI  287 (405)
T KOG1273|consen  239 PEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI  287 (405)
T ss_pred             hhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee
Confidence             011110  122345789999999998654  34688888665544443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.3e-29  Score=200.39  Aligned_cols=238  Identities=15%  Similarity=0.159  Sum_probs=195.3

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      +|.+..++|+++.|.++++.+++++.|+.+++|++...  +...+|.+|.+.|+++.|......+++++.|.+|++||+.
T Consensus       214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~  291 (459)
T KOG0288|consen  214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ  291 (459)
T ss_pred             hhhccCCCcceeeecCCCceEEeecCCCceeeeeccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence            45667789999999999999999999999999999886  7889999999999999999877779999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ...+......   ...+.+|..+  ...+++|-.|+.|++||.+...   .....  ...+.|+++..++++..+.+++.
T Consensus       292 k~~C~kt~l~---~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~---~~~sv--~~gg~vtSl~ls~~g~~lLsssR  361 (459)
T KOG0288|consen  292 KAYCSKTVLP---GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSAD---KTRSV--PLGGRVTSLDLSMDGLELLSSSR  361 (459)
T ss_pred             hhheeccccc---cccccceEec--ceeeeecccccceEEEeccCCc---eeeEe--ecCcceeeEeeccCCeEEeeecC
Confidence            9876665532   3555666665  5578899999999999999887   34443  44459999999999999999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecC----CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS----FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      |.++.+.|+                  ++.+....+...    ....+.+.|||++.|+++|+.||.|+||++.+++ +.
T Consensus       362 Ddtl~viDl------------------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK-lE  422 (459)
T KOG0288|consen  362 DDTLKVIDL------------------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK-LE  422 (459)
T ss_pred             CCceeeeec------------------ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce-EE
Confidence            999999997                  444444444322    2347899999999999999999999999999876 44


Q ss_pred             eeeeeecC--CeeeEEEecCCcEEE-EEeCCCeEEE
Q 016982          241 QNVAFRDL--PLRDVLFVSEKMVIG-VGFDCNPMVF  273 (379)
Q Consensus       241 ~~~~~~~~--~i~~~~~s~~~~~l~-~~~d~~~~i~  273 (379)
                      ..+.....  .|++++|+|.|..++ ++.+..+.+|
T Consensus       423 ~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  423 KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            55554443  599999999998776 6666677776

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.1e-28  Score=182.28  Aligned_cols=249  Identities=13%  Similarity=0.127  Sum_probs=199.1

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----CCeE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-----DRNS   78 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i   78 (379)
                      .++.+|.+.|+|++.+.+.+.+++|+.|.++++||++++  +.+..++. ..+|..+.|+++|++++.+..     .+.|
T Consensus        46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG--k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v  122 (327)
T KOG0643|consen   46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG--KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFV  122 (327)
T ss_pred             eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC--cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence            467899999999999999999999999999999999998  67777763 568999999999998877653     3569


Q ss_pred             EEEeccCCc-----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982           79 YVWNQEGSE-----WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH  153 (379)
Q Consensus        79 ~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  153 (379)
                      .++|++...     ..+.+.+..+...++.+-|.|-+++|++|..||.|..||.+++..  ..... ..|...|+.++++
T Consensus       123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--~v~s~-~~h~~~Ind~q~s  199 (327)
T KOG0643|consen  123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--LVDSD-EEHSSKINDLQFS  199 (327)
T ss_pred             EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--eeech-hhhcccccccccc
Confidence            999987331     113344456678999999999999999999999999999998763  33333 6788999999999


Q ss_pred             CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE--
Q 016982          154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV--  231 (379)
Q Consensus       154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~--  231 (379)
                      ||..++++++.|.+-++||.                  .+-+.++++.. ..+|++.+++|....++.++.....-|=  
T Consensus       200 ~d~T~FiT~s~Dttakl~D~------------------~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT  260 (327)
T KOG0643|consen  200 RDRTYFITGSKDTTAKLVDV------------------RTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTT  260 (327)
T ss_pred             CCcceEEecccCccceeeec------------------cceeeEEEeee-cccccceecccccceEEecCCceeeeeeee
Confidence            99999999999999999996                  66777777765 5789999999987777776543221111  


Q ss_pred             ECCCC-----------CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          232 DDVGP-----------SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       232 d~~~~-----------~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      +.+.+           ++.+..+++|-+||++++|+|+|+..+ +|.||.+++...+.
T Consensus       261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            11111           123456788999999999999999887 67888998877654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-27  Score=183.52  Aligned_cols=270  Identities=16%  Similarity=0.270  Sum_probs=212.6

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEec--CCceEEEEEeccCCCceEEEEEcCC--CCEEEEEeCCCeEEEE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLI--QEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVW   81 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw   81 (379)
                      ..+|.+-|.++.|.+.|+++|+|+.|++|+|||..  ++++.+....+.|.+.|..+.|.+-  |+.+|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            46789999999999999999999999999999964  4568899999999999999999764  7999999999999999


Q ss_pred             ecc-------CCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEEEeecCC---ceeEEEEEe------ecC
Q 016982           82 NQE-------GSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCICYYEQEN---NWWVSKLIR------KRH  143 (379)
Q Consensus        82 ~~~-------~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~------~~~  143 (379)
                      .-.       +.+++....+......|+++.|.|  -|-.+|+++.||.++||+.-...   .|.+...+.      ..+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            752       235666666677889999999999  57899999999999999765432   222222221      246


Q ss_pred             CcCEEEEEEcCC---CcEEEEeeCC-----CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC
Q 016982          144 DSSVTSVAWHPN---NVFLATTSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS  215 (379)
Q Consensus       144 ~~~v~~~~~~p~---~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  215 (379)
                      ..+..|+.|+|.   ..+|+.|+.+     +.++||....              ..+....+.++..|..+|+.++|.|+
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--------------~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--------------NGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--------------CcceeeeehhcCCCCCcceeeeeccc
Confidence            678899999985   3678888765     4788886410              01233456677899999999999995


Q ss_pred             ----CCEEEEEcCCCeEEEEECCCC-------------------CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeE
Q 016982          216 ----GNTLAYVGHNSMIYFVDDVGP-------------------SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPM  271 (379)
Q Consensus       216 ----~~~l~~~~~d~~i~v~d~~~~-------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~  271 (379)
                          -..||+++.|| |+||.+...                   -+.+..+..|++.|+.+.|.-.|..|+ +|.||.++
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR  313 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR  313 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence                34689999999 999987631                   113345667899999999999999998 78999999


Q ss_pred             EEEecCCCcEEEEEEeccc
Q 016982          272 VFAADETGIWTFIKFLDER  290 (379)
Q Consensus       272 i~~~~~~~~~~~~~~~~~~  290 (379)
                      +|..+-...|+....+...
T Consensus       314 LWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  314 LWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             ehhhhhhhhheeeeEEecc
Confidence            9999888888877665443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.5e-27  Score=198.02  Aligned_cols=284  Identities=15%  Similarity=0.251  Sum_probs=220.9

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      .++|+++||+.+.+.||.+-.+|.|.||++..+ +-....+.++. ..|.+++|++ +..|++.+.+|.|.-||+.+.+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence            589999999999999999999999999999986 66666676664 5799999995 55788889999999999999985


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                      ...+  ....+.|++++.+|.+..+++|++||.+..++...+.- ...+.+ ....+.+.+++|+|++..++.|+.||.|
T Consensus       103 ~~~~--d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I-~~~r~l-~rq~sRvLslsw~~~~~~i~~Gs~Dg~I  178 (691)
T KOG2048|consen  103 KYNI--DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI-TYKRSL-MRQKSRVLSLSWNPTGTKIAGGSIDGVI  178 (691)
T ss_pred             eEEe--cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE-EEEeec-ccccceEEEEEecCCccEEEecccCceE
Confidence            4444  56789999999999999999999999776666655542 112233 4556899999999999999999999999


Q ss_pred             EEEeccccccccccccCCCccCCcccceEEEe-----e---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-----D---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      ++||.                  ..+..++..     .   ....-|+++.|-.++ .+++|...|+|.+||...+. ++
T Consensus       179 riwd~------------------~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT-Li  238 (691)
T KOG2048|consen  179 RIWDV------------------KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT-LI  238 (691)
T ss_pred             EEEEc------------------CCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc-hh
Confidence            99997                  334433311     1   122347888887665 58899999999999988776 56


Q ss_pred             eeeeeecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCc-EEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          241 QNVAFRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGI-WTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      +....|...|.+++..+++. ++.+|.|+.+..|.....+. |.....                                
T Consensus       239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~--------------------------------  286 (691)
T KOG2048|consen  239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSR--------------------------------  286 (691)
T ss_pred             hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeecc--------------------------------
Confidence            88888999999999999855 45588999998888776543 443221                                


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                 -..|...|.+++++.       ..+++||.|+.+.+=...
T Consensus       287 -----------r~~h~hdvrs~av~~-------~~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  287 -----------RDLHAHDVRSMAVIE-------NALISGGRDFTLAICSSR  319 (691)
T ss_pred             -----------ccCCcccceeeeeec-------ceEEecceeeEEEEcccc
Confidence                       145777888888652       478888888887775544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=5.1e-28  Score=211.38  Aligned_cols=240  Identities=15%  Similarity=0.094  Sum_probs=208.3

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.+.|.++++..-+.+|++|+.|.++++||..++  ++...+.+|...|.++...  ..++++|+.|.+|++|+++
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence            37899999999999877889999999999999999988  8999999999999999876  4578889999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ++.++..+  .+|..+|.++..+  +.++++|+.|+.|++||+.+.+   +.+.+ .+|...|.++.+.+. .++++|+.
T Consensus       320 n~~~l~l~--~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~---cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~  390 (537)
T KOG0274|consen  320 NGACLNLL--RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK---CLKSL-SGHTGRVYSLIVDSE-NRLLSGSL  390 (537)
T ss_pred             CcceEEEe--ccccccEEEEEec--CCEEEEEecCceEEEEEhhhce---eeeee-cCCcceEEEEEecCc-ceEEeeee
Confidence            99877666  4599999999998  8899999999999999999877   67777 889999999988654 89999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCccc-ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFG-EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      |+.|++||+                  ... +++..+.+|..-+..+.+  .+++|++++.|+.|++||...++ +.+.+
T Consensus       391 D~~IkvWdl------------------~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~-~~~~~  449 (537)
T KOG0274|consen  391 DTTIKVWDL------------------RTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE-CLRTL  449 (537)
T ss_pred             ccceEeecC------------------CchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCc-eeeee
Confidence            999999997                  555 899999999888866654  57899999999999999988876 45777


Q ss_pred             ee-ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982          244 AF-RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG  279 (379)
Q Consensus       244 ~~-~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~  279 (379)
                      .+ |...|..+++. +..+++++.++.+.+|+.....
T Consensus       450 ~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  450 EGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             ccCCcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence            77 56778888876 5667779999999999877543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.5e-29  Score=212.55  Aligned_cols=290  Identities=14%  Similarity=0.155  Sum_probs=218.7

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceE--EEEEeccCC---CceEEEEEcC-CCCEEEEEeCCCeEEEEec
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE--KLHVLQKHD---QIVSGIDWSV-RSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~--~~~~~~~~~---~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~   83 (379)
                      +....+++.+++-..++.+++ ..++||........  +...+..-.   -.+..+.|+. +.++|+|++.+|.|.+||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            566778888898888888876 47888887654221  111111111   1345678874 3589999999999999999


Q ss_pred             cCC-ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEE
Q 016982           84 EGS-EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLA  160 (379)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~  160 (379)
                      ... +......+..|...+.++.|++ ..++|++|+.||+|++||++....   ...+ .+....|.+++|+|. +..|+
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S---~~t~-~~nSESiRDV~fsp~~~~~F~  193 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS---KSTF-RSNSESIRDVKFSPGYGNKFA  193 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc---cccc-cccchhhhceeeccCCCceEE
Confidence            872 1112233477999999999998 567899999999999999998873   3444 677889999999995 58999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      ++.+.|.+++||+                 .+..++...+..|.++|.++.|+|++.+||+|+.|+.|+|||+.+++...
T Consensus       194 s~~dsG~lqlWDl-----------------Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  194 SIHDSGYLQLWDL-----------------RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             EecCCceEEEeec-----------------cCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            9999999999998                 46678888999999999999999999999999999999999998664322


Q ss_pred             eeeeeecCCeeeEEEecCCc-EEEE---EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccc
Q 016982          241 QNVAFRDLPLRDVLFVSEKM-VIGV---GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKY  316 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~-~l~~---~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (379)
                      ...-....++..+.|-|+.+ .|++   ..|-.|+||+.....                            .++.     
T Consensus       257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY----------------------------IP~~-----  303 (839)
T KOG0269|consen  257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY----------------------------IPYA-----  303 (839)
T ss_pred             eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc----------------------------ccce-----
Confidence            22222467899999999765 4553   246688888754321                            1111     


Q ss_pred             cCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          317 GVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       317 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                  .+..|...++.++|-+.|.    ..|.+++.||+|..-.+++
T Consensus       304 ------------t~~eH~~~vt~i~W~~~d~----~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  304 ------------TFLEHTDSVTGIAWDSGDR----INLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             ------------eeeccCccccceeccCCCc----eeeEeecCccHHHHhhhhc
Confidence                        3357999999999554343    7899999999988766654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.7e-27  Score=202.53  Aligned_cols=300  Identities=12%  Similarity=0.099  Sum_probs=215.9

Q ss_pred             EEEeCCCCcEEEEEecCCeEEEEEecCC-ceEEEEEeccCCCceEEEEEcCC-----------CCEEEEEeCCCeEEEEe
Q 016982           15 CHAWSPDHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVR-----------SNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~d~~i~vw~   82 (379)
                      ++.|++....|.+...|..+++||+.+- +......+-.|...|..+.--|-           ...++|++.|++|++|+
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~  408 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD  408 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence            5689998899999999999999999863 23344555568888887776551           13588999999999999


Q ss_pred             ccCCceeeeE-----------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           83 QEGSEWVPTL-----------------------------------VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        83 ~~~~~~~~~~-----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                      +.....-..+                                   ........+.+++.+|+|+.||+|..-|.+++|++
T Consensus       409 l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L  488 (1080)
T KOG1408|consen  409 LAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL  488 (1080)
T ss_pred             cccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEe
Confidence            8763110000                                   01122346899999999999999999999999999


Q ss_pred             ecCCceeEEEEEeecCCcCEEEEEEcCC---CcEEEEeeCCCeEEEEeccccc-----ccc-----------------cc
Q 016982          128 EQENNWWVSKLIRKRHDSSVTSVAWHPN---NVFLATTSTDGKCRVFSTFIKG-----VDI-----------------KE  182 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~d~~i~v~d~~~~~-----~~~-----------------~~  182 (379)
                      ....   ..-.+ ..|...|.|+.|+..   .++|++++.|..|.|||+..+-     ++.                 +.
T Consensus       489 q~l~---~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M  564 (1080)
T KOG1408|consen  489 QELE---YTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM  564 (1080)
T ss_pred             hhhh---hhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence            8766   23334 799999999999853   4789999999999999975210     000                 00


Q ss_pred             c--cCCCcc---CCcccceEEEeec-----CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee---ecCC
Q 016982          183 K--KEGTSS---DTKFGEQILQLDL-----SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF---RDLP  249 (379)
Q Consensus       183 ~--~~~~~~---~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~  249 (379)
                      -  .+....   ..+.......+..     ....+..++..|..+++++++.|..|+|||+.++++. +.+++   |.+.
T Consensus       565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~FKgs~~~eG~  643 (1080)
T KOG1408|consen  565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSFKGSRDHEGD  643 (1080)
T ss_pred             EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee-eeecccccCCCc
Confidence            0  000000   0000000011111     1245788999999999999999999999999998854 66654   4566


Q ss_pred             eeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccc
Q 016982          250 LRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRT  328 (379)
Q Consensus       250 i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (379)
                      ...+...|.|-||+ +++|.++.++++-.+.+..                                              
T Consensus       644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA----------------------------------------------  677 (1080)
T KOG1408|consen  644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA----------------------------------------------  677 (1080)
T ss_pred             eEEEEECCCccEEEEeecCCceEEEEeccchhhh----------------------------------------------
Confidence            77899999999999 5678899888865543221                                              


Q ss_pred             cccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          329 RGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       329 ~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      .+.||...|+.+. |.+|-    +.|++.+.||.|.||.+..
T Consensus       678 ~m~GHsE~VTG~k-F~nDC----kHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  678 QMTGHSEAVTGVK-FLNDC----KHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhcCcchheeeee-ecccc----hhheeecCCceEEEEECch
Confidence            2258999999999 76665    8999999999999999864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=8.2e-29  Score=190.55  Aligned_cols=251  Identities=8%  Similarity=0.096  Sum_probs=202.1

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      +++.|.++|+++.|+|....|++|+.|++|++||......+.....-....+|.++.|+|.|.+|+.|..-.++++||++
T Consensus       167 TlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~  246 (430)
T KOG0640|consen  167 TLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN  246 (430)
T ss_pred             ehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence            57889999999999999999999999999999999764222222222245689999999999999999999999999999


Q ss_pred             CCceeeeE-EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC-cCEEEEEEcCCCcEEEEe
Q 016982           85 GSEWVPTL-VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD-SSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        85 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~  162 (379)
                      +-++-... ....|.+.|+++.+++.+++.++++.||.|++||--.+.   +.+.+...|. ..|.+..|..+++++++.
T Consensus       247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---Cv~t~~~AH~gsevcSa~Ftkn~kyiLsS  323 (430)
T KOG0640|consen  247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---CVRTIGNAHGGSEVCSAVFTKNGKYILSS  323 (430)
T ss_pred             ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH---HHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence            98743322 224588999999999999999999999999999977666   4555545665 578899999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-----cceEEEEECCCCCEEEEEc-CCCeEEEEECCCC
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-----SWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGP  236 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~  236 (379)
                      +.|..+++|.+                  .++.++..+.+..     .--+...|+....+++.-. ..+.++-||.++.
T Consensus       324 G~DS~vkLWEi------------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  324 GKDSTVKLWEI------------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             CCcceeeeeee------------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence            99999999997                  6788888776541     1234567888888887765 4578999999987


Q ss_pred             CceeeeeeeecCCeeeEEEecCCcEE-EEEeCCCeEEEEec
Q 016982          237 SPLAQNVAFRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAAD  276 (379)
Q Consensus       237 ~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~  276 (379)
                      ......-.+|++.+..+.-||.+..+ .++.|...++|...
T Consensus       386 dr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  386 DRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            66544556899999999999987654 57778899998743

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=4.7e-28  Score=198.34  Aligned_cols=249  Identities=10%  Similarity=0.124  Sum_probs=192.8

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceE----------EEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeE
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE----------KLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNS   78 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   78 (379)
                      ...|.+++|++.|..|++.+.....+|+|...-.+.          -....++|...++|.+|+|.. +.++|++.||++
T Consensus       214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl  293 (641)
T KOG0772|consen  214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL  293 (641)
T ss_pred             ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence            468999999999998888888889999998764211          122346799999999999986 678999999999


Q ss_pred             EEEeccCCce-eeeEEee---cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc--CEEEEEE
Q 016982           79 YVWNQEGSEW-VPTLVIL---RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS--SVTSVAW  152 (379)
Q Consensus        79 ~vw~~~~~~~-~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~--~v~~~~~  152 (379)
                      ++||++..+. ...+...   +..-+++.++|+|+|+.||.|+.||.|.+|+....... ....+...|..  .|+|+.|
T Consensus       294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~F  372 (641)
T KOG0772|consen  294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISF  372 (641)
T ss_pred             EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEe
Confidence            9999986532 2222211   23357899999999999999999999999998544321 12223367877  9999999


Q ss_pred             cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC--CcceEEEEECCCCCEEEEEc------C
Q 016982          153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS--FSWAFGVKWSPSGNTLAYVG------H  224 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~------~  224 (379)
                      +++|++|++-+.|+++++||+                 .+..+++....+-  ..+-+.++|||+.+++++|.      .
T Consensus       373 S~dg~~LlSRg~D~tLKvWDL-----------------rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~  435 (641)
T KOG0772|consen  373 SYDGNYLLSRGFDDTLKVWDL-----------------RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT  435 (641)
T ss_pred             ccccchhhhccCCCceeeeec-----------------cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence            999999999999999999998                 3555666555433  23457899999999999985      3


Q ss_pred             CCeEEEEECCCCCceeeeeeeecCCeeeEEEecC-CcEEEEEeCCCeEEEEecC
Q 016982          225 NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE-KMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       225 d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~d~~~~i~~~~~  277 (379)
                      .|.+.+||..+-. .++.+......|..+.|+|. +++++++.||.+++|....
T Consensus       436 ~g~L~f~d~~t~d-~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  436 AGTLFFFDRMTLD-TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             CceEEEEecccee-eEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence            5789999976654 45666666788999999995 6788889999999887543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=5.4e-27  Score=179.32  Aligned_cols=300  Identities=16%  Similarity=0.241  Sum_probs=208.8

Q ss_pred             eccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCc----------eEEE---EEeccCCCceEEEEEcCCC-CEEEE
Q 016982            7 HQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEK----------WEKL---HVLQKHDQIVSGIDWSVRS-NRIVT   71 (379)
Q Consensus         7 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~----------~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~   71 (379)
                      ..|.+.|+++...+ .|+++++|+.||.|.+||+++..          ..++   ..-.+|.-.|.++.|-|-. -.+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999988 78999999999999999998642          0110   1123567789999999944 57788


Q ss_pred             EeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC---CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           72 VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK---ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        72 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      ++.|.++++||..+-+....+   ...+.|++-+++|-   ..++|+|..+-.|++.|+..+.   ....+ .+|.+.|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F---~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs---~sH~L-sGHr~~vl  192 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF---KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS---FSHTL-SGHRDGVL  192 (397)
T ss_pred             ccccceEEEeecccceeeEEe---ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc---ceeee-ccccCceE
Confidence            899999999999998755444   34788999999983   4578888889999999999998   56677 99999999


Q ss_pred             EEEEcCCCc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCe
Q 016982          149 SVAWHPNNV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM  227 (379)
Q Consensus       149 ~~~~~p~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  227 (379)
                      ++.|+|... .|++|+.||.|++||++...--++......   ......++.-..|.+.++.++|+.++.++++.+.|..
T Consensus       193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn---~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r  269 (397)
T KOG4283|consen  193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN---TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR  269 (397)
T ss_pred             EEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc---CccCccccccccccceeeeeeecccchhhhhccCccc
Confidence            999999875 577899999999999842111111000000   0011122234567788999999999999999999999


Q ss_pred             EEEEECCCCCceeeeee--eecCCeeeEEEe---cC-CcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982          228 IYFVDDVGPSPLAQNVA--FRDLPLRDVLFV---SE-KMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS  301 (379)
Q Consensus       228 i~v~d~~~~~~~~~~~~--~~~~~i~~~~~s---~~-~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
                      +++|+..++......+-  .|+.. .++.+.   -+ +.++..-.++.+.+++.-+..   .++                
T Consensus       270 ~r~wn~~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs---~ir----------------  329 (397)
T KOG4283|consen  270 IRVWNMESGRNTLREFGPIIHNQT-TSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS---FVR----------------  329 (397)
T ss_pred             eEEeecccCccccccccccccccc-ccceEEEeecccceEEEEecCCeEEEEEccCce---EEE----------------
Confidence            99999888764322221  11111 122221   11 122223333444444332211   111                


Q ss_pred             CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                                                 .+.+|-..|.|.. +.++-    +...+|..|+.|..|-.
T Consensus       330 ---------------------------~l~~h~k~i~c~~-~~~~f----q~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  330 ---------------------------RLSTHLKRINCAA-YRPDF----EQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ---------------------------eeecccceeeEEe-ecCch----hhhhccccCCccccccc
Confidence                                       4467888888877 66554    78999999999999976

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=6.3e-28  Score=204.16  Aligned_cols=249  Identities=17%  Similarity=0.214  Sum_probs=209.4

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeE-EEECC-CCCEEEEEeCCCe
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALC-VQWSP-KENKFAVGSGAKT  121 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~  121 (379)
                      .+..+.+.+|...|..+++.+.. .+++++.||++++|+-..+++.....+.++.+-+.. +++-+ ++-.+++|+.|.+
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            46778899999999999887554 889999999999999988888776666777777766 88876 4556999999999


Q ss_pred             EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      +.+|......+   ...+ .+|...|.+++...++. +++|+.|.++++|..                    +++...++
T Consensus        83 i~v~~~~~~~P---~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--------------------~~l~~~l~  137 (745)
T KOG0301|consen   83 IIVFKLSQAEP---LYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--------------------GELVYSLQ  137 (745)
T ss_pred             EEEEecCCCCc---hhhh-hccccceeeeecCCcCc-eEecccccceEEecc--------------------hhhhcccC
Confidence            99999888773   5556 89999999999877777 999999999999954                    78888899


Q ss_pred             cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcE
Q 016982          202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW  281 (379)
Q Consensus       202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~  281 (379)
                      +|...|++++.-|++ .+++|+.|.+|++|.-   ..+++++.+|..-|+.+++-+++.++.++.|+.|++|+.++....
T Consensus       138 gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~  213 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN-TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLL  213 (745)
T ss_pred             CcchheeeeeecCCC-cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceee
Confidence            999999999999988 6889999999999974   235689999999999999999999999999999999998654322


Q ss_pred             EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982          282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG  361 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg  361 (379)
                      .                                               +.||++-|.++... .+.    ..++|+|+|+
T Consensus       214 ~-----------------------------------------------~~ghtn~vYsis~~-~~~----~~Ivs~gEDr  241 (745)
T KOG0301|consen  214 E-----------------------------------------------MHGHTNFVYSISMA-LSD----GLIVSTGEDR  241 (745)
T ss_pred             e-----------------------------------------------eeccceEEEEEEec-CCC----CeEEEecCCc
Confidence            2                                               25899999999943 333    6999999999


Q ss_pred             eEEEEeCCCcccccc
Q 016982          362 KIVTWDLESQEDLLN  376 (379)
Q Consensus       362 ~v~iW~~~~~~~~~~  376 (379)
                      ++|||+..  ++.|.
T Consensus       242 tlriW~~~--e~~q~  254 (745)
T KOG0301|consen  242 TLRIWKKD--ECVQV  254 (745)
T ss_pred             eEEEeecC--ceEEE
Confidence            99999987  44443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3e-27  Score=181.18  Aligned_cols=257  Identities=18%  Similarity=0.201  Sum_probs=186.5

Q ss_pred             cCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccC-CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec
Q 016982           52 KHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEG-SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ  129 (379)
Q Consensus        52 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~  129 (379)
                      ...+.|.+|+||| ...+++.++.|++|++|+++. +...+. ....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccch-hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            3467899999999 456677899999999999987 454443 3367899999999999999999999999999999999


Q ss_pred             CCceeEEEEEeecCCcCEEEEEEcCCCc--EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982          130 ENNWWVSKLIRKRHDSSVTSVAWHPNNV--FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA  207 (379)
Q Consensus       130 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  207 (379)
                      ++    ...+ ..|.++|..+.|-+...  .|+||+.|.+|+.||+                  +...++.+++. ...+
T Consensus       104 ~Q----~~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~------------------R~~~pv~t~~L-PeRv  159 (347)
T KOG0647|consen  104 GQ----VSQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT------------------RSSNPVATLQL-PERV  159 (347)
T ss_pred             CC----eeee-eecccceeEEEEecCCCcceeEecccccceeeccc------------------CCCCeeeeeec-ccee
Confidence            97    3444 68999999999987664  8999999999999997                  56667776655 3445


Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCc-EEEE
Q 016982          208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGI-WTFI  284 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~-~~~~  284 (379)
                      .++..-  ..+++++..++.|.+|+++++....+... .-...+++++..+|.. ++.++-+|.+.+...+.... -++.
T Consensus       160 Ya~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt  237 (347)
T KOG0647|consen  160 YAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT  237 (347)
T ss_pred             eehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee
Confidence            555432  45677888899999999987653322222 1234578888877765 44588899998888776321 1111


Q ss_pred             EEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982          285 KFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV  364 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~  364 (379)
                      -.........                                    .+.-=.|++|+|++..     ..|+|+|.||+..
T Consensus       238 FkCHR~~~~~------------------------------------~~~VYaVNsi~FhP~h-----gtlvTaGsDGtf~  276 (347)
T KOG0647|consen  238 FKCHRSTNSV------------------------------------NDDVYAVNSIAFHPVH-----GTLVTAGSDGTFS  276 (347)
T ss_pred             EEEeccCCCC------------------------------------CCceEEecceEeeccc-----ceEEEecCCceEE
Confidence            0000000000                                    0001158889976544     5999999999999


Q ss_pred             EEeCCCcccccc
Q 016982          365 TWDLESQEDLLN  376 (379)
Q Consensus       365 iW~~~~~~~~~~  376 (379)
                      +||-.....|+.
T Consensus       277 FWDkdar~kLk~  288 (347)
T KOG0647|consen  277 FWDKDARTKLKT  288 (347)
T ss_pred             Eecchhhhhhhc
Confidence            999887776654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.7e-27  Score=181.97  Aligned_cols=243  Identities=12%  Similarity=0.126  Sum_probs=184.8

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      .+.|+.+.|+|.++.|++++.||.+++|+....  .....+ .|..++.+++|.+ ...+++|+.||.|+++|+.+++  
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--   86 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--   86 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence            578999999999999999999999999999886  333333 4888999999987 4588999999999999999986  


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                       ...+..|..++.++.+++....+++|+.|++|++||.+...   ....  ......|.++..  .++.|++|+.+..+.
T Consensus        87 -~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~---~~~~--~d~~kkVy~~~v--~g~~LvVg~~~r~v~  158 (323)
T KOG1036|consen   87 -EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV---VVGT--FDQGKKVYCMDV--SGNRLVVGTSDRKVL  158 (323)
T ss_pred             -ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc---cccc--cccCceEEEEec--cCCEEEEeecCceEE
Confidence             44457799999999999988899999999999999998643   1222  234457888876  577899999999999


Q ss_pred             EEeccccccccccccCCCc------------------------------cCCcccceEEEeecCC---------cceEEE
Q 016982          170 VFSTFIKGVDIKEKKEGTS------------------------------SDTKFGEQILQLDLSF---------SWAFGV  210 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~---------~~v~~~  210 (379)
                      +||++............+.                              ......+....|..|.         .+|+++
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai  238 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI  238 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence            9998632222100000000                              0000111223344442         369999


Q ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeC
Q 016982          211 KWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFD  267 (379)
Q Consensus       211 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d  267 (379)
                      +|+|-...|++|+.||.|.+||+.+.+.+ ..+......|.+++|+.+|..||.+.+
T Consensus       239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl-~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  239 AFHPIHGTFATGGSDGIVNIWDLFNRKRL-KQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EeccccceEEecCCCceEEEccCcchhhh-hhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999999999999999887755 555555677999999999999997654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.6e-28  Score=179.76  Aligned_cols=255  Identities=20%  Similarity=0.219  Sum_probs=199.5

Q ss_pred             eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce-eeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEEE
Q 016982           50 LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW-VPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCICY  126 (379)
Q Consensus        50 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~  126 (379)
                      -..|.+.|..+...-.|++|+|++.|++|+|+.++.... ....++.+|.++|..++|..  -|.+||+++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            356888888888777899999999999999999987654 55667789999999999965  799999999999999998


Q ss_pred             eecCCceeEEEEEeecCCcCEEEEEEcCCC--cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNN--VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                      -..+ .|...... ..|...|++++|.|.+  -.|++++.||.|.|.+....               ......+....|.
T Consensus        87 e~~g-~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---------------g~w~t~ki~~aH~  149 (299)
T KOG1332|consen   87 EENG-RWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---------------GGWTTSKIVFAHE  149 (299)
T ss_pred             cCCC-chhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC---------------CCccchhhhhccc
Confidence            7776 34333333 6899999999999964  78899999999999987310               0011223346788


Q ss_pred             cceEEEEECCC---C-----------CEEEEEcCCCeEEEEECCCCCc-eeeeeeeecCCeeeEEEecCC----cEEE-E
Q 016982          205 SWAFGVKWSPS---G-----------NTLAYVGHNSMIYFVDDVGPSP-LAQNVAFRDLPLRDVLFVSEK----MVIG-V  264 (379)
Q Consensus       205 ~~v~~~~~sp~---~-----------~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s~~~----~~l~-~  264 (379)
                      -.|+++.|.|-   |           +.|++|+.|..|+||+.....- +.+++.+|...|+.++|.|.-    ..|| +
T Consensus       150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~  229 (299)
T KOG1332|consen  150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC  229 (299)
T ss_pred             cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence            88999999995   5           5699999999999999877532 234588999999999999953    3566 7


Q ss_pred             EeCCCeEEEEecCC-CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeee
Q 016982          265 GFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPL  343 (379)
Q Consensus       265 ~~d~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  343 (379)
                      +.|+++.||..+.+ +.|+..                                            .+......+..+. +
T Consensus       230 SqDg~viIwt~~~e~e~wk~t--------------------------------------------ll~~f~~~~w~vS-W  264 (299)
T KOG1332|consen  230 SQDGTVIIWTKDEEYEPWKKT--------------------------------------------LLEEFPDVVWRVS-W  264 (299)
T ss_pred             cCCCcEEEEEecCccCccccc--------------------------------------------ccccCCcceEEEE-E
Confidence            88999999998754 345431                                            1122345688888 7


Q ss_pred             cccCCcccceEEEeecCceEEEEeCCC
Q 016982          344 REAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       344 ~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      +..|    .+|+.++.|..|.+|.-+.
T Consensus       265 S~sG----n~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  265 SLSG----NILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             eccc----cEEEEecCCcEEEEEEeCC
Confidence            7666    8999999999999998654

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=1.5e-25  Score=188.98  Aligned_cols=274  Identities=12%  Similarity=0.094  Sum_probs=192.9

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeeEEeecCCCc
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPTLVILRLNRA  100 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  100 (379)
                      ++.+++++.|+.|++||+.++  +.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+.  . ...
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~-~~~   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL--EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--S-GPD   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC--ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--C-CCC
Confidence            357889999999999999887  5666676554 36789999999876 566788999999999887554432  2 234


Q ss_pred             eeEEEECCCCCEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC-eEEEEecccccc
Q 016982          101 ALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG-KCRVFSTFIKGV  178 (379)
Q Consensus       101 v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-~i~v~d~~~~~~  178 (379)
                      +..++|+|+++.++++ ..++.+++||+.+..   ....+  .+...+.+++|+|++++++++..++ .+.+||.     
T Consensus        75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~---~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~-----  144 (300)
T TIGR03866        75 PELFALHPNGKILYIANEDDNLVTVIDIETRK---VLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDT-----  144 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe---EEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeC-----
Confidence            5778999999977665 458999999998765   23333  2234467899999999999888765 4667785     


Q ss_pred             ccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeeeeeeec-------CCe
Q 016982          179 DIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQNVAFRD-------LPL  250 (379)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~-------~~i  250 (379)
                                   .+.+....+.. ...+..++|+|++++|+++ ..++.|++||+.+++. ...+..+.       ...
T Consensus       145 -------------~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~  209 (300)
T TIGR03866       145 -------------KTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQP  209 (300)
T ss_pred             -------------CCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCCc
Confidence                         33444433322 2345789999999988655 4689999999988653 23333211       123


Q ss_pred             eeEEEecCCcEEE--EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccc
Q 016982          251 RDVLFVSEKMVIG--VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRT  328 (379)
Q Consensus       251 ~~~~~s~~~~~l~--~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (379)
                      ..++|+|+++++.  .+.++.+.+|+....   ++....                                         
T Consensus       210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~-----------------------------------------  245 (300)
T TIGR03866       210 VGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYL-----------------------------------------  245 (300)
T ss_pred             cceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEE-----------------------------------------
Confidence            4688999998754  345667888876532   222111                                         


Q ss_pred             cccccccceeeeeeecccCCcccceEEEe-ecCceEEEEeCCCccccccCC
Q 016982          329 RGGTHVNCINCIVPLREAGSSRITRFTTS-GLDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       329 ~~~~h~~~v~~~~~~~~~~~~~~~~l~t~-~~Dg~v~iW~~~~~~~~~~~~  378 (379)
                         .+...+.+++ |++++    .+|+++ +.+|.|++||+.+++.++.+.
T Consensus       246 ---~~~~~~~~~~-~~~~g----~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       246 ---LVGQRVWQLA-FTPDE----KYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             ---EeCCCcceEE-ECCCC----CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence               1233577888 77666    777765 579999999999998876653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4e-27  Score=190.58  Aligned_cols=291  Identities=12%  Similarity=0.081  Sum_probs=209.0

Q ss_pred             CeEEEEEecCCceEEEEEeccC-CCceEEEEEcCCCCEEEEEeC-CCeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKH-DQIVSGIDWSVRSNRIVTVSH-DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      ..+.+||+.++  ....++++. ...-.++..- .+++++++.. -..+.+|.+.........  .-.++++.+++-+|+
T Consensus        18 ~~~~~~dl~TG--t~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~--~v~Pg~v~al~s~n~   92 (476)
T KOG0646|consen   18 INCIVWDLRTG--TSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQY--IVLPGPVHALASSNL   92 (476)
T ss_pred             cceeEEecCCC--ceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhh--cccccceeeeecCCC
Confidence            45999999998  455555543 1111122211 2356666653 346899998776533311  224688999999999


Q ss_pred             CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCcc
Q 016982          110 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS  189 (379)
Q Consensus       110 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  189 (379)
                      |.+++.|+..|.+++|.+.++.   +...+ ..|...|+|+.|+-||.+|++|+.||.|.+|.+..    .-....    
T Consensus        93 G~~l~ag~i~g~lYlWelssG~---LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~----lv~a~~----  160 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGI---LLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD----LVSADN----  160 (476)
T ss_pred             ceEEEeecccCcEEEEEecccc---HHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe----eccccc----
Confidence            9999999899999999999998   45666 89999999999999999999999999999998731    111000    


Q ss_pred             CCcccceEEEeecCCcceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEe
Q 016982          190 DTKFGEQILQLDLSFSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGF  266 (379)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~  266 (379)
                       ..+.++++.+..|.-+|+++...+.  ..+|+++|.|.++++||+..+. ++..+. ...++.+++.+|-++.+. ++.
T Consensus       161 -~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~-fp~si~av~lDpae~~~yiGt~  237 (476)
T KOG0646|consen  161 -DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTIT-FPSSIKAVALDPAERVVYIGTE  237 (476)
T ss_pred             -CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEe-cCCcceeEEEcccccEEEecCC
Confidence             1256778889999999999988875  4579999999999999999886 444444 467899999999877665 667


Q ss_pred             CCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc--ceeeeeeec
Q 016982          267 DCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN--CINCIVPLR  344 (379)
Q Consensus       267 d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~  344 (379)
                      +|.+.+..+.......  ..+...           ++                 .........+.||.+  .|+|++ .+
T Consensus       238 ~G~I~~~~~~~~~~~~--~~v~~k-----------~~-----------------~~~~t~~~~~~Gh~~~~~ITcLa-is  286 (476)
T KOG0646|consen  238 EGKIFQNLLFKLSGQS--AGVNQK-----------GR-----------------HEENTQINVLVGHENESAITCLA-IS  286 (476)
T ss_pred             cceEEeeehhcCCccc--cccccc-----------cc-----------------ccccceeeeeccccCCcceeEEE-Ee
Confidence            8887766644311000  000000           00                 000001114478988  999999 88


Q ss_pred             ccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          345 EAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       345 ~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      .||    .+|++|+.||.|+|||+.+.++++.+
T Consensus       287 ~Dg----tlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  287 TDG----TLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             cCc----cEEEeeCCCCCEEEEecchHHHHHHH
Confidence            777    99999999999999999999988765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.9e-27  Score=191.39  Aligned_cols=239  Identities=15%  Similarity=0.080  Sum_probs=195.3

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-----
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE-----   84 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-----   84 (379)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.++  ..+..+.+|-..|+++.|+-||.+|+||+.||.|.+|.+.     
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            678999999999999999989999999999998  7888899999999999999999999999999999999863     


Q ss_pred             --CCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           85 --GSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        85 --~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                        +....+...+..|.-+|+++...+-  ..++++++.|.++++||+..+.   +...+  .....+.+++.+|-++.+.
T Consensus       159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~---LLlti--~fp~si~av~lDpae~~~y  233 (476)
T KOG0646|consen  159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV---LLLTI--TFPSSIKAVALDPAERVVY  233 (476)
T ss_pred             ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce---eeEEE--ecCCcceeEEEcccccEEE
Confidence              2244455566789999999988764  4689999999999999999986   33333  5677899999999999999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc--ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      .|+.+|.|.+.++....-..+ .-. .......+..+..+.+|.+  .|++++.+-||.+|++|+.||.++|||+.+.+ 
T Consensus       234 iGt~~G~I~~~~~~~~~~~~~-~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q-  310 (476)
T KOG0646|consen  234 IGTEEGKIFQNLLFKLSGQSA-GVN-QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ-  310 (476)
T ss_pred             ecCCcceEEeeehhcCCcccc-ccc-ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH-
Confidence            999999999988742110000 000 0001234566777888887  99999999999999999999999999988754 


Q ss_pred             eeeeeeeecCCeeeEEEecC
Q 016982          239 LAQNVAFRDLPLRDVLFVSE  258 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~  258 (379)
                      +++++....++|+.+.+.|-
T Consensus       311 ~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  311 CIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             HHHHHhhhccccceeEeecc
Confidence            66777656789999998664

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.7e-26  Score=192.52  Aligned_cols=294  Identities=15%  Similarity=0.230  Sum_probs=218.5

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCC--EEEEEeCCCeEEEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSN--RIVTVSHDRNSYVW   81 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~vw   81 (379)
                      ..+.+|.+.|.|++..|.|..||+|+.||+|+||.+.++  .++.++. ..+.|.|++|+|.+.  .||++- +..+.+.
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv  469 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV  469 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence            457899999999999999999999999999999999998  7777766 356899999999874  344433 2234443


Q ss_pred             ec---------------------------------cCCc--eeeeEEeecCCCceeEEEECCCCCEEEEEeC---CCeEE
Q 016982           82 NQ---------------------------------EGSE--WVPTLVILRLNRAALCVQWSPKENKFAVGSG---AKTVC  123 (379)
Q Consensus        82 ~~---------------------------------~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~  123 (379)
                      +.                                 ...+  .........|...|..+.|+..|.+|++...   ...|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            32                                 1100  0001122457788999999999999999865   35688


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      |+++.....   ...+ ....+.+.++.|+|...+|++++ ...|+|||+                  .....++.+...
T Consensus       550 iHQLSK~~s---Q~PF-~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL------------------~kqelvKkL~tg  606 (733)
T KOG0650|consen  550 IHQLSKRKS---QSPF-RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDL------------------SKQELVKKLLTG  606 (733)
T ss_pred             EEecccccc---cCch-hhcCCceeEEEecCCCceEEEEe-ccceEEEeh------------------hHHHHHHHHhcC
Confidence            888877652   3333 45667899999999998888776 457999997                  345555666556


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeC-CCeEEEEecCCCcEE
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFD-CNPMVFAADETGIWT  282 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d-~~~~i~~~~~~~~~~  282 (379)
                      ...|..++.+|.|..|+.++.|+.+..||+.-.....+++..|...+++++|++.-.++++++| +.+.+|...-..  +
T Consensus       607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~--D  684 (733)
T KOG0650|consen  607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN--D  684 (733)
T ss_pred             CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh--h
Confidence            7789999999999999999999999999998877677889999999999999999899996655 788887633111  1


Q ss_pred             EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccc----eeeeeeecccCCcccceEEEee
Q 016982          283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNC----INCIVPLREAGSSRITRFTTSG  358 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~l~t~~  358 (379)
                      +.+      ++.            .-                 +...+.||...    |..+.|+     |...+|.|+|
T Consensus       685 l~q------npl------------iV-----------------PlK~L~gH~~~~~~gVLd~~wH-----P~qpWLfsAG  724 (733)
T KOG0650|consen  685 LLQ------NPL------------IV-----------------PLKRLRGHEKTNDLGVLDTIWH-----PRQPWLFSAG  724 (733)
T ss_pred             hhc------CCc------------eE-----------------eeeeccCceeecccceEeeccc-----CCCceEEecC
Confidence            100      000            00                 11145788665    8888855     4447999999


Q ss_pred             cCceEEEE
Q 016982          359 LDGKIVTW  366 (379)
Q Consensus       359 ~Dg~v~iW  366 (379)
                      .||+||+|
T Consensus       725 Ad~tirlf  732 (733)
T KOG0650|consen  725 ADGTIRLF  732 (733)
T ss_pred             CCceEEee
Confidence            99999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-28  Score=208.89  Aligned_cols=240  Identities=18%  Similarity=0.262  Sum_probs=191.7

Q ss_pred             eeEEEeCC-CCcEEEEEecCCeEEEEEecCC-ceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCcee
Q 016982           13 ITCHAWSP-DHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        13 i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      +..|.|+. +.++||+++..|.|.+||+... .-+.+..|..|...++++.|++.. ++|++|+.||+|++||++..+-.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            44566764 5578999999999999999862 125667889999999999999865 78899999999999999988755


Q ss_pred             eeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           90 PTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                      ..+  ......|.++.|+| .+..++++.+.|.+++||++....+  ...+ ..|.++|.|+.|+|++.+||+|+.|+.|
T Consensus       170 ~t~--~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~--~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  170 STF--RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC--EKKL-TAHNGPVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             ccc--cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH--HHHh-hcccCceEEEeecCCCceeeecCCCccE
Confidence            554  55678999999999 6889999999999999999987752  3344 7899999999999999999999999999


Q ss_pred             EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCE-EEEEc--CCCeEEEEECCCCCceeeeeee
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT-LAYVG--HNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~--~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      +|||...                .....+.++.. ..++..+.|-|...+ |++++  .|-.|+|||++.+.-...++..
T Consensus       245 kiWd~t~----------------~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e  307 (839)
T KOG0269|consen  245 KIWDMTD----------------SRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE  307 (839)
T ss_pred             EEEeccC----------------CCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence            9999721                12233344433 567999999997655 66655  5789999999998777788889


Q ss_pred             ecCCeeeEEEecCC--cEEEEEeCCCeEEEE
Q 016982          246 RDLPLRDVLFVSEK--MVIGVGFDCNPMVFA  274 (379)
Q Consensus       246 ~~~~i~~~~~s~~~--~~l~~~~d~~~~i~~  274 (379)
                      |...++.++|....  .++.++.|+.+..-.
T Consensus       308 H~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~  338 (839)
T KOG0269|consen  308 HTDSVTGIAWDSGDRINLWSCSKDGTVLQHL  338 (839)
T ss_pred             cCccccceeccCCCceeeEeecCccHHHHhh
Confidence            99999999997732  244477777765443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.3e-26  Score=173.77  Aligned_cols=274  Identities=18%  Similarity=0.263  Sum_probs=192.5

Q ss_pred             ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC--CceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEEE
Q 016982           51 QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG--SEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCICY  126 (379)
Q Consensus        51 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~  126 (379)
                      .+|.+-|+++.|.+.|+++++|+.|++|+|||.+.  +.+...-....|.+.|..+.|.+  -|+.+|+++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            46888999999999999999999999999999654  45555555677999999999966  489999999999999997


Q ss_pred             eecC------CceeEEEEEeecCCcCEEEEEEcCC--CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE
Q 016982          127 YEQE------NNWWVSKLIRKRHDSSVTSVAWHPN--NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL  198 (379)
Q Consensus       127 ~~~~------~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
                      -...      ..|.....+ ......|+++.|.|.  |-.|++++.||.++||+.-            ............
T Consensus        90 E~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~------------dp~nLs~W~Lq~  156 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP------------DPMNLSQWTLQH  156 (361)
T ss_pred             ecccccccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEecC------------Cccccccchhhh
Confidence            5221      234444455 677889999999995  6789999999999999851            001112222223


Q ss_pred             Eee-------cCCcceEEEEECCC---CCEEEEEcCC-----CeEEEEECCCCC---ceeeeeeeecCCeeeEEEecC-C
Q 016982          199 QLD-------LSFSWAFGVKWSPS---GNTLAYVGHN-----SMIYFVDDVGPS---PLAQNVAFRDLPLRDVLFVSE-K  259 (379)
Q Consensus       199 ~~~-------~~~~~v~~~~~sp~---~~~l~~~~~d-----~~i~v~d~~~~~---~~~~~~~~~~~~i~~~~~s~~-~  259 (379)
                      ++.       .+..+..|+.|+|.   ..+|+.|+.+     +.++||......   ..+..+..|..+|++++|.|+ |
T Consensus       157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G  236 (361)
T KOG2445|consen  157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG  236 (361)
T ss_pred             hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence            332       34556789999984   5678888755     478899765543   133566688999999999995 3


Q ss_pred             ---cEEEE-EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc
Q 016982          260 ---MVIGV-GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN  335 (379)
Q Consensus       260 ---~~l~~-~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  335 (379)
                         .+||+ +.|| ++||......  ..+. .++...+.           .+..+            .-+....+.+|.+
T Consensus       237 r~y~~lAvA~kDg-v~I~~v~~~~--s~i~-~ee~~~~~-----------~~~~l------------~v~~vs~~~~H~~  289 (361)
T KOG2445|consen  237 RSYHLLAVATKDG-VRIFKVKVAR--SAIE-EEEVLAPD-----------LMTDL------------PVEKVSELDDHNG  289 (361)
T ss_pred             CceeeEEEeecCc-EEEEEEeecc--chhh-hhcccCCC-----------Ccccc------------ceEEeeeccCCCC
Confidence               46774 4555 9999865421  0000 00000000           00000            0012225678999


Q ss_pred             ceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          336 CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       336 ~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                      +|..++ |+-.|    ..|+|.|+||+||+|...
T Consensus       290 ~VWrv~-wNmtG----tiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  290 EVWRVR-WNMTG----TILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ceEEEE-Eeeee----eEEeecCCCceeeehhhh
Confidence            999999 76555    899999999999999875

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=2.3e-25  Score=182.21  Aligned_cols=236  Identities=15%  Similarity=0.200  Sum_probs=182.7

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc--
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE--   87 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~--   87 (379)
                      +.-|.|++|.++|. +++|..+|.|.||+..+.  +..+....|++.|.++....+|. |++|+.|..|..||-.-.+  
T Consensus       246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~--~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r  321 (626)
T KOG2106|consen  246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTN--RISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLR  321 (626)
T ss_pred             ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc--eEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccc
Confidence            36799999999887 678999999999998776  45555559999999999999885 4559999999999821100  


Q ss_pred             ---------ee---------------------------eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982           88 ---------WV---------------------------PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN  131 (379)
Q Consensus        88 ---------~~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~  131 (379)
                               .+                           ..+...+|....+.++.+|+.+++++++.|+.+++|+  ..+
T Consensus       322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k  399 (626)
T KOG2106|consen  322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK  399 (626)
T ss_pred             cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence                     00                           0122345677888999999999999999999999999  222


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK  211 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  211 (379)
                      .    .-. .....++.|+.|+|.| .++.|+..|...+.|+                  ++...+ ++...+.+++.++
T Consensus       400 ~----~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~------------------e~~~lv-~~~~d~~~ls~v~  454 (626)
T KOG2106|consen  400 L----EWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDT------------------ETQDLV-TIHTDNEQLSVVR  454 (626)
T ss_pred             e----eEE-EEecCceeEeeccCcc-eEEEeeccceEEEEec------------------ccceeE-EEEecCCceEEEE
Confidence            1    111 3345788999999999 9999999999999997                  443333 3333378899999


Q ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCceeeee-eeecCCeeeEEEecCCcEEEE-EeCCCeEEEEec
Q 016982          212 WSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV-AFRDLPLRDVLFVSEKMVIGV-GFDCNPMVFAAD  276 (379)
Q Consensus       212 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~-~~d~~~~i~~~~  276 (379)
                      |+|+|.+||.|+.|+.|++|-+..+......+ +.+..+|+.+.||+|++++.+ +.|-.+..|...
T Consensus       455 ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  455 YSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             EcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            99999999999999999999887665443333 345689999999999999984 556678788443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.9e-26  Score=177.31  Aligned_cols=248  Identities=16%  Similarity=0.131  Sum_probs=186.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW  133 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  133 (379)
                      ...|.++.|+|.++.|+.++.||.+++|++...+....   ..|..++.+++|.+ ...+++|+-||.|+.+|++++.  
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~---~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--   86 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK---FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--   86 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh---eecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence            56799999999999999999999999999988864333   35789999999997 5678999999999999999987  


Q ss_pred             eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC
Q 016982          134 WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS  213 (379)
Q Consensus       134 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  213 (379)
                        ...+ ..|..++.|+.+++-...+++|+.|++|++||.                  +.......+.. ...|.++..+
T Consensus        87 --~~~i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~------------------R~~~~~~~~d~-~kkVy~~~v~  144 (323)
T KOG1036|consen   87 --EDQI-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDP------------------RNKVVVGTFDQ-GKKVYCMDVS  144 (323)
T ss_pred             --ceee-ccCCCceEEEEeeccCCeEEEcccCccEEEEec------------------ccccccccccc-CceEEEEecc
Confidence              3444 689999999999998889999999999999996                  22333333333 3368777665


Q ss_pred             CCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982          214 PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGIWTFIKFLDERK  291 (379)
Q Consensus       214 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~  291 (379)
                        |+.|++|+.+..+.+||+++.....+.-. .-...+.++++-|++. +++++-||.+.+=..+....-.-        
T Consensus       145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s--------  214 (323)
T KOG1036|consen  145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS--------  214 (323)
T ss_pred             --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh--------
Confidence              77899999999999999998765432211 2245689999999655 66688898876543333200000        


Q ss_pred             cCCCCCccCCCcccccceeeccccccCcccccccccccccccc---------cceeeeeeecccCCcccceEEEeecCce
Q 016982          292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHV---------NCINCIVPLREAGSSRITRFTTSGLDGK  362 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  362 (379)
                                      .+|                  .+..|.         =+|++|+|++     -...|||||.||.
T Consensus       215 ----------------kky------------------aFkCHr~~~~~~~~~yPVNai~Fhp-----~~~tfaTgGsDG~  255 (323)
T KOG1036|consen  215 ----------------KKY------------------AFKCHRLSEKDTEIIYPVNAIAFHP-----IHGTFATGGSDGI  255 (323)
T ss_pred             ----------------hce------------------eEEeeecccCCceEEEEeceeEecc-----ccceEEecCCCce
Confidence                            000                  111221         2799999553     2368999999999


Q ss_pred             EEEEeCCCccccccCC
Q 016982          363 IVTWDLESQEDLLNYH  378 (379)
Q Consensus       363 v~iW~~~~~~~~~~~~  378 (379)
                      |.+||+.+.+.++.|+
T Consensus       256 V~~Wd~~~rKrl~q~~  271 (323)
T KOG1036|consen  256 VNIWDLFNRKRLKQLA  271 (323)
T ss_pred             EEEccCcchhhhhhcc
Confidence            9999999988877653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=3.6e-26  Score=193.60  Aligned_cols=303  Identities=15%  Similarity=0.160  Sum_probs=230.7

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc--eEEEEE---eccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK--WEKLHV---LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      +.+|.+.|+++.|+|.+..|++++.|.++.+|...+..  |...-.   +.+.........|+|+++.+++-+..|..++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            45999999999999999999999999999999987652  333322   2334456889999999999999999999999


Q ss_pred             Eec-cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC-ce-------------------------
Q 016982           81 WNQ-EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN-NW-------------------------  133 (379)
Q Consensus        81 w~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~-------------------------  133 (379)
                      |.. +...+.....+.+|...|.+++|+|.|.+|++.+.|.+-++|---.++ .|                         
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F  422 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF  422 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence            983 334555666668899999999999999999999988877764322000 00                         


Q ss_pred             --------------------------------------------------------------------------------
Q 016982          134 --------------------------------------------------------------------------------  133 (379)
Q Consensus       134 --------------------------------------------------------------------------------  133 (379)
                                                                                                      
T Consensus       423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e  502 (764)
T KOG1063|consen  423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE  502 (764)
T ss_pred             eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence                                                                                            


Q ss_pred             -------------eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-----CeEEEEeccccccccccccCCCccCCcccc
Q 016982          134 -------------WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGE  195 (379)
Q Consensus       134 -------------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
                                   +..+.+ .+|...|.+++.+|+++++|+++..     ..|++|+.                  .+..
T Consensus       503 PP~EdqLq~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t------------------~~W~  563 (764)
T KOG1063|consen  503 PPTEDQLQQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT------------------ANWL  563 (764)
T ss_pred             CChHHHHHHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEec------------------cchh
Confidence                         000011 3677789999999999999998864     35999986                  6677


Q ss_pred             eEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce---eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeE
Q 016982          196 QILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL---AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPM  271 (379)
Q Consensus       196 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~  271 (379)
                      .++.+.+|.-.|+.++|||||++|++.+.|.++.+|........   ....+.|.--|+++.|+|++++++ ++.|..++
T Consensus       564 ~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk  643 (764)
T KOG1063|consen  564 QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK  643 (764)
T ss_pred             hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence            77889999999999999999999999999999999986543221   223567888899999999999777 77899999


Q ss_pred             EEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCccc
Q 016982          272 VFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRI  351 (379)
Q Consensus       272 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  351 (379)
                      +|...+.. -+.+..                       +                  ....+...|+.+++.+.+....+
T Consensus       644 VW~~~~~~-d~~i~~-----------------------~------------------a~~~~~~aVTAv~~~~~~~~e~~  681 (764)
T KOG1063|consen  644 VWEEPDLR-DKYISR-----------------------F------------------ACLKFSLAVTAVAYLPVDHNEKG  681 (764)
T ss_pred             EEeccCch-hhhhhh-----------------------h------------------chhccCCceeeEEeecccccccc
Confidence            99876542 111110                       0                  01247789999997776663333


Q ss_pred             ceEEEeecCceEEEEeCC
Q 016982          352 TRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       352 ~~l~t~~~Dg~v~iW~~~  369 (379)
                      ..++.|-..|.|.+|+..
T Consensus       682 ~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  682 DVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ceEEEEecccEEEEEecc
Confidence            466777789999999976

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=192.59  Aligned_cols=298  Identities=14%  Similarity=0.144  Sum_probs=209.7

Q ss_pred             eEEEeCC---CCcEEEEEecCCeEEEEEecCCceE----EEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982           14 TCHAWSP---DHAMVAFCPNNNEVHIYKLIQEKWE----KLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus        14 ~~~~~s~---~~~~l~~~~~dg~i~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      .++.|++   ....||.+.++|.|.++|.....++    .+.....|.+.|..+.|.|....|++++.|.++++||+++.
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            3467765   3357899999999999998765433    23556789999999999996678999999999999999999


Q ss_pred             ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCce---------------------eEEEEEe--ec
Q 016982           87 EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNW---------------------WVSKLIR--KR  142 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~---------------------~~~~~~~--~~  142 (379)
                      ++...-...+|.+.|.+++|.| +...|++|+.||.+.|||++.....                     ...+...  ..
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            8777755689999999999999 4568899999999999999754300                     0000000  22


Q ss_pred             CCcCEEE---EEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecC---CcceEEEEECCC
Q 016982          143 HDSSVTS---VAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS---FSWAFGVKWSPS  215 (379)
Q Consensus       143 ~~~~v~~---~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~  215 (379)
                      +...|..   +.+..|...||+++. |+.|+|||++...-..+..+..          +..+..|   ...+.++.....
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~----------~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG----------SDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc----------ccCccCcccceeeeEEEEecCC
Confidence            3333444   445567888998887 9999999985332222222111          1111222   335788888888


Q ss_pred             CCEEEEEcCCCeEEEEECCCCCc-eeeeeeeecCC--eeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPSP-LAQNVAFRDLP--LRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERK  291 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~--i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~  291 (379)
                      |.+|++.+.|+.|++|++..... .+..+.++...  -..-..+||+.+++ ++.|...++|..+...  .         
T Consensus       283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~---------  351 (720)
T KOG0321|consen  283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--A---------  351 (720)
T ss_pred             CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--C---------
Confidence            99999888999999999887532 22223222111  11234578999888 6788899998765421  1         


Q ss_pred             cCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                                        ....+.||..+|++++|.+.+-    .-++||++|-++++|++.+
T Consensus       352 ----------------------------------~~~~l~Ght~eVt~V~w~pS~~----t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  352 ----------------------------------PPALLLGHTREVTTVRWLPSAT----TPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             ----------------------------------ChhhhhCcceEEEEEeeccccC----CCceeeccCcceEEEeccC
Confidence                                              1114579999999999654443    4578889999999999975

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.5e-28  Score=208.85  Aligned_cols=238  Identities=14%  Similarity=0.182  Sum_probs=209.5

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      .-|...|.++..-..++.+++|+.|..+.+|.+..-  ..+..+.+|..+|.++.|+++..+|++|+.+|+|++||++..
T Consensus        25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA  102 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA  102 (825)
T ss_pred             hhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence            446788888888778899999999999999988764  566678999999999999999999999999999999999998


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                      +.++.+  .+|...+.++.|+|-+.+.+.|+.|..+++||.+...   +...+ .+|...+..+.|+|+|++++.+++|.
T Consensus       103 k~vrtL--tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G---c~~~~-~s~~~vv~~l~lsP~Gr~v~~g~ed~  176 (825)
T KOG0267|consen  103 KIVRTL--TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG---CSHTY-KSHTRVVDVLRLSPDGRWVASGGEDN  176 (825)
T ss_pred             hhhhhh--hccccCcceeeeccceEEeccccccccceehhhhccC---ceeee-cCCcceeEEEeecCCCceeeccCCcc
Confidence            866655  7899999999999999999999999999999999766   45666 77999999999999999999999999


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR  246 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  246 (379)
                      .++|||.                  ..++.+..|..|.+.+..+.|+|..-+++.|+.|+++++||+++.. ++......
T Consensus       177 tvki~d~------------------~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-~I~s~~~~  237 (825)
T KOG0267|consen  177 TVKIWDL------------------TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-VISSGKPE  237 (825)
T ss_pred             eeeeecc------------------cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-EeeccCCc
Confidence            9999996                  6788899999999999999999999999999999999999998754 33444445


Q ss_pred             cCCeeeEEEecCCcEEEEEeCCCeE
Q 016982          247 DLPLRDVLFVSEKMVIGVGFDCNPM  271 (379)
Q Consensus       247 ~~~i~~~~~s~~~~~l~~~~d~~~~  271 (379)
                      ...|.+..|+|+++.+.+|....+.
T Consensus       238 ~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  238 TDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             cCCceeeeecCCceeeecCchhhhh
Confidence            6789999999999998887666555

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-26  Score=177.84  Aligned_cols=264  Identities=13%  Similarity=0.100  Sum_probs=214.9

Q ss_pred             EEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEE
Q 016982           35 HIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFA  114 (379)
Q Consensus        35 ~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  114 (379)
                      ..|...+-.+..++.+.+|.+.|..++.......+.+++.|.+-+||.++++.+...+  .+|.+.|.++.|++.+.+++
T Consensus       129 ssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y--~GH~GSVNsikfh~s~~L~l  206 (481)
T KOG0300|consen  129 SSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY--TGHTGSVNSIKFHNSGLLLL  206 (481)
T ss_pred             eeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee--cccccceeeEEeccccceEE
Confidence            3343333335677889999999999998777778999999999999999999976665  78999999999999999999


Q ss_pred             EEeCCCeEEEEEee----cCCc---------------------------------eeEEEEEeecCCcCEEEEEEcCCCc
Q 016982          115 VGSGAKTVCICYYE----QENN---------------------------------WWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus       115 ~~~~d~~v~i~~~~----~~~~---------------------------------~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      +++.|++-.||...    ..++                                 ....-.+ .+|.+.|.+..|...++
T Consensus       207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~gg~  285 (481)
T KOG0300|consen  207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAGGQ  285 (481)
T ss_pred             EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-eccccceEehhhhcCcc
Confidence            99999999998621    1000                                 0011122 68999999999999999


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      .+++++.|.+..+||+                  ++++.+..+.+|....+.++-+|..+++++++.|-+.++||++..-
T Consensus       286 Q~vTaSWDRTAnlwDV------------------Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDV------------------ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             eeeeeeccccceeeee------------------ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc
Confidence            9999999999999997                  8899999999999999999999999999999999999999999776


Q ss_pred             ceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982          238 PLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG  317 (379)
Q Consensus       238 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (379)
                      +-+..+++|...|+++.|..+.+.+.++.|.++++|++.+-..  .+.                       .+       
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs--plA-----------------------TI-------  395 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS--PLA-----------------------TI-------  395 (481)
T ss_pred             ceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC--cce-----------------------ee-------
Confidence            6778899999999999999999999999999999999765331  000                       00       


Q ss_pred             CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                    --..+++.++ .+..+    +.||---++..||++|++-
T Consensus       396 --------------RtdS~~NRva-vs~g~----~iIAiPhDNRqvRlfDlnG  429 (481)
T KOG0300|consen  396 --------------RTDSPANRVA-VSKGH----PIIAIPHDNRQVRLFDLNG  429 (481)
T ss_pred             --------------ecCCccceeE-eecCC----ceEEeccCCceEEEEecCC
Confidence                          1234567777 44333    5777778888999999854

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=6.3e-25  Score=189.87  Aligned_cols=287  Identities=14%  Similarity=0.150  Sum_probs=220.1

Q ss_pred             ecc-CcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            7 HQF-AQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         7 ~~~-~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      +.| .+.|+.++|..||+ .+|+|+..|.+.+||++..  +....+. .|.+.|....|.|....+++++.|+.+++|=.
T Consensus       240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k--kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK--KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC--eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence            445 49999999999996 5577777899999999987  4544444 78899999999999999999999999998866


Q ss_pred             cCCceeeeE--EeecCCCceeEEEEC-CCCCEEEEEeCCCeEEEEEee--------------------------------
Q 016982           84 EGSEWVPTL--VILRLNRAALCVQWS-PKENKFAVGSGAKTVCICYYE--------------------------------  128 (379)
Q Consensus        84 ~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~~~~--------------------------------  128 (379)
                      +++.-.+.+  .-.+|..+..++.|. .+|..+.+++.|++++.+++.                                
T Consensus       318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~  397 (910)
T KOG1539|consen  318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP  397 (910)
T ss_pred             eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence            644322211  225688888888887 477778888777766554432                                


Q ss_pred             ---------------------------------cCCceeEEEEEeec------CCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982          129 ---------------------------------QENNWWVSKLIRKR------HDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus       129 ---------------------------------~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                                                       ...   ..+.. ..      ....+++++.++.|++.+.|+..|.|-
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~---~G~~~-L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id  473 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT---SGRHV-LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID  473 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcc---cccEE-ecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence                                             111   00111 11      225688999999999999999999999


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEe---ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---------
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQL---DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS---------  237 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~---------  237 (379)
                      +|++                  +++-...++   ..|.++|++++...-++.+++++.+|.+++||..+..         
T Consensus       474 ~fNm------------------QSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~  535 (910)
T KOG1539|consen  474 RFNM------------------QSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS  535 (910)
T ss_pred             EEEc------------------ccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC
Confidence            9997                  666666666   5889999999999999999999999999999976532         


Q ss_pred             -------------------------------ceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEE
Q 016982          238 -------------------------------PLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIK  285 (379)
Q Consensus       238 -------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~  285 (379)
                                                     .+++.+.+|...|++++|||||++|+ ++.|++|++|+.....+.+...
T Consensus       536 ~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~  615 (910)
T KOG1539|consen  536 SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL  615 (910)
T ss_pred             CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence                                           12234557889999999999999988 7789999999988776555422


Q ss_pred             EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecC-ceEE
Q 016982          286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD-GKIV  364 (379)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~D-g~v~  364 (379)
                                                                     -..+.+.+. ++|.+    .+|||...| .-|+
T Consensus       616 -----------------------------------------------vd~~~~sls-~SPng----D~LAT~Hvd~~gIy  643 (910)
T KOG1539|consen  616 -----------------------------------------------VDSPCTSLS-FSPNG----DFLATVHVDQNGIY  643 (910)
T ss_pred             -----------------------------------------------cCCcceeeE-ECCCC----CEEEEEEecCceEE
Confidence                                                           345677888 77665    999999999 6799


Q ss_pred             EEeCC
Q 016982          365 TWDLE  369 (379)
Q Consensus       365 iW~~~  369 (379)
                      +|-=.
T Consensus       644 lWsNk  648 (910)
T KOG1539|consen  644 LWSNK  648 (910)
T ss_pred             EEEch
Confidence            99643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.3e-25  Score=192.87  Aligned_cols=244  Identities=19%  Similarity=0.268  Sum_probs=194.1

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      +.|....+.++|.|+|++|++++.||.|++|+..... +...++..+...|.+++-.  +++|++++.+++|.+|.+..+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence            4688899999999999999999999999999976542 2223333367778887765  558999999999999999888


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                      +....+  ....-++.+++|+-+|+++|.|+.|-.|++.++....   ..+.+ .+|.++|.++.|+|.+++||+.+-||
T Consensus        87 ~~~~iL--~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s---~~~~l-rgh~apVl~l~~~p~~~fLAvss~dG  160 (933)
T KOG1274|consen   87 EEDTIL--ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS---QEKVL-RGHDAPVLQLSYDPKGNFLAVSSCDG  160 (933)
T ss_pred             Ccccee--eeeeccceEEEEecCCcEEEeecCceeEEEEeccccc---hheee-cccCCceeeeeEcCCCCEEEEEecCc
Confidence            643333  4567899999999999999999999999998887776   35566 89999999999999999999999999


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEeec-------C-CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-------S-FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      .|++||+                  ..+.+..++.+       . ...+..++|+|+|..|+..+.|+.|++|+..+...
T Consensus       161 ~v~iw~~------------------~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  161 KVQIWDL------------------QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL  222 (933)
T ss_pred             eEEEEEc------------------ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence            9999998                  33333333221       1 34567899999988888888999999999877654


Q ss_pred             eeeeee-eecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          239 LAQNVA-FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       239 ~~~~~~-~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      ...... .+...+..+.|+|+|+||| ++.++.|.||+.+.
T Consensus       223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            322222 2234488999999999999 55799999999663

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.4e-24  Score=180.63  Aligned_cols=209  Identities=14%  Similarity=0.163  Sum_probs=170.8

Q ss_pred             cceecc-CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            4 IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      +.++++ ...|.+++|++ +.+|++.+.+|.|.-||+.+.  +....+....+.|.+++.+|.+..++.|+.||.+..++
T Consensus        62 ~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l--k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   62 PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL--KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC--ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence            456666 56899999995 556777778899999999997  67778888889999999999999999999999888888


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEE-E---eecCCcCEEEEEEcCCCcE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKL-I---RKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~---~~~~~~~v~~~~~~p~~~~  158 (379)
                      ...+.......+...++++.+++|+|++..++.|+.||.|++||...+........ +   ......-|+++.|-.+ ..
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~t  217 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-ST  217 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-Cc
Confidence            88887665555566779999999999999999999999999999998874221111 1   0112334677777754 46


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      |++|...|+|.+||.                  ..+..++.+..|...|.+++.++++.++++++.|+.|.-|...
T Consensus       218 I~sgDS~G~V~FWd~------------------~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  218 IASGDSAGTVTFWDS------------------IFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             EEEecCCceEEEEcc------------------cCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence            999999999999995                  7788889999999999999999999999999998887777543

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6.7e-27  Score=183.54  Aligned_cols=246  Identities=16%  Similarity=0.186  Sum_probs=195.1

Q ss_pred             EEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           46 KLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        46 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      .+..|.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+.++...+  ..|.+.|..+++..  ..+++++.|++|+.
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f--~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF--KAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee--ecccCceeeEEecc--cceEEecCCcceee
Confidence            455678999999999999987 78999999999999999998866666  78999999999986  67889999999999


Q ss_pred             EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                      |-++...    .+.+  .....+..+.-+..+..++|++.+  |.|||.                  .-..++.++....
T Consensus       134 wk~~~~p----~~ti--lg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~------------------~R~~Pv~smswG~  187 (433)
T KOG0268|consen  134 WKIDGPP----LHTI--LGKSVYLGIDHHRKNSVFATCGEQ--IDIWDE------------------QRDNPVSSMSWGA  187 (433)
T ss_pred             eeccCCc----ceee--eccccccccccccccccccccCce--eeeccc------------------ccCCccceeecCC
Confidence            9988752    4443  345667778777778889998765  899996                  4556778887777


Q ss_pred             cceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCCcEE
Q 016982          205 SWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETGIWT  282 (379)
Q Consensus       205 ~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~~~~  282 (379)
                      ..|.++.|+|. ...|++++.|+.|.+||+++..++.+...  ...-+.++|+|.+- ++++..|.+++.|+...-.  .
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~  263 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--R  263 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhc--c
Confidence            88999999995 45677888999999999999887644443  44567899999654 4457778888887754311  0


Q ss_pred             EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCce
Q 016982          283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK  362 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  362 (379)
                                             .+.                    ...+|...|.+|+ |+|.|    +-|+|||.|.+
T Consensus       264 -----------------------p~~--------------------v~~dhvsAV~dVd-fsptG----~EfvsgsyDks  295 (433)
T KOG0268|consen  264 -----------------------PLN--------------------VHKDHVSAVMDVD-FSPTG----QEFVSGSYDKS  295 (433)
T ss_pred             -----------------------cch--------------------hhcccceeEEEec-cCCCc----chhccccccce
Confidence                                   011                    3368999999999 87665    99999999999


Q ss_pred             EEEEeCCCccc
Q 016982          363 IVTWDLESQED  373 (379)
Q Consensus       363 v~iW~~~~~~~  373 (379)
                      |||+..+.+..
T Consensus       296 IRIf~~~~~~S  306 (433)
T KOG0268|consen  296 IRIFPVNHGHS  306 (433)
T ss_pred             EEEeecCCCcc
Confidence            99999987644

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.95  E-value=2.1e-25  Score=176.12  Aligned_cols=245  Identities=18%  Similarity=0.277  Sum_probs=188.2

Q ss_pred             eccCcceeEEEeCCCC--cEEEEEecCCeEEEEEecC--------------CceEEEEEeccCCCceEEEEEcCCC-CEE
Q 016982            7 HQFAQCITCHAWSPDH--AMVAFCPNNNEVHIYKLIQ--------------EKWEKLHVLQKHDQIVSGIDWSVRS-NRI   69 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l   69 (379)
                      ..|.+.+..+.-++-+  .+.|+-+..|.|+||++..              .+.+++.++.+|...=++|.|||-. ..|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            4566777777777654  4566667899999999852              2356788999999988999999943 357


Q ss_pred             EEEeCCCeEEEEeccCCceeee-EEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE
Q 016982           70 VTVSHDRNSYVWNQEGSEWVPT-LVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV  147 (379)
Q Consensus        70 ~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v  147 (379)
                      ++|..-+.|++|...++.+..- ..+.+|+..|..++|+|. ...|++|+-||+|+|||++.+....+  .+.+.|.+.|
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~--~~~kAh~sDV  305 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA--VSTKAHNSDV  305 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce--eEeeccCCce
Confidence            8888888999999988865432 223569999999999995 56899999999999999998853222  2227899999


Q ss_pred             EEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCC
Q 016982          148 TSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNS  226 (379)
Q Consensus       148 ~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~  226 (379)
                      +.+.|+..-.+|++|+.||+++|||++.               .+.++++..|..|..+|+++.|+|. ...|++++.|.
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~---------------~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~  370 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQ---------------FKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN  370 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhh---------------ccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence            9999998888999999999999999731               2456889999999999999999994 56788888999


Q ss_pred             eEEEEECCCCCc---------------eeeeeeee--cCCeeeEEEecC--CcEEEEEeCC
Q 016982          227 MIYFVDDVGPSP---------------LAQNVAFR--DLPLRDVLFVSE--KMVIGVGFDC  268 (379)
Q Consensus       227 ~i~v~d~~~~~~---------------~~~~~~~~--~~~i~~~~~s~~--~~~l~~~~d~  268 (379)
                      +|.+||+.-...               ..+.+-.|  ...+..+.|++.  |.++.++.||
T Consensus       371 QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  371 QITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             cEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence            999999753211               01122234  345788999985  4455566665

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.95  E-value=1.2e-24  Score=173.36  Aligned_cols=312  Identities=18%  Similarity=0.262  Sum_probs=219.3

Q ss_pred             eecc-CcceeEEEeCCCCc-EEEEEecCCeEEEEEecCC-------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 016982            6 VHQF-AQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQE-------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR   76 (379)
Q Consensus         6 ~~~~-~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   76 (379)
                      +.-| ..+|..+.|.++.. +||+|+.|..|+||.+..+       +.+.+..|..|...|+++.|+|+|+.|++|+.+|
T Consensus         8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g   87 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG   87 (434)
T ss_pred             EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence            3344 57999999998776 9999999999999998643       3566778899999999999999999999999999


Q ss_pred             eEEEEecc--------C------CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec
Q 016982           77 NSYVWNQE--------G------SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR  142 (379)
Q Consensus        77 ~i~vw~~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  142 (379)
                      .+.+|...        +      ..++.......|...+..++|+|+++++++++.|..+++||+..+.   +...+ ..
T Consensus        88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~---l~~~~-~d  163 (434)
T KOG1009|consen   88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ---LLAIL-DD  163 (434)
T ss_pred             eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce---eEeec-cc
Confidence            99999866        2      2344455566789999999999999999999999999999999998   55566 89


Q ss_pred             CCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccc--cCCCccC-CcccceEEEeec--CCcceEEEEECCCCC
Q 016982          143 HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEK--KEGTSSD-TKFGEQILQLDL--SFSWAFGVKWSPSGN  217 (379)
Q Consensus       143 ~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~--~~~~v~~~~~sp~~~  217 (379)
                      |...+..++|.|-++++++-+.|...+.+.+...+...+..  ..+.... ...+...+.+..  -..-...++|+|+|.
T Consensus       164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            99999999999999999999999877777664322221111  0000000 011122222211  122357789999999


Q ss_pred             EEEEEcC----C-----CeEEEEECCCCCceeeeeeeecCCeeeEEEec------------------CCcEEEEEeCCCe
Q 016982          218 TLAYVGH----N-----SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS------------------EKMVIGVGFDCNP  270 (379)
Q Consensus       218 ~l~~~~~----d-----~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~d~~~  270 (379)
                      +|++.+.    .     +..++|+-..-++....+.....+...+.|+|                  -+..+|.+..+.+
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~sv  323 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSV  323 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceE
Confidence            9988642    2     23456654433334445555555555666654                  1223445666677


Q ss_pred             EEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcc
Q 016982          271 MVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSR  350 (379)
Q Consensus       271 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  350 (379)
                      ++|+.....-.-+..                                             .-|-..|+.++ |+++|   
T Consensus       324 yvydtq~~~P~~~v~---------------------------------------------nihy~~iTDia-ws~dg---  354 (434)
T KOG1009|consen  324 YVYDTQTLEPLAVVD---------------------------------------------NIHYSAITDIA-WSDDG---  354 (434)
T ss_pred             EEeccccccceEEEe---------------------------------------------eeeeeeeccee-ecCCC---
Confidence            777654332222211                                             34888999999 77666   


Q ss_pred             cceEEEeecCceEEEEeCCCc
Q 016982          351 ITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       351 ~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                       .+|+-.|.||...+=-++..
T Consensus       355 -~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  355 -SVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             -cEEEEeccCCceEEEEEcch
Confidence             89999999998777665543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=3.2e-23  Score=169.80  Aligned_cols=285  Identities=12%  Similarity=0.166  Sum_probs=214.7

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCce-EEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW-EKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ...++.|..+.|+|.+..|+.....+.+..|+.+++.+ +....++.++ ..|.|+.|.++|+ +++|..+|.|.||+..
T Consensus       197 k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  197 KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG  275 (626)
T ss_pred             eeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence            34467788999999665554444568999999988743 2333444443 5799999999985 6799999999999997


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce-----------------------------eE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW-----------------------------WV  135 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-----------------------------~~  135 (379)
                      +.+.....  ..|.+.|.+++.-.+|.++- |+.|+.|..||-+-.+..                             -+
T Consensus       276 ~~~~~k~~--~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL  352 (626)
T KOG2106|consen  276 TNRISKQV--HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL  352 (626)
T ss_pred             CceEEeEe--eecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence            77654444  48999999999999997655 999999999984322100                             00


Q ss_pred             E-------EEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceE
Q 016982          136 S-------KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF  208 (379)
Q Consensus       136 ~-------~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  208 (379)
                      .       .....+|......++.+|+.+++++++.|+.+++|+-                    .+++-+.. -..+..
T Consensus       353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~--------------------~k~~wt~~-~~d~~~  411 (626)
T KOG2106|consen  353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND--------------------HKLEWTKI-IEDPAE  411 (626)
T ss_pred             EeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC--------------------CceeEEEE-ecCcee
Confidence            0       0111467778889999999999999999999999962                    22222222 145688


Q ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEe
Q 016982          209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFL  287 (379)
Q Consensus       209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~  287 (379)
                      ++.|+|.| .++.|...|...+.|..+. .++..-. .+.+++.+.|+|+|.+|| ++.|+.+++|..+.++ ..+.+. 
T Consensus       412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g-~~y~r~-  486 (626)
T KOG2106|consen  412 CADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG-RKYSRV-  486 (626)
T ss_pred             EeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC-cEEEEe-
Confidence            99999999 8999999999999998883 3434333 388999999999999999 7789999999988766 222110 


Q ss_pred             cccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          288 DERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                                                -..|..+|+.+. |+.|+    ++|.+-+-|-.|.+|.
T Consensus       487 ------------------------------------------~k~~gs~ithLD-wS~Ds----~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  487 ------------------------------------------GKCSGSPITHLD-WSSDS----QFLVSNSGDYEILYWK  519 (626)
T ss_pred             ------------------------------------------eeecCceeEEee-ecCCC----ceEEeccCceEEEEEc
Confidence                                                      023448999999 87776    9999999999999994


Q ss_pred             C
Q 016982          368 L  368 (379)
Q Consensus       368 ~  368 (379)
                      .
T Consensus       520 ~  520 (626)
T KOG2106|consen  520 P  520 (626)
T ss_pred             c
Confidence            3

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=6.4e-26  Score=185.49  Aligned_cols=239  Identities=16%  Similarity=0.174  Sum_probs=201.5

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      .-..-|.++.+.|||+.|++|++-.++.|||+..........+......+.+++.+||.+..+++..||.|.|||+.+..
T Consensus       463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence            34567899999999999999999999999999876545555555555678899999999999999999999999999998


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      .++.+  .+|...+.||.++++|..|.+|+-|++|+-||++++..     .........|.++..+|++.+++.|-.++.
T Consensus       543 ~Vrqf--qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-----lqqhdF~SQIfSLg~cP~~dWlavGMens~  615 (705)
T KOG0639|consen  543 LVRQF--QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-----LQQHDFSSQIFSLGYCPTGDWLAVGMENSN  615 (705)
T ss_pred             eeecc--cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-----hhhhhhhhhheecccCCCccceeeecccCc
Confidence            77766  88999999999999999999999999999999998762     221345678999999999999999999999


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD  247 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  247 (379)
                      +.|...                   ++...+.+..|...|.++.|++.|+++++.+.|+.+..|.+.-+..+.+ .+ ..
T Consensus       616 vevlh~-------------------skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq-sk-E~  674 (705)
T KOG0639|consen  616 VEVLHT-------------------SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SK-ES  674 (705)
T ss_pred             EEEEec-------------------CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee-cc-cc
Confidence            988864                   4555667778899999999999999999999999999998777665433 22 36


Q ss_pred             CCeeeEEEecCCcEEEEEe-CCCeEEEE
Q 016982          248 LPLRDVLFVSEKMVIGVGF-DCNPMVFA  274 (379)
Q Consensus       248 ~~i~~~~~s~~~~~l~~~~-d~~~~i~~  274 (379)
                      .+|.++..|.|.++|++|+ |....+|.
T Consensus       675 SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  675 SSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             CcceeeeeccCceEEEecCCCcceEEEE
Confidence            7899999999999999654 44666664

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.3e-24  Score=175.72  Aligned_cols=254  Identities=19%  Similarity=0.197  Sum_probs=190.7

Q ss_pred             eccCcceeEEEeCCCC--cEEEEEecCCeEEEEEecCC--ceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEE
Q 016982            7 HQFAQCITCHAWSPDH--AMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVW   81 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw   81 (379)
                      .-+...|++++|+|..  +++|+|...|.|-+||+.+.  ....+..+..|..+|.++.|+|.. ..+++.+.||+|++-
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~  262 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ  262 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence            4467899999999954  57889989999999999522  235567788899999999999976 688999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLA  160 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~  160 (379)
                      |+++......+...........+.|+.+...++.+..=|...+||.+++...  ...+ .-|...|..++++|.. .+|+
T Consensus       263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~--~~~~-~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE--YENL-RLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc--chhh-hhhhcccceeecCCCCchhee
Confidence            9998865445443334566788889888777888877779999999988731  2333 5688899999999965 7889


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC---CCC
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV---GPS  237 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~---~~~  237 (379)
                      +++.|++++|||++.    ++          ....++.....|...|.+..|||++..|++.+.|..|+|||..   ..-
T Consensus       340 T~s~D~T~kIWD~R~----l~----------~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~  405 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQ----LR----------GKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD  405 (498)
T ss_pred             ecccCcceeeeehhh----hc----------CCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence            999999999999731    11          0111234445688899999999988779999999999999973   222


Q ss_pred             ceeeeeeeecC------CeeeEEEecCCcEEEEE-eCCCeEEEEecCC
Q 016982          238 PLAQNVAFRDL------PLRDVLFVSEKMVIGVG-FDCNPMVFAADET  278 (379)
Q Consensus       238 ~~~~~~~~~~~------~i~~~~~s~~~~~l~~~-~d~~~~i~~~~~~  278 (379)
                      +...++. |+.      ......|.|+..+++.+ .-..|-+|+.+..
T Consensus       406 ~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~  452 (498)
T KOG4328|consen  406 EPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG  452 (498)
T ss_pred             Cccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence            2223333 321      24567899998888854 5556767665443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.4e-24  Score=188.23  Aligned_cols=245  Identities=16%  Similarity=0.185  Sum_probs=194.8

Q ss_pred             ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC
Q 016982           51 QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE  130 (379)
Q Consensus        51 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~  130 (379)
                      ..|....+.++|.|+|++|++++.||.|++|+.....-.+... ..+...|.+++..  ++.|++++.+++|.+|.+..+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence            3578888999999999999999999999999987763223221 2256677776654  669999999999999999888


Q ss_pred             CceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEE
Q 016982          131 NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGV  210 (379)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  210 (379)
                      ..   ...+ ....-++.+++|+-+|+++|.|+.|-.|++.++                  ........+.+|.++|.++
T Consensus        87 ~~---~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~------------------~D~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   87 EE---DTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL------------------DDSSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             Cc---ccee-eeeeccceEEEEecCCcEEEeecCceeEEEEec------------------cccchheeecccCCceeee
Confidence            73   2233 455678999999999999999999999999996                  5667778899999999999


Q ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-------e-cCCeeeEEEecC-CcEEEEEeCCCeEEEEecCCCcE
Q 016982          211 KWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-------R-DLPLRDVLFVSE-KMVIGVGFDCNPMVFAADETGIW  281 (379)
Q Consensus       211 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~-~~~i~~~~~s~~-~~~l~~~~d~~~~i~~~~~~~~~  281 (379)
                      .|+|++++||+.+.||.|++||+.++.. ..++.+       . ...+..++|+|+ |++++.+.|+.|.+|...+   |
T Consensus       145 ~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~---w  220 (933)
T KOG1274|consen  145 SYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG---W  220 (933)
T ss_pred             eEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC---c
Confidence            9999999999999999999999987642 233221       1 334678999998 6777799999999998664   6


Q ss_pred             EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982          282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG  361 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg  361 (379)
                      .....+..                                         .-|...+.++. |+|.|    .|||+++.||
T Consensus       221 e~~f~Lr~-----------------------------------------~~~ss~~~~~~-wsPnG----~YiAAs~~~g  254 (933)
T KOG1274|consen  221 ELQFKLRD-----------------------------------------KLSSSKFSDLQ-WSPNG----KYIAASTLDG  254 (933)
T ss_pred             eeheeecc-----------------------------------------cccccceEEEE-EcCCC----cEEeeeccCC
Confidence            65443321                                         22444577788 87766    9999999999


Q ss_pred             eEEEEeCCC
Q 016982          362 KIVTWDLES  370 (379)
Q Consensus       362 ~v~iW~~~~  370 (379)
                      .|.|||.++
T Consensus       255 ~I~vWnv~t  263 (933)
T KOG1274|consen  255 QILVWNVDT  263 (933)
T ss_pred             cEEEEeccc
Confidence            999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=2.3e-24  Score=167.05  Aligned_cols=248  Identities=15%  Similarity=0.192  Sum_probs=188.5

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCc----------eEEEEEec-cCCCceEEEEEc-------CCCCEEEEEeC
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK----------WEKLHVLQ-KHDQIVSGIDWS-------VRSNRIVTVSH   74 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~----------~~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~   74 (379)
                      ...+.|+|||..|++-+.|..+.+|++...-          .+....++ .....|....|-       |+.+++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4568999999999999999999999985320          01111111 123457777774       66789999999


Q ss_pred             CCeEEEEeccCCceeeeEEeecCCC---ceeEEEECCCCCEEEEEeCCCeEEEEEe-ecCCceeEEEEEe---ecCCcCE
Q 016982           75 DRNSYVWNQEGSEWVPTLVILRLNR---AALCVQWSPKENKFAVGSGAKTVCICYY-EQENNWWVSKLIR---KRHDSSV  147 (379)
Q Consensus        75 d~~i~vw~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~---~~~~~~v  147 (379)
                      +.-|++||.-+++....+....|..   ...+++|+|||.+|++|. ..+|++||+ +.+........+.   .+..+-+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            9999999999998777776555554   457899999999998876 589999998 4443222222221   2446788


Q ss_pred             EEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CC
Q 016982          148 TSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HN  225 (379)
Q Consensus       148 ~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d  225 (379)
                      .+++|+|-. +.++.++....+-||.-                  ....++..+-+|.+.|+.+.|.++|+.|++|+ .|
T Consensus       211 sc~a~sP~~~~~~a~gsY~q~~giy~~------------------~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~  272 (406)
T KOG2919|consen  211 SCFAFSPMDSKTLAVGSYGQRVGIYND------------------DGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD  272 (406)
T ss_pred             eeeeccCCCCcceeeecccceeeeEec------------------CCCCceeeecccCCCeeeEEeccCcCeecccccCC
Confidence            999999965 68999999998888873                  45677888889999999999999999999987 46


Q ss_pred             CeEEEEECCCCCceeeeeeeecC-CeeeEEE--ecCCcEEEEE-eCCCeEEEEecCCC
Q 016982          226 SMIYFVDDVGPSPLAQNVAFRDL-PLRDVLF--VSEKMVIGVG-FDCNPMVFAADETG  279 (379)
Q Consensus       226 ~~i~v~d~~~~~~~~~~~~~~~~-~i~~~~~--s~~~~~l~~~-~d~~~~i~~~~~~~  279 (379)
                      ..|..||++.....+..+..|.. .-..|.|  .|++++|++| .+|.|++|+...-+
T Consensus       273 dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  273 DKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             CeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC
Confidence            78999999998777777776654 3445555  4789999966 89999999987655

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8.5e-25  Score=176.97  Aligned_cols=248  Identities=14%  Similarity=0.116  Sum_probs=196.6

Q ss_pred             CcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982           10 AQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ-IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus        10 ~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      ..+|.+++|.|+|. .+++++.....+.||+.+.+..++..+.++.. .+.....+|++++|+..+..|.|.+....+++
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e  336 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE  336 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence            57899999999998 89999999999999999987777777777653 56778899999999999999999999999999


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      ++..+.+   .+.|..+.|+.+++.|++++.+|.|.+||++...   +...+...-.-.-+.++.++++.+||+|+..|.
T Consensus       337 li~s~Ki---eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~---~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi  410 (514)
T KOG2055|consen  337 LITSFKI---EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS---CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI  410 (514)
T ss_pred             hhheeee---ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc---eEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence            7777754   6889999999999999999999999999999986   455552222223466777889999999999999


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc--CCCeEEEEECCCCCceeeeeee
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--HNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      |.|||......            ....+++..+..-...|+++.|+|+++.|+.+|  .+..+++..+.+.. +...+..
T Consensus       411 VNIYd~~s~~~------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T-VFsNfP~  477 (514)
T KOG2055|consen  411 VNIYDGNSCFA------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT-VFSNFPT  477 (514)
T ss_pred             EEEeccchhhc------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee-eeccCCC
Confidence            99998521111            133456666666677899999999999999887  45788988876643 2222222


Q ss_pred             e---cCCeeeEEEecCCcEEEEE-eCCCeEEEEec
Q 016982          246 R---DLPLRDVLFVSEKMVIGVG-FDCNPMVFAAD  276 (379)
Q Consensus       246 ~---~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~  276 (379)
                      .   -+.+++++|||.|.++|.| .++.+.+|.+.
T Consensus       478 ~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  478 SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            2   3458999999999999855 56788888753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=5.7e-24  Score=162.91  Aligned_cols=205  Identities=16%  Similarity=0.131  Sum_probs=165.5

Q ss_pred             ccCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeccCCc----------eee---eEEeecCCCceeEEEECC-CCCEEEE
Q 016982           51 QKHDQIVSGIDWSVR-SNRIVTVSHDRNSYVWNQEGSE----------WVP---TLVILRLNRAALCVQWSP-KENKFAV  115 (379)
Q Consensus        51 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~----------~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~  115 (379)
                      ..|.+.|+++.+.+. |+++++|+.||.|.+||++...          .+.   .-....|+-.|.++.|-| |...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            458899999999874 6999999999999999997642          011   111234677899999999 6678888


Q ss_pred             EeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC---CcEEEEeeCCCeEEEEeccccccccccccCCCccCCc
Q 016982          116 GSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN---NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTK  192 (379)
Q Consensus       116 ~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  192 (379)
                      ++.|.++++||.++.+.   ...  ...++.|++-+++|-   ..++|+|..+-.|++.|+                  .
T Consensus       120 sSFDhtlKVWDtnTlQ~---a~~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi------------------~  176 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQE---AVD--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI------------------A  176 (397)
T ss_pred             ccccceEEEeeccccee---eEE--eecCceeehhhcChhhhcceEEEEecCCCcEEEEec------------------c
Confidence            99999999999998762   333  367788899999984   357888999999999997                  8


Q ss_pred             ccceEEEeecCCcceEEEEECCCCCE-EEEEcCCCeEEEEECCCCCceeee--------------eeeecCCeeeEEEec
Q 016982          193 FGEQILQLDLSFSWAFGVKWSPSGNT-LAYVGHNSMIYFVDDVGPSPLAQN--------------VAFRDLPLRDVLFVS  257 (379)
Q Consensus       193 ~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~--------------~~~~~~~i~~~~~s~  257 (379)
                      ++.+.+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++...-+...              -..|.+.+++++|+.
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            89999999999999999999997665 778999999999998764222222              234667799999999


Q ss_pred             CCcEEE-EEeCCCeEEEEecCC
Q 016982          258 EKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       258 ~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      ++.+++ ++.|..+++|+...+
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             cchhhhhccCccceEEeecccC
Confidence            999887 889999999997654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=7.8e-24  Score=170.67  Aligned_cols=241  Identities=18%  Similarity=0.250  Sum_probs=171.9

Q ss_pred             EEEeCCCCcEEEEEecCC-----eEEEEEecCCceEEEEEeccCCCceEEEEEcCC-------CCEEEEEeCCCeEEEEe
Q 016982           15 CHAWSPDHAMVAFCPNNN-----EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR-------SNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~vw~   82 (379)
                      .+..-|+.++++++-.+.     .|++|+-....+-..+-+.- ...-.|++|...       |+++|.|+.|..|.|||
T Consensus       130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~il-pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD  208 (463)
T KOG0270|consen  130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFIL-PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD  208 (463)
T ss_pred             cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceec-cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence            345557667777765432     35555544322111111111 123356777432       58999999999999999


Q ss_pred             ccCCc-eeee------------------EEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeec
Q 016982           83 QEGSE-WVPT------------------LVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR  142 (379)
Q Consensus        83 ~~~~~-~~~~------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  142 (379)
                      +.-.. ..+.                  ....+|+..|.+++|+.. .+.||+|+.|.+|++||+.+++   +...+ ..
T Consensus       209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---p~~s~-~~  284 (463)
T KOG0270|consen  209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK---PKSSI-TH  284 (463)
T ss_pred             cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC---cceeh-hh
Confidence            85321 1111                  112357778889999874 5689999999999999999998   45666 67


Q ss_pred             CCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEE
Q 016982          143 HDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLA  220 (379)
Q Consensus       143 ~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~  220 (379)
                      |...|.++.|+|.. ..|++|+.|+++.+.|.+                 .....-..+.. .+.|-.++|.|. ...++
T Consensus       285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R-----------------~~~~s~~~wk~-~g~VEkv~w~~~se~~f~  346 (463)
T KOG0270|consen  285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR-----------------DPSNSGKEWKF-DGEVEKVAWDPHSENSFF  346 (463)
T ss_pred             cCCceeEEEecCCCceEEEeccccceEEeeecc-----------------CccccCceEEe-ccceEEEEecCCCceeEE
Confidence            99999999999964 899999999999999973                 11111122222 456899999995 45567


Q ss_pred             EEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecCC
Q 016982          221 YVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~~  278 (379)
                      ++..||+++-+|++....++.+++.|..+|.++++++.-. +++ ++.|+.+.+|++...
T Consensus       347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence            7789999999999999888899999999999999998543 444 788999999987754

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=7.9e-25  Score=186.49  Aligned_cols=245  Identities=18%  Similarity=0.188  Sum_probs=202.1

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC---CCEEEEEeCCCeEEEEeccC
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR---SNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~vw~~~~   85 (379)
                      -.-.+.+++.||+|++||+|..-|++++|++..-  +....+..|...|.|+.|+-.   .++|++++.|..|.+||+..
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            3567999999999999999999999999999875  677778999999999999853   36899999999999999876


Q ss_pred             CceeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCeEEEEEeecCCceeEEEEEe----ecCCcCEEEEEEcCCCcEE
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQENNWWVSKLIR----KRHDSSVTSVAWHPNNVFL  159 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~l  159 (379)
                      .- .....+.+|...|+++.|.-+|  ..+++++.|+.|.+ +......  -...+.    ......+++++..|..+++
T Consensus       536 ny-~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~--~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v  611 (1080)
T KOG1408|consen  536 NY-DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKAS--SGRLFPRHTQTLSKTTLYDMAVDPTSKLV  611 (1080)
T ss_pred             cc-chhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhcccc--CceeccccccccccceEEEeeeCCCcceE
Confidence            52 2333447899999999998877  67889999988754 3332110  122221    1223578999999999999


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec---CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL---SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      ++++.|..|+|||+                  ..+++.+.|.+   |.+....+...|.|.||++.+.|.++.++|..++
T Consensus       612 ~t~cQDrnirif~i------------------~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg  673 (1080)
T KOG1408|consen  612 VTVCQDRNIRIFDI------------------ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG  673 (1080)
T ss_pred             EEEecccceEEEec------------------cccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence            99999999999998                  77888888854   5677889999999999999999999999999988


Q ss_pred             CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982          237 SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       237 ~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      + ++..+.+|...|+.+.|.+|-+.|. ++.|+.|.+|.+...
T Consensus       674 E-cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  674 E-CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             h-hhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            7 5688899999999999999977555 889999999987653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=162.93  Aligned_cols=253  Identities=20%  Similarity=0.214  Sum_probs=185.5

Q ss_pred             ceeEEEeCCCCcEEEEEe-cCCeEEEEEecCCc---e-------EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982           12 CITCHAWSPDHAMVAFCP-NNNEVHIYKLIQEK---W-------EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~---~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      -.+.++|+||-+-+++.. +...+++|.+...+   .       .....-+.|.-.+..+-...++.+|++++.|..|.+
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l  213 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL  213 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence            567899999987665544 45689999876431   0       111122346667778888888899999999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce---eEEE--EEeecCCcCEEEEEEcCC
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW---WVSK--LIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~--~~~~~~~~~v~~~~~~p~  155 (379)
                      |++. |+....+  ......-+..+.+|+|+++++++..-.|++|..--.+..   ++.+  .+ .+|...|..++|+|+
T Consensus       214 w~lk-Gq~L~~i--dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  214 WDLK-GQLLQSI--DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNS  289 (420)
T ss_pred             EecC-Cceeeee--ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCC
Confidence            9998 6655554  334455678899999999999999889999987543211   1112  23 799999999999999


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      ...+++.+.||+++|||+     +.|+....-+...+.+.  .-+....+....+.++|+|+.|+.+ ....+++|..+.
T Consensus       290 S~r~vtvSkDG~wriwdt-----dVrY~~~qDpk~Lk~g~--~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~  361 (420)
T KOG2096|consen  290 STRAVTVSKDGKWRIWDT-----DVRYEAGQDPKILKEGS--APLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASED  361 (420)
T ss_pred             cceeEEEecCCcEEEeec-----cceEecCCCchHhhcCC--cchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEccc
Confidence            999999999999999998     66655432222222222  1112223344589999999998875 456799999888


Q ss_pred             CCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          236 PSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       236 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      ++.....-..|...|.+++|+++|++++++.|..++++...
T Consensus       362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~nt  402 (420)
T KOG2096|consen  362 GKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNT  402 (420)
T ss_pred             CccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecCC
Confidence            76543444568899999999999999999999999988643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.8e-24  Score=170.19  Aligned_cols=321  Identities=14%  Similarity=0.163  Sum_probs=220.9

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC----ceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE----KWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      +.+|.++|.++.|+.++++||+|+.|..+++|++..-    ..+++.... .|...|.|++|.....++++|..+++|.+
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            5689999999999999999999999999999998642    113444333 35578999999998999999999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFL  159 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l  159 (379)
                      .|+++.+.+..+.-....+.|+.+..+|..+.|++.+.++.|.+||.+...+......+ .........+.|+|.. .+|
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCceeE
Confidence            99999985555443334469999999999999999999999999999876631111112 3445677889999965 788


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      ++.+..+-+.+||++       .+..+..   + ......++.....-.++.|+|+|..|++-.....-.+||+-+....
T Consensus       211 ~~~~~~~G~~~~D~R-------~~~~~~~---~-~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~  279 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRR-------MQARPVY---Q-RSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF  279 (609)
T ss_pred             EeccccCCCCceeec-------cccchHH---h-hhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence            888889999999873       1111000   0 0001111111223467899999999988776666778887764432


Q ss_pred             eeeee-e-----ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC---cEEEEEEecccccCCCCCccCCCccccccee
Q 016982          240 AQNVA-F-----RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG---IWTFIKFLDERKTSSSGPKYGSQFSEAFGKL  310 (379)
Q Consensus       240 ~~~~~-~-----~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (379)
                      +.... .     ....+.+++|..|-.++.++.+-.+++|.+....   -+..+..-++.        ++..+      |
T Consensus       280 V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~--------~~~~~------~  345 (609)
T KOG4227|consen  280 VLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEE--------MPSEI------F  345 (609)
T ss_pred             eEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhh--------Cchhh------e
Confidence            22222 1     1124778888877665556667799999865321   11111110000        00000      0


Q ss_pred             eccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          311 YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                  .+.....+.||..-++.|. |++..    .+|++.|....+++|.-.
T Consensus       346 ------------i~~~~~VLrGHRSv~NQVR-F~~H~----~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  346 ------------IEKELTVLRGHRSVPNQVR-FSQHN----NLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ------------ecceeEEEeccccccccee-ecCCc----ceEeccchhhheeccccc
Confidence                        1122236689999999999 87776    899999999999999754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.93  E-value=8.7e-24  Score=161.39  Aligned_cols=307  Identities=18%  Similarity=0.192  Sum_probs=206.9

Q ss_pred             CCcEEEEEec----CCeEEEEEecCCceEE-EEEeccCCCceEEEEEcCCCC-EEEEEeCC-------CeEEEEeccCCc
Q 016982           21 DHAMVAFCPN----NNEVHIYKLIQEKWEK-LHVLQKHDQIVSGIDWSVRSN-RIVTVSHD-------RNSYVWNQEGSE   87 (379)
Q Consensus        21 ~~~~l~~~~~----dg~i~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d-------~~i~vw~~~~~~   87 (379)
                      +.-.|++|..    |+.|.+.+++.+.... ...|..|.+.|..++-+|-.+ .|+++..+       -...||.+....
T Consensus        25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~  104 (370)
T KOG1007|consen   25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL  104 (370)
T ss_pred             cceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence            3445666653    7889988887653222 345677889999999999765 45555432       247899986542


Q ss_pred             ---------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee--EEEEEeecCCcCEEEEEEcC--
Q 016982           88 ---------WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW--VSKLIRKRHDSSVTSVAWHP--  154 (379)
Q Consensus        88 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~p--  154 (379)
                               ++..+. ..+-+.+.|+.|.|++..+++-. |..|.+|++.......  +.......+....++-+|+|  
T Consensus       105 ~~S~~~tlE~v~~Ld-teavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH  182 (370)
T KOG1007|consen  105 GQSNSSTLECVASLD-TEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH  182 (370)
T ss_pred             CccccchhhHhhcCC-HHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence                     122221 13446899999999999988877 7889999998776411  11111134567788899999  


Q ss_pred             CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCC-EEEEEcCCCeEEEEE
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGN-TLAYVGHNSMIYFVD  232 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~v~d  232 (379)
                      +++.+++. .|+++..||+                  ++.++...+ ..|...|..+.|+|+.+ +|++++.||.|++||
T Consensus       183 dgnqv~tt-~d~tl~~~D~------------------RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD  243 (370)
T KOG1007|consen  183 DGNQVATT-SDSTLQFWDL------------------RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWD  243 (370)
T ss_pred             ccceEEEe-CCCcEEEEEc------------------cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEe
Confidence            67777775 4889999997                  455555555 56778899999999866 578899999999999


Q ss_pred             CCCCCceeeeeeeecCCeeeEEEecC-CcEE-EEEeCCCeEEEEecCCC-cEEEEEEecccccCCCCCccCCCcccccce
Q 016982          233 DVGPSPLAQNVAFRDLPLRDVLFVSE-KMVI-GVGFDCNPMVFAADETG-IWTFIKFLDERKTSSSGPKYGSQFSEAFGK  309 (379)
Q Consensus       233 ~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l-~~~~d~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (379)
                      .++.+..++.+.+|...|+++.|.|. .++| .+|+|..+.++...... .-++....++.......         .-.+
T Consensus       244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d---------seer  314 (370)
T KOG1007|consen  244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED---------SEER  314 (370)
T ss_pred             ccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchh---------hHHh
Confidence            99998888999999999999999994 3444 47888888887654211 00111111110000000         0000


Q ss_pred             eeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          310 LYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                               ...-.+.....+..|.+.|++++|-+.+.    ..||+-|.||+|.|=++..
T Consensus       315 ---------~kpL~dg~l~tydehEDSVY~~aWSsadP----WiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  315 ---------VKPLQDGQLETYDEHEDSVYALAWSSADP----WIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ---------cccccccccccccccccceEEEeeccCCC----eeEEEeccCceEEeecCCh
Confidence                     00000111224578999999999665554    8999999999999977754

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.1e-26  Score=193.62  Aligned_cols=196  Identities=18%  Similarity=0.234  Sum_probs=176.5

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      +.+.+|..+|.++.|+++..+|++|+.+|+|++||++..  +.+++|.+|...+.++.|+|-+.+.++++.|..+++||.
T Consensus        64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~  141 (825)
T KOG0267|consen   64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI  141 (825)
T ss_pred             heeeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence            457899999999999999999999999999999999987  788899999999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      +...+...+  .+|...+..+.|+|+|++++.+++|..++|||...++   +...+ ..|.+.+..+.|+|..-++++|+
T Consensus       142 Rk~Gc~~~~--~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---~~~ef-~~~e~~v~sle~hp~e~Lla~Gs  215 (825)
T KOG0267|consen  142 RKKGCSHTY--KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---LSKEF-KSHEGKVQSLEFHPLEVLLAPGS  215 (825)
T ss_pred             hccCceeee--cCCcceeEEEeecCCCceeeccCCcceeeeecccccc---ccccc-ccccccccccccCchhhhhccCC
Confidence            977655555  6699999999999999999999999999999998887   56666 78999999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN  225 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  225 (379)
                      .|+++++||+                  ++.+.+.........|.+++|+|++..+++|...
T Consensus       216 ~d~tv~f~dl------------------etfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  216 SDRTVRFWDL------------------ETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CCceeeeecc------------------ceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence            9999999997                  5566666666667789999999999998887543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=1.3e-21  Score=164.86  Aligned_cols=239  Identities=11%  Similarity=0.088  Sum_probs=171.4

Q ss_pred             CcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCeEEEEeccCCc
Q 016982           10 AQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRNSYVWNQEGSE   87 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~   87 (379)
                      ...+.+++|+|+++.+ ++++.++.|++||..++  +....+..+.. +..++|+|+++.++++ +.++.+++||+.+.+
T Consensus        30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             CCCCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence            3457789999999876 56677899999999886  45555554443 5678999999877654 568999999999876


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eCC
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAK-TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-STD  165 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d  165 (379)
                      .+..+   .....+.+++|+|++++++++..++ .+.+||.++..   .....  ........++|+|++++|+++ ..+
T Consensus       107 ~~~~~---~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~  178 (300)
T TIGR03866       107 VLAEI---PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE---IVDNV--LVDQRPRFAEFTADGKELWVSSEIG  178 (300)
T ss_pred             EEeEe---eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe---EEEEE--EcCCCccEEEECCCCCEEEEEcCCC
Confidence            54443   2234568899999999999988765 46677876654   22222  123345789999999888554 468


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCC-------cceEEEEECCCCCEEEEE-cCCCeEEEEECCCCC
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-------SWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPS  237 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~  237 (379)
                      +.+++||+                  .+++.+..+..+.       .....++|+|++++++++ +.++.+.+||+.+.+
T Consensus       179 ~~v~i~d~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~  240 (300)
T TIGR03866       179 GTVSVIDV------------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE  240 (300)
T ss_pred             CEEEEEEc------------------CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            99999997                  4444444443211       123568899999986554 456789999998765


Q ss_pred             ceeeeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEecCCC
Q 016982          238 PLAQNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAADETG  279 (379)
Q Consensus       238 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~~~  279 (379)
                       ....+. +...+.+++|+|+|++|+++  .++.+.+|+.....
T Consensus       241 -~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       241 -VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             -EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence             333332 45678999999999988753  47899999988754

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.9e-23  Score=163.11  Aligned_cols=197  Identities=17%  Similarity=0.268  Sum_probs=154.6

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC--CCCEEEEEeCCCeEEEEeccCCceeeeEEeecCC-C
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV--RSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLN-R   99 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~   99 (379)
                      ..+|++..+|.|++||..++  +.+..+.++...++.++|..  ....+.+|+.||+|++||++.......+....++ .
T Consensus        41 ~~vav~lSngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccch--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            56889999999999999987  78889999999999999976  3578999999999999999988766766655555 4


Q ss_pred             ceeEEEECCCCCEEEEEeC----CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEecc
Q 016982          100 AALCVQWSPKENKFAVGSG----AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTF  174 (379)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~  174 (379)
                      +..+++.+-.++.+++|..    +-.|.+||++..+.  ..+.+...|...|+++.|+|.. ++|++|+.||.+.+||+.
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            6677777767888888864    67899999998763  2344447899999999999965 899999999999999983


Q ss_pred             ccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCc
Q 016982          175 IKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG-NTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      ..               .....+...-.+...|..+.|..++ +.+.+-+...+..+|++..+.+
T Consensus       197 ~d---------------~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  197 KD---------------NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             CC---------------cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            11               1111222223446679999999877 3466777888999999987763

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=3e-22  Score=155.66  Aligned_cols=310  Identities=13%  Similarity=0.113  Sum_probs=212.7

Q ss_pred             eccCcceeEEEeCC-----CCcEEEEEecCCeEEEEEecCCc-eEEEEEe--ccCCCceEEEEEcCCC----CEEEEEeC
Q 016982            7 HQFAQCITCHAWSP-----DHAMVAFCPNNNEVHIYKLIQEK-WEKLHVL--QKHDQIVSGIDWSVRS----NRIVTVSH   74 (379)
Q Consensus         7 ~~~~~~i~~~~~s~-----~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~----~~l~~~~~   74 (379)
                      ..|+.+|..++|++     +-..+|+.+. ..+.+|+..... ...++..  ..|......++|+-+.    .++|.++.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            45778999999985     2356777665 589999987652 1223322  2366678888887543    47888889


Q ss_pred             CCeEEEEeccCCceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982           75 DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH  153 (379)
Q Consensus        75 d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  153 (379)
                      -|.|+|.|+.++++...+  .+|...|..+.++|+ .+++++++.|..|++|++++.....+..-+ .+|.+.|.++.|+
T Consensus       114 ~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~-egHrdeVLSvD~~  190 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV-EGHRDEVLSVDFS  190 (385)
T ss_pred             eeEEEEEecchhhhccce--eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc-ccccCcEEEEEEc
Confidence            999999999999876666  789999999999995 578999999999999999998743333333 7899999999999


Q ss_pred             CCCcEEEEeeCCCeEEEEeccccccccccccC----CCccCCccc---ceE---EEeecCCcceEEEEECCCCCEEEEEc
Q 016982          154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE----GTSSDTKFG---EQI---LQLDLSFSWAFGVKWSPSGNTLAYVG  223 (379)
Q Consensus       154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~~~~~~~---~~~---~~~~~~~~~v~~~~~sp~~~~l~~~~  223 (379)
                      +++.++++++.|.++++|++..+++-..-+..    +.....+..   ...   .+-..|...|.++.|-  |.++++-+
T Consensus       191 ~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks  268 (385)
T KOG1034|consen  191 LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS  268 (385)
T ss_pred             CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc
Confidence            99999999999999999998643321111100    000000000   111   1234566677777776  68899988


Q ss_pred             CCCeEEEEECCCCCc-------------eeeeeeeecCCeeeEEEe--cCCcEEE-EEeCCCeEEEEecCCCcEEEEEEe
Q 016982          224 HNSMIYFVDDVGPSP-------------LAQNVAFRDLPLRDVLFV--SEKMVIG-VGFDCNPMVFAADETGIWTFIKFL  287 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~-------------~~~~~~~~~~~i~~~~~s--~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~  287 (379)
                      .++.|..|..-+-++             ....+......|+-+.|+  |-+++|| +...+.+++|+++....-......
T Consensus       269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~  348 (385)
T KOG1034|consen  269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT  348 (385)
T ss_pred             cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE
Confidence            999999997521111             112233334456666554  5567777 567889999998765321110000


Q ss_pred             cccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          288 DERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                                                ..--...|.+.+ |+.|+    .+|+...+|++|.-||
T Consensus       349 ------------------------------------------~s~~~~tVRQ~s-fS~dg----s~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  349 ------------------------------------------HSKSGSTVRQTS-FSRDG----SILVLVCDDGTVWRWD  381 (385)
T ss_pred             ------------------------------------------eccccceeeeee-ecccC----cEEEEEeCCCcEEEEE
Confidence                                                      011234677888 88887    8999999999999998


Q ss_pred             CC
Q 016982          368 LE  369 (379)
Q Consensus       368 ~~  369 (379)
                      ..
T Consensus       382 rv  383 (385)
T KOG1034|consen  382 RV  383 (385)
T ss_pred             ee
Confidence            64

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=6e-24  Score=173.79  Aligned_cols=223  Identities=14%  Similarity=0.181  Sum_probs=182.9

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      .-.|++......++++|+..+.|+|||+...  ...+.+.+|...|+++.++-...+||+++..|.|.|..+.++.....
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~  158 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT  158 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc
Confidence            3345555555589999999999999999965  67778899999999999999999999999999999999998874444


Q ss_pred             EEeecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEE
Q 016982           92 LVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCR  169 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~  169 (379)
                      +. .+....|.-+.|+|..+ +|.+++.+|.|.+||.....+  ..... ..|..+...++|+|.+ .+|++.+.|..|.
T Consensus       159 f~-~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~~~~~-~~HsAP~~gicfspsne~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  159 FT-IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--IFHAS-EAHSAPCRGICFSPSNEALLVSVGYDKKIN  234 (673)
T ss_pred             ee-cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--ccchh-hhccCCcCcceecCCccceEEEecccceEE
Confidence            43 22345677999999765 566788899999999987763  22333 7899999999999976 7888999999999


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCC
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLP  249 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  249 (379)
                      +||+                  ........+.. ..+...++|+++|.+|+.|...|.|..||++..+..+..+..|...
T Consensus       235 ~yD~------------------~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s  295 (673)
T KOG4378|consen  235 IYDI------------------RSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS  295 (673)
T ss_pred             Eeec------------------ccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc
Confidence            9997                  33333333332 5678999999999999999999999999999998888999999999


Q ss_pred             eeeEEEecCC
Q 016982          250 LRDVLFVSEK  259 (379)
Q Consensus       250 i~~~~~s~~~  259 (379)
                      |++++|-+..
T Consensus       296 Vt~vafq~s~  305 (673)
T KOG4378|consen  296 VTRVAFQPSP  305 (673)
T ss_pred             eeEEEeeecc
Confidence            9999998864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.92  E-value=1.9e-23  Score=159.56  Aligned_cols=248  Identities=18%  Similarity=0.275  Sum_probs=187.5

Q ss_pred             ceeccCcceeEEEeCCC-CcEEEEEecC-------CeEEEEEecCCc-------eEEEEEec-cCCCceEEEEEcCCCCE
Q 016982            5 AVHQFAQCITCHAWSPD-HAMVAFCPNN-------NEVHIYKLIQEK-------WEKLHVLQ-KHDQIVSGIDWSVRSNR   68 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~-~~~l~~~~~d-------g~i~i~~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~   68 (379)
                      .+++|.+.|..++-+|. .+.|+++..+       -...||.+....       ++++..+. .+-+.|.|+.|.|++..
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            46778899999999994 4566666441       246799986531       33444444 34568999999999999


Q ss_pred             EEEEeCCCeEEEEeccCCce-eeeEEe---ecCCCceeEEEECC--CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec
Q 016982           69 IVTVSHDRNSYVWNQEGSEW-VPTLVI---LRLNRAALCVQWSP--KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR  142 (379)
Q Consensus        69 l~~~~~d~~i~vw~~~~~~~-~~~~~~---~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  142 (379)
                      |++.. |..|.+|++..... ...+..   ..+....++-+|+|  +++.+++.+ |+++..||+++...   ...+...
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~---~~sI~dA  212 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKK---NNSIEDA  212 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhh---hcchhhh
Confidence            98876 77899999987753 222211   12345677889999  788888766 78999999998763   3334478


Q ss_pred             CCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEE
Q 016982          143 HDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLA  220 (379)
Q Consensus       143 ~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~  220 (379)
                      |...|..+.|+|+. .+|++|+.||.|++||+                 ..+..++.++.+|..+|+++.|+|. .++++
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~-----------------R~tk~pv~el~~HsHWvW~VRfn~~hdqLiL  275 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDT-----------------RKTKFPVQELPGHSHWVWAVRFNPEHDQLIL  275 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEec-----------------cCCCccccccCCCceEEEEEEecCccceEEE
Confidence            99999999999986 57889999999999998                 4778889999999999999999994 66788


Q ss_pred             EEcCCCeEEEEECCCC------------------------C----ceeeeeeeecCCeeeEEEecCCcEEE--EEeCCCe
Q 016982          221 YVGHNSMIYFVDDVGP------------------------S----PLAQNVAFRDLPLRDVLFVSEKMVIG--VGFDCNP  270 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~------------------------~----~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~  270 (379)
                      +++.|..|.+|....-                        +    ..+.++..|...|++++||.-..++.  -++||.+
T Consensus       276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceE
Confidence            9999999999954221                        0    02345667889999999999777665  5688888


Q ss_pred             EEEE
Q 016982          271 MVFA  274 (379)
Q Consensus       271 ~i~~  274 (379)
                      .|=.
T Consensus       356 iIs~  359 (370)
T KOG1007|consen  356 IISS  359 (370)
T ss_pred             Eeec
Confidence            7643

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=1.7e-23  Score=165.34  Aligned_cols=221  Identities=15%  Similarity=0.246  Sum_probs=166.0

Q ss_pred             cceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEE-EEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEE
Q 016982            4 IAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEK-LHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYV   80 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v   80 (379)
                      .++.+|...=++++||| ....|++|.--+.|++|...++.|.. ...+.+|...|-.++|||.. ..|++|+.||+|+|
T Consensus       205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrI  284 (440)
T KOG0302|consen  205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRI  284 (440)
T ss_pred             EEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEE
Confidence            45667888889999999 23457788777899999999887654 34567799999999999976 68899999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFL  159 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l  159 (379)
                      ||++.+.....+....|.+.|+.++|+.+-.+||+|+.||+++|||++.-+.......+ ..|..+|+++.|+|.. ..|
T Consensus       285 WDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s~i  363 (440)
T KOG0302|consen  285 WDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDSVI  363 (440)
T ss_pred             EEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCceE
Confidence            99999865666666889999999999998889999999999999999987644345566 8899999999999964 778


Q ss_pred             EEeeCCCeEEEEeccccccccc--cccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCCe
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIK--EKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSM  227 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~  227 (379)
                      ++++.|.+|.+||+....-+-.  ........+ -..+.+...++ ...+..+.|++. -.+|++.+.||.
T Consensus       364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~d-lPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQD-LPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             EeccCCCcEEEEEeeccCChhhhccccccchhc-CCceeEEEecc-hhHhhhheeccCCCCeEEEecccce
Confidence            8889999999999864221100  000000000 00112222122 456888999994 456777777774

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.1e-24  Score=194.75  Aligned_cols=251  Identities=17%  Similarity=0.228  Sum_probs=198.7

Q ss_pred             cCcceeEEEeCCCCcE----EEEEecCCeEEEEEecC----CceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEE
Q 016982            9 FAQCITCHAWSPDHAM----VAFCPNNNEVHIYKLIQ----EKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSY   79 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~----l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~   79 (379)
                      ....-+.++|.+.|..    ||.|..||.|.+||...    .....+.+...|.+.|..+.|++.. +.|++|+.||.|.
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            3567788999987765    88899999999999864    2345667788899999999999976 5999999999999


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-c
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-V  157 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~  157 (379)
                      |||+...+.............|.+++|+. ....|++++.+|...|||++..+.  +.+.-.......+..++|+|+. .
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~~~~~~S~l~WhP~~aT  220 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTPGRMHCSVLAWHPDHAT  220 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc--ccccccCCCccceeeeeeCCCCce
Confidence            99998865322222233567899999997 456788999999999999998863  2332212233568899999987 6


Q ss_pred             EEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC-CEEEEEcCCCeEEEEEC
Q 016982          158 FLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG-NTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       158 ~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~v~d~  233 (379)
                      .+++++.|.   .|.+||+                 +....+++.+++|...|.++.|++.+ .+|++++.|+.|.+|+.
T Consensus       221 ql~~As~dd~~PviqlWDl-----------------R~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~  283 (1049)
T KOG0307|consen  221 QLLVASGDDSAPVIQLWDL-----------------RFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP  283 (1049)
T ss_pred             eeeeecCCCCCceeEeecc-----------------cccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecC
Confidence            666666543   5999997                 35567788889999999999999955 88999999999999999


Q ss_pred             CCCCceeeeeeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecCCC
Q 016982          234 VGPSPLAQNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~~~  279 (379)
                      ++++ .+..+...+..+..+.|+|... +++ ++.||.|-|+...+..
T Consensus       284 ~tgE-vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  284 NTGE-VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCce-EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9876 4577776778899999999765 555 7899999999977644

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=161.00  Aligned_cols=243  Identities=14%  Similarity=0.188  Sum_probs=187.5

Q ss_pred             CcceeEEEeC-------CCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc---eEEEEEcCCCCEEEEEeCCCeEE
Q 016982           10 AQCITCHAWS-------PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI---VSGIDWSVRSNRIVTVSHDRNSY   79 (379)
Q Consensus        10 ~~~i~~~~~s-------~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~   79 (379)
                      ...|+..+|-       |+..++|+.+++.-|++||.-+++.+.......|...   ..+++|+|||.+|+.|. ...|+
T Consensus       104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcir  182 (406)
T KOG2919|consen  104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIR  182 (406)
T ss_pred             CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEE
Confidence            5677777774       6778999999999999999999865554444445443   46899999999998764 57899


Q ss_pred             EEec-cCCceeeeEEeecC-----CCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982           80 VWNQ-EGSEWVPTLVILRL-----NRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        80 vw~~-~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                      ++|+ +.+...+......+     .+-+.+++|+| +.+.+++++....+-||.-....   ....+ .+|.+.|+.++|
T Consensus       183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---pl~ll-ggh~gGvThL~~  258 (406)
T KOG2919|consen  183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---PLQLL-GGHGGGVTHLQW  258 (406)
T ss_pred             EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC---ceeee-cccCCCeeeEEe
Confidence            9999 44443333322223     57789999999 56699999998899998877766   35566 799999999999


Q ss_pred             cCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc-ce--EEEEECCCCCEEEEEcCCCeE
Q 016982          153 HPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS-WA--FGVKWSPSGNTLAYVGHNSMI  228 (379)
Q Consensus       153 ~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v--~~~~~sp~~~~l~~~~~d~~i  228 (379)
                      .++|+.|.+|.. +..|..||+                 .....++..+..|.. .-  .-....|++++|++|+.||.|
T Consensus       259 ~edGn~lfsGaRk~dkIl~WDi-----------------R~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V  321 (406)
T KOG2919|consen  259 CEDGNKLFSGARKDDKILCWDI-----------------RYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSV  321 (406)
T ss_pred             ccCcCeecccccCCCeEEEEee-----------------hhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccE
Confidence            999999999986 778999998                 356667777766644 22  234567899999999999999


Q ss_pred             EEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEE
Q 016982          229 YFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFA  274 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~  274 (379)
                      ++||+.+....+..+..+...++.++++|--.++|+++...+.-+.
T Consensus       322 ~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~  367 (406)
T KOG2919|consen  322 RVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYP  367 (406)
T ss_pred             EEEecCCCCCcccccccccccccceecCcccceeeeccCceeecCC
Confidence            9999998554456667788889999999998888877766554333

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.9e-23  Score=167.42  Aligned_cols=242  Identities=17%  Similarity=0.208  Sum_probs=183.6

Q ss_pred             cceeEEEeCC-------CCcEEEEEecCCeEEEEEecCCc-eEE------------------EEEeccCCCceEEEEEcC
Q 016982           11 QCITCHAWSP-------DHAMVAFCPNNNEVHIYKLIQEK-WEK------------------LHVLQKHDQIVSGIDWSV   64 (379)
Q Consensus        11 ~~i~~~~~s~-------~~~~l~~~~~dg~i~i~~~~~~~-~~~------------------~~~~~~~~~~v~~~~~~~   64 (379)
                      ....|++|-.       .|+++|.|+.|..|.|||+.-.. ..+                  -..-.+|+..|.+++|+.
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~  253 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR  253 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc
Confidence            4456777743       35899999999999999985210 011                  112346888999999987


Q ss_pred             CC-CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec
Q 016982           65 RS-NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR  142 (379)
Q Consensus        65 ~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  142 (379)
                      .- +.|++|+.|.+|++||+.++++...+  ..|...|.++.|+| ....|++|+.|++|.+.|.+....  ....  -.
T Consensus       254 ~~~nVLaSgsaD~TV~lWD~~~g~p~~s~--~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~~~--wk  327 (463)
T KOG0270|consen  254 NFRNVLASGSADKTVKLWDVDTGKPKSSI--THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--SGKE--WK  327 (463)
T ss_pred             ccceeEEecCCCceEEEEEcCCCCcceeh--hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc--cCce--EE
Confidence            64 68899999999999999999976666  56889999999999 577999999999999999986432  1222  34


Q ss_pred             CCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEE
Q 016982          143 HDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLA  220 (379)
Q Consensus       143 ~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~  220 (379)
                      ..+.|..++|.|.. ..+++++.||+++-+|+                 +..++++.++..|.++|.++++++. -.+|+
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~-----------------R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~  390 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDI-----------------RNPGKPVWTLKAHDDEISGLSVNIQTPGLLS  390 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeec-----------------CCCCCceeEEEeccCCcceEEecCCCCccee
Confidence            56789999999976 67788889999999998                 3667999999999999999999985 45788


Q ss_pred             EEcCCCeEEEEECCCCCceeeeeeee---cCCeeeEEEecCCc-EEE-EEeCCCeEEEEecC
Q 016982          221 YVGHNSMIYFVDDVGPSPLAQNVAFR---DLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~  277 (379)
                      +++.|+.|++|++....+.  ....|   -+...+.++.|+-. +++ +|..+.+++|+...
T Consensus       391 t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  391 TASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             eccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence            9999999999998665431  11222   23356667777543 444 55666688887543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.92  E-value=1.5e-23  Score=162.89  Aligned_cols=259  Identities=14%  Similarity=0.173  Sum_probs=190.4

Q ss_pred             ccCcceeEEEeCCC----CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982            8 QFAQCITCHAWSPD----HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN   82 (379)
Q Consensus         8 ~~~~~i~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~   82 (379)
                      .|....+.++|+-+    ..++|+|+.-|.|+|.|+.++  +....+.+|...|+.+.+.|+. +++++++.|..|++|+
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN  164 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence            36677788888653    357888999999999999987  7888899999999999999987 7899999999999999


Q ss_pred             ccCCceeeeEE-eecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee---EE----------------EEE---
Q 016982           83 QEGSEWVPTLV-ILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW---VS----------------KLI---  139 (379)
Q Consensus        83 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~---~~----------------~~~---  139 (379)
                      +++..++..+- ..+|...|.++.|+++|.+|++++.|.++++|+++..+-..   ..                ..+   
T Consensus       165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f  244 (385)
T KOG1034|consen  165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF  244 (385)
T ss_pred             ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence            99998877663 34689999999999999999999999999999998432100   00                000   


Q ss_pred             --eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEE--EECCC
Q 016982          140 --RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGV--KWSPS  215 (379)
Q Consensus       140 --~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~  215 (379)
                        ..-|...|.|+.|-  |+++++-+-++.|..|....-+....+-.++    ......+.++......|+-+  +|+|-
T Consensus       245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~----es~~Ti~~~~~~~~c~iWfirf~~d~~  318 (385)
T KOG1034|consen  245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPP----ESATTILGEFDYPMCDIWFIRFAFDPW  318 (385)
T ss_pred             cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCC----ccceeeeeEeccCccceEEEEEeecHH
Confidence              13466677777774  6789988889999999762000000000000    11223445555555555554  55677


Q ss_pred             CCEEEEEcCCCeEEEEECCCCCcee-eeeee--ecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPSPLA-QNVAF--RDLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      ++.||.|...|.+.+||++...+.. .++..  ....|...+|+.||.+|+ .+.|+.+.-|+
T Consensus       319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            8999999999999999998876532 22222  245699999999999877 67777776554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=8.9e-23  Score=172.97  Aligned_cols=272  Identities=20%  Similarity=0.295  Sum_probs=205.6

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      .|..++|-|||..|+.+. +..+.+||...+  ..+.++++|.+.|++++|+.||+.+++|+.|+.|.+|+-.-..   .
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---I   87 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---e
Confidence            899999999999888774 458999999988  7899999999999999999999999999999999999865433   3


Q ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982           92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF  171 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~  171 (379)
                      +. ..|...|.|+.|+|-...+++++-. ..-+|..+...   +.+   ......+.+++|..||++|+.|-.+|+|.+-
T Consensus        88 Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~---V~K---~kss~R~~~CsWtnDGqylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   88 LK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS---VSK---HKSSSRIICCSWTNDGQYLALGMFNGTISIR  159 (1081)
T ss_pred             ee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh---HHh---hhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence            33 5689999999999999999998753 34567665543   111   2234578899999999999999999999988


Q ss_pred             eccccccccccccCCCccCCcccceEEEee---cCCcceEEEEECCCC-----CEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQLD---LSFSWAFGVKWSPSG-----NTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~-----~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      +                   ..++....++   +.+.+|++++|+|..     ..+++.....++.+|.+.... + ..-
T Consensus       160 N-------------------k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-I-gk~  218 (1081)
T KOG1538|consen  160 N-------------------KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-I-GKD  218 (1081)
T ss_pred             c-------------------CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-e-ccc
Confidence            6                   3444444443   467789999999953     357777777888888765421 1 111


Q ss_pred             eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccc
Q 016982          244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDA  322 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (379)
                      ..-+-...++.+.++|.++. +|+|+.+.+|..++-   .+ ..                                    
T Consensus       219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv---rL-GT------------------------------------  258 (1081)
T KOG1538|consen  219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV---RL-GT------------------------------------  258 (1081)
T ss_pred             ccCCCCchhheeccCCcEEEEccCCCceEEEeecCe---EE-ee------------------------------------
Confidence            12234456889999999876 888999998875542   11 10                                    


Q ss_pred             cccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          323 VESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       323 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                             +......|+.|.+.     |++++++.|..||+|--|++-.
T Consensus       259 -------vg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  259 -------VGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             -------ccccceeEEEEEEc-----cCCceEEEEEccCeeehhhhHH
Confidence                   01234568888844     4559999999999999998753

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=1.5e-22  Score=170.40  Aligned_cols=257  Identities=9%  Similarity=0.085  Sum_probs=187.7

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEecc
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~   84 (379)
                      ...|...|..+.|-|-...|++++.|.++++||+++++..-...+.+|...|.+++|.|.. ..|++|+.||.|.|||+.
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            3458999999999996678899999999999999998555555689999999999999977 578999999999999975


Q ss_pred             CCce--------------------ee-----eEEeecCCCceeE---EEECCCCCEEEEEeC-CCeEEEEEeecCCceeE
Q 016982           85 GSEW--------------------VP-----TLVILRLNRAALC---VQWSPKENKFAVGSG-AKTVCICYYEQENNWWV  135 (379)
Q Consensus        85 ~~~~--------------------~~-----~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~  135 (379)
                      -...                    ..     .-....+...+.+   +.+..|...||+++. |+.|+|||++.......
T Consensus       176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r  255 (720)
T KOG0321|consen  176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR  255 (720)
T ss_pred             ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence            3210                    00     0001122333444   555668888998888 99999999987653111


Q ss_pred             EEEEe----ecC---CcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc--c
Q 016982          136 SKLIR----KRH---DSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--W  206 (379)
Q Consensus       136 ~~~~~----~~~---~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  206 (379)
                      .....    ..|   ...+.++.....|.+|.+.+.|+.|+.|++...                ...++..+.++..  -
T Consensus       256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~----------------s~sP~~~~sg~~~~sf  319 (720)
T KOG0321|consen  256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL----------------SISPVAEFSGKLNSSF  319 (720)
T ss_pred             cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc----------------CcCchhhccCccccee
Confidence            11110    122   235677777777888888888999999997311                1122222322211  1


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec--CCcEEEEEeCCCeEEEEecCC
Q 016982          207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS--EKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      -..-..+|++.+|++|+.|...++|.+.+.......+.+|...|+.++|.|  ....++++.|..+++|.+.+.
T Consensus       320 ~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  320 YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            122346899999999999999999999998877778889999999999988  567888999999999998543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-22  Score=166.42  Aligned_cols=262  Identities=17%  Similarity=0.275  Sum_probs=192.2

Q ss_pred             CCeEEEEEecCCceEEEEEeccC--CCceEEEEEcCCCCEEEEE--eCCCeEEEEeccCCc-eeeeEEeecCCCceeEEE
Q 016982           31 NNEVHIYKLIQEKWEKLHVLQKH--DQIVSGIDWSVRSNRIVTV--SHDRNSYVWNQEGSE-WVPTLVILRLNRAALCVQ  105 (379)
Q Consensus        31 dg~i~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~--~~d~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~  105 (379)
                      ...++|||...-+  ....+..|  ...+.++.|+.... |+++  +.|..+++|.-.... .++.... .....-.|++
T Consensus        11 gd~~kl~D~s~~~--~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~   86 (673)
T KOG4378|consen   11 GDKTKLSDFSDLE--TKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVA   86 (673)
T ss_pred             CCceEEeeccccc--CccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeec-cccchHHHHh
Confidence            3489999997642  22222222  23488999987653 4444  567889999755441 1222221 1223445555


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccC
Q 016982          106 WSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       106 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  185 (379)
                      ......++++|+..+.|+|||++...   +.+.+ ..|...|+++.++-.+.+||+++..|.|.|..+            
T Consensus        87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl---~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~------------  150 (673)
T KOG4378|consen   87 CASQSLYEISGGQSGCVKIWDLRAKL---IHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT------------  150 (673)
T ss_pred             hhhcceeeeccCcCceeeehhhHHHH---Hhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEec------------
Confidence            55566899999999999999999654   45556 899999999999999999999999999999986            


Q ss_pred             CCccCCcccceEEEeecC-CcceEEEEECCCCCE-EEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EE
Q 016982          186 GTSSDTKFGEQILQLDLS-FSWAFGVKWSPSGNT-LAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VI  262 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l  262 (379)
                            .++.....|... ...|.-+.|+|..+. |.+++.+|.|.+||+....+.......|..|...++|+|... +|
T Consensus       151 ------~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  151 ------KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             ------ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence                  455555555443 345678999997665 567889999999999988877777788999999999999765 44


Q ss_pred             E-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeee
Q 016982          263 G-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIV  341 (379)
Q Consensus       263 ~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  341 (379)
                      + .|.|..|.+|+......-+.+                                               .-..+...|+
T Consensus       225 vsVG~Dkki~~yD~~s~~s~~~l-----------------------------------------------~y~~Plstva  257 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRSQASTDRL-----------------------------------------------TYSHPLSTVA  257 (673)
T ss_pred             EEecccceEEEeeccccccccee-----------------------------------------------eecCCcceee
Confidence            4 789999999986643211111                                               1234677888


Q ss_pred             eecccCCcccceEEEeecCceEEEEeCCC
Q 016982          342 PLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       342 ~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                       |.++|    .+|+.|...|.|..||++.
T Consensus       258 -f~~~G----~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  258 -FSECG----TYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             -ecCCc----eEEEeecCCceEEEEeccc
Confidence             88776    9999999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=1.4e-22  Score=170.79  Aligned_cols=165  Identities=17%  Similarity=0.217  Sum_probs=119.9

Q ss_pred             cceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEE----EEeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982            4 IAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKL----HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNS   78 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (379)
                      ..+..|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-.+.+    ..+.+..-.|.++.|+|...-|+..+..|.+
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v  152 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSV  152 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceE
Confidence            34688999999999999 557899999999999999985421221    2233334578899999987656555667999


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC-EEEEEEcCCCc
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS-VTSVAWHPNNV  157 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~  157 (379)
                      ++||+.+++.  .+...+|...|.+..|+.||.++++.+.|+.|+|||.+....  ..+.. .+|.+. -..+.|.-+-.
T Consensus       153 ~i~D~stqk~--~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~--piQ~t-e~H~~~rdsRv~w~Gn~~  227 (1012)
T KOG1445|consen  153 YITDISTQKT--AVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASME--PIQTT-EGHGGMRDSRVLWAGNWE  227 (1012)
T ss_pred             EEEEcccCce--eecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCC--ccccc-cccccchhheeeeccchh
Confidence            9999999884  445578999999999999999999999999999999887643  23333 555432 23455544333


Q ss_pred             EEEEeeC----CCeEEEEec
Q 016982          158 FLATTST----DGKCRVFST  173 (379)
Q Consensus       158 ~l~~~~~----d~~i~v~d~  173 (379)
                      .|++.+.    -..|++||.
T Consensus       228 rlisTGF~~~R~reV~~~Dt  247 (1012)
T KOG1445|consen  228 RLISTGFTTKRIREVRAYDT  247 (1012)
T ss_pred             hhhhcccchhhheeeeeeec
Confidence            4544433    245666763

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.90  E-value=7.4e-22  Score=151.07  Aligned_cols=243  Identities=15%  Similarity=0.232  Sum_probs=183.2

Q ss_pred             eccCcceeEEEeCCCC-----cEEEEEecCCeEEEEEecC--CceEEEEEec-----cCCCceEEEEEcCC-CCEEEEEe
Q 016982            7 HQFAQCITCHAWSPDH-----AMVAFCPNNNEVHIYKLIQ--EKWEKLHVLQ-----KHDQIVSGIDWSVR-SNRIVTVS   73 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~-----~~~~~v~~~~~~~~-~~~l~~~~   73 (379)
                      +.|.-+++.+.|.|+.     .+||+.+  ..+++|.+..  .+.++...+.     .+..++++..|+.- -++|.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            6788999999999976     3567654  3899999974  3333333332     35568999999864 47899999


Q ss_pred             CCCeEEEEeccCCce-eeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCEEE
Q 016982           74 HDRNSYVWNQEGSEW-VPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSVTS  149 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~  149 (379)
                      -|-+..|||++++.. .....+..|..+|..++|...+ +.+|+.+.||.+++||++..+.   ...+.  .....+...
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~~~~pLlR  247 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPSPSTPLLR  247 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---ceEEecCCCCCCccee
Confidence            999999999998732 1122346899999999999854 5789999999999999998763   22221  222567889


Q ss_pred             EEEcCCC-cEEEEeeCC-CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCC
Q 016982          150 VAWHPNN-VFLATTSTD-GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNS  226 (379)
Q Consensus       150 ~~~~p~~-~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~  226 (379)
                      ++|+++. +++|+-..| ..|.|.|+                 .....++..++.|.+.|+.++|.| ....+++++.|.
T Consensus       248 LswnkqDpnymATf~~dS~~V~iLDi-----------------R~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~  310 (364)
T KOG0290|consen  248 LSWNKQDPNYMATFAMDSNKVVILDI-----------------RVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC  310 (364)
T ss_pred             eccCcCCchHHhhhhcCCceEEEEEe-----------------cCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence            9999865 777776554 56889988                 355678899999999999999999 467899999999


Q ss_pred             eEEEEECCCCCc-----eeeeeeeecCCeeeEEEec-CCcEEEEEeCCCeEE
Q 016982          227 MIYFVDDVGPSP-----LAQNVAFRDLPLRDVLFVS-EKMVIGVGFDCNPMV  272 (379)
Q Consensus       227 ~i~v~d~~~~~~-----~~~~~~~~~~~i~~~~~s~-~~~~l~~~~d~~~~i  272 (379)
                      .+.+||+.+...     .+... ..++.|+.+.|++ .+..++.++++.+.+
T Consensus       311 qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~kklei  361 (364)
T KOG0290|consen  311 QALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGKKLEI  361 (364)
T ss_pred             eEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecCeeeE
Confidence            999999876532     11111 2467899999997 577898887776554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=2.4e-21  Score=154.81  Aligned_cols=254  Identities=20%  Similarity=0.268  Sum_probs=183.9

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEec--------------CCceEEEEEeccCCCceEEEEEcCCCCEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLI--------------QEKWEKLHVLQKHDQIVSGIDWSVRSNRI   69 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   69 (379)
                      ..|.+|...|+++.|+|+|.+||+|+.+|.|.+|...              ...+.....+.+|...|..++|+|+++++
T Consensus        59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence            4577899999999999999999999999999999877              22367778899999999999999999999


Q ss_pred             EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE--EE--------
Q 016982           70 VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK--LI--------  139 (379)
Q Consensus        70 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~~--------  139 (379)
                      ++++.|..+++||+..++....+  ..|...+..++|.|-++++++-+.|...+.+.+..........  .+        
T Consensus       139 ~s~s~dns~~l~Dv~~G~l~~~~--~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  216 (434)
T KOG1009|consen  139 VSGSVDNSVRLWDVHAGQLLAIL--DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER  216 (434)
T ss_pred             eeeeccceEEEEEeccceeEeec--cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence            99999999999999999866655  6799999999999999999999988877776665543211111  00        


Q ss_pred             -----eecC----CcCEEEEEEcCCCcEEEEeeC----CCe-----EEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          140 -----RKRH----DSSVTSVAWHPNNVFLATTST----DGK-----CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       140 -----~~~~----~~~v~~~~~~p~~~~l~~~~~----d~~-----i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                           +.-|    ..-...++|+|+|.+|++...    .+.     .++|+-                 ....++...+.
T Consensus       217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr-----------------k~l~rP~~~lp  279 (434)
T KOG1009|consen  217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR-----------------KDLKRPAARLP  279 (434)
T ss_pred             CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc-----------------ccccCceeecC
Confidence                 0011    123456789999999887542    222     233321                 01123333333


Q ss_pred             cCCcceEEEEECC------------------CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982          202 LSFSWAFGVKWSP------------------SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       202 ~~~~~v~~~~~sp------------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                      ....+...+.|+|                  -+-.++.+ ..+.|++||.++..++...-..|-..|+.++|++||.+|+
T Consensus       280 ~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~  358 (434)
T KOG1009|consen  280 SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLL  358 (434)
T ss_pred             CCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEE
Confidence            3333333344433                  22334444 4678999999988777666667889999999999999887


Q ss_pred             -EEeCCCeEEEEecC
Q 016982          264 -VGFDCNPMVFAADE  277 (379)
Q Consensus       264 -~~~d~~~~i~~~~~  277 (379)
                       ++.||-..+..+..
T Consensus       359 vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  359 VSSTDGFCSLVTFEP  373 (434)
T ss_pred             EeccCCceEEEEEcc
Confidence             77788666655543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.90  E-value=7.2e-22  Score=160.03  Aligned_cols=211  Identities=12%  Similarity=0.077  Sum_probs=161.3

Q ss_pred             EEEEEeccCCCceEEEEEcCCC--CEEEEEeCCCeEEEEeccCC--ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCC
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRS--NRIVTVSHDRNSYVWNQEGS--EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGA  119 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  119 (379)
                      .......-+..+|++++|+|..  +.+++|+..|+|-+||+.+.  .....+....|.++|.++.|+| +...+++.+.|
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence            3445556688999999999976  47788889999999999532  2233445577999999999999 55789999999


Q ss_pred             CeEEEEEeecCCceeEEEEEee--cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE
Q 016982          120 KTVCICYYEQENNWWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI  197 (379)
Q Consensus       120 ~~v~i~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
                      |+|++-|++....    +.+..  .-...+..+.|+.+...++.+..=|...+||++                 ..+...
T Consensus       257 GtiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R-----------------~~~s~~  315 (498)
T KOG4328|consen  257 GTIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLR-----------------TDGSEY  315 (498)
T ss_pred             ceeeeeeecchhh----HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEee-----------------cCCccc
Confidence            9999999987752    22212  234567788888888888888887899999972                 223335


Q ss_pred             EEeecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCce---eeeeeeecCCeeeEEEecC-CcEEEEEeCCCeEE
Q 016982          198 LQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPL---AQNVAFRDLPLRDVLFVSE-KMVIGVGFDCNPMV  272 (379)
Q Consensus       198 ~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~i~~~~~s~~-~~~l~~~~d~~~~i  272 (379)
                      ..+..|...|.+++++|. -.+|++++.|++++|||++.-...   .-....|...|.+..|||+ |.++.++.|+.|+|
T Consensus       316 ~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv  395 (498)
T KOG4328|consen  316 ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV  395 (498)
T ss_pred             hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence            556677889999999994 567899999999999998764211   1233358889999999996 56666899999999


Q ss_pred             EEec
Q 016982          273 FAAD  276 (379)
Q Consensus       273 ~~~~  276 (379)
                      |+..
T Consensus       396 ~dss  399 (498)
T KOG4328|consen  396 FDSS  399 (498)
T ss_pred             eecc
Confidence            9864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=3.9e-23  Score=184.99  Aligned_cols=288  Identities=14%  Similarity=0.191  Sum_probs=206.5

Q ss_pred             eEEEeCCCCc-EEEEEe----------cCCeEEEEEecCC--c--eEEEEEeccCCCceEEEEEcCCCCE----EEEEeC
Q 016982           14 TCHAWSPDHA-MVAFCP----------NNNEVHIYKLIQE--K--WEKLHVLQKHDQIVSGIDWSVRSNR----IVTVSH   74 (379)
Q Consensus        14 ~~~~~s~~~~-~l~~~~----------~dg~i~i~~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~   74 (379)
                      -.++|+|++. ++|+|.          .+.++-||.+...  .  .+.+..+. -....+.++|.+.+..    |+.|..
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e   88 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE   88 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence            3478999886 556552          2455666666432  1  12333333 2457889999988755    888899


Q ss_pred             CCeEEEEeccCC----ceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE
Q 016982           75 DRNSYVWNQEGS----EWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS  149 (379)
Q Consensus        75 d~~i~vw~~~~~----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~  149 (379)
                      ||.|.+||...-    +.........|.+.|..+.|++. +++||+|+.||.|.|||++..+..  ...-.....+.|.+
T Consensus        89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~  166 (1049)
T KOG0307|consen   89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGSQAPPSEIKC  166 (1049)
T ss_pred             CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC--CCCCCCCCcccceE
Confidence            999999997652    21122233569999999999995 559999999999999999875421  11101235678999


Q ss_pred             EEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc--ceEEEEECCCC-CEEEEEcCC
Q 016982          150 VAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSG-NTLAYVGHN  225 (379)
Q Consensus       150 ~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~-~~l~~~~~d  225 (379)
                      ++|+..- ..|++++.+|.+.|||+                  +..+++..+..+..  .+..++|+|+. ..|++++.|
T Consensus       167 lsWNrkvqhILAS~s~sg~~~iWDl------------------r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~d  228 (1049)
T KOG0307|consen  167 LSWNRKVSHILASGSPSGRAVIWDL------------------RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGD  228 (1049)
T ss_pred             eccchhhhHHhhccCCCCCceeccc------------------cCCCcccccccCCCccceeeeeeCCCCceeeeeecCC
Confidence            9998754 67889999999999998                  44455655544433  47789999975 456666654


Q ss_pred             C---eEEEEECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccC
Q 016982          226 S---MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG  300 (379)
Q Consensus       226 ~---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (379)
                      .   .|.+||++......+.+++|...|.++.|++.+ ++|+ ++.|+.+.+|+.+...   ++.               
T Consensus       229 d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---vl~---------------  290 (1049)
T KOG0307|consen  229 DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---VLG---------------  290 (1049)
T ss_pred             CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce---Eee---------------
Confidence            3   699999998777778889999999999999965 5555 8899999999977642   221               


Q ss_pred             CCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982          301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                                                  .+....+.+..+.|.+.+.    .+|+.++-||.|-|+.+....
T Consensus       291 ----------------------------~~p~~~nW~fdv~w~pr~P----~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  291 ----------------------------ELPAQGNWCFDVQWCPRNP----SVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ----------------------------ecCCCCcceeeeeecCCCc----chhhhheeccceeeeeeecCC
Confidence                                        1123456778888544332    699999999999999997643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=9.8e-21  Score=146.61  Aligned_cols=258  Identities=12%  Similarity=0.073  Sum_probs=175.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE
Q 016982           57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS  136 (379)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  136 (379)
                      ..|+.|++.|.+||+|..||.|.+||+.+....+.+  .+|..+|++++|+++|++|++++.|..+.+||+..+.   +.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l--saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs---~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML--SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS---PL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh--hccccceeEEEecCCCCEeeeecCCceeEEEeccCCC---ce
Confidence            689999999999999999999999999998755554  6799999999999999999999999999999999988   34


Q ss_pred             EEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-c-CCcceEEEEEC
Q 016982          137 KLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-L-SFSWAFGVKWS  213 (379)
Q Consensus       137 ~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s  213 (379)
                      +.+  ....+|..+.|+|.. +..++.-.+..-.+-++.                .+...++..-. + -+....+..|.
T Consensus       101 ~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s----------------~~~h~~Lp~d~d~dln~sas~~~fd  162 (405)
T KOG1273|consen  101 KRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS----------------DPKHSVLPKDDDGDLNSSASHGVFD  162 (405)
T ss_pred             eEE--EccCccceeeeccccCCeEEEEEecCCcEEEEec----------------CCceeeccCCCcccccccccccccc
Confidence            444  467899999999965 333333333334444431                00001100000 0 01112334689


Q ss_pred             CCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec-CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982          214 PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD-LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERK  291 (379)
Q Consensus       214 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~  291 (379)
                      +.|+++++|...|.+.++|..+.+ ++..++... ..|.++.|+..|++++ -+.|..|+.|+..+--        +...
T Consensus       163 r~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~--------~~~r  233 (405)
T KOG1273|consen  163 RRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDID--------DEGR  233 (405)
T ss_pred             CCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhc--------ccCc
Confidence            999999999999999999988764 555555444 6789999999999887 5678888888754210        0000


Q ss_pred             cCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee-cCceEEEEeCCC
Q 016982          292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTWDLES  370 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~v~iW~~~~  370 (379)
                      ....         ....++.  +              +  -....=.+++ |+.+|    .|++.++ .-..++||.-..
T Consensus       234 ~~e~---------e~~~K~q--D--------------v--VNk~~Wk~cc-fs~dg----eYv~a~s~~aHaLYIWE~~~  281 (405)
T KOG1273|consen  234 DGEV---------EPEHKLQ--D--------------V--VNKLQWKKCC-FSGDG----EYVCAGSARAHALYIWEKSI  281 (405)
T ss_pred             cCCc---------ChhHHHH--H--------------H--Hhhhhhhhee-ecCCc----cEEEeccccceeEEEEecCC
Confidence            0000         0000110  0              0  0011123455 77776    6777665 457899999999


Q ss_pred             ccccccCC
Q 016982          371 QEDLLNYH  378 (379)
Q Consensus       371 ~~~~~~~~  378 (379)
                      |+.++.|+
T Consensus       282 GsLVKILh  289 (405)
T KOG1273|consen  282 GSLVKILH  289 (405)
T ss_pred             cceeeeec
Confidence            99988765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2.5e-21  Score=162.04  Aligned_cols=249  Identities=17%  Similarity=0.193  Sum_probs=181.7

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC--EEEEEeCCCeE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN--KFAVGSGAKTV  122 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v  122 (379)
                      .+...+.+|.+.|.++...|.|..|++|+.||+|+||.+.++.++..+.+   .+.|.+++|+|.+.  .||++-.+ .+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---d~~I~~vaw~P~~~~~vLAvA~~~-~~  466 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---DSEIRSVAWNPLSDLCVLAVAVGE-CV  466 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee---cceeEEEEecCCCCceeEEEEecC-ce
Confidence            34556789999999999999999999999999999999999998888765   56899999999654  44444433 34


Q ss_pred             EEEEeecCC---------------------------------ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---CC
Q 016982          123 CICYYEQEN---------------------------------NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---DG  166 (379)
Q Consensus       123 ~i~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~  166 (379)
                      .|.+..-+.                                 .....-.+...|...|..+.|+..|.||++..-   ..
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence            443321110                                 000000111467889999999999999998765   34


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR  246 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  246 (379)
                      .|.|+++                  ........|.-..+.|.++.|+|...+|++++ ...|+|||+.... +++.+...
T Consensus       547 ~VliHQL------------------SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe-lvKkL~tg  606 (733)
T KOG0650|consen  547 SVLIHQL------------------SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE-LVKKLLTG  606 (733)
T ss_pred             eEEEEec------------------ccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH-HHHHHhcC
Confidence            6888886                  22222233444466799999999999888875 5689999998743 45555555


Q ss_pred             cCCeeeEEEecCCc-EEEEEeCCCeEEEEecCC-CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccc
Q 016982          247 DLPLRDVLFVSEKM-VIGVGFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVE  324 (379)
Q Consensus       247 ~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (379)
                      ...|.+++.+|.|. +|+++.|+.+..|+++-. +.|+                                          
T Consensus       607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk------------------------------------------  644 (733)
T KOG0650|consen  607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYK------------------------------------------  644 (733)
T ss_pred             CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhH------------------------------------------
Confidence            66799999999875 566888888888776532 1122                                          


Q ss_pred             cccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          325 SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       325 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                          .+.-|...|++|+++     +...+|+||+.||.+.|+--
T Consensus       645 ----~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  645 ----TLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             ----Hhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEee
Confidence                335699999999965     44589999999999998743

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5.5e-20  Score=160.73  Aligned_cols=294  Identities=16%  Similarity=0.240  Sum_probs=212.1

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC--CceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+|.-.++|.++||+++++|+|..||.|.+|.--.  +.-...+.+.-|..+|++++|+++|.+|++|+..+.+.+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            35666799999999999999999999999997544  2234556777899999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEE-------eecCCcCEEEEEEcCCCc
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLI-------RKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~p~~~  157 (379)
                      +++  +.+ +..-.++|..+.++||+...+....|+.|.+..............+       +....+-.+.++++|.-+
T Consensus       282 T~~--kqf-LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  282 TGK--KQF-LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             CCC--ccc-ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            987  332 2456789999999999999999999999999765332210001111       122345667889999778


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-----------cCCcceEEEEECCCCCEEEEEc---
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-----------LSFSWAFGVKWSPSGNTLAYVG---  223 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~sp~~~~l~~~~---  223 (379)
                      .++..+..|.|.+||+.                  +...+..+.           .+...++.++.+..|.++++.-   
T Consensus       359 ~~vln~~~g~vQ~ydl~------------------td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~  420 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLY------------------TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARI  420 (792)
T ss_pred             ceeecCCCceEEEEecc------------------ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeee
Confidence            88889999999999973                  222223221           1123578888888899998863   


Q ss_pred             -----CC--CeEEEEECCCCCc---ee-eeeeeecCCeeeEEEecC--C-cEEEEEeCCCeEEEEecCC-------CcEE
Q 016982          224 -----HN--SMIYFVDDVGPSP---LA-QNVAFRDLPLRDVLFVSE--K-MVIGVGFDCNPMVFAADET-------GIWT  282 (379)
Q Consensus       224 -----~d--~~i~v~d~~~~~~---~~-~~~~~~~~~i~~~~~s~~--~-~~l~~~~d~~~~i~~~~~~-------~~~~  282 (379)
                           .|  -.+++|-.....+   +. .....|+..+...++.+.  . +.+.++.|+.+++|.....       ..|.
T Consensus       421 d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~  500 (792)
T KOG1963|consen  421 DKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT  500 (792)
T ss_pred             hhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence                 23  3588897554432   11 222356666666666542  2 4566889999999987432       1233


Q ss_pred             EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCce
Q 016982          283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK  362 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  362 (379)
                      ....                                           -.-|..+++..+ |+.||     -++++|.|++
T Consensus       501 c~~i-------------------------------------------~sy~k~~i~a~~-fs~dG-----slla~s~~~~  531 (792)
T KOG1963|consen  501 CKAI-------------------------------------------GSYHKTPITALC-FSQDG-----SLLAVSFDDT  531 (792)
T ss_pred             Eeee-------------------------------------------eccccCcccchh-hcCCC-----cEEEEecCCE
Confidence            3210                                           012788899999 88887     6788899999


Q ss_pred             EEEEeCCC
Q 016982          363 IVTWDLES  370 (379)
Q Consensus       363 v~iW~~~~  370 (379)
                      |.+||..+
T Consensus       532 Itiwd~~~  539 (792)
T KOG1963|consen  532 ITIWDYDT  539 (792)
T ss_pred             EEEecCCC
Confidence            99999988

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=1.1e-18  Score=154.89  Aligned_cols=293  Identities=18%  Similarity=0.271  Sum_probs=219.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEE-cCCCC-EEEEEeC-CCeEEE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDW-SVRSN-RIVTVSH-DRNSYV   80 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-d~~i~v   80 (379)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+..... .....+..+. ..+..+.+ ++++. .++..+. |+.+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            356789999999999999999999999999999998862 2555666543 36777777 78887 5555444 899999


Q ss_pred             EeccC-CceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-
Q 016982           81 WNQEG-SEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-  157 (379)
Q Consensus        81 w~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-  157 (379)
                      |+... .....  ....|...+..++|+|++..+++++. |+.+++|+.....   ....+ ..|...+.+++|+|++. 
T Consensus       139 ~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         139 WDLSTPGKLIR--TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK---PLSTL-AGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             EEecCCCeEEE--EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc---eEEee-ccCCCceEEEEEcCCcce
Confidence            99987 44333  34678899999999999998888886 9999999998754   34555 66899999999999997 


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE-EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      .+++++.|+.+++||.                  ..+..+. .+..|.... ...|+|++.++++++.|+.+++|++...
T Consensus       213 ~~~~~~~d~~i~~wd~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         213 LIASGSSDGTIRLWDL------------------STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             EEEEecCCCcEEEEEC------------------CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            5555589999999986                  4455555 577776664 3389999988999999999999999876


Q ss_pred             CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccc
Q 016982          237 SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSK  315 (379)
Q Consensus       237 ~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (379)
                      ......+..|...+.++.|.|++..++ ++.|+.+.+|+...........                              
T Consensus       274 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------------------------  323 (466)
T COG2319         274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------------------------  323 (466)
T ss_pred             CcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee------------------------------
Confidence            653344456788999999999776665 5666677888544332111110                              


Q ss_pred             ccCcccccccccccccccccceeeeeeecccCCcccceEEEe-ecCceEEEEeCCCcc
Q 016982          316 YGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS-GLDGKIVTWDLESQE  372 (379)
Q Consensus       316 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~-~~Dg~v~iW~~~~~~  372 (379)
                                    ..+|...|..+.+ .+++    ..++.+ ..|+.+++|++....
T Consensus       324 --------------~~~~~~~~~~~~~-~~~~----~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         324 --------------LKGHEGPVSSLSF-SPDG----SLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             --------------ecccCCceEEEEE-CCCC----CEEEEeecCCCcEEeeecCCCc
Confidence                          0257777888885 4331    345555 788999999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.88  E-value=6.2e-21  Score=151.95  Aligned_cols=232  Identities=13%  Similarity=0.197  Sum_probs=174.6

Q ss_pred             ccceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCc-----eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCC
Q 016982            3 AIAVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEK-----WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHD   75 (379)
Q Consensus         3 ~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d   75 (379)
                      .+.+-+|.++|..++|+| +...||+|+.|.+|.||++..+.     .+++..|.+|...|.-++|+|.. +.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            456789999999999999 56789999999999999987542     25678899999999999999976 788999999


Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-CEEEEEEcC
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-SVTSVAWHP  154 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p  154 (379)
                      .+|.+||+.+++....   ..|...|++++|+.+|.+|++.+.|+.|+|||.+++..   ...- ..|.+ .-..+.|-.
T Consensus       154 n~v~iWnv~tgeali~---l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~---v~e~-~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  154 NTVSIWNVGTGEALIT---LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV---VSEG-VAHEGAKPARAIFLA  226 (472)
T ss_pred             ceEEEEeccCCceeee---cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE---eeec-ccccCCCcceeEEec
Confidence            9999999999984333   34999999999999999999999999999999999873   3332 35543 334556777


Q ss_pred             CCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEE
Q 016982          155 NNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYF  230 (379)
Q Consensus       155 ~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v  230 (379)
                      ++..+.||-   .+..+-+||..    .           ....-...++.. ...|.-.-|.||.+.+..++ .|+.|+.
T Consensus       227 ~g~i~tTGfsr~seRq~aLwdp~----n-----------l~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRY  290 (472)
T KOG0303|consen  227 SGKIFTTGFSRMSERQIALWDPN----N-----------LEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRY  290 (472)
T ss_pred             cCceeeeccccccccceeccCcc----c-----------ccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEE
Confidence            888555553   37789999862    0           111222344444 34577777899888776554 7999999


Q ss_pred             EECCCCCceeeeeee--ecCCeeeEEEec
Q 016982          231 VDDVGPSPLAQNVAF--RDLPLRDVLFVS  257 (379)
Q Consensus       231 ~d~~~~~~~~~~~~~--~~~~i~~~~~s~  257 (379)
                      |.+....+.+..+..  ...+-..+.|-|
T Consensus       291 yEit~d~P~~hyln~f~S~epQRG~g~mP  319 (472)
T KOG0303|consen  291 FEITNEPPFVHYLNTFSSKEPQRGMGFMP  319 (472)
T ss_pred             EEecCCCceeEEecccccCCccccccccc
Confidence            998887655444432  133445566655

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.88  E-value=1.4e-18  Score=147.87  Aligned_cols=237  Identities=12%  Similarity=0.053  Sum_probs=151.7

Q ss_pred             EEEecCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccC-CceeeeEEeecCCCcee
Q 016982           26 AFCPNNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEG-SEWVPTLVILRLNRAAL  102 (379)
Q Consensus        26 ~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~~~~~~v~  102 (379)
                      ++...++.|.+|++.+ ++.+.+..+.. .+....++++|++++|++++ .++.|.+|++.. +....... ........
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-~~~~~~p~   83 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-SPLPGSPT   83 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-ecCCCCce
Confidence            3446789999999964 44556666653 35567899999999887664 578899999973 33222111 22334567


Q ss_pred             EEEECCCCCEEEEEeC-CCeEEEEEeecCCce-eEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccc
Q 016982          103 CVQWSPKENKFAVGSG-AKTVCICYYEQENNW-WVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVD  179 (379)
Q Consensus       103 ~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~  179 (379)
                      .++++|+++++++++. ++.|.+|+++..... .....+  .+......++++|+++++++++ .++.|.+||+..... 
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~-  160 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH-  160 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-
Confidence            8999999998888775 889999999753211 111222  2334467788999998886554 569999999731000 


Q ss_pred             cccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC-CCeEEEEECCCC--C-ceeeeeeeec------CC
Q 016982          180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH-NSMIYFVDDVGP--S-PLAQNVAFRD------LP  249 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~v~d~~~~--~-~~~~~~~~~~------~~  249 (379)
                      ..          ........... ......++|+|+|++|+++.. ++.|.+||+...  . ..++.+....      ..
T Consensus       161 l~----------~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~  229 (330)
T PRK11028        161 LV----------AQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW  229 (330)
T ss_pred             cc----------ccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence            00          00000011111 233578999999999988765 899999998742  1 1222222111      11


Q ss_pred             eeeEEEecCCcEEEEE--eCCCeEEEEecCC
Q 016982          250 LRDVLFVSEKMVIGVG--FDCNPMVFAADET  278 (379)
Q Consensus       250 i~~~~~s~~~~~l~~~--~d~~~~i~~~~~~  278 (379)
                      ...+.++|+|+++.++  .++.+.+|+.+..
T Consensus       230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        230 AADIHITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             ceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            2358899999988865  3568888887654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.88  E-value=6.2e-21  Score=144.09  Aligned_cols=297  Identities=10%  Similarity=0.121  Sum_probs=197.1

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      +.+..|.+.|+++.|..+++ |.+|..-|.|++|++.+.  .....++ .|...|+.+..-|+ ..|.+-+.|..+.+|+
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~--r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTE--RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecC--ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            45678999999999987765 888999999999999987  4555566 56778999999887 5788899999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECC-----CCC----EEEEEeCCC-eEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSP-----KEN----KFAVGSGAK-TVCICYYEQENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                      +.....+...     .-.+.++.|.+     .++    .++.-+..- .+++-|........+...-..+..+.+.+..+
T Consensus        84 ia~s~~i~i~-----Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   84 IAYSAFISIH-----SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             ccCcceEEEe-----eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            9886543332     23344444433     221    122211100 01111111111000000001234566777775


Q ss_pred             cCC-C--cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982          153 HPN-N--VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY  229 (379)
Q Consensus       153 ~p~-~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~  229 (379)
                      .-+ +  -++++|.++|.+.+||+......+..+        ...+.......|..+|.++.|.+.-..=++++.+..+.
T Consensus       159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--------~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--------QSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             cccccceEEEEEeccCCeEEEEEccCCceeeccc--------cccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            432 2  356678889999999985432111111        22344445567889999999998665567788888899


Q ss_pred             EEECCCCC---ceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccc
Q 016982          230 FVDDVGPS---PLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSE  305 (379)
Q Consensus       230 v~d~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (379)
                      .|.++...   +...+....+-.+..+..-||++++| +|.|+.+++|+      |+....+                  
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVys------wrtl~pL------------------  286 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYS------WRTLNPL------------------  286 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEE------eccCCch------------------
Confidence            99876542   12223333355688999999999999 89999999998      4432211                  


Q ss_pred             ccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          306 AFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                                            +++.-|.+.|++++ |+++.    .++|.+|.|++|.+|++
T Consensus       287 ----------------------AVLkyHsagvn~vA-fspd~----~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  287 ----------------------AVLKYHSAGVNAVA-FSPDC----ELMAAASKDARISLWKL  322 (323)
T ss_pred             ----------------------hhhhhhhcceeEEE-eCCCC----chhhhccCCceEEeeec
Confidence                                  14466999999999 77665    79999999999999997

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.87  E-value=1e-18  Score=138.37  Aligned_cols=235  Identities=13%  Similarity=0.154  Sum_probs=173.9

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC--CeEEEEeccCCc
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD--RNSYVWNQEGSE   87 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~   87 (379)
                      ...+..+.|+.+...|..|+.|| .++|+.+.-  ............|-.+-|+..  ++|..+.+  +.+++.+.+.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~--~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPF--EKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCch--HHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence            34677788999999999999886 577777653  121111222335666777743  55555443  459999999888


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCEEEEEEcCCCcEEEEee--
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSVTSVAWHPNNVFLATTS--  163 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~--  163 (379)
                      .++.+.   ....|.++.++.  +.|+++-.+ .|+|||++..+   +...+.  ..+...+.++++++.+.+++.-+  
T Consensus        80 ~ICe~~---fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mk---lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~  150 (391)
T KOG2110|consen   80 TICEIF---FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMK---LLHTIETTPPNPKGLCALSPNNANCYLAYPGST  150 (391)
T ss_pred             eEEEEe---cCCceEEEEEcc--ceEEEEEcc-cEEEEecccce---eehhhhccCCCccceEeeccCCCCceEEecCCC
Confidence            666664   367899999974  466666654 49999999877   344432  34566677777777778888643  


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCe-EEEEECCCCCceeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM-IYFVDDVGPSPLAQN  242 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-i~v~d~~~~~~~~~~  242 (379)
                      ..|.|.+||+                  ..-+++..+..|.+.+.+++|+|+|.+||+++..|+ |+|+.+.++..+ ..
T Consensus       151 t~GdV~l~d~------------------~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl-~e  211 (391)
T KOG2110|consen  151 TSGDVVLFDT------------------INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL-YE  211 (391)
T ss_pred             CCceEEEEEc------------------ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe-ee
Confidence            4789999997                  667888899999999999999999999999999886 789999888754 44


Q ss_pred             eeee--cCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          243 VAFR--DLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       243 ~~~~--~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      +.-.  ...|.+++|+|++++|+ ++..++|++|.++.
T Consensus       212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            4321  34589999999999998 56777999998765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.87  E-value=1.5e-19  Score=138.50  Aligned_cols=250  Identities=17%  Similarity=0.196  Sum_probs=181.3

Q ss_pred             CcceeEEEeCC---CCcEEEEEec----CCeEEEEEecCCceEEEEEe-ccCCCceEEEEEcCCC-----CEEEEEeCCC
Q 016982           10 AQCITCHAWSP---DHAMVAFCPN----NNEVHIYKLIQEKWEKLHVL-QKHDQIVSGIDWSVRS-----NRIVTVSHDR   76 (379)
Q Consensus        10 ~~~i~~~~~s~---~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~~~~~d~   76 (379)
                      .-+++++.|+.   ...+||.|+.    .+.|.|..+.....+.+..- ..|.-+++.+-|.|+.     ++||+++  .
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D  121 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--D  121 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--C
Confidence            45788999984   3357888864    56788877764433332221 3588899999999986     3566544  4


Q ss_pred             eEEEEeccCC--ceeeeE-----EeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           77 NSYVWNQEGS--EWVPTL-----VILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        77 ~i~vw~~~~~--~~~~~~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      .+++|.+...  +.....     ....+..++++..|+. +.++|.+++-|-+..|||++++....+...+ ..|...|.
T Consensus       122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL-IAHDKEV~  200 (364)
T KOG0290|consen  122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL-IAHDKEVY  200 (364)
T ss_pred             eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE-EecCccee
Confidence            7999998742  211111     1123567899999998 7789999999999999999997432234444 69999999


Q ss_pred             EEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcC-C
Q 016982          149 SVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGH-N  225 (379)
Q Consensus       149 ~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~-d  225 (379)
                      .++|...+ +.|++.+.||.+++||++..               .....+++-.....+...++|++ |-+++|+-.. .
T Consensus       201 DIaf~~~s~~~FASvgaDGSvRmFDLR~l---------------eHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS  265 (364)
T KOG0290|consen  201 DIAFLKGSRDVFASVGADGSVRMFDLRSL---------------EHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS  265 (364)
T ss_pred             EEEeccCccceEEEecCCCcEEEEEeccc---------------ccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence            99999866 78999999999999998311               11222333223245788899998 5667776554 4


Q ss_pred             CeEEEEECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecC
Q 016982          226 SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       226 ~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~  277 (379)
                      ..|.+.|++.+...+..+..|.+.|+.++|.|.. ..|+ +|.|..+.+|++..
T Consensus       266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            6799999999988889999999999999999954 4555 77777888888654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=4.9e-18  Score=144.53  Aligned_cols=261  Identities=12%  Similarity=0.093  Sum_probs=169.3

Q ss_pred             cCcceeEEEeCCCCcEEEEEe-cCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccC
Q 016982            9 FAQCITCHAWSPDHAMVAFCP-NNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEG   85 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~   85 (379)
                      +.+....++++|++++|++++ .++.|.+|++.. +.+....... .......++|+|++++|++++ .++.|.+|++++
T Consensus        33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            346778899999999887664 478999999973 3334444333 233457899999999888776 478899999974


Q ss_pred             Cc-eeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeE--EEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           86 SE-WVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWV--SKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        86 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      .. .........+...+..++++|+++++++++ .++.|.+||++.......  ..............+.|+|+++++++
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv  191 (330)
T PRK11028        112 DGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC  191 (330)
T ss_pred             CCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence            32 111221122334567889999999886655 469999999986431100  00110112344578999999999988


Q ss_pred             eeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecC------CcceEEEEECCCCCEEEEEc-CCCeEEEEEC
Q 016982          162 TST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS------FSWAFGVKWSPSGNTLAYVG-HNSMIYFVDD  233 (379)
Q Consensus       162 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~  233 (379)
                      +.. ++.|.+|++....              ...+.+..+...      ......+.++|++++|+++. .++.|.+|++
T Consensus       192 ~~~~~~~v~v~~~~~~~--------------~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        192 VNELNSSVDVWQLKDPH--------------GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             EecCCCEEEEEEEeCCC--------------CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            776 8999999973100              011222222211      12234689999999998885 4789999998


Q ss_pred             CCCCcee---eeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEecC-CCcEEEEE
Q 016982          234 VGPSPLA---QNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAADE-TGIWTFIK  285 (379)
Q Consensus       234 ~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~-~~~~~~~~  285 (379)
                      .......   ..... ......+.|+|+|++|+++  .++.+.+|..+. .+.+....
T Consensus       258 ~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~  314 (330)
T PRK11028        258 SEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG  314 (330)
T ss_pred             eCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence            6543221   22221 2345689999999988844  377899998763 44454443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.7e-20  Score=156.05  Aligned_cols=214  Identities=15%  Similarity=0.199  Sum_probs=175.7

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC------CceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ------EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNS   78 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (379)
                      ++..|.+.|+.++|.|....|++++.||.+++|+++.      ...+++.++.+|.++|.|+++.++++.+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            5677899999999999999999999999999999932      2468899999999999999999999999999999999


Q ss_pred             EEEeccCCc--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc--ee--------E-----
Q 016982           79 YVWNQEGSE--------WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN--WW--------V-----  135 (379)
Q Consensus        79 ~vw~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~--------~-----  135 (379)
                      +.|++....        ....-.+.+|...++.+++|+....|++++.||++++|+......  ..        +     
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~  448 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRT  448 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeec
Confidence            999765221        011223468999999999999999999999999999998765432  00        0     


Q ss_pred             --------------------------EEEEe------ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccc
Q 016982          136 --------------------------SKLIR------KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEK  183 (379)
Q Consensus       136 --------------------------~~~~~------~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  183 (379)
                                                ...+.      ......+..+.++|...+.+++..|+.|+++|.          
T Consensus       449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn----------  518 (577)
T KOG0642|consen  449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN----------  518 (577)
T ss_pred             cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc----------
Confidence                                      00000      001124567788888889999999999999995          


Q ss_pred             cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                              .++..+.....|...++++++.|+|-+|++++.|+.+++|.+...
T Consensus       519 --------~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  519 --------KTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             --------cccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence                    788999999999999999999999999999999999999987654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.86  E-value=1.9e-21  Score=168.66  Aligned_cols=241  Identities=16%  Similarity=0.159  Sum_probs=189.0

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|..+|+|+.|...|.++++|+.|..|+||..++.  .++....||.+.|+.++.+.+..++++++.|..|++|.+.
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            46789999999999999999999999999999998887  7899999999999999999988899999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      .+.++..+  .+|.+.|++++|+|-.    +.+.||++++||.+-.......+.+......-+..+.|...+..+++++.
T Consensus       263 ~~~pvsvL--rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~  336 (1113)
T KOG0644|consen  263 DGAPVSVL--RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR  336 (1113)
T ss_pred             CCchHHHH--hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence            99876666  7899999999999964    67789999999998332111112221233455677778778888999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      |+.-..|...                    .    +..+...+.-+.++.+ ..+.+++-.+-.+++|++.++. +...+
T Consensus       337 d~ea~n~e~~--------------------~----l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l  391 (1113)
T KOG0644|consen  337 DGEARNHEFE--------------------Q----LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-LLHNL  391 (1113)
T ss_pred             Ccccccchhh--------------------H----hhhhccceEEEeccccccccceeeeeeeEeeeeecccch-hhhhh
Confidence            9998888641                    0    0011111222222222 2466777788899999998876 44777


Q ss_pred             eeecCCeeeEEEecCCcEEE--EEeCCCeEEEEecCC
Q 016982          244 AFRDLPLRDVLFVSEKMVIG--VGFDCNPMVFAADET  278 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i~~~~~~  278 (379)
                      .+|...+..+.++|-+..++  ++.|+...||+.-.+
T Consensus       392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG  428 (1113)
T ss_pred             cccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence            78899999999999777666  899999999986543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=2.2e-20  Score=158.64  Aligned_cols=240  Identities=14%  Similarity=0.162  Sum_probs=182.8

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .++++|.+.|+|++|+.||+++|+|+.|..|.+|+.+-.   -+-. ..|.+.|.|+.|+|-...|++++-+ ..-+|..
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~  121 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSP  121 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceee-eccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence            357899999999999999999999999999999986532   2222 3589999999999999999998864 4778987


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-----cE
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-----VF  158 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~  158 (379)
                      .......    ......+.+++|..||++++.|-.+|+|.+-+-...+.. ..... .+...+|.+++|+|..     ..
T Consensus       122 ~qK~V~K----~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~-~I~Rp-gg~Nspiwsi~~~p~sg~G~~di  195 (1081)
T KOG1538|consen  122 EQKSVSK----HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV-KIERP-GGSNSPIWSICWNPSSGEGRNDI  195 (1081)
T ss_pred             hhhhHHh----hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce-EEeCC-CCCCCCceEEEecCCCCCCccce
Confidence            7664221    234578899999999999999999999998654333311 11111 4567899999999963     57


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      +++.....++.+|.+                   +++.+..-..-.-...++.+-|+|.+++.|+.|+.+++|- +.+- 
T Consensus       196 ~aV~DW~qTLSFy~L-------------------sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~Gv-  254 (1081)
T KOG1538|consen  196 LAVADWGQTLSFYQL-------------------SGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGV-  254 (1081)
T ss_pred             EEEEeccceeEEEEe-------------------cceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCe-
Confidence            778888888888875                   2444432222233457899999999999999999999996 3333 


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEe
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      .+-++...+..|+.++..|+++.++ ++.||++..|+.
T Consensus       255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            2344544678899999999999887 778999887764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2e-20  Score=150.44  Aligned_cols=201  Identities=15%  Similarity=0.178  Sum_probs=154.5

Q ss_pred             eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE
Q 016982           14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~   93 (379)
                      .+++|+++|..|++|+.||.+++|+....  ..+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            78999999999999999999999997664  5666677788999999999999999999999 89999999996555554


Q ss_pred             eecCCCceeEEEECCCC-----CEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           94 ILRLNRAALCVQWSPKE-----NKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        94 ~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      ..........+.|+.++     ..++....-+.|+.|++..-......+..+ ......|.+++.+++|++++.|+.||.
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence            34445667788888876     333333445667777664432110111110 123357999999999999999999999


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEE-EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      |.|++.                  ...+.++ .-+.|...|+.+.|+|+.+++++.+.+.+..+..+..
T Consensus       305 Vai~~~------------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  305 VAIYDA------------------KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEEe------------------ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999996                  3334333 3367888999999999999999999999888887654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.1e-20  Score=152.94  Aligned_cols=304  Identities=15%  Similarity=0.155  Sum_probs=216.9

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC--CEEEEEeCCCeEEEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS--NRIVTVSHDRNSYVW   81 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw   81 (379)
                      ..|-.|.+.|..|.|+..|..|++|+.|..|.+||...+. ..+.-..+|...|..-.|-|..  +-|++++.||.+++=
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            3577899999999999999999999999999999998763 3444456788888888898854  679999999999987


Q ss_pred             eccC-CceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc---CEEEEEEcCCC
Q 016982           82 NQEG-SEWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS---SVTSVAWHPNN  156 (379)
Q Consensus        82 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~  156 (379)
                      .+.. +.+.....+..|.++|..++.-|+ ...|.+++.|+.+.-+|++...+......- ..+..   ....++..|..
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr-~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR-EADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee-ccCCccceeeeeEecCCCC
Confidence            7643 444445566789999999999995 457889999999999999887753332221 33333   57889999976


Q ss_pred             -cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe------ecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982          157 -VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL------DLSFSWAFGVKWSPSGNTLAYVGHNSMIY  229 (379)
Q Consensus       157 -~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~sp~~~~l~~~~~d~~i~  229 (379)
                       ..+++++.|-.+++||...-..+      .      ....+..+      ......|++++|+.++.-|+++-.|-.|+
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e------~------~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY  361 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKE------E------NNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY  361 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhc------c------ccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence             58999999999999996311111      0      00111222      12234689999998777777777888899


Q ss_pred             EEECCC--C---------Cceee-eeeeecC--CeeeEEE-ecCCcEEEEEeCC-CeEEEEecCCCcEEEEEEecccccC
Q 016982          230 FVDDVG--P---------SPLAQ-NVAFRDL--PLRDVLF-VSEKMVIGVGFDC-NPMVFAADETGIWTFIKFLDERKTS  293 (379)
Q Consensus       230 v~d~~~--~---------~~~~~-~~~~~~~--~i~~~~~-s~~~~~l~~~~d~-~~~i~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      ++.-..  +         .+... .+++|..  .|..+-| -|...|+++|+|+ .|.+|.-.......++         
T Consensus       362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M---------  432 (559)
T KOG1334|consen  362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM---------  432 (559)
T ss_pred             EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh---------
Confidence            995321  1         01222 3667743  3777765 5788999988876 6778875544322221         


Q ss_pred             CCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982          294 SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                                                           .|...-|+|+..++..     .+|||+|-|..|+||--.+.+
T Consensus       433 -------------------------------------egDr~VVNCLEpHP~~-----PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  433 -------------------------------------EGDRHVVNCLEPHPHL-----PVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             -------------------------------------hcccceEeccCCCCCC-----chhhccCCccceeeecCCccc
Confidence                                                 2333379999976444     699999999999999875433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.85  E-value=2.6e-19  Score=156.88  Aligned_cols=220  Identities=14%  Similarity=0.140  Sum_probs=154.1

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYV   80 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v   80 (379)
                      .+..|...+.+.+|||||+.|++.+.+   ..|++||+.+++.+.+..+.+|.   ..++|+|||+.|+.++ .+|.+.|
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~I  274 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNI  274 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEE
Confidence            356677889999999999999987653   37999999887545555555543   4689999999888764 6776555


Q ss_pred             E--eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           81 W--NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        81 w--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      |  |+.+++... +  ..+...+....|+|||+.|+..+ .++...||+++....  ....+  .+..  ....|+|+|+
T Consensus       275 y~~d~~~~~~~~-l--t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~--~~~~l--~~~~--~~~~~SpDG~  345 (429)
T PRK01742        275 YVMGANGGTPSQ-L--TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG--GASLV--GGRG--YSAQISADGK  345 (429)
T ss_pred             EEEECCCCCeEe-e--ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEe--cCCC--CCccCCCCCC
Confidence            4  666665322 2  34566788999999999877665 478889998876442  12222  2333  4578999999


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC--C
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV--G  235 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~--~  235 (379)
                      +|+..+.++ +.+||+                  .+++.......  .....+.|+|+|++|++++.++...+|++.  +
T Consensus       346 ~ia~~~~~~-i~~~Dl------------------~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~  404 (429)
T PRK01742        346 TLVMINGDN-VVKQDL------------------TSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD  404 (429)
T ss_pred             EEEEEcCCC-EEEEEC------------------CCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            998887765 556886                  33332221111  123567899999999999988888877652  2


Q ss_pred             CCceeeeeeeecCCeeeEEEecC
Q 016982          236 PSPLAQNVAFRDLPLRDVLFVSE  258 (379)
Q Consensus       236 ~~~~~~~~~~~~~~i~~~~~s~~  258 (379)
                      +. ..+.+..|.+.+..++|+|-
T Consensus       405 G~-~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        405 GR-FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CC-ceEEccCCCCCCCCcccCCC
Confidence            33 45677777788889999984

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=4.3e-17  Score=144.59  Aligned_cols=288  Identities=19%  Similarity=0.285  Sum_probs=211.2

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEec-CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCC-EEEEEeCCCeEEEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPN-NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSN-RIVTVSHDRNSYVW   81 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw   81 (379)
                      ..+..|...|.+++|+|++..++.++. ++.+++|+....  ..+..+.+|...|.+++|+|++. .+++++.|+.+++|
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w  226 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG--KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW  226 (466)
T ss_pred             EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC--ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence            346778999999999999998888875 999999999875  67778888999999999999997 55555899999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      |...+..... ....|.... -..|+|++..+++++.|+.+++|+......  ....+ ..|...+.++.|.|++..+++
T Consensus       227 d~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         227 DLSTGKLLRS-TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTL-SGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             ECCCCcEEee-ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEE-ecCCccEEEEEECCCCCEEEE
Confidence            8886664442 234565554 338999998899999999999999987763  12333 578899999999998888888


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEee--cCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCc
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD--LSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSP  238 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~  238 (379)
                      ++.|+.+.+|+.                  ..........  .|...+..+.|.+++..++.+ ..|+.+.+|++.... 
T Consensus       302 ~~~d~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-  362 (466)
T COG2319         302 GSSDGTVRLWDL------------------ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-  362 (466)
T ss_pred             eeCCCcEEEEEc------------------CCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-
Confidence            888988999986                  3344333333  666678999994343556555 678899999988765 


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEE--EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccc
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIG--VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKY  316 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (379)
                      ....... ...+..+.+.+ ...+.  ...++.+.+|...........                                
T Consensus       363 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  408 (466)
T COG2319         363 PLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL--------------------------------  408 (466)
T ss_pred             eeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec--------------------------------
Confidence            2222222 22278888888 53333  357778888876543211110                                


Q ss_pred             cCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          317 GVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       317 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                    ..+...+.... +.+++    ..+++++.++.+++|+..+
T Consensus       409 --------------~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         409 --------------DGHTSRVTSLD-FSPDG----KSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             --------------cCCCCcEEEEE-ECCCC----cEEEEecCCCcEEEEeccC
Confidence                          11114566666 55554    7899999999999999876

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3.1e-20  Score=154.55  Aligned_cols=261  Identities=16%  Similarity=0.187  Sum_probs=180.0

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC------CceeeeEEeecCCCceeEEEECCCCCEEEEEe
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG------SEWVPTLVILRLNRAALCVQWSPKENKFAVGS  117 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  117 (379)
                      |....++..|.+.|+.++|.|....|++++.|+++.+|+++.      ....+.+.+.+|.++|.|+++.+++..+++|+
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            445557888999999999999999999999999999999932      34667788899999999999999999999999


Q ss_pred             CCCeEEEEEeecCC-------ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccC
Q 016982          118 GAKTVCICYYEQEN-------NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSD  190 (379)
Q Consensus       118 ~d~~v~i~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  190 (379)
                      .||+|+.|++....       ...+...+ .+|.+.++.+++++....|++++.||++++|+..                
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l-~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~----------------  426 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTL-LGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT----------------  426 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccce-eccccceeeeeecccccceeeecCCceEEeeccC----------------
Confidence            99999999765321       11234445 7999999999999999999999999999999852                


Q ss_pred             CcccceEEEeec--CCcceEEEEECCCCCEE-EEEcCCCeEEEEECCCCCceeeeeee-------ecCCeeeEEEecCCc
Q 016982          191 TKFGEQILQLDL--SFSWAFGVKWSPSGNTL-AYVGHNSMIYFVDDVGPSPLAQNVAF-------RDLPLRDVLFVSEKM  260 (379)
Q Consensus       191 ~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~  260 (379)
                         .....+|..  ..+...++++-...-.. ++...-+.--++++...... ..+..       ....+..+.+.|.+.
T Consensus       427 ---~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~-~~~~s~~~~~~~~~~~in~vVs~~~~~  502 (577)
T KOG0642|consen  427 ---EESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDL-LIFESSASPGPRRYPQINKVVSHPTAD  502 (577)
T ss_pred             ---CcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhhe-eeccccCCCcccccCccceEEecCCCC
Confidence               111122211  12233455554332111 11112222223333322211 11111       113366778888776


Q ss_pred             EEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceee
Q 016982          261 VIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINC  339 (379)
Q Consensus       261 ~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  339 (379)
                      +.. +..|+.+++++........                                              ...+|...+++
T Consensus       503 ~~~~~hed~~Ir~~dn~~~~~l~----------------------------------------------s~~a~~~svts  536 (577)
T KOG0642|consen  503 ITFTAHEDRSIRFFDNKTGKILH----------------------------------------------SMVAHKDSVTS  536 (577)
T ss_pred             eeEecccCCceecccccccccch----------------------------------------------heeeccceecc
Confidence            666 4567788877754432111                                              12468899999


Q ss_pred             eeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          340 IVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       340 ~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                      ++ +.+.+    .+|++++.||.|++|++....+.+.
T Consensus       537 la-i~~ng----~~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  537 LA-IDPNG----PYLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             ee-ecCCC----ceEEeecCCceeehhhccchheeec
Confidence            99 65554    8999999999999999987666553

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.85  E-value=1.3e-18  Score=157.25  Aligned_cols=339  Identities=12%  Similarity=0.088  Sum_probs=204.6

Q ss_pred             cceeccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCC-----ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 016982            4 IAVHQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQE-----KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN   77 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   77 (379)
                      ..++.|...|..++.++.. .+|++|+.||+|++|+...-     ..+...++......+.++...+.++.+|.++.||.
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence            3578889999999988754 99999999999999998642     12333344434678899999999999999999999


Q ss_pred             EEEEeccCCceee-----eEEeec-CCCceeE-EEECC-CCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           78 SYVWNQEGSEWVP-----TLVILR-LNRAALC-VQWSP-KEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        78 i~vw~~~~~~~~~-----~~~~~~-~~~~v~~-~~~~~-~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      |.+.+++......     ...... ..+.+.+ -+|.. ... .++.+...+.|..||.+.....+..+.  ....+.|+
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~--~~~hG~vT 1199 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN--QLRHGLVT 1199 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc--Ccccccee
Confidence            9999987621101     000011 1223333 33333 233 788888889999999988764332222  23457899


Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cCCcceEEEEECCC---CCEEEEEc-
Q 016982          149 SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSFSWAFGVKWSPS---GNTLAYVG-  223 (379)
Q Consensus       149 ~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~---~~~l~~~~-  223 (379)
                      +++.+|.+++++.|+..|.+.+||+                  +.+.++..+. .+..++..+..+|-   ....++++ 
T Consensus      1200 Si~idp~~~WlviGts~G~l~lWDL------------------RF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDL------------------RFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred             EEEecCCceEEEEecCCceEEEEEe------------------ecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence            9999999999999999999999997                  5666666653 33467888888773   24555444 


Q ss_pred             -CCCeEEEEECCCCCceeeeeeee-c----------------CC---eeeEEEecCCcEEEEEeCCCeEEEEecCCCcE-
Q 016982          224 -HNSMIYFVDDVGPSPLAQNVAFR-D----------------LP---LRDVLFVSEKMVIGVGFDCNPMVFAADETGIW-  281 (379)
Q Consensus       224 -~d~~i~v~d~~~~~~~~~~~~~~-~----------------~~---i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~-  281 (379)
                       ..+.|.+|++.++... ..+-.. +                ..   +.+..-.+.+-.+.+++|..|+.|+......- 
T Consensus      1262 ~~~nevs~wn~~~g~~~-~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss 1340 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQ-TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS 1340 (1431)
T ss_pred             cCCCceeeeecccCcce-EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc
Confidence             5688999999887422 222211 0                00   11111223444566889999999987643211 


Q ss_pred             -EEEEEeccccc----CCCCCccCCCcccccceeec--ccc-ccCcccc-cccccccccccccceeeeeeecccCCcccc
Q 016982          282 -TFIKFLDERKT----SSSGPKYGSQFSEAFGKLYG--QSK-YGVGNDA-VESSRTRGGTHVNCINCIVPLREAGSSRIT  352 (379)
Q Consensus       282 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  352 (379)
                       .+.+.-.....    ..........+...+.....  ... .+..... .......-..|.+.|++++.+..+.    .
T Consensus      1341 ~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q----~ 1416 (1431)
T KOG1240|consen 1341 YAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQ----P 1416 (1431)
T ss_pred             ccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCc----c
Confidence             11100000000    00000000011111000000  000 0000000 0111112357999999999765544    7


Q ss_pred             eEEEeecCceEEEEe
Q 016982          353 RFTTSGLDGKIVTWD  367 (379)
Q Consensus       353 ~l~t~~~Dg~v~iW~  367 (379)
                      +|++++.||.|+||.
T Consensus      1417 llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1417 LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             EEEEecCCCeeeecC
Confidence            999999999999995

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=1.7e-19  Score=143.79  Aligned_cols=208  Identities=18%  Similarity=0.181  Sum_probs=161.9

Q ss_pred             EEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCce-----eeeEEeecCCCceeEEEECCC-CCEEEEEeCCC
Q 016982           48 HVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEW-----VPTLVILRLNRAALCVQWSPK-ENKFAVGSGAK  120 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~  120 (379)
                      -.+.+|.++|..++|+|-. +.||+|+.|.+|.||.+..+..     .+...+.+|...|--++|+|. .+.|++++.|.
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            3467899999999999965 7899999999999999876522     234556789999999999994 57899999999


Q ss_pred             eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe
Q 016982          121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL  200 (379)
Q Consensus       121 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (379)
                      .|.+||+.++..   .-.+  .|.+.|++++|+.+|.+|++.+.|..|+|||.                  +.++.+..-
T Consensus       155 ~v~iWnv~tgea---li~l--~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp------------------r~~~~v~e~  211 (472)
T KOG0303|consen  155 TVSIWNVGTGEA---LITL--DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP------------------RRGTVVSEG  211 (472)
T ss_pred             eEEEEeccCCce---eeec--CCCCeEEEEEeccCCceeeeecccceeEEEcC------------------CCCcEeeec
Confidence            999999999983   3444  49999999999999999999999999999996                  778888777


Q ss_pred             ecCCc-ceEEEEECCCCCEEEEE---cCCCeEEEEECCCCCcee--eeeeeecCCeeeEEEecCCcEEE--EEeCCCeEE
Q 016982          201 DLSFS-WAFGVKWSPSGNTLAYV---GHNSMIYFVDDVGPSPLA--QNVAFRDLPLRDVLFVSEKMVIG--VGFDCNPMV  272 (379)
Q Consensus       201 ~~~~~-~v~~~~~sp~~~~l~~~---~~d~~i~v~d~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i  272 (379)
                      .+|.+ .-..+.|-.+|..+.+|   ..+..+-+||..+-.+.+  +.+. ..+.|.-.-|.+|..++.  +-.|+.|+.
T Consensus       212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRY  290 (472)
T KOG0303|consen  212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRY  290 (472)
T ss_pred             ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence            67755 34566777888844443   257789999976654332  2332 234566666778877554  557899999


Q ss_pred             EEecCCC
Q 016982          273 FAADETG  279 (379)
Q Consensus       273 ~~~~~~~  279 (379)
                      |...+..
T Consensus       291 yEit~d~  297 (472)
T KOG0303|consen  291 FEITNEP  297 (472)
T ss_pred             EEecCCC
Confidence            9988754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.85  E-value=3.7e-19  Score=154.90  Aligned_cols=253  Identities=18%  Similarity=0.203  Sum_probs=178.5

Q ss_pred             eeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEE----EEeccCCCceEEEEEcCCC--CEEEEEeCCCeE
Q 016982            6 VHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKL----HVLQKHDQIVSGIDWSVRS--NRIVTVSHDRNS   78 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i   78 (379)
                      .+.....|+|+.|+| +..++|.|+.+|.|.+||+..+...+.    .....|..++..+.|..+.  .-+++++.||.|
T Consensus       238 ~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i  317 (555)
T KOG1587|consen  238 VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSI  317 (555)
T ss_pred             EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcE
Confidence            455678999999999 667888999999999999987643212    2234588899999997654  448999999999


Q ss_pred             EEEeccCCceeee---EEee-------cCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCcee-----EEEEEeec
Q 016982           79 YVWNQEGSEWVPT---LVIL-------RLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWW-----VSKLIRKR  142 (379)
Q Consensus        79 ~vw~~~~~~~~~~---~~~~-------~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~-----~~~~~~~~  142 (379)
                      ..|+++.-.....   ....       .....+++++|.+ +.+.+++|+++|.|.--+........     ..... ..
T Consensus       318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~-~~  396 (555)
T KOG1587|consen  318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF-IT  396 (555)
T ss_pred             eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc-cc
Confidence            9998765321110   0001       1234688999998 56789999999998763332222111     11122 56


Q ss_pred             CCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC-CEEEE
Q 016982          143 HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG-NTLAY  221 (379)
Q Consensus       143 ~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~  221 (379)
                      |.++|+++.++|-+..++..+.|.+++||..                 .....++..+..+...+++++|||.. ..+++
T Consensus       397 h~g~v~~v~~nPF~~k~fls~gDW~vriWs~-----------------~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  397 HIGPVYAVSRNPFYPKNFLSVGDWTVRIWSE-----------------DVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             cCcceEeeecCCCccceeeeeccceeEeccc-----------------cCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence            8899999999998754444444999999985                 12455666677777779999999965 45777


Q ss_pred             EcCCCeEEEEECCCCC-ceeeeeeeecCCeeeEEEecCCcEEEEE-eCCCeEEEEec
Q 016982          222 VGHNSMIYFVDDVGPS-PLAQNVAFRDLPLRDVLFVSEKMVIGVG-FDCNPMVFAAD  276 (379)
Q Consensus       222 ~~~d~~i~v~d~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~  276 (379)
                      +..||.|.+||+.... ..+.....+....+.+.|+++|++|++| ..|.+.++...
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            7889999999987642 2233443345667788999999999965 56678887764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=8.7e-18  Score=147.21  Aligned_cols=300  Identities=12%  Similarity=0.147  Sum_probs=203.9

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceE--EEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC--Cce
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE--KLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG--SEW   88 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~--~~~   88 (379)
                      -.++.+++.|.+.+..- +..+.+|....+...  ....-..|...+++.++||++++++++..||.|.+|.--.  +.-
T Consensus       163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence            45678888887776664 467889988875211  1111234666789999999999999999999999996433  221


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                      .....+.-|...|.+++|+++|.+|++|+..+.+.+|.+.+++    .+.+ ..-.++|..+.++||+.+.+....|+.|
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~----kqfL-PRLgs~I~~i~vS~ds~~~sl~~~DNqI  316 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK----KQFL-PRLGSPILHIVVSPDSDLYSLVLEDNQI  316 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC----cccc-cccCCeeEEEEEcCCCCeEEEEecCceE
Confidence            1122235588899999999999999999999999999999987    3444 6677899999999999999999999999


Q ss_pred             EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee----
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA----  244 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----  244 (379)
                      .+...........-..  ...  .+...   -....+-.+.+.++|.-+.++..+..|.|.+||+.+...+ ..+.    
T Consensus       317 ~li~~~dl~~k~tIsg--i~~--~~~~~---k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~  388 (792)
T KOG1963|consen  317 HLIKASDLEIKSTISG--IKP--PTPST---KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDE  388 (792)
T ss_pred             EEEeccchhhhhhccC--ccC--CCccc---cccccccceeEEEcCCCCceeecCCCceEEEEecccccee-eeEEEEee
Confidence            9987521110000000  000  00000   0111334677899997777888889999999999876643 2222    


Q ss_pred             -e------ecCCeeeEEEecCCcEEEEEe---------C--CCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCccc
Q 016982          245 -F------RDLPLRDVLFVSEKMVIGVGF---------D--CNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFSE  305 (379)
Q Consensus       245 -~------~~~~i~~~~~s~~~~~l~~~~---------d--~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (379)
                       .      +.-.+++++.+..|.++++..         |  -.+++|..++ ...|.+....                  
T Consensus       389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I------------------  450 (792)
T KOG1963|consen  389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI------------------  450 (792)
T ss_pred             cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE------------------
Confidence             1      122467777777888888542         2  2355666554 2334443322                  


Q ss_pred             ccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          306 AFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                              ...|...+...++.++..   ....+|+|.||.++||-+.+.
T Consensus       451 ------------------------~~PH~~~~vat~~~~~~r---s~~~vta~~dg~~KiW~~~~~  489 (792)
T KOG1963|consen  451 ------------------------NNPHGNAFVATIFLNPTR---SVRCVTASVDGDFKIWVFTDD  489 (792)
T ss_pred             ------------------------ecCCCceeEEEEEecCcc---cceeEEeccCCeEEEEEEecc
Confidence                                    235877777777555443   238999999999999999543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=1.8e-18  Score=134.49  Aligned_cols=209  Identities=16%  Similarity=0.215  Sum_probs=164.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982           53 HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN  131 (379)
Q Consensus        53 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~  131 (379)
                      ...+|+|.+|++|+..++.+..+..|.||.....+ +.+...+..|...|+.++|+|..+.|++++.|..-++|....+.
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            35689999999999999999999999999998887 67777778899999999999999999999999999999987666


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK  211 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  211 (379)
                      .|...-.+ ..+....+++.|+|..+.|++|+....|.||-... +.+.             .-..+.-..+...|++++
T Consensus        89 ~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~-ENdW-------------WVsKhikkPirStv~sld  153 (361)
T KOG1523|consen   89 TWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ-ENDW-------------WVSKHIKKPIRSTVTSLD  153 (361)
T ss_pred             eeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEec-ccce-------------ehhhhhCCccccceeeee
Confidence            66555555 67889999999999999999999999999997520 0000             000011123456799999


Q ss_pred             ECCCCCEEEEEcCCCeEEEEEC-----CCC------------CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEE
Q 016982          212 WSPSGNTLAYVGHNSMIYFVDD-----VGP------------SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVF  273 (379)
Q Consensus       212 ~sp~~~~l~~~~~d~~i~v~d~-----~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~  273 (379)
                      |+|++-+|++|+.|+..+++..     ...            .+++.+.....+.+..+.|+|+|..|+ .+.|..+.+-
T Consensus       154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~  233 (361)
T KOG1523|consen  154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV  233 (361)
T ss_pred             ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence            9999999999999999999852     111            012223333467799999999999999 8899888765


Q ss_pred             Eec
Q 016982          274 AAD  276 (379)
Q Consensus       274 ~~~  276 (379)
                      +..
T Consensus       234 da~  236 (361)
T KOG1523|consen  234 DAA  236 (361)
T ss_pred             ecC
Confidence            543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=1.9e-19  Score=149.15  Aligned_cols=208  Identities=14%  Similarity=0.260  Sum_probs=159.1

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCcee
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAAL  102 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~  102 (379)
                      ..|+.++.||.+.|.+-..   +....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-. |-+...+  .....+|+
T Consensus        76 d~~~i~s~DGkf~il~k~~---rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl--~Q~~~~v~  149 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA---RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTV--VQNEESIR  149 (737)
T ss_pred             ceEEEEcCCceEEEecccc---hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHH--hhcCceeE
Confidence            4688888999999987554   4667788999999999999999999999999999999854 3322222  33567899


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccccc
Q 016982          103 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE  182 (379)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~  182 (379)
                      |++|.|+.+.++.+.. +.+.|-.+.....   .-.. ..|.+-|.++.|+|.++.+++|++|-..++||          
T Consensus       150 c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k---~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD----------  214 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQG-GHISIKPLAANSK---IIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD----------  214 (737)
T ss_pred             EEEECCCCCceEEecC-CeEEEeecccccc---eeEE-eccCcEEEEeecCccccceeecCCceeEEeec----------
Confidence            9999999887777654 4555544444331   2222 79999999999999999999999999999999          


Q ss_pred             ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE
Q 016982          183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI  262 (379)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  262 (379)
                               ..+..+..-..|..+|++++|+|+ ..++.++. .+++            .-....+.|..++||+||..+
T Consensus       215 ---------~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~  271 (737)
T KOG1524|consen  215 ---------AQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQA  271 (737)
T ss_pred             ---------ccCcccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceEEEEEcCCCcee
Confidence                     457888888889999999999999 55555543 3333            111235679999999999999


Q ss_pred             EEEeCCCeEEEE
Q 016982          263 GVGFDCNPMVFA  274 (379)
Q Consensus       263 ~~~~d~~~~i~~  274 (379)
                      +++......++.
T Consensus       272 a~gt~~G~v~~A  283 (737)
T KOG1524|consen  272 TCGTSTGQLIVA  283 (737)
T ss_pred             eccccCceEEEe
Confidence            976555544443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.83  E-value=4.1e-18  Score=149.33  Aligned_cols=212  Identities=14%  Similarity=0.135  Sum_probs=144.2

Q ss_pred             CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEEC
Q 016982           31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWS  107 (379)
Q Consensus        31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  107 (379)
                      +..|++||.....   ...+..|...+.+++|+|||++|+.++.+   ..|++||+.+++.....   ...+....++|+
T Consensus       183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~---~~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA---SFRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCC---ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe---cCCCccCceeEC
Confidence            4689999987652   34566778889999999999999887643   36999999887633322   223344578999


Q ss_pred             CCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccC
Q 016982          108 PKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       108 ~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~  185 (379)
                      |||+.|+.++ .+|.+.||.++....  ....+ ..+...+....|+|||+.|+..+ .++...||++.           
T Consensus       257 PDG~~La~~~~~~g~~~Iy~~d~~~~--~~~~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~-----------  322 (429)
T PRK01742        257 PDGSRLAFASSKDGVLNIYVMGANGG--TPSQL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS-----------  322 (429)
T ss_pred             CCCCEEEEEEecCCcEEEEEEECCCC--CeEee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE-----------
Confidence            9999888865 578777765543221  13344 45666788999999998777655 57888888762           


Q ss_pred             CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-E
Q 016982          186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-V  264 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~  264 (379)
                            ..+.....+ .+..  ..+.|+|+|++|++.+.++ +.+||+.++...  .+... ....++.|+|||++|+ +
T Consensus       323 ------~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~--~lt~~-~~~~~~~~sPdG~~i~~~  389 (429)
T PRK01742        323 ------ASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE--VLSST-FLDESPSISPNGIMIIYS  389 (429)
T ss_pred             ------CCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE--EecCC-CCCCCceECCCCCEEEEE
Confidence                  111112222 2222  4578999999998887765 556998876532  22211 2346788999999888 5


Q ss_pred             EeCCCeEEEEe
Q 016982          265 GFDCNPMVFAA  275 (379)
Q Consensus       265 ~~d~~~~i~~~  275 (379)
                      +.++...+|..
T Consensus       390 s~~g~~~~l~~  400 (429)
T PRK01742        390 STQGLGKVLQL  400 (429)
T ss_pred             EcCCCceEEEE
Confidence            56777766653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.83  E-value=6.7e-19  Score=145.97  Aligned_cols=227  Identities=15%  Similarity=0.215  Sum_probs=157.3

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCce-EEEEEcC-------CCCEEEEEeCCCeE
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIV-SGIDWSV-------RSNRIVTVSHDRNS   78 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v-~~~~~~~-------~~~~l~~~~~d~~i   78 (379)
                      ..|...+.|+.|+.+...+.++..+..+.-|++.+...+. ..+.  ...| +.+..-+       ....++.++.||.+
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~-~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV-AKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchhhhh-hhCC--cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence            3567788899999887777666544444444554432111 1111  1111 1111111       12468888999999


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      .+.+-. ++....+  ..|.+.+.+-.|+|+|.-|+++++||.|++|.-. +-   +...+ .....+|+|++|.|+.+.
T Consensus        88 ~il~k~-~rVE~sv--~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM---LRStl-~Q~~~~v~c~~W~p~S~~  159 (737)
T KOG1524|consen   88 VILNKS-ARVERSI--SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM---LRSTV-VQNEESIRCARWAPNSNS  159 (737)
T ss_pred             EEeccc-chhhhhh--hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch---HHHHH-hhcCceeEEEEECCCCCc
Confidence            988743 3333333  6799999999999999999999999999999643 32   12223 556789999999999866


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      ++.+. .+.+.|=-+                  .....+.....|.+-|.++.|+|..+++++|++|-..++||-...  
T Consensus       160 vl~c~-g~h~~IKpL------------------~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~--  218 (737)
T KOG1524|consen  160 IVFCQ-GGHISIKPL------------------AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA--  218 (737)
T ss_pred             eEEec-CCeEEEeec------------------ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc--
Confidence            66543 345555443                  334556677899999999999999999999999999999996543  


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEEEEe
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~  266 (379)
                      .+..-..|..+|++++|.|+ +.++.++
T Consensus       219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S  245 (737)
T KOG1524|consen  219 NLFTSAAEEYAITSVAFNPE-KDYLLWS  245 (737)
T ss_pred             ccccCChhccceeeeeeccc-cceeeee
Confidence            23555678999999999999 5444433

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=9.5e-18  Score=125.64  Aligned_cols=235  Identities=15%  Similarity=0.119  Sum_probs=171.3

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCC--------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      ..|.+-+++|.+++|++|..+|.|.++.++.-        ...++-..++|+++|+.++|.  ..+|++++ ||.|+=|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            45667789999999999999999999998631        123455568999999999998  44677766 59999887


Q ss_pred             ccCCc----eeeeEEee--c-----CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982           83 QEGSE----WVPTLVIL--R-----LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        83 ~~~~~----~~~~~~~~--~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  151 (379)
                      .....    +++..+..  -     .-..|+++...|..+-++.++.|+.++-||++++.   +.+.+ .+|.+.+.++.
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~---i~r~~-rGHtDYvH~vv  163 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR---IQREY-RGHTDYVHSVV  163 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE---EEEEE-cCCcceeeeee
Confidence            65431    11111111  0     12468899999987777777789999999999998   56666 99999999999


Q ss_pred             EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC----------CcceEEEEECCCCCEEEE
Q 016982          152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS----------FSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~sp~~~~l~~  221 (379)
                      -......+++|++||++++||+                  ++.+++..+...          ..+|-+++  -+..+|++
T Consensus       164 ~R~~~~qilsG~EDGtvRvWd~------------------kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvC  223 (325)
T KOG0649|consen  164 GRNANGQILSGAEDGTVRVWDT------------------KTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVC  223 (325)
T ss_pred             ecccCcceeecCCCccEEEEec------------------cccceeEEeccccChhhcCcccCceeEEEe--ccCceEEe
Confidence            8666678999999999999997                  667777666432          22454554  45667876


Q ss_pred             EcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          222 VGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       222 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      | ....+.+|.++..+. .+.+. -..++..+.|.. ...|++|..+.+.-|.++
T Consensus       224 G-gGp~lslwhLrsse~-t~vfp-ipa~v~~v~F~~-d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  224 G-GGPKLSLWHLRSSES-TCVFP-IPARVHLVDFVD-DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             c-CCCceeEEeccCCCc-eEEEe-cccceeEeeeec-ceEEEeccccceeeeeec
Confidence            5 456799999998764 35554 356777888854 456666666677766654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.5e-19  Score=143.40  Aligned_cols=202  Identities=13%  Similarity=0.071  Sum_probs=149.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE
Q 016982           58 SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK  137 (379)
Q Consensus        58 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  137 (379)
                      ..++|+++|..|++++.||++++|++.+...  ......|.+.|.++.|+|||++|++.+.| ..+||+.+++..+  ..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~--a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAAL--AR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchh--hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchh--hh
Confidence            4789999999999999999999999877763  33446789999999999999999999999 8999999998531  11


Q ss_pred             EEeecCCcCEEEEEEcCCC-----cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEE
Q 016982          138 LIRKRHDSSVTSVAWHPNN-----VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKW  212 (379)
Q Consensus       138 ~~~~~~~~~v~~~~~~p~~-----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  212 (379)
                      .-..........+.|+.|+     ..++....-+.|+.||+.....+            ...+ ..+.......|++++.
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~------------~~l~-~~~~~~~~~siSsl~V  289 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS------------NFLR-LRKKIKRFKSISSLAV  289 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc------------cccc-hhhhhhccCcceeEEE
Confidence            1112344456677888776     33333344567888876322111            0001 1111122345999999


Q ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          213 SPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       213 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      +++|++++.|+.||.|.|++..+.+.....-+.|...|+.+.|+||.++++ .+.+....+..+..
T Consensus       290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999999998887655555567889999999999999888 77888888877654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=8.8e-19  Score=145.70  Aligned_cols=234  Identities=12%  Similarity=0.148  Sum_probs=163.6

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEE-eccCCCceEEEEEcCC--CCEEEEEeCCCeEEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHV-LQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYV   80 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v   80 (379)
                      .+|.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||....  ++++. -.+|...|.++.|-|.  .+.+++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhc--ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            468899999999999999999999999999999999864  44443 4689999999999985  468899999999999


Q ss_pred             EeccCC--------ceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEE----EEe--ecCCc
Q 016982           81 WNQEGS--------EWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSK----LIR--KRHDS  145 (379)
Q Consensus        81 w~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~--~~~~~  145 (379)
                      +|+...        -.........|...|..++-.|++ +.+.++++||+++-+|++.........    .+.  ....-
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            999742        112223335678889999999988 889999999999999998754211111    000  11123


Q ss_pred             CEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cC-----------CcceEEEEE
Q 016982          146 SVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LS-----------FSWAFGVKW  212 (379)
Q Consensus       146 ~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~~v~~~~~  212 (379)
                      ...++..+|.. .+|++|+.|...++||.+..-..++..............++.-+. +|           ...++.+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            56789999965 789999999999999953221111111110000011112222221 11           112678999


Q ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982          213 SPSGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       213 sp~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +|+|.-|+..-..-.|+++|+...+..
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            999988877666678999998765543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=5.2e-19  Score=149.58  Aligned_cols=217  Identities=11%  Similarity=0.182  Sum_probs=156.0

Q ss_pred             cCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCc-----eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEE
Q 016982            9 FAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEK-----WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVW   81 (379)
Q Consensus         9 ~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw   81 (379)
                      ....|+.+.|+| |..+||+++.||.|++|.+..+.     ..+...+..|...|+++.|+|-. +.|++++.|.+|++|
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            357899999999 77899999999999999997542     34567788999999999999964 789999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      |+.+......+  .+|...|..++|+|+|+.+++.+.||+|++|+.+.++..  ...-...-...-..+.|.-+|+++++
T Consensus       706 Dl~~~~~~~~l--~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p--v~Eg~gpvgtRgARi~wacdgr~viv  781 (1012)
T KOG1445|consen  706 DLANAKLYSRL--VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP--VYEGKGPVGTRGARILWACDGRIVIV  781 (1012)
T ss_pred             ehhhhhhhhee--ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc--cccCCCCccCcceeEEEEecCcEEEE
Confidence            99998855555  789999999999999999999999999999988776521  10000011122346778889998888


Q ss_pred             eeCC----CeEEEEeccccccccccccCCCccCCcccceEEEe--ecCCcceEEEEECCCCC-EEEEEcCCCeEEEEECC
Q 016982          162 TSTD----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGN-TLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       162 ~~~d----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~v~d~~  234 (379)
                      .+.|    ..|.+||...                -....+.+.  .... .+.-..+.+|.+ ++++|-.|..|.+|.+-
T Consensus       782 ~Gfdk~SeRQv~~Y~Aq~----------------l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  782 VGFDKSSERQVQMYDAQT----------------LDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             ecccccchhhhhhhhhhh----------------ccCCcceeeeecccC-ccccccccCCCceEEEecCCCceEEEEEec
Confidence            7765    4578887510                111222221  1111 112234455555 45677789999999987


Q ss_pred             CCCceeeeeeee
Q 016982          235 GPSPLAQNVAFR  246 (379)
Q Consensus       235 ~~~~~~~~~~~~  246 (379)
                      -..+.+..+..+
T Consensus       845 ~esPy~lpl~~f  856 (1012)
T KOG1445|consen  845 YESPYLLPLAPF  856 (1012)
T ss_pred             CCCceeeecccc
Confidence            665554444444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=7.6e-19  Score=137.64  Aligned_cols=227  Identities=11%  Similarity=0.089  Sum_probs=160.5

Q ss_pred             ceeccCcceeEEEeCC--CCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEe----CCCe
Q 016982            5 AVHQFAQCITCHAWSP--DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVS----HDRN   77 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~----~d~~   77 (379)
                      .+.++...+..++|..  ....+.+|+.||+|++||++............++ .+..+++..-.++.+++|.    .+-.
T Consensus        65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~  144 (376)
T KOG1188|consen   65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDAS  144 (376)
T ss_pred             eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceE
Confidence            4567788888999976  4578899999999999999876434455555565 5677888776778888875    4567


Q ss_pred             EEEEeccCCce-eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           78 SYVWNQEGSEW-VPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        78 i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      |.+||++..+. +..+ ...|...|+++.|+| +.++|++|+.||.|.+||++........... ..+...|.++.|..+
T Consensus       145 v~lwDvR~~qq~l~~~-~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~  222 (376)
T KOG1188|consen  145 VVLWDVRSEQQLLRQL-NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSK  222 (376)
T ss_pred             EEEEEeccccchhhhh-hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh-hcccceeeeeeeecC
Confidence            99999998765 3333 357999999999999 6789999999999999999876532222222 467778999999987


Q ss_pred             C-cEEEEeeCCCeEEEEeccccccccccccCCCc-------------------------------------------cCC
Q 016982          156 N-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTS-------------------------------------------SDT  191 (379)
Q Consensus       156 ~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-------------------------------------------~~~  191 (379)
                      + +.+.+-+......+|++....-+.+.+.+...                                           ...
T Consensus       223 ~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~  302 (376)
T KOG1188|consen  223 KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG  302 (376)
T ss_pred             CcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccc
Confidence            7 56888888999999998632211111111000                                           000


Q ss_pred             cccceEEEeec-CCcceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          192 KFGEQILQLDL-SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       192 ~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                      ...+.+..+.+ |..-|+++.|...+..+.+|++||.+.+|..
T Consensus       303 ~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  303 SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            11112222333 3345677778778889999999999999975

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=9.1e-18  Score=134.21  Aligned_cols=260  Identities=11%  Similarity=0.097  Sum_probs=177.7

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe
Q 016982           48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT  121 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  121 (379)
                      ..+.+|.+.|+++.|+.++++|++|+.|..+++|+++..      +++... -..|...|.|++|.....++++|..+++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEccCCeeEecCCCcce
Confidence            345679999999999999999999999999999998642      322222 2346689999999999999999999999


Q ss_pred             EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      |...|+++.+...+...  ....+.|+.+..+|..+.|++.+.++.|.+||.+.     ++         ..+.++ ...
T Consensus       129 VI~HDiEt~qsi~V~~~--~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd-----~~---------~~~~~~-~~A  191 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANE--NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD-----RQ---------NPISLV-LPA  191 (609)
T ss_pred             eEeeecccceeeeeecc--cCcccceeecccCCCCceEEEEecCceEEEEeccC-----CC---------CCCcee-eec
Confidence            99999999874222111  23345999999999999999999999999999731     10         011222 122


Q ss_pred             cCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeee------eeeecCCeeeEEEecCCcEEEE-EeCCCeEEE
Q 016982          202 LSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQN------VAFRDLPLRDVLFVSEKMVIGV-GFDCNPMVF  273 (379)
Q Consensus       202 ~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~-~~d~~~~i~  273 (379)
                      .......++.|+|. -.+|++++..+.+-+||.+.....+..      ++.....-.++.|+|+|..+.+ -......+|
T Consensus       192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~  271 (609)
T KOG4227|consen  192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYF  271 (609)
T ss_pred             CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEe
Confidence            23455778899995 567788888899999999876543221      1111223367899999876553 333445555


Q ss_pred             EecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccce
Q 016982          274 AADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITR  353 (379)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  353 (379)
                      ++-...+.-+..  +..                        ..|             -.....+.+++ |-.+     ..
T Consensus       272 D~~S~R~~V~k~--D~N------------------------~~G-------------Y~N~~T~KS~~-F~~D-----~~  306 (609)
T KOG4227|consen  272 DFISQRCFVLKS--DHN------------------------PNG-------------YCNIKTIKSMT-FIDD-----YT  306 (609)
T ss_pred             eeecccceeEec--cCC------------------------CCc-------------ceeeeeeeeee-eecc-----ee
Confidence            544332221110  000                        000             01234567777 5444     46


Q ss_pred             EEEeecCceEEEEeCCC
Q 016982          354 FTTSGLDGKIVTWDLES  370 (379)
Q Consensus       354 l~t~~~Dg~v~iW~~~~  370 (379)
                      ++||++|-.|.+|.+..
T Consensus       307 v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  307 VATGSDHWGIHIWKLPR  323 (609)
T ss_pred             eeccCcccceEEEecCC
Confidence            99999999999999975

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=4.7e-17  Score=142.27  Aligned_cols=220  Identities=15%  Similarity=0.181  Sum_probs=149.6

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCC--eE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDR--NS   78 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i   78 (379)
                      .+..+...+.+.+|||||+.|+..+.   +..|++|++.+++.+.+..+.++   +..++|+|||+.|+.. +.++  .|
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I  269 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGSLNL  269 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEE
Confidence            34556678999999999999987643   45799999988754444444443   4568999999988765 3344  58


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-CeEEEEEe--ecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-KTVCICYY--EQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~i~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      .+||+.+++....   ..+...+....|+|||+.|+..+.+ +...+|.+  ..+.    .+.+ ...........|+||
T Consensus       270 ~~~d~~tg~~~~l---t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~l-t~~~~~~~~~~~SpD  341 (429)
T PRK03629        270 YVMDLASGQIRQV---TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRI-TWEGSQNQDADVSSD  341 (429)
T ss_pred             EEEECCCCCEEEc---cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEe-ecCCCCccCEEECCC
Confidence            8999988864332   3344567889999999988877753 45556644  4443    2333 233445567899999


Q ss_pred             CcEEEEeeCC---CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCe---EE
Q 016982          156 NVFLATTSTD---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM---IY  229 (379)
Q Consensus       156 ~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~---i~  229 (379)
                      |++|+..+.+   ..|.+||+                  .+++ ...+.. ........|+|||++|+.++.++.   +.
T Consensus       342 G~~Ia~~~~~~g~~~I~~~dl------------------~~g~-~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~  401 (429)
T PRK03629        342 GKFMVMVSSNGGQQHIAKQDL------------------ATGG-VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLN  401 (429)
T ss_pred             CCEEEEEEccCCCceEEEEEC------------------CCCC-eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence            9998876543   35777876                  2232 222322 112346789999999998887653   67


Q ss_pred             EEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          230 FVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       230 v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                      ++++....  .+.+..+...+...+|+|
T Consensus       402 ~~~~~G~~--~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        402 LVSTDGRF--KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEECCCCC--eEECccCCCCcCCcccCC
Confidence            77875433  355666777888999987

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=4.6e-17  Score=145.43  Aligned_cols=297  Identities=14%  Similarity=0.174  Sum_probs=202.0

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccC---CCceEEEEEcC--CCCEEEEEeCCCeEEEEeccC
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH---DQIVSGIDWSV--RSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      .+...+.|+|-...++++...-.|++||.+.+  +.+..+..+   ...|+.+.+-.  |..++++|+.||.|+||+--.
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            35667889998889999887789999999887  555555443   34688888753  346889999999999997432


Q ss_pred             C-----ceeeeEE-e----ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-
Q 016982           86 S-----EWVPTLV-I----LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-  154 (379)
Q Consensus        86 ~-----~~~~~~~-~----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-  154 (379)
                      .     +.+.... +    ....+.-.-+.|......|++++.-..|+|||.....   +..-+..+....++++.-+- 
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ---VVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce---eEeecccCCCccceeeccccc
Confidence            2     1111110 0    0011112445777766677777778899999998876   34444345555666665443 


Q ss_pred             CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc--eEEEEECCCCCE-EEEEcCCCeEEEE
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW--AFGVKWSPSGNT-LAYVGHNSMIYFV  231 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~-l~~~~~d~~i~v~  231 (379)
                      .|+.+++|..||.|++||.+       ..        .....+.....|+..  |..+.+.+.|-- |++|+.+|.|++|
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R-------~a--------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRR-------MA--------PPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred             CCceEEEeecCCceEEeecc-------cC--------CccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence            36999999999999999862       11        112345556677766  999999997655 9999999999999


Q ss_pred             ECCCC-Cceeeeeeee---cCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccccc
Q 016982          232 DDVGP-SPLAQNVAFR---DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAF  307 (379)
Q Consensus       232 d~~~~-~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (379)
                      |++.. ++....+..|   ++..+++..++...++|+|+.+.+.||+..+... ...+..                    
T Consensus      1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n-------------------- 1343 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYN-------------------- 1343 (1387)
T ss_pred             ecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccC--------------------
Confidence            99984 2221222222   2358999999999999988889999999876542 111100                    


Q ss_pred             ceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982          308 GKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                      ..|.                   .--.+.+.|++|+ |..    .++|.|+.|.+|.||......
T Consensus      1344 ~~F~-------------------~q~~gs~scL~FH-P~~----~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1344 PGFM-------------------GQRIGSVSCLAFH-PHR----LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             cccc-------------------cCcCCCcceeeec-chh----HhhhhccCCceEEEeecCCcC
Confidence            1111                   1123456899955 332    689999999999999887643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=142.07  Aligned_cols=279  Identities=13%  Similarity=0.115  Sum_probs=194.1

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTV  122 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v  122 (379)
                      .....|..|.+.|+.+.|+..|..|++++.|..|.+||...+..+..+. .+|...|....|-|  +...+++++.||.+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-cccccchhhhhccCCCCCcCceeccccCce
Confidence            4556788899999999999999999999999999999999988666654 57888888888888  34678999999999


Q ss_pred             EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      ++=.+.......-.+.+ ..|.++|..++.-|+. +-|.+++.|+.+.-+|++       ...+        ......-.
T Consensus       212 r~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr-------~~~p--------a~~~~cr~  275 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR-------QDVP--------AEKFVCRE  275 (559)
T ss_pred             eeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeeec-------cCCc--------cceeeeec
Confidence            98666544432223344 7899999999999976 678899999999988862       1110        11111222


Q ss_pred             cCCc---ceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCc-----eeeeeee------ecCCeeeEEEecC-CcEEEEE
Q 016982          202 LSFS---WAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSP-----LAQNVAF------RDLPLRDVLFVSE-KMVIGVG  265 (379)
Q Consensus       202 ~~~~---~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~------~~~~i~~~~~s~~-~~~l~~~  265 (379)
                      .+..   ....++..|. ...+++++.|..+++||.+.-..     .+..+..      ..-.|++++|+.+ +.+|++-
T Consensus       276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY  355 (559)
T KOG1334|consen  276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY  355 (559)
T ss_pred             cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence            2222   4678899995 44789999999999999765321     1112211      1235899999965 5677777


Q ss_pred             eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc--ceeeeeee
Q 016982          266 FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN--CINCIVPL  343 (379)
Q Consensus       266 ~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~  343 (379)
                      .|..|++|..+-.    ....+...   ...       .....+                   .++||.+  .|.++-||
T Consensus       356 nDe~IYLF~~~~~----~G~~p~~~---s~~-------~~~~k~-------------------vYKGHrN~~TVKgVNFf  402 (559)
T KOG1334|consen  356 NDEDIYLFNKSMG----DGSEPDPS---SPR-------EQYVKR-------------------VYKGHRNSRTVKGVNFF  402 (559)
T ss_pred             cccceEEeccccc----cCCCCCCC---cch-------hhccch-------------------hhcccccccccceeeec
Confidence            8888888842211    00000000   000       001111                   2478854  58888888


Q ss_pred             cccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          344 REAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       344 ~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      .|.    ..|+++||+-|.|.||+-++++.++.+
T Consensus       403 GPr----sEyVvSGSDCGhIFiW~K~t~eii~~M  432 (559)
T KOG1334|consen  403 GPR----SEYVVSGSDCGHIFIWDKKTGEIIRFM  432 (559)
T ss_pred             cCc----cceEEecCccceEEEEecchhHHHHHh
Confidence            654    489999999999999999999887654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.80  E-value=2.3e-17  Score=136.93  Aligned_cols=222  Identities=15%  Similarity=0.176  Sum_probs=150.3

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCc--eEEE--EEeccCCCceEEEEE-----cCCCCEEEEEeCCCeEEEEec
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK--WEKL--HVLQKHDQIVSGIDW-----SVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~--~~~~--~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ++...++-.|.+|+..-. ..+++|+...+.  ..++  ..+.+-  ...|-+|     .|.+--++.+-.-|.+.+.|.
T Consensus       126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp  202 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP  202 (636)
T ss_pred             eeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEecc
Confidence            444455556677766533 478888887431  1111  112211  1223333     345656777777788988887


Q ss_pred             cCCceeeeEEee--cCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCc--------------eeEEE---------
Q 016982           84 EGSEWVPTLVIL--RLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENN--------------WWVSK---------  137 (379)
Q Consensus        84 ~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~--------------~~~~~---------  137 (379)
                      ...+....+...  -.+..|+++.|-| +...++++-.+|.+++||.+....              ..+..         
T Consensus       203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNP  282 (636)
T KOG2394|consen  203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNP  282 (636)
T ss_pred             hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCc
Confidence            654322222111  1347899999999 445677777799999997643210              00000         


Q ss_pred             --EEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC
Q 016982          138 --LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS  215 (379)
Q Consensus       138 --~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  215 (379)
                        .. .-..+.|...+|+|||++||+.+.||.++|||.                  .+.+.+..+...-+...|++||||
T Consensus       283 v~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~f------------------dt~eLlg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  283 VARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDF------------------DTQELLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             ccee-EeccccccceeEcCCCceEEEEecCceEEEeec------------------cHHHHHHHHHhhccceEEEEEcCC
Confidence              00 112447889999999999999999999999996                  444555555555677999999999


Q ss_pred             CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                      |+|+++|++|.-|.||.+...+ ++..-++|...|..|+|.|
T Consensus       344 GKyIvtGGEDDLVtVwSf~erR-VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEERR-VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ccEEEecCCcceEEEEEeccce-EEEeccccccceeeEeecc
Confidence            9999999999999999988765 6688889999999999987

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.80  E-value=7.1e-17  Score=140.85  Aligned_cols=278  Identities=11%  Similarity=0.042  Sum_probs=185.1

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCcee--e--eEEeecCCCceeEEEE
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWV--P--TLVILRLNRAALCVQW  106 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~--~--~~~~~~~~~~v~~~~~  106 (379)
                      +.+.+|++... ..+...+. ....|.++.|+|.. ++++.|..+|+|.+||+..+...  .  ......|..++..+.|
T Consensus       222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             ceEEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            47999999876 34555554 35689999999965 67788889999999999887642  1  1222457889999999


Q ss_pred             CCCC--CEEEEEeCCCeEEEEEeecCCceeE---EEEEe-----ecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccc
Q 016982          107 SPKE--NKFAVGSGAKTVCICYYEQENNWWV---SKLIR-----KRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFI  175 (379)
Q Consensus       107 ~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~---~~~~~-----~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~  175 (379)
                      -.+.  .-+++++.||.|..|+++.......   .....     ......+++++|.+.. +.++.|+++|.|.--+-. 
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~-  378 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK-  378 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc-
Confidence            7643  4599999999999998875432000   00000     1223467899998854 789999999998764321 


Q ss_pred             cccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEE
Q 016982          176 KGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLF  255 (379)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~  255 (379)
                         ..+....      ...+.+..+..|.++|..+.++|=+..++..+.|.+++||........+..+..+...+++++|
T Consensus       379 ---g~~~~~~------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW  449 (555)
T KOG1587|consen  379 ---GYTPAPE------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAW  449 (555)
T ss_pred             ---CCccccc------ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEE
Confidence               1110000      1113344566788999999999976655555559999999876233233555556667999999


Q ss_pred             ecCCc-EEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccc
Q 016982          256 VSEKM-VIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTH  333 (379)
Q Consensus       256 s~~~~-~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  333 (379)
                      ||... +++ +..+|.+.+|++.....--+.                                            ...-+
T Consensus       450 SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~--------------------------------------------s~~~~  485 (555)
T KOG1587|consen  450 SPTRPAVFATVDGDGNLDIWDLLQDDEEPVL--------------------------------------------SQKVC  485 (555)
T ss_pred             cCcCceEEEEEcCCCceehhhhhccccCCcc--------------------------------------------ccccc
Confidence            99754 333 556889998876542200000                                            00112


Q ss_pred             ccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          334 VNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       334 ~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                       ..+.....+++.+    +.|+.|...|.+.+|++..
T Consensus       486 -~~~l~~~~~s~~g----~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  486 -SPALTRVRWSPNG----KLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             -ccccceeecCCCC----cEEEEecCCCcEEEEEcCc
Confidence             2333333377665    8999999999999999964

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=5.5e-18  Score=132.41  Aligned_cols=235  Identities=18%  Similarity=0.204  Sum_probs=159.6

Q ss_pred             CcccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEE
Q 016982            1 MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSY   79 (379)
Q Consensus         1 m~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~   79 (379)
                      |.-.+++...++  -++|||+|+++|++++- .+.|-|..+-  +..+.+ ..-+.|.-+.|..|..++ .....++.|.
T Consensus         1 M~Fte~fk~~~~--~c~fSp~g~yiAs~~~y-rlviRd~~tl--q~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vq   74 (447)
T KOG4497|consen    1 MDFTELFKSLNP--FCSFSPCGNYIASLSRY-RLVIRDSETL--QLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQ   74 (447)
T ss_pred             CChHHHHHhcCC--ceeECCCCCeeeeeeee-EEEEeccchh--hHHHHH-HHHHHhhheeeeccceeeeeeeeccceEE
Confidence            333444444454  46899999999999764 7777776653  222222 224567889999888665 4556888999


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEE-EeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAV-GSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      +|++...++...+  .....++..++|+|||+.++. ...+-.|.+|.+.+..    ...+ .-....+..++|+|||++
T Consensus        75 vwsl~Qpew~ckI--deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~-~~pK~~~kg~~f~~dg~f  147 (447)
T KOG4497|consen   75 VWSLVQPEWYCKI--DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLL-PHPKTNVKGYAFHPDGQF  147 (447)
T ss_pred             EEEeecceeEEEe--ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEe-cccccCceeEEECCCCce
Confidence            9999999877766  567789999999999965554 5558899999999876    3333 333455689999999999


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      .+..++-.....+.+..               .+....+..+....-..+.+.|+|||..|++         ||-.-...
T Consensus       148 ~ai~sRrDCkdyv~i~~---------------c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leyk  203 (447)
T KOG4497|consen  148 CAILSRRDCKDYVQISS---------------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYK  203 (447)
T ss_pred             eeeeecccHHHHHHHHh---------------hHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhhe
Confidence            88887643222221100               1233445555555666889999999998874         54221111


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      +  .....+..+..++|+|.+++|+ +++|+.+++.+
T Consensus       204 v--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  204 V--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             e--eeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence            0  1122245688899999999999 66888888755

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=4.3e-16  Score=136.30  Aligned_cols=206  Identities=15%  Similarity=0.118  Sum_probs=136.7

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe---CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS---HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      .|.++|.+..+.   +.+..+...+.+.+|+|||+.|+..+   .+..+.+|++.+++.....   ...+.+..+.|+||
T Consensus       180 ~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~---~~~~~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA---SFPRHNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCCC---EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc---CCCCCcCCeEECCC
Confidence            788888876532   33344567899999999999988754   2357999999888643322   23344567899999


Q ss_pred             CCEEEEE-eCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccC
Q 016982          110 ENKFAVG-SGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       110 ~~~l~~~-~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~  185 (379)
                      |+.|+.. +.++  .|++||++++.    .+.+ ..+...+....|+|||+.|+..+. ++...||.+.           
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~----~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d-----------  317 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQ----IRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN-----------  317 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCC----EEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEE-----------
Confidence            9988865 3344  48888887765    2333 344456788999999998887765 3455565431           


Q ss_pred             CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE
Q 016982          186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI  262 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  262 (379)
                           ...+ ....+.........+.|+|||++|+..+.+   ..|.+||+.++..  ..+.. ........|+|||++|
T Consensus       318 -----~~~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt~-~~~~~~p~~SpDG~~i  388 (429)
T PRK03629        318 -----INGG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLTD-TFLDETPSIAPNGTMV  388 (429)
T ss_pred             -----CCCC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEeCC-CCCCCCceECCCCCEE
Confidence                 0222 223333333445678999999998876543   3688899887652  33332 2234578999999988


Q ss_pred             E-EEeCCC
Q 016982          263 G-VGFDCN  269 (379)
Q Consensus       263 ~-~~~d~~  269 (379)
                      + ++.++.
T Consensus       389 ~~~s~~~~  396 (429)
T PRK03629        389 IYSSSQGM  396 (429)
T ss_pred             EEEEcCCC
Confidence            8 444443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.3e-16  Score=124.96  Aligned_cols=233  Identities=13%  Similarity=0.150  Sum_probs=162.2

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCCc
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      +..+..++|++.-..+|++..|-.|++|+-+..   ....++. ....|++++|-|.+ ..|+.|... -|.+|.....-
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl  173 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL  173 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence            346788999997778899999999999998764   3333432 24579999999976 567777765 48999764321


Q ss_pred             ------------eeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           88 ------------WVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        88 ------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                                  ....+...+ ..+|+++.|++||..+++++. |..|.|||.+++..    ..+.....+.+.-+.|+|
T Consensus       174 n~~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~----~pL~~~glgg~slLkwSP  248 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK----IPLIPKGLGGFSLLKWSP  248 (445)
T ss_pred             ccccccccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc----ccccccCCCceeeEEEcC
Confidence                        111222222 368999999999999999886 67899999999873    223134557788999999


Q ss_pred             CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      |+.+|..++-|+..++|+.                 .++........+ .+.|....|+|+|++|+.+.. |.-++|.+.
T Consensus       249 dgd~lfaAt~davfrlw~e-----------------~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~  309 (445)
T KOG2139|consen  249 DGDVLFAATCDAVFRLWQE-----------------NQSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLT  309 (445)
T ss_pred             CCCEEEEecccceeeeehh-----------------cccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence            9999999999999999964                 133333333333 458999999999998776542 333444332


Q ss_pred             CCCc--------------eeeee------ee---ecCCeeeEEEecCCcEEEEEeCCCe
Q 016982          235 GPSP--------------LAQNV------AF---RDLPLRDVLFVSEKMVIGVGFDCNP  270 (379)
Q Consensus       235 ~~~~--------------~~~~~------~~---~~~~i~~~~~s~~~~~l~~~~d~~~  270 (379)
                      -..+              ++..+      .+   -.+++.+++|.|.|.+||+...+.-
T Consensus       310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            1110              00000      01   1456889999999999998776654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=2.1e-18  Score=140.50  Aligned_cols=232  Identities=9%  Similarity=0.108  Sum_probs=187.6

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      ..+.+.++.+|+.|+.|+..|.|-.+|..+.  .....+. -...|.++.|..+.+++|++- ...++|||-..-+.-+.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~--~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHCl  206 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK--KLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCL  206 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccc--eeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeeh
Confidence            4567899999999999999999999999997  4444443 245788999998888888765 46899999765543222


Q ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982           92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF  171 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~  171 (379)
                          ....+|..+.|-|..-+|++++..|.++.-|+.+++   +...+ ..-.+.+..++-+|-+..+-+|..+|+|.+|
T Consensus       207 ----k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk---lVa~~-~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  207 ----KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK---LVASI-RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW  278 (545)
T ss_pred             ----hhcCchhhhcccchhheeeecccCCceEEEeechhh---hhHHH-HccCCccchhhcCCccceEEEcCCCceEEec
Confidence                234688999999999999999999999999999987   34444 4456778888899999999999999999999


Q ss_pred             eccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCee
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLR  251 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~  251 (379)
                      ..                  ...+++..+-.|.++|.++++.++|+|+++++.|..++|||+++-.++ .++.. ..+..
T Consensus       279 SP------------------~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-~t~~t-p~~a~  338 (545)
T KOG1272|consen  279 SP------------------NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-HTYRT-PHPAS  338 (545)
T ss_pred             CC------------------CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc-ceeec-CCCcc
Confidence            85                  667778888899999999999999999999999999999999987755 33332 45667


Q ss_pred             eEEEecCCcEEEEEeCCCeEEEEec
Q 016982          252 DVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       252 ~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      .+++|.. .+||++....+.+|...
T Consensus       339 ~ls~Sqk-glLA~~~G~~v~iw~d~  362 (545)
T KOG1272|consen  339 NLSLSQK-GLLALSYGDHVQIWKDA  362 (545)
T ss_pred             ccccccc-cceeeecCCeeeeehhh
Confidence            7888764 46778888889998743

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=3.3e-16  Score=137.17  Aligned_cols=205  Identities=15%  Similarity=0.164  Sum_probs=135.5

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECC
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP  108 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  108 (379)
                      ..|.++|....   ....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++....   ....+.+...+|+|
T Consensus       176 ~~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---~~~~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDADGQ---NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---ANFKGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCCCC---CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---ecCCCCccceEECC
Confidence            35777776543   333445667789999999999999877643   3599999998874332   23345667899999


Q ss_pred             CCCEEEE-EeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCC
Q 016982          109 KENKFAV-GSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEG  186 (379)
Q Consensus       109 ~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~  186 (379)
                      ||+.|+. .+.++...+|.++....  ..+.+ ..+........|+|||+.|+..+. ++...+|.+.            
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~--~~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~------------  314 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGS--GLRRL-TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP------------  314 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCC--CcEEC-CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE------------
Confidence            9998875 56688877777654321  12333 345555667899999998886654 4667777651            


Q ss_pred             CccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982          187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                          ...+. ...+..........+|+|+|++|+..+.++   .|.+||+.++..  ..+.. ......+.|+|||+.|+
T Consensus       315 ----~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~-~~~~~~p~~spdg~~l~  386 (427)
T PRK02889        315 ----ASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV--TALTD-TTRDESPSFAPNGRYIL  386 (427)
T ss_pred             ----CCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe--EEccC-CCCccCceECCCCCEEE
Confidence                01121 222222223344689999999998776544   699999887653  23332 23346789999999887


Q ss_pred             EE
Q 016982          264 VG  265 (379)
Q Consensus       264 ~~  265 (379)
                      ..
T Consensus       387 ~~  388 (427)
T PRK02889        387 YA  388 (427)
T ss_pred             EE
Confidence            43

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.4e-16  Score=117.42  Aligned_cols=200  Identities=8%  Similarity=-0.002  Sum_probs=147.3

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCC--------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS--------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                      .|.+-+|+|.+++|+.|..+|.|.+..+.+-        ...+.+...+|.++++.++|+  ..+|++++ ||.|+-|.+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            4566789999999999999999999987532        112334447899999999998  44667766 599999988


Q ss_pred             ecCCc-------eeEEEEEee--cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE
Q 016982          128 EQENN-------WWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL  198 (379)
Q Consensus       128 ~~~~~-------~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
                      +....       |....+...  ..-..|+++-..|..+-+++++.|+.++-||+                  ++++..+
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl------------------E~G~i~r  150 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL------------------EDGRIQR  150 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe------------------cCCEEEE
Confidence            65432       111111100  11236789999998888888889999999997                  8899999


Q ss_pred             EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec----------CCeeeEEEecCCcEEEEEeCC
Q 016982          199 QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD----------LPLRDVLFVSEKMVIGVGFDC  268 (379)
Q Consensus       199 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~d~  268 (379)
                      ++++|...+.++.--.....+++|++||++++||.++.+.. +.+....          ..|.++  .-+..++++|..-
T Consensus       151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgGp  227 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGGP  227 (325)
T ss_pred             EEcCCcceeeeeeecccCcceeecCCCccEEEEecccccee-EEeccccChhhcCcccCceeEEE--eccCceEEecCCC
Confidence            99999999999998555556889999999999999987643 4443211          123333  3466788998888


Q ss_pred             CeEEEEecCCC
Q 016982          269 NPMVFAADETG  279 (379)
Q Consensus       269 ~~~i~~~~~~~  279 (379)
                      .+.+|.+....
T Consensus       228 ~lslwhLrsse  238 (325)
T KOG0649|consen  228 KLSLWHLRSSE  238 (325)
T ss_pred             ceeEEeccCCC
Confidence            99999877654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=2.6e-16  Score=138.34  Aligned_cols=220  Identities=16%  Similarity=0.206  Sum_probs=146.6

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCC--eE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDR--NS   78 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i   78 (379)
                      .+..+...+.+.+|+|||+.|++.+.   +..|++|++.+++...+..   ..+...+++|+|+|+.|+ +.+.++  .|
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~---~~g~~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS---FRGINGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc---CCCCccCceECCCCCEEEEEEeCCCCceE
Confidence            45667778999999999999998764   3469999998874333333   334455789999998775 445555  59


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCe--EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKT--VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      ++||+.+++....   ..+.......+|+|||+.|+..+. ++.  |+++++..+.    .+.+ ..+......++|+|+
T Consensus       275 y~~d~~~g~~~~l---t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~----~~~l-t~~g~~~~~~~~SpD  346 (433)
T PRK04922        275 YVMDLGSRQLTRL---TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS----AERL-TFQGNYNARASVSPD  346 (433)
T ss_pred             EEEECCCCCeEEC---ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----eEEe-ecCCCCccCEEECCC
Confidence            9999988874332   334445577899999998887764 455  4444544444    2223 223334457899999


Q ss_pred             CcEEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEE
Q 016982          156 NVFLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIY  229 (379)
Q Consensus       156 ~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~  229 (379)
                      |++++..+.++   .|.+||+                  ..++.. .+.. ......+.|+|||++++..+.+   ..|.
T Consensus       347 G~~Ia~~~~~~~~~~I~v~d~------------------~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~  406 (433)
T PRK04922        347 GKKIAMVHGSGGQYRIAVMDL------------------STGSVR-TLTP-GSLDESPSFAPNGSMVLYATREGGRGVLA  406 (433)
T ss_pred             CCEEEEEECCCCceeEEEEEC------------------CCCCeE-ECCC-CCCCCCceECCCCCEEEEEEecCCceEEE
Confidence            99988765433   5889986                  233322 3322 2234567999999988876643   4688


Q ss_pred             EEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          230 FVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       230 v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                      ++++....  .+.+..+.+.+..++|+|
T Consensus       407 ~~~~~g~~--~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        407 AVSTDGRV--RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             EEECCCCc--eEEcccCCCCCCCCccCC
Confidence            88875533  344544556677888876

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.77  E-value=9e-16  Score=121.90  Aligned_cols=194  Identities=14%  Similarity=0.226  Sum_probs=146.5

Q ss_pred             ceeEEEeCCCCcEEEEEecC--CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           12 CITCHAWSPDHAMVAFCPNN--NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      .|-.+-|+.  .++|..+.+  ..+++++.+.+.  .+..+. ...+|.++.++.  ++|+++-.+ .|+|||+.+.+..
T Consensus        48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~--~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklL  119 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKT--TICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLL  119 (391)
T ss_pred             EEEEeeccc--ceeEEEecCCCceEEEEEcccCc--eEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceee
Confidence            344455554  344444432  457888877652  332222 345788998874  467666654 4999999999887


Q ss_pred             eeEEee-cCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982           90 PTLVIL-RLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus        90 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                      ..+... .+...+.++++++.+.+++.-+.  .|.|.+||..+-+   ....+ ..|.+.+.+++|+++|.+|||+++.|
T Consensus       120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~---~v~~I-~aH~~~lAalafs~~G~llATASeKG  195 (391)
T KOG2110|consen  120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ---PVNTI-NAHKGPLAALAFSPDGTLLATASEKG  195 (391)
T ss_pred             hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce---eeeEE-EecCCceeEEEECCCCCEEEEeccCc
Confidence            777655 45566888888888888887543  6899999998877   35556 79999999999999999999999998


Q ss_pred             e-EEEEeccccccccccccCCCccCCcccceEEEeecCC--cceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          167 K-CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF--SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       167 ~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      + |||+.+                  +.++.+.+|+-..  ..|.+++|+|++++|++.+..++|++|.+..
T Consensus       196 TVIRVf~v------------------~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  196 TVIRVFSV------------------PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             eEEEEEEc------------------CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence            7 789987                  7788888886432  3588999999999999999999999998754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=4.9e-16  Score=136.79  Aligned_cols=219  Identities=15%  Similarity=0.216  Sum_probs=148.5

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCCe--E
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDRN--S   78 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i   78 (379)
                      .+..|...+.+.+|+|||+.|+..+.   +..|++||+.+++.+   .+..+.+.+...+|+|||+.|+ +.+.++.  |
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            35667889999999999999988764   468999999887433   3444556778899999998875 4455554  7


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      .+||+.+++...   +..+........|+|||+.|+..+. ++  .|+++|+..+.    .+.+ ..+...+....|+|+
T Consensus       273 y~~d~~~~~~~~---Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~l-t~~~~~~~~~~~Spd  344 (435)
T PRK05137        273 YTMDLRSGTTTR---LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRI-SFGGGRYSTPVWSPR  344 (435)
T ss_pred             EEEECCCCceEE---ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEe-ecCCCcccCeEECCC
Confidence            778988876432   2345556678999999998888764 33  56676766554    2333 234455677899999


Q ss_pred             CcEEEEeeCC---CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC------C
Q 016982          156 NVFLATTSTD---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN------S  226 (379)
Q Consensus       156 ~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~  226 (379)
                      |++|+....+   ..|.+||+.                   +.....+.. ...+..+.|+|||+.|+..+.+      .
T Consensus       345 G~~ia~~~~~~~~~~i~~~d~~-------------------~~~~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~  404 (435)
T PRK05137        345 GDLIAFTKQGGGQFSIGVMKPD-------------------GSGERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAP  404 (435)
T ss_pred             CCEEEEEEcCCCceEEEEEECC-------------------CCceEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence            9999877643   357777751                   112222222 2246678999999998775532      3


Q ss_pred             eEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                      .++++|+.+...  ..+. ....+...+|+|
T Consensus       405 ~L~~~dl~g~~~--~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        405 KLYTVDLTGRNE--REVP-TPGDASDPAWSP  432 (435)
T ss_pred             eEEEEECCCCce--EEcc-CCCCccCcccCC
Confidence            688888866543  3443 244567778876

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.77  E-value=1.3e-15  Score=119.28  Aligned_cols=256  Identities=16%  Similarity=0.161  Sum_probs=163.3

Q ss_pred             CcceeEEEeCCCCcEEEE-EecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCc
Q 016982           10 AQCITCHAWSPDHAMVAF-CPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~   87 (379)
                      -+.|.-+.|..|.-+++. ...++.|.+|++...  +-...+.....++.++.|||||+.| .+...+-.|.+|.+.+.+
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~  125 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK  125 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecc--eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence            466778889888766654 456889999999987  4455666677899999999999654 566678899999999876


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeC------------------------------------CCeEEEEEeecCC
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSG------------------------------------AKTVCICYYEQEN  131 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------------------d~~v~i~~~~~~~  131 (379)
                      ....   .-.+..+..++|+|||++.+.++.                                    +..+-+||--..-
T Consensus       126 ~~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley  202 (447)
T KOG4497|consen  126 GYLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY  202 (447)
T ss_pred             eEEe---cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh
Confidence            3222   223456688999999998877763                                    2223334322211


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccc----------------------cc----------
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKG----------------------VD----------  179 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~----------------------~~----------  179 (379)
                           +.+.....-.+..++|+|.+++|+.|+.|+.+++.+-.+..                      .+          
T Consensus       203 -----kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL  277 (447)
T KOG4497|consen  203 -----KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL  277 (447)
T ss_pred             -----eeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence                 11112233568899999999999999999999886632100                      00          


Q ss_pred             -ccc---ccCCCcc------CCcccceEEE------eecCCcceEEEEECCCCCEEEEEcC--CCeEEEEECCCCCceee
Q 016982          180 -IKE---KKEGTSS------DTKFGEQILQ------LDLSFSWAFGVKWSPSGNTLAYVGH--NSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       180 -~~~---~~~~~~~------~~~~~~~~~~------~~~~~~~v~~~~~sp~~~~l~~~~~--d~~i~v~d~~~~~~~~~  241 (379)
                       +.+   +......      .......+..      +......+.-++|++|..++++-..  -+.+-+||++..+ + .
T Consensus       278 sf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-l-~  355 (447)
T KOG4497|consen  278 SFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-L-H  355 (447)
T ss_pred             ccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-h-h
Confidence             000   0000000      0000111111      1122335778999999999988643  3579999998765 2 2


Q ss_pred             eeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      .+-....+|....|.|....|+ +.....+++|....
T Consensus       356 avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg  392 (447)
T KOG4497|consen  356 AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG  392 (447)
T ss_pred             hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence            2333467899999999765444 55555677776544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=1.7e-15  Score=133.46  Aligned_cols=200  Identities=14%  Similarity=0.180  Sum_probs=138.4

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC---CCeEEEEeccCCceeeeEEeecCCCceeEEEECC
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH---DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP  108 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  108 (379)
                      ..|.++|..+.   ....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++...   +..+.+.+...+|+|
T Consensus       182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCCCC---CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEECC
Confidence            37888888664   33455667789999999999999888763   4679999999886432   234566778899999


Q ss_pred             CCCEEEE-EeCCCe--EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEecccccccccc
Q 016982          109 KENKFAV-GSGAKT--VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIKE  182 (379)
Q Consensus       109 ~~~~l~~-~~~d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~  182 (379)
                      ||+.|+. .+.++.  |++||+.++.    .+.+ ..+........|+|||+.|+..+. +|  .|.++|+         
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~----~~~L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~---------  321 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGT----TTRL-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA---------  321 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCc----eEEc-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC---------
Confidence            9998764 455555  6666766654    3334 455556678999999998887764 33  5667764         


Q ss_pred             ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCceeeeeeeecCCeeeEEEecCC
Q 016982          183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK  259 (379)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~  259 (379)
                               . +.....+..+...+..+.|+|+|++|+..+.+   ..|.+||+.+...  ..+. ....+..+.|+|||
T Consensus       322 ---------~-g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt-~~~~~~~p~~spDG  388 (435)
T PRK05137        322 ---------D-GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILT-SGFLVEGPTWAPNG  388 (435)
T ss_pred             ---------C-CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Eecc-CCCCCCCCeECCCC
Confidence                     2 22233343334556778999999999876543   3688889765432  3332 23356789999999


Q ss_pred             cEEEE
Q 016982          260 MVIGV  264 (379)
Q Consensus       260 ~~l~~  264 (379)
                      +.|+.
T Consensus       389 ~~i~~  393 (435)
T PRK05137        389 RVIMF  393 (435)
T ss_pred             CEEEE
Confidence            98873

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-15  Score=138.50  Aligned_cols=222  Identities=15%  Similarity=0.095  Sum_probs=153.6

Q ss_pred             EEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCC-----ceeeeEEeecCCCceeEEEECCCC
Q 016982           37 YKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGS-----EWVPTLVILRLNRAALCVQWSPKE  110 (379)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~  110 (379)
                      |+.++   ..+..+..|...+..++.++.. .++++|+.||+|++|+...-     ..............+.++...+.+
T Consensus      1034 W~p~G---~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred             CCccc---eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence            55443   6888888999999999988766 89999999999999998542     222333334467889999999999


Q ss_pred             CEEEEEeCCCeEEEEEeecCCc--ee--EEEEEeecCCcCEE-EEEEcCC-C-cEEEEeeCCCeEEEEeccccccccccc
Q 016982          111 NKFAVGSGAKTVCICYYEQENN--WW--VSKLIRKRHDSSVT-SVAWHPN-N-VFLATTSTDGKCRVFSTFIKGVDIKEK  183 (379)
Q Consensus       111 ~~l~~~~~d~~v~i~~~~~~~~--~~--~~~~~~~~~~~~v~-~~~~~p~-~-~~l~~~~~d~~i~v~d~~~~~~~~~~~  183 (379)
                      +.+|+++.||.|++.+++....  ..  ..+.......+.+. .-+|... + ..++.+...+.|..||+.         
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r--------- 1181 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR--------- 1181 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch---------
Confidence            9999999999999998876321  00  11111011223333 3333322 2 378888889999999973         


Q ss_pred             cCCCccCCcccceE--EEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecC---
Q 016982          184 KEGTSSDTKFGEQI--LQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE---  258 (379)
Q Consensus       184 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~---  258 (379)
                               .....  .......+.|++++.+|.+.+++.|...|.+.+||++-+.+....-.++..+++.+..+|-   
T Consensus      1182 ---------~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1182 ---------MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred             ---------hhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC
Confidence                     11111  1223346789999999999999999999999999998876543333345678888888773   


Q ss_pred             CcEEE-EE--eCCCeEEEEecCCC
Q 016982          259 KMVIG-VG--FDCNPMVFAADETG  279 (379)
Q Consensus       259 ~~~l~-~~--~d~~~~i~~~~~~~  279 (379)
                      ....+ ++  ..+.+.+|+...+.
T Consensus      1253 ~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             CceEEEecccCCCceeeeecccCc
Confidence            23444 33  45678888877653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.1e-15  Score=128.08  Aligned_cols=283  Identities=14%  Similarity=0.095  Sum_probs=194.7

Q ss_pred             eccCcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982            7 HQFAQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      +.|...-+.|..+|||+|+ |+|.+.-.|++||+.+-..+..+.+.  ...|.-.-.+.|-..++.-..|.+|.+...-.
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD--ae~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD--AEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc--ccceeEEEeccchhhheEeecCceeeehhhcC
Confidence            5678888999999999976 67778899999999874323222222  22444444555555666667788887765433


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ..  ...   .-+..-.+++++.-..-|++++....|+=++++.+.   ...++ ....+.++++..++-..+|++|+.+
T Consensus       126 ~h--y~~---RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr---fL~P~-~~~~~~lN~v~in~~hgLla~Gt~~  196 (703)
T KOG2321|consen  126 RH--YRT---RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR---FLNPF-ETDSGELNVVSINEEHGLLACGTED  196 (703)
T ss_pred             ee--eee---ecCcCCccccccCCCccEEEeecCcceEEEEccccc---ccccc-ccccccceeeeecCccceEEecccC
Confidence            22  111   123445667776544445555545567777777776   45555 4556889999999999999999999


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEe------ecCC-----cceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL------DLSF-----SWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      |.|..||.+                  ....+..+      ..|.     ..|+++.|+.+|-.+++|..+|.+.|||++
T Consensus       197 g~VEfwDpR------------------~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR  258 (703)
T KOG2321|consen  197 GVVEFWDPR------------------DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR  258 (703)
T ss_pred             ceEEEecch------------------hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence            999999963                  22222222      2222     249999999999999999999999999999


Q ss_pred             CCCceeeeeeeecCCeeeEEEecC--CcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeec
Q 016982          235 GPSPLAQNVAFRDLPLRDVLFVSE--KMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYG  312 (379)
Q Consensus       235 ~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (379)
                      ..++++..-.....+|..+.|.+.  +..|++.....++||+...+.....+.                           
T Consensus       259 a~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE---------------------------  311 (703)
T KOG2321|consen  259 ASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE---------------------------  311 (703)
T ss_pred             cCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc---------------------------
Confidence            988765554445678999999875  456777777788898866554333221                           


Q ss_pred             cccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          313 QSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                          ....++.+++++..     .+|.+|-+++.+..|=+..
T Consensus       312 --------------------pt~~lND~C~~p~s-----Gm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  312 --------------------PTSDLNDFCFVPGS-----GMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             --------------------ccCCcCceeeecCC-----ceEEEecCCCcceeEEccc
Confidence                                22347888866433     5888998888877776554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=6e-16  Score=135.54  Aligned_cols=223  Identities=18%  Similarity=0.209  Sum_probs=145.2

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCCeEEE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDRNSYV   80 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v   80 (379)
                      .+..+...+.+.+|+|||+.|++.+.+   ..|++||+.+++...+..   ..+.+.+.+|+|||+.|+ +.+.++...+
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~---~~g~~~~~~~SPDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN---FKGSNSAPAWSPDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec---CCCCccceEECCCCCEEEEEEccCCCceE
Confidence            345677889999999999999887643   469999998874333332   334556899999998886 4567777566


Q ss_pred             Ee--ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           81 WN--QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        81 w~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      |.  +.++.. .  .+..+........|+|||+.|+..+. ++...+|.++....  ..+.+ ..........+|+|+|+
T Consensus       267 y~~d~~~~~~-~--~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~l-t~~g~~~~~~~~SpDG~  340 (427)
T PRK02889        267 YTVNADGSGL-R--RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRV-TFTGSYNTSPRISPDGK  340 (427)
T ss_pred             EEEECCCCCc-E--ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEE-ecCCCCcCceEECCCCC
Confidence            54  444442 2  22334455677899999998887664 46677777654321  12222 12223344678999999


Q ss_pred             EEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEEEE
Q 016982          158 FLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFV  231 (379)
Q Consensus       158 ~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~  231 (379)
                      +|+..+.++   .|.+||+                  ..++. ..+... .....+.|+|||+.|+.++.++   .+.+.
T Consensus       341 ~Ia~~s~~~g~~~I~v~d~------------------~~g~~-~~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~  400 (427)
T PRK02889        341 LLAYISRVGGAFKLYVQDL------------------ATGQV-TALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAV  400 (427)
T ss_pred             EEEEEEccCCcEEEEEEEC------------------CCCCe-EEccCC-CCccCceECCCCCEEEEEEecCCCEEEEEE
Confidence            998776554   5889986                  23332 223221 2346789999999988876443   46666


Q ss_pred             ECCCCCceeeeeeeecCCeeeEEEecC
Q 016982          232 DDVGPSPLAQNVAFRDLPLRDVLFVSE  258 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~~~i~~~~~s~~  258 (379)
                      ++...  ....+..+.+.+...+|+|-
T Consensus       401 ~~~g~--~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        401 SSDGR--IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ECCCC--ceEEeecCCCCCCCCccCCC
Confidence            76432  23445555667788888873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=9.9e-16  Score=134.68  Aligned_cols=201  Identities=14%  Similarity=0.142  Sum_probs=135.0

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECC
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP  108 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  108 (379)
                      ..|.+||....   ....+..+...+.+++|+|||+.|+..+.+   ..|.+||+.+++....   ....+....++|+|
T Consensus       184 ~~l~i~D~~g~---~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDGY---NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---ASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCCC---CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---ccCCCCccCceECC
Confidence            36888988654   333455567789999999999999887643   4699999988864332   23344556889999


Q ss_pred             CCCEEEE-EeCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCe--EEEEecccccccccc
Q 016982          109 KENKFAV-GSGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGK--CRVFSTFIKGVDIKE  182 (379)
Q Consensus       109 ~~~~l~~-~~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~  182 (379)
                      ||+.++. .+.++  .|++||+.++.    .+.+ ..+.......+|+|||++|+..+. ++.  |.++|+         
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~----~~~l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl---------  323 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQ----LTRL-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAA---------  323 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCC----eEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC---------
Confidence            9997764 44455  58888887765    2333 445555567899999998887764 455  444443         


Q ss_pred             ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEEEEECCCCCceeeeeeeecCCeeeEEEecCC
Q 016982          183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK  259 (379)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~  259 (379)
                               ..++ ...+..+......++|+|+|++++..+.++   .|.+||+.++..  ..+. +......+.|+|||
T Consensus       324 ---------~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~--~~Lt-~~~~~~~p~~spdG  390 (433)
T PRK04922        324 ---------SGGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV--RTLT-PGSLDESPSFAPNG  390 (433)
T ss_pred             ---------CCCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe--EECC-CCCCCCCceECCCC
Confidence                     2222 222222233345789999999998765433   699999877653  2333 23345678999999


Q ss_pred             cEEEEE
Q 016982          260 MVIGVG  265 (379)
Q Consensus       260 ~~l~~~  265 (379)
                      ++|+..
T Consensus       391 ~~i~~~  396 (433)
T PRK04922        391 SMVLYA  396 (433)
T ss_pred             CEEEEE
Confidence            987743

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=2.5e-17  Score=137.16  Aligned_cols=225  Identities=16%  Similarity=0.167  Sum_probs=157.4

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTV  122 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v  122 (379)
                      .....|.+|.+.|++++|+.+|.+|++|+.|-.+.|||.-..+....+. .+|...|.++.|-|  +.+.+++|..|..|
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-TGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-cccccceeEEeeeccCCCeEEEeccCcceE
Confidence            4556789999999999999999999999999999999998777666665 68999999999999  56788999999999


Q ss_pred             EEEEeecCCc-------eeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCccc
Q 016982          123 CICYYEQENN-------WWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG  194 (379)
Q Consensus       123 ~i~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  194 (379)
                      +++|+...+.       ....... ..|...|..++-.|++ +.+.++++||+++-+|++       ++...... ....
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiR-------Eph~c~p~-~~~~  190 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIR-------EPHVCNPD-EDCP  190 (758)
T ss_pred             EEEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeeccc-------CCccCCcc-cccc
Confidence            9999985321       0112222 6788889999999988 889999999999999873       11100000 0000


Q ss_pred             ceEEEeecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCC-------------c----eeeee-eeec--------
Q 016982          195 EQILQLDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPS-------------P----LAQNV-AFRD--------  247 (379)
Q Consensus       195 ~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~-------------~----~~~~~-~~~~--------  247 (379)
                      ..+..+...--...++..+|. ..+|++|+.|-..++||.+...             +    ++..+ .+|-        
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~  270 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD  270 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence            111111111234678999994 5678999999999999943210             0    11111 1111        


Q ss_pred             ---CCeeeEEEecCCcEEEEE-eCCCeEEEEecCCC
Q 016982          248 ---LPLRDVLFVSEKMVIGVG-FDCNPMVFAADETG  279 (379)
Q Consensus       248 ---~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~~~~  279 (379)
                         ..++-+.|+|+|.-|..+ ....+++|+.+...
T Consensus       271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence               115668999998755544 44478888877643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=2.2e-14  Score=111.95  Aligned_cols=179  Identities=19%  Similarity=0.240  Sum_probs=133.3

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-CCceeeeEEeecCCCceeEEEECCCC
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE-GSEWVPTLVILRLNRAALCVQWSPKE  110 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~  110 (379)
                      ..|.|||-...  .++.++. ...+|.++.+.++  .|++.- .+.|.||... +.+....+.....+....+++-+.+.
T Consensus        75 NkviIWDD~k~--~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   75 NKVIIWDDLKE--RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             ceEEEEecccC--cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            47999995443  5666655 4678999999865  566554 4689999988 44555555544444554444433344


Q ss_pred             CEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe-EEEEeccccccccccccCCCc
Q 016982          111 NKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK-CRVFSTFIKGVDIKEKKEGTS  188 (379)
Q Consensus       111 ~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~  188 (379)
                      .+||.- -.-|.|+|-|+...... ....+ .+|...|.|++.+-+|..+|+++..|+ |+|||.               
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~-~p~~I-~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt---------------  211 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPN-APSII-NAHDSDIACVALNLQGTLVATASTKGTLIRIFDT---------------  211 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcC-CceEE-EcccCceeEEEEcCCccEEEEeccCcEEEEEEEc---------------
Confidence            455543 34789999998776521 12344 799999999999999999999999997 899996               


Q ss_pred             cCCcccceEEEeecC--CcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          189 SDTKFGEQILQLDLS--FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       189 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                         .+++.+.++...  ...|.+++|||++.+|+++|..|+++|+.++..
T Consensus       212 ---~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  212 ---EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             ---CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence               778888888532  346999999999999999999999999987653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=3.5e-18  Score=148.78  Aligned_cols=250  Identities=15%  Similarity=0.173  Sum_probs=179.4

Q ss_pred             EEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982           47 LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY  126 (379)
Q Consensus        47 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~  126 (379)
                      +..+.+|...|.|..|...|.++++|+.|..++||.++++.+....  .+|.+.++.++.+.+..++++++.|..|++|.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~--rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC--RGHSGDITDLAVSSNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC--CCCccccchhccchhhhhhhhcccCceEEEEe
Confidence            3456789999999999999999999999999999999999866655  78999999999999999999999999999999


Q ss_pred             eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982          127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW  206 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (379)
                      +..+..   ...+ .+|.+.|++++|+|-.    +.+.||++++||.+.....+.+.+  .           .+.. ...
T Consensus       261 l~~~~p---vsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp--~-----------~~~~-~~~  318 (1113)
T KOG0644|consen  261 LPDGAP---VSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRP--L-----------KFTE-KDL  318 (1113)
T ss_pred             cCCCch---HHHH-hccccceeeeccCccc----cCCCCCceEeccccccccccCCCC--C-----------Cccc-ccc
Confidence            998873   5556 8999999999999964    678899999998631111110000  0           0111 234


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-E-EEEEeCCCeEEEEecCCCcEEEE
Q 016982          207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-V-IGVGFDCNPMVFAADETGIWTFI  284 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~-l~~~~d~~~~i~~~~~~~~~~~~  284 (379)
                      +.++.|-.++..+++++.|+.-..|.+....       .+...+.-+.++.+-. + +.+-.+..+.+|+.......+  
T Consensus       319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H--  389 (1113)
T KOG0644|consen  319 VDSILFENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH--  389 (1113)
T ss_pred             eeeeeccccccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhh--
Confidence            6677788888889999999988888654311       1222222222222221 2 223344445555433221111  


Q ss_pred             EEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982          285 KFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV  364 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~  364 (379)
                                                                  .+.+|...+..+.+++.+.    +.-.++|.||+..
T Consensus       390 --------------------------------------------~l~ghsd~~yvLd~Hpfn~----ri~msag~dgst~  421 (1113)
T KOG0644|consen  390 --------------------------------------------NLMGHSDEVYVLDVHPFNP----RIAMSAGYDGSTI  421 (1113)
T ss_pred             --------------------------------------------hhcccccceeeeeecCCCc----HhhhhccCCCceE
Confidence                                                        3468999999999776665    7788999999999


Q ss_pred             EEeCCCccccccC
Q 016982          365 TWDLESQEDLLNY  377 (379)
Q Consensus       365 iW~~~~~~~~~~~  377 (379)
                      |||+-.|..++.+
T Consensus       422 iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  422 IWDIWEGIPIKHY  434 (1113)
T ss_pred             eeecccCCcceee
Confidence            9999988777654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=3.7e-16  Score=139.80  Aligned_cols=249  Identities=12%  Similarity=0.139  Sum_probs=172.4

Q ss_pred             cceeEEEeCC--CCcEEEEEecCCeEEEEEecCC---ceEEEEEeccCC-------CceEEEEEcCCCCEEEEEeCCCeE
Q 016982           11 QCITCHAWSP--DHAMVAFCPNNNEVHIYKLIQE---KWEKLHVLQKHD-------QIVSGIDWSVRSNRIVTVSHDRNS   78 (379)
Q Consensus        11 ~~i~~~~~s~--~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d~~i   78 (379)
                      ..|+.+.+-.  |..++++|+.||.|+||+-...   +.+.+....+-.       +.=.-+.|.....+|++++.-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            4677787754  4568999999999999975432   234444333211       111345677766677777767899


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC--EEEEEEcCC
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS--VTSVAWHPN  155 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~  155 (379)
                      +|||.........+. .+....++++.-+. .|+.+++|..||.|++||.+........... ..|...  |..+.+.+.
T Consensus      1190 RIWDa~~E~~~~diP-~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIP-YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-REHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred             EEEecccceeEeecc-cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-cccCCcccceeEEeecC
Confidence            999999887655543 33456677776544 5799999999999999999887643334444 677776  999999997


Q ss_pred             C-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC---CcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982          156 N-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS---FSWAFGVKWSPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       156 ~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~d~~i~v~  231 (379)
                      | ..|++|+.+|.|++||++.                ...+...++..|   .+..+++..+++...+|+|+. +.|+||
T Consensus      1268 G~~elvSgs~~G~I~~~DlR~----------------~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRM----------------SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred             CCcceeeeccCCeEEEEeccc----------------CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence            7 4599999999999999831                111222222222   235899999999999999988 999999


Q ss_pred             ECCCCCceeee-----eeeecCCeeeEEEecCCcEEEEE-eCCCeEEEEecCC
Q 016982          232 DDVGPSPLAQN-----VAFRDLPLRDVLFVSEKMVIGVG-FDCNPMVFAADET  278 (379)
Q Consensus       232 d~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~~~  278 (379)
                      ++.........     +....+.+.+++|+|-.-++|+| .|..|.+|.....
T Consensus      1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            98764321111     11123457899999988788754 5667778775543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=6e-16  Score=122.62  Aligned_cols=200  Identities=15%  Similarity=0.264  Sum_probs=144.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCce
Q 016982           55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNW  133 (379)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~  133 (379)
                      ..+..++|++.-..++++..|-.|++|+-... +...+. ......|++++|-|. ++.|++|+. +.|.+|......+.
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lk-s~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~  175 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLK-SVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA  175 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceec-chhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence            35678999997677889999999999998773 333332 345678999999995 467888886 45889976543210


Q ss_pred             e---------EEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          134 W---------VSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       134 ~---------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      .         ..+.++.....+|+++.|.+||..+++++. +..|.|||.                  .++..+.-....
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdp------------------dtg~~~pL~~~g  237 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDP------------------DTGQKIPLIPKG  237 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcC------------------CCCCcccccccC
Confidence            0         111222222368999999999999998885 678999997                  444444333334


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      .+.++-+.|||||.+|+.+.-|+..++|+........+...+ .+.|...+|+|+|++|.....+..++|...
T Consensus       238 lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~  309 (445)
T KOG2139|consen  238 LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLT  309 (445)
T ss_pred             CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence            567889999999999999999999999965544322233332 448999999999999887777777777654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.73  E-value=5.4e-15  Score=116.51  Aligned_cols=249  Identities=10%  Similarity=0.086  Sum_probs=179.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.+.|++...-|...-+++.+.|.+++||--.+....-.........+++++.+.++...|+.+-.+|++.-+.+.
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s   98 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS   98 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence            35678888998888887788999999999999965543111111222235688999999999999999999999888764


Q ss_pred             CC----ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           85 GS----EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        85 ~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      ..    ...+  ....|...+..+.|+....++++.+.|..+.---.+.+..  +.... .  ....+++.+.-.  +..
T Consensus        99 edfnkm~~~r--~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~--lg~Y~-~--~~~~t~~~~d~~--~~f  169 (404)
T KOG1409|consen   99 EDFNKMTFLK--DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR--LGGYN-F--ETPASALQFDAL--YAF  169 (404)
T ss_pred             hhhhhcchhh--hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc--ccceE-e--eccCCCCceeeE--EEE
Confidence            32    2222  2256889999999999999999999998875433443332  11111 0  011111222111  445


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      .|...|.+....+.                ......+.++.+|.+.+.+++|.|....|+++..|..+.+||+...+...
T Consensus       170 vGd~~gqvt~lr~~----------------~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~  233 (404)
T KOG1409|consen  170 VGDHSGQITMLKLE----------------QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA  233 (404)
T ss_pred             ecccccceEEEEEe----------------ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence            56666766665542                24457788999999999999999999999999999999999998877777


Q ss_pred             eeeeeecCCeeeEEEecC-CcEEEEEeCCCeEEEEecCC
Q 016982          241 QNVAFRDLPLRDVLFVSE-KMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~-~~~l~~~~d~~~~i~~~~~~  278 (379)
                      ..+.+|...|..+...+- .++++++.|+.+.+|+.+..
T Consensus       234 ~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  234 YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            888899999988887764 45667899999999997753

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.73  E-value=1.1e-16  Score=132.97  Aligned_cols=173  Identities=17%  Similarity=0.219  Sum_probs=125.3

Q ss_pred             CCCcEEEEEecCCeEEEEEecCCceEEEEEec--cCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeccCC----------
Q 016982           20 PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ--KHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQEGS----------   86 (379)
Q Consensus        20 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~----------   86 (379)
                      |.+--|..|-..|.|++.|....+...+....  -....|+++.|-|.+ ..++.+-.+|.+++||.+-.          
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            45555777777889999887653211111111  123689999999866 45566667899999975311          


Q ss_pred             ----cee------------eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE
Q 016982           87 ----EWV------------PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV  150 (379)
Q Consensus        87 ----~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~  150 (379)
                          ...            +.....-..+.|...+|+|||++||+.+.||.++|||+.+.+   +.... +...+...|+
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e---Llg~m-kSYFGGLLCv  338 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE---LLGVM-KSYFGGLLCV  338 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH---HHHHH-HhhccceEEE
Confidence                000            001111124578899999999999999999999999999876   23333 5556789999


Q ss_pred             EEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC
Q 016982          151 AWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP  214 (379)
Q Consensus       151 ~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  214 (379)
                      +|+|||+++++|++|.-|.||.+                  ...+.+..=++|..+|..++|+|
T Consensus       339 cWSPDGKyIvtGGEDDLVtVwSf------------------~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  339 CWSPDGKYIVTGGEDDLVTVWSF------------------EERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEcCCccEEEecCCcceEEEEEe------------------ccceEEEeccccccceeeEeecc
Confidence            99999999999999999999986                  55677777789999999999983

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=2.3e-14  Score=111.90  Aligned_cols=236  Identities=14%  Similarity=0.142  Sum_probs=154.9

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCC--ceEEEEEcCCCCEEEE-EeCC------CeEEEE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ--IVSGIDWSVRSNRIVT-VSHD------RNSYVW   81 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~d------~~i~vw   81 (379)
                      .....++|+.|..-+++|..+ -.+||+.+.=  +.....+.+..  .+..+-|  ..++|+- |+.+      .+|.||
T Consensus         6 ~~~lsvs~NQD~ScFava~~~-Gfriyn~~P~--ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW   80 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDT-GFRIYNCDPF--KESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW   80 (346)
T ss_pred             CceeEEEEccCCceEEEEecC-ceEEEecCch--hhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence            345569999999999998765 5899988752  22111111222  2222222  2345543 3322      469999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~  160 (379)
                      |=....++..+   ....+|.++.+.++  .|++.- .+.|++|.+.....  ....+. ......+.+++-..+..+||
T Consensus        81 DD~k~~~i~el---~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k--~l~~~et~~NPkGlC~~~~~~~k~~La  152 (346)
T KOG2111|consen   81 DDLKERCIIEL---SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK--LLHVIETRSNPKGLCSLCPTSNKSLLA  152 (346)
T ss_pred             ecccCcEEEEE---EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh--heeeeecccCCCceEeecCCCCceEEE
Confidence            95555544444   35789999999865  566655 47899999874432  222221 12233344443333445555


Q ss_pred             Ee-eCCCeEEEEeccccccccccccCCCccCCcccc-eEEEeecCCcceEEEEECCCCCEEEEEcCCCe-EEEEECCCCC
Q 016982          161 TT-STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE-QILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM-IYFVDDVGPS  237 (379)
Q Consensus       161 ~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-i~v~d~~~~~  237 (379)
                      .- -.-|.|+|-|+.                 .+.. ....+..|...|.+++++.+|..+|++|..|+ |+|||..++.
T Consensus       153 fPg~k~GqvQi~dL~-----------------~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~  215 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLA-----------------STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT  215 (346)
T ss_pred             cCCCccceEEEEEhh-----------------hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence            53 357899999973                 1111 34667899999999999999999999999986 8899999887


Q ss_pred             ceeeeee-e-ecCCeeeEEEecCCcEEEEE-eCCCeEEEEecC
Q 016982          238 PLAQNVA-F-RDLPLRDVLFVSEKMVIGVG-FDCNPMVFAADE  277 (379)
Q Consensus       238 ~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~~  277 (379)
                      .+ +++. + ....|++++|||+..+||++ ..+++.+|.+.+
T Consensus       216 ~l-~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  216 LL-QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             Ee-eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            54 5554 2 23569999999999999955 556899998765

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=5.8e-16  Score=117.50  Aligned_cols=205  Identities=13%  Similarity=0.142  Sum_probs=149.1

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe--------------------------------------
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL--------------------------------------   50 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--------------------------------------   50 (379)
                      +...|+.+.--|+ ..|.+-++|+.+.+|++..+.+..++.+                                      
T Consensus        55 g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~  133 (323)
T KOG0322|consen   55 GRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG  133 (323)
T ss_pred             ccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence            4678888888887 5677778999999999865311111100                                      


Q ss_pred             -------------ccCCCceEEEEEcC-CCC--EEEEEeCCCeEEEEeccCCcee--------eeEEeecCCCceeEEEE
Q 016982           51 -------------QKHDQIVSGIDWSV-RSN--RIVTVSHDRNSYVWNQEGSEWV--------PTLVILRLNRAALCVQW  106 (379)
Q Consensus        51 -------------~~~~~~v~~~~~~~-~~~--~l~~~~~d~~i~vw~~~~~~~~--------~~~~~~~~~~~v~~~~~  106 (379)
                                   .+..+.+.+..+.. ++.  +++.|-.+|.+.+||+.++..+        -......|.++|.++.|
T Consensus       134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy  213 (323)
T KOG0322|consen  134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY  213 (323)
T ss_pred             CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence                         00112344555422 222  4567778999999999987321        11223568899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEeecCCc-eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccC
Q 016982          107 SPKENKFAVGSGAKTVCICYYEQENN-WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       107 ~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  185 (379)
                      .+.-..=++|+.+..+..|.++.... ..+...+ .-....+..+..-||++.+|+++.|+.|+||.-            
T Consensus       214 as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~-~lknpGv~gvrIRpD~KIlATAGWD~RiRVysw------------  280 (323)
T KOG0322|consen  214 ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI-TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSW------------  280 (323)
T ss_pred             chhhcCCcCCCccccceeeeeccccCcccccceE-EecCCCccceEEccCCcEEeecccCCcEEEEEe------------
Confidence            87655557777788888898876532 1122222 223446788999999999999999999999985            


Q ss_pred             CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                            ++..++..+..|...|++++|+|+...+|.++.|++|.+|++
T Consensus       281 ------rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  281 ------RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ------ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                  788999999999999999999999999999999999999986

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.72  E-value=1.3e-13  Score=117.29  Aligned_cols=190  Identities=13%  Similarity=0.098  Sum_probs=126.5

Q ss_pred             cEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCce
Q 016982           23 AMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA  101 (379)
Q Consensus        23 ~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v  101 (379)
                      +++ ++-..++.|.+.|..+.  +.+..+......-..+.|+|||+++++++.|+.|.++|+.+.+.+..+..   ....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~~~   80 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATN--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GGNP   80 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SSEE
T ss_pred             cEEEEEecCCCEEEEEECCCC--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CCCc
Confidence            445 44556899999999886  67777776554445678999999999999999999999999997776643   4567


Q ss_pred             eEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeec------CCcCEEEEEEcCCCcEEEEeeC-CCeEEEEec
Q 016982          102 LCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKR------HDSSVTSVAWHPNNVFLATTST-DGKCRVFST  173 (379)
Q Consensus       102 ~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~  173 (379)
                      ..+++++||++++++. ..+.+.++|.++.+   ..+.+...      ....+..+..+|....++..-. .+.|.+.|.
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle---~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLE---PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEecccccc---ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence            8999999999998876 48999999988876   34444211      2356788888888875555544 578877775


Q ss_pred             cccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCC
Q 016982          174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPS  237 (379)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~  237 (379)
                      .                 ....................|+|++++++.+ ..++.|-++|..+.+
T Consensus       158 ~-----------------d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  158 S-----------------DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             T-----------------TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             c-----------------cccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence            2                 1112222222224456789999999987664 466789999987764

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.71  E-value=1.7e-12  Score=110.64  Aligned_cols=262  Identities=16%  Similarity=0.092  Sum_probs=171.6

Q ss_pred             CcceeEEEeCCCCcEEEEEec----CCeEEEEEecC--CceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEe
Q 016982           10 AQCITCHAWSPDHAMVAFCPN----NNEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWN   82 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~----dg~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~   82 (379)
                      ......++++|++++|.+...    ++.|..|++..  ++++.+............++++|++++|+++. .+|.|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            455677899999999988766    57999999886  45666666654444556899999999998886 588999999


Q ss_pred             ccC-CceeeeEEeec-----------CCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCc-eeEEEEEeecCCcCEE
Q 016982           83 QEG-SEWVPTLVILR-----------LNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENN-WWVSKLIRKRHDSSVT  148 (379)
Q Consensus        83 ~~~-~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~  148 (379)
                      +.. +..........           ......++.++|+++++++... ...|.+|+++.... ......+.......-.
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            987 43333221111           1245678999999998887654 45799999987652 1112223235556778


Q ss_pred             EEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEeec----C--CcceEEEEECCCCCEEEE
Q 016982          149 SVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL----S--FSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       149 ~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~v~~~~~sp~~~~l~~  221 (379)
                      .+.|+|+++++.+.. .++.|.++++.....              ..+.+..+..    .  ......++++|||++|++
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv  261 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--------------SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV  261 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTT--------------EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCC--------------ceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence            999999998776655 578899998730000              0111222211    1  125788999999999877


Q ss_pred             Ec-CCCeEEEEECCCC-Cc--eeeeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEec-CCCcEEEEE
Q 016982          222 VG-HNSMIYFVDDVGP-SP--LAQNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAAD-ETGIWTFIK  285 (379)
Q Consensus       222 ~~-~d~~i~v~d~~~~-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~-~~~~~~~~~  285 (379)
                      +. ..+.|.+|++... ..  .+..+...+...+.++++|+|++|+++  .++.+.+|..+ ..|.+....
T Consensus       262 snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             EECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence            65 5678999998432 22  223333334557899999999988854  45589999887 456666544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.71  E-value=1.7e-13  Score=116.53  Aligned_cols=259  Identities=12%  Similarity=0.097  Sum_probs=158.0

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeee
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~   91 (379)
                      -..+.|+|||+++.++++||.|.++|+.+.  +.+.+++... ....+++++||++++++. .++.+.++|.++.+.+..
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~  115 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT  115 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence            345789999999999999999999999998  5777776544 457899999999988765 678999999999987776


Q ss_pred             EEeecC-----CCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eC
Q 016982           92 LVILRL-----NRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-ST  164 (379)
Q Consensus        92 ~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~  164 (379)
                      +.....     ...+..+..+|....+++.-. .+.|.+.|+...... ....  ...........|+|++++++.+ ..
T Consensus       116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-~~~~--i~~g~~~~D~~~dpdgry~~va~~~  192 (369)
T PF02239_consen  116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-KVTT--IKVGRFPHDGGFDPDGRYFLVAANG  192 (369)
T ss_dssp             EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-EEEE--EE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred             cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-ceee--ecccccccccccCcccceeeecccc
Confidence            654322     346778888888875555544 577777776655432 1222  2345567889999999987664 34


Q ss_pred             CCeEEEEecccccccc----ccc--------------------------------cCCC-ccCCcccceEEEeecCCcce
Q 016982          165 DGKCRVFSTFIKGVDI----KEK--------------------------------KEGT-SSDTKFGEQILQLDLSFSWA  207 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~----~~~--------------------------------~~~~-~~~~~~~~~~~~~~~~~~~v  207 (379)
                      ++.+-++|........    ...                                ..+. ..+....+.++++....++ 
T Consensus       193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-  271 (369)
T PF02239_consen  193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-  271 (369)
T ss_dssp             GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-
T ss_pred             cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-
Confidence            5677777765321110    000                                0000 1234556677777765555 


Q ss_pred             EEEEECCCCCEEEEE----cCCCeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEEE-EEeCC--CeEEEEecCCC
Q 016982          208 FGVKWSPSGNTLAYV----GHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVIG-VGFDC--NPMVFAADETG  279 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~----~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~-~~~d~--~~~i~~~~~~~  279 (379)
                      ..+..+|+++++.+.    ...+.|.++|.++.+ ....+.. ....+..+.|+++|+.+- +..++  .+.+|+...-.
T Consensus       272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~  350 (369)
T PF02239_consen  272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK  350 (369)
T ss_dssp             --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred             ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence            678889999999987    455899999998874 3344432 234588999999998655 33333  58888866543

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.71  E-value=9.3e-15  Score=115.22  Aligned_cols=264  Identities=12%  Similarity=0.095  Sum_probs=173.9

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCC---ceEEEEEeccCCC------------ceEEEEEcCCCC--EEEEE
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE---KWEKLHVLQKHDQ------------IVSGIDWSVRSN--RIVTV   72 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~~~------------~v~~~~~~~~~~--~l~~~   72 (379)
                      .+-|.++.|..+|.+||+|..+|.|.+|.-...   +......++.|..            .|+.+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            567999999999999999999999999976542   2334555655643            578899998763  56667


Q ss_pred             eCCCeEEEEeccCCceee--------------------e--------------EEeecCCCceeEEEECCCCCEEEEEeC
Q 016982           73 SHDRNSYVWNQEGSEWVP--------------------T--------------LVILRLNRAALCVQWSPKENKFAVGSG  118 (379)
Q Consensus        73 ~~d~~i~vw~~~~~~~~~--------------------~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~~  118 (379)
                      +.|.+|++|.+.......                    .              .....|.--|.+++++.|...++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            889999999875431111                    0              11134566788999999988887765 


Q ss_pred             CCeEEEEEeecCCceeEEEEEeecC-----CcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCc
Q 016982          119 AKTVCICYYEQENNWWVSKLIRKRH-----DSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTK  192 (379)
Q Consensus       119 d~~v~i~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~  192 (379)
                      |=.|.+|+++-.....-..-+ +++     ...|++..|+|.. +.++..+..|+|++.|++....=.+..+...  ...
T Consensus       184 dLRINLWnlei~d~sFnIVDI-KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE--epe  260 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDI-KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE--EPE  260 (433)
T ss_pred             ceeeeeccccccCCceeEEEc-cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc--ccc
Confidence            678999998765431111111 222     3468899999965 7888899999999998742111000000000  000


Q ss_pred             ccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC------------C---eeeEEEec
Q 016982          193 FGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL------------P---LRDVLFVS  257 (379)
Q Consensus       193 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~------------~---i~~~~~s~  257 (379)
                      .+....-|..--..|..+.|+++|+|+++-. --+|++||+......+.+.+.|..            .   -..++|+.
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence            0000111122234588999999999998643 368999999766555566665532            1   24588998


Q ss_pred             CCcEEE-EEeCCCeEEEEecCC
Q 016982          258 EKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       258 ~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      ++.+++ +++.+..++|....+
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CcceEecccccceEEEecCCCC
Confidence            888777 667888888885544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=3.7e-17  Score=133.39  Aligned_cols=236  Identities=16%  Similarity=0.149  Sum_probs=179.5

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      ...|.++.|-.+..++|++ ....++|||-..   ..++.+..|. .|..+.|.|..-+|++++..|.+.--|+.+|+.+
T Consensus       170 ~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G---tElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV  244 (545)
T KOG1272|consen  170 METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG---TELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV  244 (545)
T ss_pred             hhhhhhhhhhcchHHHHhh-hhceEEEecCCC---cEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhh
Confidence            5678888998888889888 567999999765   5777777664 7899999999988999999999999999999977


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                      ..+  ....+.+..++-+|-+..+-+|...|+|.+|......+  +.+.  ..|.++|.++++.++|++++|.+.|..++
T Consensus       245 a~~--~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP--LvKi--LcH~g~V~siAv~~~G~YMaTtG~Dr~~k  318 (545)
T KOG1272|consen  245 ASI--RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP--LVKI--LCHRGPVSSIAVDRGGRYMATTGLDRKVK  318 (545)
T ss_pred             HHH--HccCCccchhhcCCccceEEEcCCCceEEecCCCCcch--HHHH--HhcCCCcceEEECCCCcEEeeccccccee
Confidence            766  34568888899999999999999999999998877664  4444  48999999999999999999999999999


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE-CCCCC-ceeeeeeee-
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD-DVGPS-PLAQNVAFR-  246 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d-~~~~~-~~~~~~~~~-  246 (379)
                      |||+                  +....+.++.. ..+...+++|..|  +++.+....+.||. .-.+. ......-.| 
T Consensus       319 IWDl------------------R~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~  377 (545)
T KOG1272|consen  319 IWDL------------------RNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHR  377 (545)
T ss_pred             Eeee------------------ccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhc
Confidence            9998                  33334444433 3456788888766  34445667899994 22211 111111122 


Q ss_pred             -cCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          247 -DLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       247 -~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                       ..+|..+.|.|-..+|-.|..+.+.-.-..+
T Consensus       378 ~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPG  409 (545)
T KOG1272|consen  378 CGGPVEDLRFCPYEDVLGIGHAGGITSILVPG  409 (545)
T ss_pred             cCcccccceeccHHHeeeccccCCceeEeccC
Confidence             4589999999987888777666554333333

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=3.7e-15  Score=115.10  Aligned_cols=150  Identities=19%  Similarity=0.285  Sum_probs=106.1

Q ss_pred             EEEEEcCCCCEEEEEeC----------CCeEEEEeccCC-ceeeeEEeecCCCceeEEEECCCCCEEEEEe--CCCeEEE
Q 016982           58 SGIDWSVRSNRIVTVSH----------DRNSYVWNQEGS-EWVPTLVILRLNRAALCVQWSPKENKFAVGS--GAKTVCI  124 (379)
Q Consensus        58 ~~~~~~~~~~~l~~~~~----------d~~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~i  124 (379)
                      ..+.|+|+|++|+.-..          -+...+|.++.. .....+. ....++|.+++|+|+|+.|++..  .++.+.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee-ccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            36789999987765432          133556655333 2223332 23345799999999999876653  4678999


Q ss_pred             EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      ||++...    ...+   ....+..+.|+|+|++|++++.   .|.+.+||+                  +..+.+....
T Consensus        88 yd~~~~~----i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~------------------~~~~~i~~~~  142 (194)
T PF08662_consen   88 YDVKGKK----IFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV------------------RKKKKISTFE  142 (194)
T ss_pred             EcCcccE----eEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEEC------------------CCCEEeeccc
Confidence            9996322    3333   4567789999999999999874   467999997                  4556666554


Q ss_pred             cCCcceEEEEECCCCCEEEEEcC------CCeEEEEECCC
Q 016982          202 LSFSWAFGVKWSPSGNTLAYVGH------NSMIYFVDDVG  235 (379)
Q Consensus       202 ~~~~~v~~~~~sp~~~~l~~~~~------d~~i~v~d~~~  235 (379)
                      .  ..++.++|+|+|++|+++..      |+.++||+...
T Consensus       143 ~--~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  143 H--SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             c--CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            3  34789999999999998863      78899999754

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.70  E-value=7.5e-15  Score=113.43  Aligned_cols=148  Identities=15%  Similarity=0.296  Sum_probs=104.7

Q ss_pred             eEEEeCCCCcEEEEEec----------CCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCCCEEEEE--eCCCeEEE
Q 016982           14 TCHAWSPDHAMVAFCPN----------NNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTV--SHDRNSYV   80 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~v   80 (379)
                      ..+.|+|+|++|++-..          -+...+|.++... .....+.- ..++|.+++|+|+|+.|++.  ..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            45789999988765433          2345666664332 23333332 34579999999999887554  35678999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC---CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG---AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      ||++ .+.  ...+  ....+..+.|+|+|+++++++.   .|.+.+||.+..+   ....   .....+..++|+|+|+
T Consensus        88 yd~~-~~~--i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~---~i~~---~~~~~~t~~~WsPdGr  156 (194)
T PF08662_consen   88 YDVK-GKK--IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK---KIST---FEHSDATDVEWSPDGR  156 (194)
T ss_pred             EcCc-ccE--eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE---Eeec---cccCcEEEEEEcCCCC
Confidence            9997 332  2322  3567789999999999999875   4679999999654   2222   2334578999999999


Q ss_pred             EEEEeeC------CCeEEEEec
Q 016982          158 FLATTST------DGKCRVFST  173 (379)
Q Consensus       158 ~l~~~~~------d~~i~v~d~  173 (379)
                      +|+++..      |+.++||+.
T Consensus       157 ~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  157 YLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             EEEEEEeccceeccccEEEEEe
Confidence            9998874      678999986

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=2.6e-15  Score=120.17  Aligned_cols=250  Identities=14%  Similarity=0.150  Sum_probs=181.6

Q ss_pred             CcceeEEEeCCCCc--EEEEEecCCeEEEEEecCCceEEE----EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982           10 AQCITCHAWSPDHA--MVAFCPNNNEVHIYKLIQEKWEKL----HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus        10 ~~~i~~~~~s~~~~--~l~~~~~dg~i~i~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ...|+.++|..+++  .|...+.+..+..+..........    ........+|..++..  ...|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            45677888876553  444444566777777665421111    1333345566666654  347888889999999998


Q ss_pred             cCCc--eeeeEEeecCCCceeEEEECCCC-CEEEEEeCC--CeEEEEEeecCCceeEEEEEee-----cCCcCEEEEEEc
Q 016982           84 EGSE--WVPTLVILRLNRAALCVQWSPKE-NKFAVGSGA--KTVCICYYEQENNWWVSKLIRK-----RHDSSVTSVAWH  153 (379)
Q Consensus        84 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--~~v~i~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~  153 (379)
                      +.+.  -.+... .....++..+.-++.. ..+++|+..  ..+.+||++.....+..+.+..     .-.-.++++.|-
T Consensus       133 k~~d~hss~l~~-la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  133 KSGDLHSSKLIK-LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             cCCcccccccee-eecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            8543  111122 2234567777777744 456668888  8899999988754322222210     112356788898


Q ss_pred             CC--CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982          154 PN--NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       154 p~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~  231 (379)
                      |.  ...|++++.-+.+++||+                 ....+++.+|.....+++++...|+|+++++|..-+.+..|
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt-----------------~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F  274 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDT-----------------RHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF  274 (412)
T ss_pred             CCCCCceEEEEecceeEEEecC-----------------cccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence            87  789999999999999998                 35567888888888899999999999999999999999999


Q ss_pred             ECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      |+++++.....+.+-.+.|+++..+|.+++++ +|-|..++|++....+
T Consensus       275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            99998866666888889999999999999999 8899999999987643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.70  E-value=7.8e-12  Score=106.63  Aligned_cols=280  Identities=10%  Similarity=0.115  Sum_probs=176.0

Q ss_pred             EEEEecC----CeEEEEEe--cCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC----CCeEEEEeccCC--ceeeeE
Q 016982           25 VAFCPNN----NEVHIYKL--IQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH----DRNSYVWNQEGS--EWVPTL   92 (379)
Q Consensus        25 l~~~~~d----g~i~i~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~vw~~~~~--~~~~~~   92 (379)
                      +++|+..    +.|++|++  +++++..+..+.. ......++++|++++|.+...    ++.|..|++...  ++...-
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4556655    78999998  4555555555432 344577999999999988876    468999988764  433333


Q ss_pred             EeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEE-EEEe---------ecCCcCEEEEEEcCCCcEEEE
Q 016982           93 VILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVS-KLIR---------KRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~-~~~~---------~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ...........++++|++++|+++.. +|.+.++++......... ..+.         ........++.|+|+++++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            32324556678999999999999875 899999999875321111 1110         012346789999999998877


Q ss_pred             eeC-CCeEEEEeccccccccccccCCCccCCcccce--EEEee-cCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCC
Q 016982          162 TST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ--ILQLD-LSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGP  236 (379)
Q Consensus       162 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~  236 (379)
                      ... ...|.+|++..                ..++.  ...+. ........++|+|+++++++. ..++.|.++++...
T Consensus       161 ~dlG~D~v~~~~~~~----------------~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~  224 (345)
T PF10282_consen  161 PDLGADRVYVYDIDD----------------DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS  224 (345)
T ss_dssp             EETTTTEEEEEEE-T----------------TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EecCCCEEEEEEEeC----------------CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence            643 45799998731                11111  22222 223457899999999987655 46788999988722


Q ss_pred             C-c--eeeeeeee------cCCeeeEEEecCCcEEEEE--eCCCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCcc
Q 016982          237 S-P--LAQNVAFR------DLPLRDVLFVSEKMVIGVG--FDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFS  304 (379)
Q Consensus       237 ~-~--~~~~~~~~------~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
                      . .  .++.+...      ......+.++|||++|.++  ..+.|.+|..+. .+..........               
T Consensus       225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~---------------  289 (345)
T PF10282_consen  225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT---------------  289 (345)
T ss_dssp             TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE---------------
T ss_pred             CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC---------------
Confidence            1 1  11222111      1246789999999988755  455788999853 455555443211               


Q ss_pred             cccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee-cCceEEEEeCC
Q 016982          305 EAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTWDLE  369 (379)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~v~iW~~~  369 (379)
                                                  ....-..++ +++++    ++|+.+. .++.|.+|++.
T Consensus       290 ----------------------------~G~~Pr~~~-~s~~g----~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  290 ----------------------------GGKFPRHFA-FSPDG----RYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             ----------------------------SSSSEEEEE-E-TTS----SEEEEEETTTTEEEEEEEE
T ss_pred             ----------------------------CCCCccEEE-EeCCC----CEEEEEecCCCeEEEEEEe
Confidence                                        122356777 67666    7777665 66899999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=4.1e-14  Score=124.89  Aligned_cols=220  Identities=13%  Similarity=0.166  Sum_probs=141.6

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCC--eE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDR--NS   78 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i   78 (379)
                      .+..+...+...+|+|||+.|+..+.+   ..|++|++.+++.+.+..   ..+.+...+|+|||+.|+. .+.++  .|
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~---~~g~~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN---FEGLNGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC---CCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence            355677889999999999999887643   369999998874444333   3334557899999998864 44444  58


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      .+||+.+++...   +..+........|+|||+.++..+. ++  .|+++++..++   ..+..  ..........|+|+
T Consensus       270 y~~d~~~~~~~~---lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt--~~~~~~~~~~~Spd  341 (430)
T PRK00178        270 YVMDLASRQLSR---VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVT--FVGNYNARPRLSAD  341 (430)
T ss_pred             EEEECCCCCeEE---cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEee--cCCCCccceEECCC
Confidence            888998886433   2334455677899999998877664 34  45555665554   22222  11223345789999


Q ss_pred             CcEEEEeeCC-C--eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEE
Q 016982          156 NVFLATTSTD-G--KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIY  229 (379)
Q Consensus       156 ~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~  229 (379)
                      +++++..+.+ +  .|.++|+                  .+++. ..+.. ........|+|||+.++..+.+   ..+.
T Consensus       342 g~~i~~~~~~~~~~~l~~~dl------------------~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~  401 (430)
T PRK00178        342 GKTLVMVHRQDGNFHVAAQDL------------------QRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLM  401 (430)
T ss_pred             CCEEEEEEccCCceEEEEEEC------------------CCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEE
Confidence            9998877653 3  4777775                  22222 22221 1122356899999998877643   3577


Q ss_pred             EEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          230 FVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       230 v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                      ++++.....  +.+..+.+.+...+|+|
T Consensus       402 ~~~~~g~~~--~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        402 LVSINGRVR--LPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EEECCCCce--EECcCCCCCcCCCccCC
Confidence            778755432  34444455677788876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=1.5e-12  Score=104.13  Aligned_cols=262  Identities=11%  Similarity=0.070  Sum_probs=175.4

Q ss_pred             ccceeccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecC--CceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CC
Q 016982            3 AIAVHQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DR   76 (379)
Q Consensus         3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~   76 (379)
                      ..++....+.++-++|+|+++.|.++-.   +|.|--|.++.  +.+..+........+-..++++++|++++++.. .|
T Consensus        32 ~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g  111 (346)
T COG2706          32 LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG  111 (346)
T ss_pred             hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence            3445556788999999999998887754   57888888875  444554444333344478999999999988874 57


Q ss_pred             eEEEEeccC-CceeeeEEeecCCCc----------eeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCC
Q 016982           77 NSYVWNQEG-SEWVPTLVILRLNRA----------ALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHD  144 (379)
Q Consensus        77 ~i~vw~~~~-~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~  144 (379)
                      .|.++.++. +..........|.+.          +....+.|+++++++..- -..|.+|++..+......... ....
T Consensus       112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G  190 (346)
T COG2706         112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG  190 (346)
T ss_pred             eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC
Confidence            899999865 544444444445555          888999999999888764 346889999866522222222 2344


Q ss_pred             cCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEE----eecCCcceEEEEECCCCCEE
Q 016982          145 SSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ----LDLSFSWAFGVKWSPSGNTL  219 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l  219 (379)
                      ..-+.|.|+|++++....++ +++|.+|.......++           +.-+.+.+    |.+ ..+...+..+|||++|
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~-----------~~lQ~i~tlP~dF~g-~~~~aaIhis~dGrFL  258 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF-----------EELQTIDTLPEDFTG-TNWAAAIHISPDGRFL  258 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE-----------EEeeeeccCccccCC-CCceeEEEECCCCCEE
Confidence            55688999999998877665 8999999873211100           00111111    112 3457789999999999


Q ss_pred             EEEc-CCCeEEEEECCCCCceeeee---eeecCCeeeEEEecCCcEEEEEe--CCCeEEEEecC
Q 016982          220 AYVG-HNSMIYFVDDVGPSPLAQNV---AFRDLPLRDVLFVSEKMVIGVGF--DCNPMVFAADE  277 (379)
Q Consensus       220 ~~~~-~d~~i~v~d~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~--d~~~~i~~~~~  277 (379)
                      .++. ....|.+|.+......+..+   ..++...+...|+++|++|++..  ++.+.+|..+.
T Consensus       259 YasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         259 YASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            8775 34578888766543322322   23344578999999999888553  34688888774

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=5.7e-14  Score=122.52  Aligned_cols=227  Identities=14%  Similarity=0.083  Sum_probs=140.0

Q ss_pred             eeccCcceeEEEeCCCCcE--EE-EEecC--CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CC---
Q 016982            6 VHQFAQCITCHAWSPDHAM--VA-FCPNN--NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DR---   76 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~--l~-~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---   76 (379)
                      +......+..-+|||||+.  ++ +...+  ..|++.++.+++.+.+..+.+   .....+|+|||+.|+..+. +|   
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCCCCEEEEEECCCCCcc
Confidence            3444556778899999975  32 33333  468888888775455554443   4456899999998877653 22   


Q ss_pred             -eEEEEeccCCc--eeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982           77 -NSYVWNQEGSE--WVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        77 -~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                       .+.+|++..+.  ....+. ..........+|+|||+.|+..+ .+|...+|.+.........+.+ ..+...+....|
T Consensus       257 i~~~~~~~~~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-t~~~~~~~~p~w  334 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-TKKYRNSSCPAW  334 (428)
T ss_pred             eeEEEeecccCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-ccCCCCccceeE
Confidence             34447766531  111221 12223446789999999888766 4666666655432100012333 344456678999


Q ss_pred             cCCCcEEEEeeCC---CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC---CC
Q 016982          153 HPNNVFLATTSTD---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH---NS  226 (379)
Q Consensus       153 ~p~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~  226 (379)
                      +|||+.|+..+.+   ..|.+||+                  ..++. ..+......+..+.|+|||+.|+..+.   ..
T Consensus       335 SPDG~~Laf~~~~~g~~~I~v~dl------------------~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~  395 (428)
T PRK01029        335 SPDGKKIAFCSVIKGVRQICVYDL------------------ATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNES  395 (428)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEEC------------------CCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCc
Confidence            9999988876543   36888886                  33333 333322335677999999998876443   35


Q ss_pred             eEEEEECCCCCceeeeeeeecCCeeeEEEecC
Q 016982          227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE  258 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~  258 (379)
                      .|+++|+.+++.  ..+....+.+...+|+|-
T Consensus       396 ~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~  425 (428)
T PRK01029        396 ELYLISLITKKT--RKIVIGSGEKRFPSWGAF  425 (428)
T ss_pred             eEEEEECCCCCE--EEeecCCCcccCceecCC
Confidence            788899877653  333334455778888874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.68  E-value=3.9e-14  Score=124.93  Aligned_cols=218  Identities=17%  Similarity=0.262  Sum_probs=140.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCC--eE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDR--NS   78 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~i   78 (379)
                      .+..+...+...+|+|||++|+++..+   ..|++|++.+++...+   ..+...+.+++|+|+|+.|+. .+.++  .|
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i  260 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI  260 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence            345566778899999999999987653   4799999988743333   334455677999999987764 44443  58


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      .+|++.++.....   ..+........|+|+|+.|+..+. ++  .|+++++..+.    ...+ ..+......+.|+|+
T Consensus       261 ~~~d~~~~~~~~l---~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l-~~~~~~~~~~~~spd  332 (417)
T TIGR02800       261 YVMDLDGKQLTRL---TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRL-TFRGGYNASPSWSPD  332 (417)
T ss_pred             EEEECCCCCEEEC---CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEe-ecCCCCccCeEECCC
Confidence            8999988763322   234444567799999998877664 33  46666665554    2333 334556678899999


Q ss_pred             CcEEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEE
Q 016982          156 NVFLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIY  229 (379)
Q Consensus       156 ~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~  229 (379)
                      +++++..+.++   .|.+||+.                  .+. ...+... .......|+|+|++|+..+.++   .++
T Consensus       333 g~~i~~~~~~~~~~~i~~~d~~------------------~~~-~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~  392 (417)
T TIGR02800       333 GDLIAFVHREGGGFNIAVMDLD------------------GGG-ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLG  392 (417)
T ss_pred             CCEEEEEEccCCceEEEEEeCC------------------CCC-eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence            99999887765   67888762                  221 2222211 1234568999999988876543   456


Q ss_pred             EEECCCCCceeeeeeeecCCeeeEEE
Q 016982          230 FVDDVGPSPLAQNVAFRDLPLRDVLF  255 (379)
Q Consensus       230 v~d~~~~~~~~~~~~~~~~~i~~~~~  255 (379)
                      +.+.....  ...+..+...+..++|
T Consensus       393 ~~~~~g~~--~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       393 LVSTDGRF--RARLPLGNGDVREPAW  416 (417)
T ss_pred             EEECCCce--eeECCCCCCCcCCCCC
Confidence            66644322  2334333444555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.67  E-value=1.8e-13  Score=120.83  Aligned_cols=199  Identities=17%  Similarity=0.236  Sum_probs=133.7

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      .|.++|....   ....+..+...+...+|+|+|++|+.+..+   ..|++||+.+++....   ..+...+.+++|+|+
T Consensus       171 ~l~~~d~~g~---~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDGA---NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCCC---CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceEECCC
Confidence            5778887654   234444566678899999999999887643   4799999998864332   234556677999999


Q ss_pred             CCEEEEE-eCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEeccccccccccc
Q 016982          110 ENKFAVG-SGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIKEK  183 (379)
Q Consensus       110 ~~~l~~~-~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~  183 (379)
                      |+.|+.. +.++  .|++|++.++.    .+.+ ..+........|+|+++.|+..+. .+  .|.++|+          
T Consensus       245 g~~l~~~~~~~~~~~i~~~d~~~~~----~~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~----------  309 (417)
T TIGR02800       245 GSKLAVSLSKDGNPDIYVMDLDGKQ----LTRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA----------  309 (417)
T ss_pred             CCEEEEEECCCCCccEEEEECCCCC----EEEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC----------
Confidence            9977654 4444  47777777665    2333 344444557789999988876654 33  4666664          


Q ss_pred             cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC---eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc
Q 016982          184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM  260 (379)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~  260 (379)
                              ..++ ...+..+......+.|+|+|++++.++.++   .|.+||+.++..  ..+.. ........|+|+|+
T Consensus       310 --------~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~-~~~~~~p~~spdg~  377 (417)
T TIGR02800       310 --------DGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTD-TGLDESPSFAPNGR  377 (417)
T ss_pred             --------CCCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccC-CCCCCCceECCCCC
Confidence                    2222 233443445567889999999999887765   789999877542  33332 22345678999998


Q ss_pred             EEEE
Q 016982          261 VIGV  264 (379)
Q Consensus       261 ~l~~  264 (379)
                      .|+.
T Consensus       378 ~l~~  381 (417)
T TIGR02800       378 MILY  381 (417)
T ss_pred             EEEE
Confidence            7773

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=5.8e-14  Score=123.45  Aligned_cols=219  Identities=14%  Similarity=0.183  Sum_probs=136.4

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCCe--EE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDRN--SY   79 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--i~   79 (379)
                      +..+...+.+..|+|||+.|+..+.+   ..|++||+.+++.+.+..+.+   .....+|+|||+.|+. .+.++.  |.
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence            44556678899999999999877542   368889988874444443333   3457899999998765 455564  88


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCe--EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKT--VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  156 (379)
                      ++|+.+++....   ..+.......+|+|||+.|+..+. ++.  |+++|+.+++   . +.+ ..........+|+|||
T Consensus       290 ~~dl~tg~~~~l---t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~-~~L-t~~g~~~~~~~~SpDG  361 (448)
T PRK04792        290 VVDIATKALTRI---TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---V-SRL-TFEGEQNLGGSITPDG  361 (448)
T ss_pred             EEECCCCCeEEC---ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---E-EEE-ecCCCCCcCeeECCCC
Confidence            888888764332   234455678899999998877664 444  4444555444   2 222 1122223457899999


Q ss_pred             cEEEEeeC-CCeEEE--EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-C--eEEE
Q 016982          157 VFLATTST-DGKCRV--FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-S--MIYF  230 (379)
Q Consensus       157 ~~l~~~~~-d~~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~i~v  230 (379)
                      ++|+..+. ++...|  +|+                  ..++. ..+... .......|+|+|+.|+..+.+ +  .+++
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl------------------~~g~~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~  421 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDL------------------ETGAM-QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAA  421 (448)
T ss_pred             CEEEEEEecCCceEEEEEEC------------------CCCCe-EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            98877655 343444  554                  22222 222211 112345899999988776543 3  4777


Q ss_pred             EECCCCCceeeeeeeecCCeeeEEEec
Q 016982          231 VDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                      ++.....  ...+..+.+.+...+|+|
T Consensus       422 ~~~~G~~--~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        422 VSIDGRF--KARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EECCCCc--eEECcCCCCCcCCCccCC
Confidence            7864432  345554556677888887

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=1.9e-14  Score=115.25  Aligned_cols=250  Identities=11%  Similarity=0.076  Sum_probs=171.9

Q ss_pred             CCceEEEEEcCCC--CEEEEEeCCCeEEEEeccCCceeeeE----EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           54 DQIVSGIDWSVRS--NRIVTVSHDRNSYVWNQEGSEWVPTL----VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        54 ~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                      ...|..++|.-++  +.|...+.+..+..+.+....+....    .......+|..+...  ...|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            4567888887665  34555556667777777766544443    222334566666554  346778888999999998


Q ss_pred             ecCCc--eeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCC--CeEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982          128 EQENN--WWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTD--GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL  202 (379)
Q Consensus       128 ~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (379)
                      ..+..  ..+..   ......+..+.-+|.. ..+++|+..  ..+.+||+.                  ..+++.+-..
T Consensus       133 k~~d~hss~l~~---la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle------------------~~~qiw~aKN  191 (412)
T KOG3881|consen  133 KSGDLHSSKLIK---LATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE------------------QSKQIWSAKN  191 (412)
T ss_pred             cCCcccccccee---eecCCceeeeccCCCCCceEecCchhcccceeeeecc------------------cceeeeeccC
Confidence            85431  11111   2233556667666655 456668888  889999973                  2222221111


Q ss_pred             ---------CCcceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEE-EeCCCe
Q 016982          203 ---------SFSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGV-GFDCNP  270 (379)
Q Consensus       203 ---------~~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~d~~~  270 (379)
                               -.-+++++.|-|.  ...|+++..-+.+++||.+.+..++..+.....+++++...|+|++|.+ ...+.+
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence                     0235788899887  7889999999999999999888888888888899999999999998874 466677


Q ss_pred             EEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcc
Q 016982          271 MVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSR  350 (379)
Q Consensus       271 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  350 (379)
                      ..|+.+...   +..                       .                   .+.|-.+.|.++.++     |.
T Consensus       272 ~~FD~r~~k---l~g-----------------------~-------------------~~kg~tGsirsih~h-----p~  301 (412)
T KOG3881|consen  272 AKFDLRGGK---LLG-----------------------C-------------------GLKGITGSIRSIHCH-----PT  301 (412)
T ss_pred             heecccCce---eec-----------------------c-------------------ccCCccCCcceEEEc-----CC
Confidence            777765432   111                       0                   125677889999865     44


Q ss_pred             cceEEEeecCceEEEEeCCCcccccc
Q 016982          351 ITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       351 ~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                      .++||+||.|..|||+|+.+.+.+..
T Consensus       302 ~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  302 HPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             CceEEeeccceeEEEeecccchhhhh
Confidence            58999999999999999999665543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=2.8e-13  Score=119.20  Aligned_cols=198  Identities=17%  Similarity=0.158  Sum_probs=124.7

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      .|.++|....+   .+.+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++....   ....+......|+||
T Consensus       199 ~l~i~d~dG~~---~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l---t~~~g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDGYN---EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV---TSFPGINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCCCC---ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe---cCCCCCcCCeeECCC
Confidence            56777776642   23344556788899999999998876533   2588999988764332   222344457899999


Q ss_pred             CCEEEEE-eCCCe--EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCe--EEEEeccccccccccc
Q 016982          110 ENKFAVG-SGAKT--VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGK--CRVFSTFIKGVDIKEK  183 (379)
Q Consensus       110 ~~~l~~~-~~d~~--v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~  183 (379)
                      |+.|+.. +.++.  |+++|+.++.    .+.+ ..+.......+|+||++.|+..+. ++.  |.++|+          
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~----~~~l-t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl----------  337 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKA----LTRI-TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNL----------  337 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCC----eEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEEC----------
Confidence            9988764 55665  6666666654    2333 344555678899999988876654 444  444453          


Q ss_pred             cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC-CC--eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc
Q 016982          184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH-NS--MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM  260 (379)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~  260 (379)
                              ..++. ..+..........+|+|||++|+..+. ++  .|.++|+.++..  ..+... .......|+|||+
T Consensus       338 --------~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~~-~~d~~ps~spdG~  405 (448)
T PRK04792        338 --------ASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTST-RLDESPSVAPNGT  405 (448)
T ss_pred             --------CCCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccCC-CCCCCceECCCCC
Confidence                    22322 222222223345799999999887654 33  466678777652  233322 2233568999999


Q ss_pred             EEE
Q 016982          261 VIG  263 (379)
Q Consensus       261 ~l~  263 (379)
                      .|+
T Consensus       406 ~I~  408 (448)
T PRK04792        406 MVI  408 (448)
T ss_pred             EEE
Confidence            877

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=5.1e-13  Score=118.01  Aligned_cols=211  Identities=14%  Similarity=0.113  Sum_probs=133.7

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      .|.++|.+..   ....+..+...+...+|+|||+.|+..+.+   ..|.+|++.+++....   ....+.+....|+||
T Consensus       180 ~l~~~d~~g~---~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l---~~~~g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDGA---RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI---TNFEGLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCCC---CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc---cCCCCCcCCeEECCC
Confidence            4777777664   233444566788999999999998876643   3699999998864332   223445567899999


Q ss_pred             CCEEEEE-eCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEeccccccccccc
Q 016982          110 ENKFAVG-SGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIKEK  183 (379)
Q Consensus       110 ~~~l~~~-~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~  183 (379)
                      |+.|+.. ..++  .|+++|+.++.    .+.+ ..+........|+||++.++..+. ++  .|.++++          
T Consensus       254 G~~la~~~~~~g~~~Iy~~d~~~~~----~~~l-t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~----------  318 (430)
T PRK00178        254 GSKLAFVLSKDGNPEIYVMDLASRQ----LSRV-TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV----------  318 (430)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCC----eEEc-ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC----------
Confidence            9988754 4444  57777877765    2333 345555667899999988776654 34  4555554          


Q ss_pred             cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-C--eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc
Q 016982          184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-S--MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM  260 (379)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~  260 (379)
                              ..++. ..+...........|+|+|++|+..+.+ +  .|.++|+.++..  ..+.. ........|+|||+
T Consensus       319 --------~~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spdg~  386 (430)
T PRK00178        319 --------NGGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPNGT  386 (430)
T ss_pred             --------CCCCE-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccC-CCCCCCceECCCCC
Confidence                    22222 2222112223457899999999877643 3  588899887653  33332 22334678999999


Q ss_pred             EEEEE-e-CCCeEEEEec
Q 016982          261 VIGVG-F-DCNPMVFAAD  276 (379)
Q Consensus       261 ~l~~~-~-d~~~~i~~~~  276 (379)
                      .++.. . ++...++..+
T Consensus       387 ~i~~~~~~~g~~~l~~~~  404 (430)
T PRK00178        387 MLIYATRQQGRGVLMLVS  404 (430)
T ss_pred             EEEEEEecCCceEEEEEE
Confidence            88733 2 3334444433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=2.1e-13  Score=117.86  Aligned_cols=267  Identities=15%  Similarity=0.279  Sum_probs=183.5

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-------------eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-------------WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR   76 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   76 (379)
                      .....|++|+.+..++|+|+.||.+++..+.+..             ...-+++.+|...|.-+.|+.+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4567899999999999999999999999886531             223457899999999999999999999999999


Q ss_pred             eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC
Q 016982           77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  156 (379)
                      .|.+|-+-.+.+...+.....++.|.+++|+.+|..++..-.||.|.+=.++....|.  +.+ .+  .....+.|++|.
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeL-kg--~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KEL-KG--QLLAHVLWSEDL  168 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhc-ch--heccceeecccH
Confidence            9999999999887777656677889999999999999999999998876655443221  111 00  112244555555


Q ss_pred             cEEEEeeCCCeEEEEe--------------ccc-----------cccccccccC-CCccC------------------Cc
Q 016982          157 VFLATTSTDGKCRVFS--------------TFI-----------KGVDIKEKKE-GTSSD------------------TK  192 (379)
Q Consensus       157 ~~l~~~~~d~~i~v~d--------------~~~-----------~~~~~~~~~~-~~~~~------------------~~  192 (379)
                      +.++.+-.+|.+.+||              +.+           .++.....+- +..++                  ..
T Consensus       169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            5444444444444444              010           0000000000 00000                  01


Q ss_pred             ccceEEEeecCCcceEEEEECCCCCEEEEEcCC---------CeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982          193 FGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---------SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       193 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                      ...++. +. ..-.+....|+++|..|+.++.+         +.|++|..-.  ..+.+++..+..|++++|-..|-.++
T Consensus       249 D~~Pvv-~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G--~i~gtlkvpg~~It~lsWEg~gLriA  324 (1189)
T KOG2041|consen  249 DPEPVV-VD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG--HIVGTLKVPGSCITGLSWEGTGLRIA  324 (1189)
T ss_pred             CCCCeE-Ee-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch--hheEEEecCCceeeeeEEcCCceEEE
Confidence            111111 11 12357889999999999998754         3567775433  24577777788999999998888999


Q ss_pred             EEeCCCeEEEEecCCCcEEEEE
Q 016982          264 VGFDCNPMVFAADETGIWTFIK  285 (379)
Q Consensus       264 ~~~d~~~~i~~~~~~~~~~~~~  285 (379)
                      .+-|+.+++-+......|-+..
T Consensus       325 ~AvdsfiyfanIRP~ykWgy~e  346 (1189)
T KOG2041|consen  325 IAVDSFIYFANIRPEYKWGYIE  346 (1189)
T ss_pred             EEecceEEEEeecccceEEEee
Confidence            8899999988888888887654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.1e-12  Score=114.50  Aligned_cols=223  Identities=13%  Similarity=0.104  Sum_probs=134.1

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCE--E-EEEeCC--CeEEEEeccCCceeeeEEeecCCCceeEEEE
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNR--I-VTVSHD--RNSYVWNQEGSEWVPTLVILRLNRAALCVQW  106 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  106 (379)
                      ..|.+.|.+.++.   +.+......+.+.+|+|||+.  + ++...+  ..|.+.++.+++....   ....+.....+|
T Consensus       165 ~~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l---t~~~g~~~~p~w  238 (428)
T PRK01029        165 GELWSVDYDGQNL---RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI---LALQGNQLMPTF  238 (428)
T ss_pred             ceEEEEcCCCCCc---eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe---ecCCCCccceEE
Confidence            3677777776532   334444556778899999975  3 233333  3588889888864333   234455667899


Q ss_pred             CCCCCEEEEEeC-CC--eE--EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEecccccccc
Q 016982          107 SPKENKFAVGSG-AK--TV--CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDI  180 (379)
Q Consensus       107 ~~~~~~l~~~~~-d~--~v--~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~  180 (379)
                      +|||+.|+..+. +|  .+  .+|++..+......+.. ..........+|+|||+.|+..+ .+|...+|.+.     .
T Consensus       239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~-----~  312 (428)
T PRK01029        239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ-----I  312 (428)
T ss_pred             CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE-----C
Confidence            999998887653 23  23  33555542111122222 23333446789999999888765 46665666431     0


Q ss_pred             ccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                                ...+.....+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.  ..+......+..+.|+|
T Consensus       313 ----------~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSp  380 (428)
T PRK01029        313 ----------DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAI  380 (428)
T ss_pred             ----------cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECC
Confidence                      01112233344444556789999999998876543   4799999987753  33333334567899999


Q ss_pred             CCcEEEE-Ee-C--CCeEEEEecCC
Q 016982          258 EKMVIGV-GF-D--CNPMVFAADET  278 (379)
Q Consensus       258 ~~~~l~~-~~-d--~~~~i~~~~~~  278 (379)
                      ||+.|+. +. .  ..+.+++.+..
T Consensus       381 DG~~L~f~~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        381 DSLHLVYSAGNSNESELYLISLITK  405 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCC
Confidence            9998773 32 2  23445554443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=3.1e-11  Score=96.67  Aligned_cols=236  Identities=10%  Similarity=0.048  Sum_probs=152.8

Q ss_pred             CCeEEEEEecCCc--eEEEEEeccCCCceEEEEEcCCCCEEEEEeC---CCeEEEEeccC--CceeeeEEeecCCCceeE
Q 016982           31 NNEVHIYKLIQEK--WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH---DRNSYVWNQEG--SEWVPTLVILRLNRAALC  103 (379)
Q Consensus        31 dg~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~--~~~~~~~~~~~~~~~v~~  103 (379)
                      +.-|++|++.+..  ...+. +-.+....+-|+|+|+.+.|.++-.   +|.|.-|.++.  |++...-.......+...
T Consensus        15 s~gI~v~~ld~~~g~l~~~~-~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQ-LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhh-hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            4679999998542  22222 2335567789999999999988764   46687777765  443222221222344588


Q ss_pred             EEECCCCCEEEEEeC-CCeEEEEEeecCC-ceeEEEEEeecCCcC----------EEEEEEcCCCcEEEEeeC-CCeEEE
Q 016982          104 VQWSPKENKFAVGSG-AKTVCICYYEQEN-NWWVSKLIRKRHDSS----------VTSVAWHPNNVFLATTST-DGKCRV  170 (379)
Q Consensus       104 ~~~~~~~~~l~~~~~-d~~v~i~~~~~~~-~~~~~~~~~~~~~~~----------v~~~~~~p~~~~l~~~~~-d~~i~v  170 (379)
                      ++++++|++++++.. .|.|.++-++... .+.....  ..|.+.          +....+.|++++|++..- ...|.+
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~--~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV--VKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceee--eecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            999999999999876 6789998886633 2222222  234444          888999999999988763 346899


Q ss_pred             EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeeee---
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAFR---  246 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~---  246 (379)
                      |++......              ......+ ......+.+.|+|++++..... -+++|.+|........+..++.+   
T Consensus       172 y~~~dg~L~--------------~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl  236 (346)
T COG2706         172 YDLDDGKLT--------------PADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL  236 (346)
T ss_pred             EEcccCccc--------------ccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence            987311100              0001111 2244578999999999876654 68999999887743223333321   


Q ss_pred             ------cCCeeeEEEecCCcEEEEEeCC--CeEEEEecCC-CcEEEE
Q 016982          247 ------DLPLRDVLFVSEKMVIGVGFDC--NPMVFAADET-GIWTFI  284 (379)
Q Consensus       247 ------~~~i~~~~~s~~~~~l~~~~d~--~~~i~~~~~~-~~~~~~  284 (379)
                            .....++..++||++|.++..+  .|.+|..+.. +...+.
T Consensus       237 P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~  283 (346)
T COG2706         237 PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV  283 (346)
T ss_pred             ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE
Confidence                  2346778999999999987544  6777877765 434443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.59  E-value=2e-12  Score=100.15  Aligned_cols=243  Identities=14%  Similarity=0.119  Sum_probs=159.9

Q ss_pred             ceeEEEeCCCCcEEEEEec------------CCeEEEEEecCCceEEEEEec-cCCCceEEEEEcC---CCC-EEEEEeC
Q 016982           12 CITCHAWSPDHAMVAFCPN------------NNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSV---RSN-RIVTVSH   74 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~------------dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~~-~l~~~~~   74 (379)
                      ++.+++-.+  +.||+|++            .|.+.+|++...+..+..+++ .....+..+.|.-   +|. .++-+..
T Consensus        16 ~~C~l~~~~--~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a   93 (339)
T KOG0280|consen   16 PICCLCHTR--NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHA   93 (339)
T ss_pred             Ccccccccc--ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccc
Confidence            444444333  37777743            467889998875433322222 1234566777753   344 4566677


Q ss_pred             CCeEEEEeccCCceeeeEEeec----CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE
Q 016982           75 DRNSYVWNQEGSEWVPTLVILR----LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV  150 (379)
Q Consensus        75 d~~i~vw~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~  150 (379)
                      .|.|.++..........+....    ......++.|++.+..++++-.+|.+.+.+..... ....+.. +.|.-++.-.
T Consensus        94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~w-k~He~E~Wta  171 (339)
T KOG0280|consen   94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTW-KVHEFEAWTA  171 (339)
T ss_pred             cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccc-cccceeeeee
Confidence            8899999876543222221110    01135678899999999999999999854443332 1112234 7898899999


Q ss_pred             EEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE-eecCCcceEEEEECC-CCCEEEEEcCCCe
Q 016982          151 AWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ-LDLSFSWAFGVKWSP-SGNTLAYVGHNSM  227 (379)
Q Consensus       151 ~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp-~~~~l~~~~~d~~  227 (379)
                      .|+... +.+.+|+.|+.+..||++                 -.++.+.. .+.|...|.++.-+| .+.++++|+.|..
T Consensus       172 ~f~~~~pnlvytGgDD~~l~~~D~R-----------------~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~  234 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGGDDGSLSCWDIR-----------------IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC  234 (339)
T ss_pred             ecccCCCceEEecCCCceEEEEEec-----------------CCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence            997644 789999999999999982                 12333333 456778899998887 5889999999999


Q ss_pred             EEEEECCCCCceeeeeeeecCCeeeEEEecC--CcEEEEEeCCCeEEEEec
Q 016982          228 IYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE--KMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       228 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~d~~~~i~~~~  276 (379)
                      |++||.++..+.+.... -.+.|+.+.++|.  +++|+++.-+...+.+..
T Consensus       235 i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~  284 (339)
T KOG0280|consen  235 IRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS  284 (339)
T ss_pred             eeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence            99999997654444333 3578999999994  456666666666665544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.59  E-value=2.6e-14  Score=123.61  Aligned_cols=303  Identities=13%  Similarity=0.139  Sum_probs=200.7

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCC--CEEEEEeCCCeEEEEeccC
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRS--NRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~   85 (379)
                      ..+++.++..+|.|+-+|.+++-| +.+.|+... +.+.+-+.. ..-.|-...|+|..  .+-++......-.+|++..
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p-~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~  100 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDP-FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK  100 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcC-eEEEeccCC-CCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence            357888999999999999988754 666677654 122222221 12246678888764  3434444445567898854


Q ss_pred             C-ceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           86 S-EWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        86 ~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      . .....+...+|...++.+.|+|. ...+++++.|-.+..||++....  ..... .........++|+.....+.+.+
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~-~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYST-SSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeee-ecccccCceeeecccCcchhhhc
Confidence            3 22234556789999999999995 46889999999999999998763  12222 34445567889987665566667


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      ....|++||+                 ..-+.++..+.+|...|..++|.. ....+.+++.|++|++||..+.......
T Consensus       178 hg~~i~vwd~-----------------r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~  240 (1081)
T KOG0309|consen  178 HGNDIFVWDL-----------------RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR  240 (1081)
T ss_pred             cCCceEEEec-----------------cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence            7888999997                 355677888888888899999886 3456788899999999998765443344


Q ss_pred             eeeecCCeeeEEEecC--CcEEEE-EeCCCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          243 VAFRDLPLRDVLFVSE--KMVIGV-GFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~--~~~l~~-~~d~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      ......+|+.-.+.|-  |.++.- -.+..+.++..++ ...|+.....                 ....          
T Consensus       241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~-----------------~pVh----------  293 (1081)
T KOG0309|consen  241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN-----------------TPVH----------  293 (1081)
T ss_pred             eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCC-----------------ccee----------
Confidence            4445778888888884  444442 2222333333322 2234332211                 1112          


Q ss_pred             cccccccccccccccccceeeeeeeccc---C--CcccceEEEeecCceEEEEeCCC
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREA---G--SSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~--~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                .+.||.+.|....|-...   +  +.+.-.|+|-|.|..+|+|.+.+
T Consensus       294 ----------~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  294 ----------TFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ----------eecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                      336999988877632211   1  12334899999999999999875

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=1.1e-13  Score=124.15  Aligned_cols=274  Identities=18%  Similarity=0.164  Sum_probs=180.1

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc----eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK----WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      |-.++++.++-.  .+|..|. .-.|.+||+..+.    ......+..|...=.-.   -.+.+++++..-+.+..=+..
T Consensus         6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~   79 (967)
T KOG0974|consen    6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEAS   79 (967)
T ss_pred             ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchh
Confidence            345566666644  6776664 4589999998762    11222223341000000   112345555544434332222


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-----CEEEEEEcCCCcEE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-----SVTSVAWHPNNVFL  159 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~l  159 (379)
                      ... ..     .....+....+..+...++.++.++.+-+||.....   +...+  .+..     ...-+-++++.-++
T Consensus        80 ~~~-~~-----~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~---~~~~i--~~~er~~l~~~~~~g~s~~~~~i  148 (967)
T KOG0974|consen   80 NQI-IE-----RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSS---VLSKI--QSDERCTLYSSLIIGDSAEELYI  148 (967)
T ss_pred             hhh-hh-----hccccccccchhhhcceEEEEEcCceEEEEecccCc---eehhc--CCCceEEEEeEEEEeccCcEEEE
Confidence            111 11     112334445556677888999999999999987765   22222  2222     12233456667789


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      ++|+.-+.|.+|+..                 ....++ .+.+|.+.+.++.|+-||+++++.|.|.++++|++.+.+..
T Consensus       149 ~~gsv~~~iivW~~~-----------------~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~  210 (967)
T KOG0974|consen  149 ASGSVFGEIIVWKPH-----------------EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL  210 (967)
T ss_pred             EeccccccEEEEecc-----------------ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc
Confidence            999999999999862                 122222 57899999999999999999999999999999999998876


Q ss_pred             eeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCc
Q 016982          240 AQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVG  319 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
                      ....-+|...++.++|.|+ +++.++.|.+.++|..+... |..                          |         
T Consensus       211 ~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~-l~~--------------------------y---------  253 (967)
T KOG0974|consen  211 GCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQ-LEV--------------------------Y---------  253 (967)
T ss_pred             CcccccccceeEEEEeccc-eeEEeccceEEEEEecccce-ehh--------------------------h---------
Confidence            6566689999999999998 77778999999999544321 221                          1         


Q ss_pred             cccccccccccccc-ccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          320 NDAVESSRTRGGTH-VNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       320 ~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                 .+| ...|..++ .+++.    ..++|++.||.+++|++..
T Consensus       254 -----------~~h~g~~iw~~~-~~~~~----~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  254 -----------DEHSGKGIWKIA-VPIGV----IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -----------hhhhhcceeEEE-EcCCc----eEEEeeccCcchhhhhhhc
Confidence                       345 34688888 55554    7999999999999999875

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.57  E-value=3.1e-12  Score=108.27  Aligned_cols=193  Identities=11%  Similarity=0.093  Sum_probs=150.8

Q ss_pred             CCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEc------C--------------CCCEEEEEeCCCe
Q 016982           19 SPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWS------V--------------RSNRIVTVSHDRN   77 (379)
Q Consensus        19 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~------~--------------~~~~l~~~~~d~~   77 (379)
                      .|-..++|....||.+++|+...++......-.. -.+..++..|.      |              +-..|+-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3456799999999999999999874222221111 12334444442      2              1236777888899


Q ss_pred             EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      |.+|++..++....+....|.+.|.++.++.+-..|.+++.|+.+..|+.....   ..+.. ......+.+++.+||+.
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~---~~~~~-~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV---IIRIW-KEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce---eeeee-ccCCCccceEEEcCCCC
Confidence            999999999988888878899999999999999999999999999999998876   44444 66777889999999999


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-----CCEEEEEc-CCCeEEEE
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-----GNTLAYVG-HNSMIYFV  231 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~-~d~~i~v~  231 (379)
                      .+++++  +.|++||+                  ++.+.+..|.+|.++|+++.|-.+     |.+++++. .+..+.+|
T Consensus       158 ~l~~as--~~ik~~~~------------------~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDI------------------ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             EEEecc--ceEEEEEc------------------cCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            999886  67999998                  789999999999999999999886     77776643 44556777


Q ss_pred             ECCC
Q 016982          232 DDVG  235 (379)
Q Consensus       232 d~~~  235 (379)
                      -+..
T Consensus       218 ~v~~  221 (541)
T KOG4547|consen  218 VVEK  221 (541)
T ss_pred             EEEc
Confidence            5443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.55  E-value=3.6e-13  Score=120.89  Aligned_cols=198  Identities=16%  Similarity=0.117  Sum_probs=154.0

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc----eEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI----VSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      .+.|....+.-+.+.++.++.+..+.+||...+  .....++.....    ..-+.++++.-++++|+.-+.|.+|+...
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~--~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~  164 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNS--SVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE  164 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccC--ceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence            344445555556678888888899999999876  344444432221    12234566777899999999999999884


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      .+ ++. ...+|.+.+.++.|+.||.++++.++|.++++|++++.+..  .... .+|...+..+.|.|+  .+++++.|
T Consensus       165 dn-~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--~~~~-fgHsaRvw~~~~~~n--~i~t~ged  237 (967)
T KOG0974|consen  165 DN-KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--GCTG-FGHSARVWACCFLPN--RIITVGED  237 (967)
T ss_pred             cC-Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc--Cccc-ccccceeEEEEeccc--eeEEeccc
Confidence            33 233 45789999999999999999999999999999999998742  1123 699999999999987  89999999


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCC-cceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      .++++|+.                   .+..+..+..|. ..++.++..++...+++++.|+.+++||+..
T Consensus       238 ctcrvW~~-------------------~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  238 CTCRVWGV-------------------NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEEEec-------------------ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99999974                   355555676664 4689999999999999999999999998754

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.54  E-value=7.4e-12  Score=106.00  Aligned_cols=190  Identities=12%  Similarity=0.127  Sum_probs=146.9

Q ss_pred             CCCCEEEEEeCCCeEEEEeccCCceeeeEEeecC-CCceeEEEEC------C--------------CCCEEEEEeCCCeE
Q 016982           64 VRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL-NRAALCVQWS------P--------------KENKFAVGSGAKTV  122 (379)
Q Consensus        64 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~------~--------------~~~~l~~~~~d~~v  122 (379)
                      |...++|....||.+++|+...++....+....+ .+...+..|.      |              +-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4457899999999999999998876555543322 2344444442      2              22357778889999


Q ss_pred             EEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          123 CICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       123 ~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      .+|+...++   +...+. ..|.+.|.++.++.+-..|.+++.|+.+..|+.                  .....+..+.
T Consensus        83 ~~ys~~~g~---it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~------------------~~~~~~~~~~  141 (541)
T KOG4547|consen   83 LLYSVAGGE---ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE------------------KEKVIIRIWK  141 (541)
T ss_pred             EEEEecCCe---EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec------------------ccceeeeeec
Confidence            999998887   444443 689999999999988899999999999999996                  6667777777


Q ss_pred             cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecC-----CcEEEE--EeCCCeEEEE
Q 016982          202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE-----KMVIGV--GFDCNPMVFA  274 (379)
Q Consensus       202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~--~~d~~~~i~~  274 (379)
                      .....+.+++.+|||..|++++  ++|++||+.+.+ ++..+.+|.++|.+++|.-+     |.++.+  ..+..+.+|.
T Consensus       142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke-vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE-VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             cCCCccceEEEcCCCCEEEecc--ceEEEEEccCce-EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            7778899999999999999875  689999999876 66999999999999999876     666653  3455566665


Q ss_pred             ecC
Q 016982          275 ADE  277 (379)
Q Consensus       275 ~~~  277 (379)
                      .+.
T Consensus       219 v~~  221 (541)
T KOG4547|consen  219 VEK  221 (541)
T ss_pred             EEc
Confidence            543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.54  E-value=8.6e-13  Score=104.35  Aligned_cols=246  Identities=15%  Similarity=0.177  Sum_probs=162.8

Q ss_pred             CcceeEEEeCCCCc--EEEEEecCCeEEEEEecCCceEE---------------------------------EEE-eccC
Q 016982           10 AQCITCHAWSPDHA--MVAFCPNNNEVHIYKLIQEKWEK---------------------------------LHV-LQKH   53 (379)
Q Consensus        10 ~~~i~~~~~s~~~~--~l~~~~~dg~i~i~~~~~~~~~~---------------------------------~~~-~~~~   53 (379)
                      ...|..+.|.++++  .++..+.|.+|++|.+.....+.                                 .+. -.+|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            46789999988664  56667789999999986432111                                 011 1347


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeeEEeecC-----CCceeEEEECCC-CCEEEEEeCCCeEEEEE
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-WVPTLVILRL-----NRAALCVQWSPK-ENKFAVGSGAKTVCICY  126 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~  126 (379)
                      +--|+++.++.|.+.++++. |-.|.+|+++--. .-....+.++     ..-|++..|+|. -+.++..+..|+|++.|
T Consensus       164 tyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            77899999999999888864 6789999987432 2222223333     246889999994 56888888899999999


Q ss_pred             eecCCceeE-EEEE-----------eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc
Q 016982          127 YEQENNWWV-SKLI-----------RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG  194 (379)
Q Consensus       127 ~~~~~~~~~-~~~~-----------~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  194 (379)
                      ++....... .+.+           ...--..|.++.|+++|+++++-.. -+|++||+.                 ...
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n-----------------me~  304 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN-----------------MEA  304 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc-----------------ccC
Confidence            985431000 1111           0222346889999999999997643 479999983                 334


Q ss_pred             ceEEEeecCC------------cc---eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee--------------
Q 016982          195 EQILQLDLSF------------SW---AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF--------------  245 (379)
Q Consensus       195 ~~~~~~~~~~------------~~---v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--------------  245 (379)
                      +++.+++.|.            ..   -..++|+-++.++++|+.....++|+...+......+..              
T Consensus       305 ~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~  384 (433)
T KOG1354|consen  305 KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLR  384 (433)
T ss_pred             CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccce
Confidence            5555555442            11   246889999999999999999999985443211111110              


Q ss_pred             ------e-------------cCCeeeEEEecCCcEEEEEeCCCeEEEE
Q 016982          246 ------R-------------DLPLRDVLFVSEKMVIGVGFDCNPMVFA  274 (379)
Q Consensus       246 ------~-------------~~~i~~~~~s~~~~~l~~~~d~~~~i~~  274 (379)
                            .             ...+...+|+|....+|++..+.+++|.
T Consensus       385 ~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyif~  432 (433)
T KOG1354|consen  385 LVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYIFQ  432 (433)
T ss_pred             eeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEEec
Confidence                  0             0114456788888888877777777664

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.51  E-value=1.2e-12  Score=103.56  Aligned_cols=254  Identities=13%  Similarity=0.177  Sum_probs=175.5

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeE
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN-QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV  122 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v  122 (379)
                      ...++.++||.+.+++...-|...-+++.+.|.++++|- .+.++.-+.+. .....+++++.++++...|++|-.+|++
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceE
Confidence            356777889999999988888888899999999999995 34455444442 2346889999999999999999999999


Q ss_pred             EEEEeecCCce-eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          123 CICYYEQENNW-WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       123 ~i~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      .-+.+...-+. ...+.. ..|...+..+-|+-...++++.+.|..+. |...                 +.+..+....
T Consensus        93 tefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~-----------------e~~~~lg~Y~  153 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT-----------------ESGNRLGGYN  153 (404)
T ss_pred             EEEEhhhhhhhcchhhhh-hhhhcceeeEEecCCceeEEEeccccceE-EEee-----------------ccCCcccceE
Confidence            87765432210 012333 68999999999998889999999887764 4431                 2232221111


Q ss_pred             cCCcceEEEEECCCCCEEEEEcCCCeEEEEECC-CCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV-GPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      . ...-+.+.+.-.  +...|...|.|....+. +...++..+.+|..++.++.|.+..++|. +..|..+.+|+.....
T Consensus       154 ~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  154 F-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             e-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence            0 000111111111  44555556665555432 33446788889999999999999776666 6678899999876543


Q ss_pred             cEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeec
Q 016982          280 IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGL  359 (379)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~  359 (379)
                      ....                                             .+.+|.+.|..+. +-+.-    +.+.+++.
T Consensus       231 g~~~---------------------------------------------el~gh~~kV~~l~-~~~~t----~~l~S~~e  260 (404)
T KOG1409|consen  231 GTAY---------------------------------------------ELQGHNDKVQALS-YAQHT----RQLISCGE  260 (404)
T ss_pred             ceee---------------------------------------------eeccchhhhhhhh-hhhhh----eeeeeccC
Confidence            2222                                             3358999999888 44333    79999999


Q ss_pred             CceEEEEeCCC
Q 016982          360 DGKIVTWDLES  370 (379)
Q Consensus       360 Dg~v~iW~~~~  370 (379)
                      ||.|.+|+++.
T Consensus       261 dg~i~~w~mn~  271 (404)
T KOG1409|consen  261 DGGIVVWNMNV  271 (404)
T ss_pred             CCeEEEEeccc
Confidence            99999999975

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=6.3e-11  Score=99.87  Aligned_cols=285  Identities=15%  Similarity=0.247  Sum_probs=178.2

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-----C-----CCeEE
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-----H-----DRNSY   79 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~-----d~~i~   79 (379)
                      ..+.+..++|++|+++|.+. +..++|++..+..  .+.+...  ..+.++.|+|-+++|.+--     .     .-.+.
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~--~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~  108 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK--VVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL  108 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc--EEEEecc--ceeeeeeecccccccccccccccccCCCCCCCcee
Confidence            34567788999999999875 5799999998873  3322222  2678999999999987631     1     23588


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC--c
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN--V  157 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~  157 (379)
                      +|+++++.....+.. .... -++..|++|..+.+--. .+.+++|+......  ...   .-|...+..+.++|.+  .
T Consensus       109 v~~vet~~~~s~~q~-k~Q~-~W~~qfs~dEsl~arlv-~nev~f~~~~~f~~--~~~---kl~~~~i~~f~lSpgp~~~  180 (566)
T KOG2315|consen  109 VYNVETGVQRSQIQK-KMQN-GWVPQFSIDESLAARLV-SNEVQFYDLGSFKT--IQH---KLSVSGITMLSLSPGPEPP  180 (566)
T ss_pred             eeeeccceehhheeh-hhhc-Ccccccccchhhhhhhh-cceEEEEecCCccc--eee---eeeccceeeEEecCCCCCc
Confidence            999999643333322 2222 26889999876544332 46799998877442  222   3467789999999974  4


Q ss_pred             EEEE-----eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE-EEEc--C-----
Q 016982          158 FLAT-----TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL-AYVG--H-----  224 (379)
Q Consensus       158 ~l~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~--~-----  224 (379)
                      .+++     .+.-+.++||.....               .....+..-......-..+.|++-|.-| +.++  -     
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~---------------~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~  245 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEE---------------GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA  245 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccc---------------cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence            4443     455678999975100               0001111111112223467888866532 2222  1     


Q ss_pred             ----CCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE---eCCCeEEEEecCCCcEEEEEEecccccCCCCC
Q 016982          225 ----NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG---FDCNPMVFAADETGIWTFIKFLDERKTSSSGP  297 (379)
Q Consensus       225 ----d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  297 (379)
                          ..+++++++.+.. ..-.+. ..+||.++.|+|+|+-+++.   .-..+.+|+.+..-..++              
T Consensus       246 SYYGEq~Lyll~t~g~s-~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df--------------  309 (566)
T KOG2315|consen  246 SYYGEQTLYLLATQGES-VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF--------------  309 (566)
T ss_pred             cccccceEEEEEecCce-EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC--------------
Confidence                3478888887433 222222 37899999999999765533   344677777655322221              


Q ss_pred             ccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecC---ceEEEEeCCCcccc
Q 016982          298 KYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLD---GKIVTWDLESQEDL  374 (379)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~D---g~v~iW~~~~~~~~  374 (379)
                                                         -.++=+++. |++.|    ++|+-+|-+   |.|-|||+.+.+++
T Consensus       310 -----------------------------------~egpRN~~~-fnp~g----~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  310 -----------------------------------PEGPRNTAF-FNPHG----NIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             -----------------------------------CCCCccceE-ECCCC----CEEEEeecCCCCCceEEEeccchhhc
Confidence                                               223334555 88776    888888754   89999999998777


Q ss_pred             ccCC
Q 016982          375 LNYH  378 (379)
Q Consensus       375 ~~~~  378 (379)
                      .++.
T Consensus       350 ~~~~  353 (566)
T KOG2315|consen  350 AKFK  353 (566)
T ss_pred             cccc
Confidence            6654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.50  E-value=1.6e-12  Score=101.63  Aligned_cols=264  Identities=13%  Similarity=0.134  Sum_probs=168.1

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc---eEEEEEeccCCC------------ceEEEEEcCCC--CEEEEE
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK---WEKLHVLQKHDQ------------IVSGIDWSVRS--NRIVTV   72 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~------------~v~~~~~~~~~--~~l~~~   72 (379)
                      .+.|+++.|...|.||++|...|.|.+|.-....   .+....+++|..            .|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4689999999999999999888999999876542   334445666653            47788887654  456666


Q ss_pred             eCCCeEEEEeccCCcee-----------------------------------------eeEEeecCCCceeEEEECCCCC
Q 016982           73 SHDRNSYVWNQEGSEWV-----------------------------------------PTLVILRLNRAALCVQWSPKEN  111 (379)
Q Consensus        73 ~~d~~i~vw~~~~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~~~~~~  111 (379)
                      +.|++|++|.+......                                         +.+....|.--+.+++|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            78999999987433100                                         0011134556678899998877


Q ss_pred             EEEEEeCCCeEEEEEeecCCceeEEEEEeecC-----CcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccC
Q 016982          112 KFAVGSGAKTVCICYYEQENNWWVSKLIRKRH-----DSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       112 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  185 (379)
                      .++++. |-.|.+|+++......-..-+ .+|     ...|++..|+|.. +.+...+..|.|++-|++....=..... 
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDi-KP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k-  262 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDI-KPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK-  262 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEec-cCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh-
Confidence            776654 678999998765531111112 233     2467889999965 6777788899999998731110000000 


Q ss_pred             CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec------------CCe---
Q 016982          186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD------------LPL---  250 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------------~~i---  250 (379)
                       .......+-...-+..-...|..+.|+++|+++++-+ --++++||.+..+.++.++..|.            ..|   
T Consensus       263 -lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         263 -LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             -hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence             0000000001111222235688999999999998643 46899999998877777775442            122   


Q ss_pred             eeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982          251 RDVLFVSEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       251 ~~~~~s~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      ..+.||.|.+.+. +++.+..-++..+..
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             EEEEecCCcccccccccccceeeeccccC
Confidence            3478887766554 666777777765443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.49  E-value=1.5e-09  Score=90.52  Aligned_cols=265  Identities=11%  Similarity=0.010  Sum_probs=151.4

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC----------CCeEEEEeccCCceeeeEEeecC----
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH----------DRNSYVWNQEGSEWVPTLVILRL----   97 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~~~~~~----   97 (379)
                      +.|.+.|..+.  +.+..+..-..+- .+ ++||++.|+.+..          +..|.+||..+.+.+..+.+...    
T Consensus        27 ~~v~ViD~~~~--~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~  102 (352)
T TIGR02658        27 TQVYTIDGEAG--RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL  102 (352)
T ss_pred             ceEEEEECCCC--EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence            79999999987  6666666543332 34 9999998877654          67899999999987776654221    


Q ss_pred             -CCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecc
Q 016982           98 -NRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTF  174 (379)
Q Consensus        98 -~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~  174 (379)
                       ......++++|||+++++...  +..|.+.|+.+++   ....+..  .+...-...+++..+  +-+.||......+.
T Consensus       103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k---vv~ei~v--p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d  175 (352)
T TIGR02658       103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA---FVRMMDV--PDCYHIFPTANDTFF--MHCRDGSLAKVGYG  175 (352)
T ss_pred             ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc---EEEEEeC--CCCcEEEEecCCccE--EEeecCceEEEEec
Confidence             123347899999999998763  6889999999887   4444411  111111222222211  11234443333221


Q ss_pred             ccccccccccCCCccCCcccceE-EE---eecCCcce-EEEEECC-CCCEEEEEcCCCeEEEEECCCCCc----eeeeee
Q 016982          175 IKGVDIKEKKEGTSSDTKFGEQI-LQ---LDLSFSWA-FGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSP----LAQNVA  244 (379)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~v-~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~  244 (379)
                                       ..++.. ..   +.....++ ....|.+ +|+++....+ |.|.+.|+.....    ....+.
T Consensus       176 -----------------~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~  237 (352)
T TIGR02658       176 -----------------TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT  237 (352)
T ss_pred             -----------------CCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecc
Confidence                             111100 00   11100000 1114455 8888877655 9999999654321    111111


Q ss_pred             e-------ecCCeeeEEEecCCcEEEEEeC-----------CCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccc
Q 016982          245 F-------RDLPLRDVLFVSEKMVIGVGFD-----------CNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEA  306 (379)
Q Consensus       245 ~-------~~~~i~~~~~s~~~~~l~~~~d-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (379)
                      .       ......-++++++++.+.....           +.+.+++...   ++....+                   
T Consensus       238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---~kvi~~i-------------------  295 (352)
T TIGR02658       238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---GKRLRKI-------------------  295 (352)
T ss_pred             ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC---CeEEEEE-------------------
Confidence            1       1222344899998876664321           1233333222   1222211                   


Q ss_pred             cceeeccccccCcccccccccccccccccceeeeeeecccCCcccc-eEE-EeecCceEEEEeCCCccccccC
Q 016982          307 FGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT-RFT-TSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-~l~-t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                                             ..|  ..+..++ +++|+    + +|+ +...++.|.+.|..+++.++.+
T Consensus       296 -----------------------~vG--~~~~~ia-vS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       296 -----------------------ELG--HEIDSIN-VSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             -----------------------eCC--CceeeEE-ECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                                   123  3677888 88877    4 555 5557899999999999888765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.49  E-value=5.8e-13  Score=125.74  Aligned_cols=200  Identities=12%  Similarity=0.146  Sum_probs=154.5

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      +.++-..|.++.=+|...+.++|+.||.|++|....+  ..+..++ .....|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence            3455678888888999899999999999999998876  3333332 223789999999999999999999999999987


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEe---CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGS---GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ..   +.+....|.....++.|-.  ..+++++   .++.+.+||........+..   ..|.+.++++++.|..+.|++
T Consensus      2282 pk---~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2282 PK---PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred             Cc---ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEEEcCcceEEEe
Confidence            32   4455567888888888874  5666654   37889999976655322332   679999999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      |+.+|.|++||+                  +..+.++.++.         ++ ...++++++..|.++||++.... ++.
T Consensus      2354 ggr~G~v~l~D~------------------rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~-ll~ 2404 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDI------------------RQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG-LLH 2404 (2439)
T ss_pred             cCCcCcEEEeeh------------------HHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc-hhh
Confidence            999999999997                  44455544433         44 56789999999999999988763 334


Q ss_pred             eee
Q 016982          242 NVA  244 (379)
Q Consensus       242 ~~~  244 (379)
                      .+.
T Consensus      2405 ~~p 2407 (2439)
T KOG1064|consen 2405 TFP 2407 (2439)
T ss_pred             cCc
Confidence            443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.48  E-value=1.5e-11  Score=95.32  Aligned_cols=238  Identities=14%  Similarity=0.084  Sum_probs=158.4

Q ss_pred             cceeEEEeCC---CCc-EEEEEecCCeEEEEEecCCceEEEEEeccCC------CceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982           11 QCITCHAWSP---DHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD------QIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus        11 ~~i~~~~~s~---~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      +.+..+.|..   +|. .++-+-..|.|.+|.....  +....|.+-.      ....++.|++.+..++++..+|.+.+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~  147 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG  147 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence            4455666653   444 4566667899999987654  3333333221      13457889999999999999999986


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVF  158 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~  158 (379)
                      -+..............|.-+++...|+. +.+.+.+|+.|+.+..||++....+ +.... ..|...|.++.-+| .+.+
T Consensus       148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~-i~~n~-kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF-IWHNS-KVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce-eeecc-eeeecceEEEecCCCCCce
Confidence            6665555444444577888999999986 5578999999999999999955432 22222 56888899998876 4689


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC--CCEEEEEcCCCeEEEEECCCC
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      +++|++|-.|++||.+                 .-++++..-.. .+.|+.+.++|.  +..|+++- -.-.+|.+....
T Consensus       226 I~TGsYDe~i~~~DtR-----------------nm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~~~  286 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTR-----------------NMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACM-HNGAKILDSSDK  286 (339)
T ss_pred             EEEeccccceeeeehh-----------------cccCccccCcc-ccceEEEEecchhhhHHHHHHH-hcCceEEEeccc
Confidence            9999999999999972                 34555544332 477999999994  33444443 344677766554


Q ss_pred             Cce----eeeeeeecCCeeeEEEecCCcEEEE--EeCCCeE
Q 016982          237 SPL----AQNVAFRDLPLRDVLFVSEKMVIGV--GFDCNPM  271 (379)
Q Consensus       237 ~~~----~~~~~~~~~~i~~~~~s~~~~~l~~--~~d~~~~  271 (379)
                      ...    ....+.|.+-...-.|.....++++  .+|+.++
T Consensus       287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~  327 (339)
T KOG0280|consen  287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIR  327 (339)
T ss_pred             ccchheeeeccccccceeeccccccccceeeeeecccccee
Confidence            322    2333445555666666444456775  3565544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.47  E-value=1e-10  Score=96.77  Aligned_cols=215  Identities=13%  Similarity=0.136  Sum_probs=154.2

Q ss_pred             eCCCCcEEEEEecCCeEEEEEecCCceEEEEEe-ccC---C-----CceEEEE-EcC-CCCEEEEEeCCCeEEEEeccCC
Q 016982           18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL-QKH---D-----QIVSGID-WSV-RSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus        18 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~---~-----~~v~~~~-~~~-~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      .+.||+.++.. ..|.|++||.++.+.+.+..- +-.   .     .+..-+. |++ +|++++..|. |+..+.+...+
T Consensus       274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            35678888775 458999999988754443321 111   0     1111122 333 5788888886 67778776666


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK-TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      -   .+. .++.+.|.-..+.-+++-++.|..|| .+-++|.++++    .+.+ ...-+.|.++..+|+|++++.+...
T Consensus       352 ~---~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~-e~~lg~I~av~vs~dGK~~vvaNdr  422 (668)
T COG4946         352 Y---SIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRI-EKDLGNIEAVKVSPDGKKVVVANDR  422 (668)
T ss_pred             e---eEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEe-eCCccceEEEEEcCCCcEEEEEcCc
Confidence            4   232 35677898888888888999999998 89999999886    4555 5677899999999999999999988


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC----CeEEEEECCCCCceee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN----SMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~v~d~~~~~~~~~  241 (379)
                      ..+.+.|+                  .++.....-+...+-|+.++|+|+++++|.+--+    ..|+++|+.+++.  .
T Consensus       423 ~el~vidi------------------dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki--y  482 (668)
T COG4946         423 FELWVIDI------------------DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI--Y  482 (668)
T ss_pred             eEEEEEEe------------------cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE--E
Confidence            88999987                  4444433333445679999999999999987655    4799999988763  2


Q ss_pred             eeeeecCCeeeEEEecCCcEEE
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                      .+.....--.+.+|.||+++|.
T Consensus       483 ~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         483 DVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EecCCcccccCcccCCCCcEEE
Confidence            3333344456788999999776

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.44  E-value=1.4e-10  Score=89.06  Aligned_cols=237  Identities=12%  Similarity=0.050  Sum_probs=150.3

Q ss_pred             eEEEeCC-----CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccCCc
Q 016982           14 TCHAWSP-----DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus        14 ~~~~~s~-----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      +.+.|.|     ...+||.|+..|...+|...+++ ...+....|...|+-+.=.- ..-.+..++.|.++++.+++.+.
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s  149 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS  149 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc
Confidence            3455655     33579999999999999998763 22333333443332221111 12346667889999999888765


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      ......  ...-.+.+++++++++++++.+....|..|.++..... ..+.......+.=.+..|+.....+|++..||+
T Consensus       150 ~~~~~h--~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey-~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~  226 (344)
T KOG4532|consen  150 NKFAVH--NQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY-IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT  226 (344)
T ss_pred             ccceee--ccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce-eeeeEecccCCCceeeeeccCcceEEEEecCCc
Confidence            333321  11233789999999999999999999999988766532 222221444455578899999999999999999


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC--EEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN--TLAYVGHNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      +.|||++.       ...      .......+-..|.+.+..+.|+|-|.  +|+..-.-+.+.+.|+++.......+..
T Consensus       227 ~~I~DVR~-------~~t------pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~  293 (344)
T KOG4532|consen  227 CAIYDVRN-------MAT------PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP  293 (344)
T ss_pred             EEEEEecc-------ccc------chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence            99999731       111      01111222345889999999998654  4555556688999999987654222211


Q ss_pred             ------ec-CCeeeEEEecCCcEEEEEeC
Q 016982          246 ------RD-LPLRDVLFVSEKMVIGVGFD  267 (379)
Q Consensus       246 ------~~-~~i~~~~~s~~~~~l~~~~d  267 (379)
                            |. ..|..-.|+.++.-+.....
T Consensus       294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  294 DDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             ccccccccccccccccccCCCcccccccc
Confidence                  11 22555666665554443333

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.44  E-value=1.4e-09  Score=102.91  Aligned_cols=253  Identities=16%  Similarity=0.268  Sum_probs=161.4

Q ss_pred             cceeEEEeCCCCcEE--EEEecCC--eEEEEEecCC-ceEEEEEec-----cCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982           11 QCITCHAWSPDHAMV--AFCPNNN--EVHIYKLIQE-KWEKLHVLQ-----KHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l--~~~~~dg--~i~i~~~~~~-~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      ..+...+|.+..+.+  +++....  .|.+-..... ..+.+..+.     ...+.|.++.+.++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            357777887765444  3332222  2334333322 123444443     23468999999999999999999999999


Q ss_pred             E----eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec-------------CC------ceeEE-
Q 016982           81 W----NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ-------------EN------NWWVS-  136 (379)
Q Consensus        81 w----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~-------------~~------~~~~~-  136 (379)
                      .    +.........   ..-...|.+++||||+..++..+.++++.+.+-+-             +.      .|... 
T Consensus       102 ~~~~~~~~~~~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe  178 (928)
T PF04762_consen  102 VREDPDPDEDEIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE  178 (928)
T ss_pred             EEccCCCCCceeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence            9    5555542222   23468999999999999999999988887743211             00      00000 


Q ss_pred             --------EE----Eee-----------cCCcCEEEEEEcCCCcEEEEeeC---C---CeEEEEeccccccccccccCCC
Q 016982          137 --------KL----IRK-----------RHDSSVTSVAWHPNNVFLATTST---D---GKCRVFSTFIKGVDIKEKKEGT  187 (379)
Q Consensus       137 --------~~----~~~-----------~~~~~v~~~~~~p~~~~l~~~~~---d---~~i~v~d~~~~~~~~~~~~~~~  187 (379)
                              +.    +..           .+...-..++|-.||.++|+.+.   .   ..++||+               
T Consensus       179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~---------------  243 (928)
T PF04762_consen  179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS---------------  243 (928)
T ss_pred             CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC---------------
Confidence                    00    000           02334567899999999998774   2   5789997               


Q ss_pred             ccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC---CCeEEEEECCCCCceeeeee--eecCCeeeEEEecCCcEE
Q 016982          188 SSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH---NSMIYFVDDVGPSPLAQNVA--FRDLPLRDVLFVSEKMVI  262 (379)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l  262 (379)
                          +.+....+-+.-.+--..++|.|.|+++|+...   ...|.+|.-+.-+.-...+.  .....|..+.|++|+.+|
T Consensus       244 ----ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iL  319 (928)
T PF04762_consen  244 ----REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEIL  319 (928)
T ss_pred             ----CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEE
Confidence                445544444333344457899999999998753   45688887443322112222  235678999999999999


Q ss_pred             EEEeCCCeEEEEecCCCcEEEEEE
Q 016982          263 GVGFDCNPMVFAADETGIWTFIKF  286 (379)
Q Consensus       263 ~~~~d~~~~i~~~~~~~~~~~~~~  286 (379)
                      |.-..+.+.+|...+-. |-+-..
T Consensus       320 Av~~~~~vqLWt~~NYH-WYLKqe  342 (928)
T PF04762_consen  320 AVWLEDRVQLWTRSNYH-WYLKQE  342 (928)
T ss_pred             EEEecCCceEEEeeCCE-EEEEEE
Confidence            97777779999877643 655443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1e-10  Score=98.63  Aligned_cols=232  Identities=14%  Similarity=0.136  Sum_probs=152.6

Q ss_pred             eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC--CEEEE-----EeCCCeEEEEeccCC
Q 016982           14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS--NRIVT-----VSHDRNSYVWNQEGS   86 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~d~~i~vw~~~~~   86 (379)
                      ++..|++|..+.|-- ..+.+++|+..+-+ ...+.+  |...|+.+.+||.+  ..+|+     .+.-..|++|.....
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~-~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFK-TIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCcc-ceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            578888887755433 24689999987642 233333  56789999999974  34444     234467999987632


Q ss_pred             ceeeeEEeec-CCCceeEEEECCCCCEEE-EEe--CC---------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982           87 EWVPTLVILR-LNRAALCVQWSPKENKFA-VGS--GA---------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH  153 (379)
Q Consensus        87 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~--~d---------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  153 (379)
                      .......... ....=..+.|++-|+-|+ .++  .|         .++++.+++...   ..-.  ....++|.++.|+
T Consensus       205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s---~~V~--L~k~GPVhdv~W~  279 (566)
T KOG2315|consen  205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES---VSVP--LLKEGPVHDVTWS  279 (566)
T ss_pred             cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce---EEEe--cCCCCCceEEEEC
Confidence            2111111000 123335678888766332 222  23         357776666322   2222  3567999999999


Q ss_pred             CCCcEEEE--eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC---CCeE
Q 016982          154 PNNVFLAT--TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH---NSMI  228 (379)
Q Consensus       154 p~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i  228 (379)
                      |+++.+++  |-.-..+.|||+                   .+.++..+  ..++-+++-|+|.|++++.++-   -|.|
T Consensus       280 ~s~~EF~VvyGfMPAkvtifnl-------------------r~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~m  338 (566)
T KOG2315|consen  280 PSGREFAVVYGFMPAKVTIFNL-------------------RGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDM  338 (566)
T ss_pred             CCCCEEEEEEecccceEEEEcC-------------------CCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCce
Confidence            99987765  446788999985                   35555555  3566789999999999998874   4899


Q ss_pred             EEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE-------eCCCeEEEEecCC
Q 016982          229 YFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG-------FDCNPMVFAADET  278 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-------~d~~~~i~~~~~~  278 (379)
                      -|||+.+.+ ++..+...  .-+-+.|+|||+++.++       -|+.++||.+.+.
T Consensus       339 EvwDv~n~K-~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  339 EVWDVPNRK-LIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEeccchh-hccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            999998854 44555433  34568999999988743       2788999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.4e-09  Score=94.58  Aligned_cols=212  Identities=8%  Similarity=-0.008  Sum_probs=125.9

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCE-EEEEeC---CCeEEEEeccCCceeeeEEeecCCCceeEEEEC
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNR-IVTVSH---DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWS  107 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~  107 (379)
                      ..|.+-|.+..  ....... .. .+....|+|||+. ++..+.   +..|.++|+.+++.....   ...+......|+
T Consensus       169 ~~l~~~d~dg~--~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~S  241 (419)
T PRK04043        169 SNIVLADYTLT--YQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVS  241 (419)
T ss_pred             ceEEEECCCCC--ceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEEC
Confidence            35666555544  2222222 23 7788999999985 654443   356999999888743332   245556678899


Q ss_pred             CCCCEEEEEeC-C--CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEeccccccccc
Q 016982          108 PKENKFAVGSG-A--KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIK  181 (379)
Q Consensus       108 ~~~~~l~~~~~-d--~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~  181 (379)
                      |||+.++.... +  ..|.++++..+.    .+.+ ..+........|+|||+.|+..+. .+  .|.++|+        
T Consensus       242 PDG~~la~~~~~~g~~~Iy~~dl~~g~----~~~L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl--------  308 (419)
T PRK04043        242 KDGSKLLLTMAPKGQPDIYLYDTNTKT----LTQI-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL--------  308 (419)
T ss_pred             CCCCEEEEEEccCCCcEEEEEECCCCc----EEEc-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC--------
Confidence            99987765433 3  456666766654    2333 333333445689999987777664 34  4555554        


Q ss_pred             cccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---------CeEEEEECCCCCceeeeeeeecCCeee
Q 016982          182 EKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---------SMIYFVDDVGPSPLAQNVAFRDLPLRD  252 (379)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~i~~  252 (379)
                                ..++. ..+.....  ....|+|+|++|+..+..         ..|.+.|+.++..  +.+... .....
T Consensus       309 ----------~~g~~-~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~  372 (419)
T PRK04043        309 ----------NSGSV-EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQF  372 (419)
T ss_pred             ----------CCCCe-EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe--EECCCC-CCcCC
Confidence                      22322 12211111  124899999998876543         3688889877653  334332 23346


Q ss_pred             EEEecCCcEEE-EE-eCCCeEEEEecCCC
Q 016982          253 VLFVSEKMVIG-VG-FDCNPMVFAADETG  279 (379)
Q Consensus       253 ~~~s~~~~~l~-~~-~d~~~~i~~~~~~~  279 (379)
                      ..|+|||+.|+ +. ..+.-.++..+-.+
T Consensus       373 p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        373 PRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             eEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence            89999999877 33 23343454444333

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=3.2e-10  Score=98.55  Aligned_cols=209  Identities=9%  Similarity=0.104  Sum_probs=126.8

Q ss_pred             cceeEEEeCCCCcE-EEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCC--CeEEEEec
Q 016982           11 QCITCHAWSPDHAM-VAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHD--RNSYVWNQ   83 (379)
Q Consensus        11 ~~i~~~~~s~~~~~-l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--~~i~vw~~   83 (379)
                      ..+....|+|||+. ++..+.   +..|+++|+.+++.+.+..   ..+......|+|||+.|+.. +.+  ..|.++|+
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence            36778999999985 665443   3579999998874444433   34455678899999877543 333  46888888


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      .+++..+.   ..+........|+|||+.|+..+. .+  .|.+.|+..+.   ..+.. .. ..  ....|+|+|++|+
T Consensus       265 ~~g~~~~L---T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~---~~rlt-~~-g~--~~~~~SPDG~~Ia  334 (419)
T PRK04043        265 NTKTLTQI---TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS---VEQVV-FH-GK--NNSSVSTYKNYIV  334 (419)
T ss_pred             CCCcEEEc---ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC---eEeCc-cC-CC--cCceECCCCCEEE
Confidence            88764332   223333445689999998887764 33  46666666655   22332 11 11  1248999999888


Q ss_pred             EeeCC---------CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC---CeE
Q 016982          161 TTSTD---------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN---SMI  228 (379)
Q Consensus       161 ~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i  228 (379)
                      .....         ..|.+.|+                  ..+. ...+... .......|+|||+.++..+.+   ..+
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~------------------~~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L  394 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLIST------------------NSDY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSAL  394 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEEC------------------CCCC-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEE
Confidence            76653         25666665                  2222 2333322 223358999999988776533   246


Q ss_pred             EEEECCCCCceeeeeeeecCCeeeEE
Q 016982          229 YFVDDVGPSPLAQNVAFRDLPLRDVL  254 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~~~~~i~~~~  254 (379)
                      .++++....+  ..+....+.+...+
T Consensus       395 ~~~~l~g~~~--~~l~~~~g~~~~p~  418 (419)
T PRK04043        395 GIIRLNYNKS--FLFPLKVGKIQSID  418 (419)
T ss_pred             EEEecCCCee--EEeecCCCccCCCC
Confidence            6777766432  33333334444443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.7e-11  Score=103.57  Aligned_cols=189  Identities=11%  Similarity=0.106  Sum_probs=144.3

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeec----
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR----   96 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----   96 (379)
                      +..+++.| ....|+-++++.+  ..+..+....+.++++..++-..+|++|+.+|.|..||......+..+....    
T Consensus       145 scDly~~g-sg~evYRlNLEqG--rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s  221 (703)
T KOG2321|consen  145 SCDLYLVG-SGSEVYRLNLEQG--RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS  221 (703)
T ss_pred             CccEEEee-cCcceEEEEcccc--ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCC
Confidence            33444444 4457888899887  6677777777899999999999999999999999999998876555543322    


Q ss_pred             CC-----CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC--cEEEEeeCCCeEE
Q 016982           97 LN-----RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN--VFLATTSTDGKCR  169 (379)
Q Consensus        97 ~~-----~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~d~~i~  169 (379)
                      +.     ..|+++.|+.+|-.+++|+.+|.+.|||+++..+.-   .-.....-+|..+.|.+.+  +.+++. ....++
T Consensus       222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~---~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~k  297 (703)
T KOG2321|consen  222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL---VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILK  297 (703)
T ss_pred             CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee---ecccCCccceeeecccccCCCceEEec-chHHhh
Confidence            22     349999999999999999999999999999987421   1113345688999998763  455544 466899


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      |||-                  .+++....+.. ...++.+++-|++.+++++-.+..+..|=+..
T Consensus       298 iWd~------------------~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  298 IWDE------------------CTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             hccc------------------ccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            9994                  67887777765 44599999999999999998888887776544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.42  E-value=1.5e-09  Score=102.77  Aligned_cols=315  Identities=13%  Similarity=0.187  Sum_probs=185.1

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEE----EecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIY----KLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE-   84 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-   84 (379)
                      .+.|.++.+-++...++.+..+|.|.++    +..+...+.+..+   ...|.+++||||+..|+..+.++++.+..-. 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            4679999999999989999999999999    6666544555444   4689999999999999999988888775421 


Q ss_pred             --------------CCcee-------------------------eeE------EeecCCCceeEEEECCCCCEEEEEeC-
Q 016982           85 --------------GSEWV-------------------------PTL------VILRLNRAALCVQWSPKENKFAVGSG-  118 (379)
Q Consensus        85 --------------~~~~~-------------------------~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~-  118 (379)
                                    ..+.+                         +..      .+. ....-..++|-.||.++|+.+. 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence                          00000                         000      000 2224567899999999999874 


Q ss_pred             --C---CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccC
Q 016982          119 --A---KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSD  190 (379)
Q Consensus       119 --d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~  190 (379)
                        .   ..++||+-+ +.   +.... ..-.+--.+++|.|.|+++|+.-.   ...|.+|.                  
T Consensus       231 ~~~~~~R~iRVy~Re-G~---L~stS-E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE------------------  287 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GE---LQSTS-EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE------------------  287 (928)
T ss_pred             cCCCceeEEEEECCC-ce---EEecc-ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe------------------
Confidence              2   468888755 32   12211 223333457899999999998764   34566664                  


Q ss_pred             CcccceEEEee----cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc-eeeeeeee-cCCeeeEEEecCCc--EE
Q 016982          191 TKFGEQILQLD----LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP-LAQNVAFR-DLPLRDVLFVSEKM--VI  262 (379)
Q Consensus       191 ~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~~~i~~~~~s~~~~--~l  262 (379)
                       +.|.....|.    .....|..+.|++|+..||..-.|. |.+|-..+-.- +.+.+... ...+..+.|+|...  +.
T Consensus       288 -rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  288 -RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             -cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence             3343333332    2345789999999999999876554 99998665421 22333322 23455699999543  33


Q ss_pred             EEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceee-ccccccCcccccccccccccccccceeeee
Q 016982          263 GVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLY-GQSKYGVGNDAVESSRTRGGTHVNCINCIV  341 (379)
Q Consensus       263 ~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  341 (379)
                      +...++.+..+...    |.+.......  +.....   ....+..... +.-+..-..+   |....--.-...|.+++
T Consensus       366 v~t~~g~~~~~~~~----~~v~~s~~~~--~~D~g~---vaVIDG~~lllTpf~~a~VPP---PMs~~~l~~~~~v~~va  433 (928)
T PF04762_consen  366 VLTSNGQYEIYDFA----WDVSRSPGSS--PNDNGT---VAVIDGNKLLLTPFRRAVVPP---PMSSYELELPSPVNDVA  433 (928)
T ss_pred             EEecCCcEEEEEEE----EEEEecCCCC--ccCceE---EEEEeCCeEEEecccccCCCc---hHhceEEcCCCCcEEEE
Confidence            44444766655532    3332211000  000000   0000000000 0000000000   11001112246799999


Q ss_pred             eecccCCcccceEEEeecCceEEEEeCCC
Q 016982          342 PLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       342 ~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                       |++++    ..+|.-..||.|.+|....
T Consensus       434 -f~~~~----~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  434 -FSPSN----SRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             -EeCCC----CeEEEEECCCCEEEEEecC
Confidence             66655    4599999999999998654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.41  E-value=8.5e-10  Score=91.53  Aligned_cols=147  Identities=12%  Similarity=0.095  Sum_probs=114.9

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCC-eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNN-EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      .+|...|.-..+..+++-++.|..|| .+-|||..++   ....+...-+.|.++..+|+|++++.+.....+.+.|+++
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn  432 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence            45677788888888888899999999 8999999986   4455566678899999999999999998888899999999


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC----eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK----TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      +..  .+.-....+-|+.+.|||+++++|.+--+|    .|+++|+..++.   ...  ....+.-.+-+|.|++++|..
T Consensus       433 gnv--~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki---y~v--TT~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         433 GNV--RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI---YDV--TTPTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             CCe--eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE---EEe--cCCcccccCcccCCCCcEEEE
Confidence            973  222244567899999999999999986654    588999988762   222  223333456789999988775


Q ss_pred             ee
Q 016982          162 TS  163 (379)
Q Consensus       162 ~~  163 (379)
                      -+
T Consensus       506 Ls  507 (668)
T COG4946         506 LS  507 (668)
T ss_pred             Ee
Confidence            54

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1.9e-10  Score=97.04  Aligned_cols=242  Identities=14%  Similarity=0.177  Sum_probs=155.4

Q ss_pred             eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----------CCeEEEEe
Q 016982           14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-----------DRNSYVWN   82 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~vw~   82 (379)
                      +-+.|||.|.||++--. .-|.+|--.+  +..++.+. |. .|.-+.|||..+||+|-+.           ...+.|||
T Consensus       214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~--f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHK-QGIALWGGES--FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCceEEEEEec-cceeeecCcc--HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            56899999999999865 4588995332  34445554 54 5789999999999998652           25699999


Q ss_pred             ccCCceeeeEEeecCCCce-eEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           83 QEGSEWVPTLVILRLNRAA-LCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      +.+|...+.+........+ .-+.||.|++++|.-.. ..|.||+...-.   +...- .-....|....|+|.++.||.
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~---lld~K-slki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM---LLDKK-SLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee---eeccc-ccCCccccCcccCCCcceEEE
Confidence            9999877777543333333 34689999999988776 568887654422   11111 223467889999999888875


Q ss_pred             eeC-----CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc----------CCC
Q 016982          162 TST-----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG----------HNS  226 (379)
Q Consensus       162 ~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----------~d~  226 (379)
                      =+.     -..+.+..+                  ++.+.+++-..++-.=..|.|-.+|.+|+.--          .-.
T Consensus       364 wtpe~~~~parvtL~ev------------------Ps~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~  425 (698)
T KOG2314|consen  364 WTPETNNIPARVTLMEV------------------PSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS  425 (698)
T ss_pred             EcccccCCcceEEEEec------------------CccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence            332     234555544                  55566666555554445678888899887631          112


Q ss_pred             eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE--EEeC--CCeEEEEec-CCCcEEEE
Q 016982          227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG--VGFD--CNPMVFAAD-ETGIWTFI  284 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d--~~~~i~~~~-~~~~~~~~  284 (379)
                      .+.|+.++...-.+..+. -...|...+|-|.|.-++  .+.+  .++.+|... ..+.|.++
T Consensus       426 n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV  487 (698)
T KOG2314|consen  426 NLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV  487 (698)
T ss_pred             eEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence            355666665443333333 356788999999887655  3322  355566555 33344443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=5.9e-09  Score=87.00  Aligned_cols=239  Identities=10%  Similarity=0.058  Sum_probs=141.4

Q ss_pred             eCCCCcEEEEEec----------CCeEEEEEecCCceEEEEEeccCCC-------ceEEEEEcCCCCEEEEEe-C-CCeE
Q 016982           18 WSPDHAMVAFCPN----------NNEVHIYKLIQEKWEKLHVLQKHDQ-------IVSGIDWSVRSNRIVTVS-H-DRNS   78 (379)
Q Consensus        18 ~s~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~-d~~i   78 (379)
                      +||||+.|+++..          +..|.+||..+.  +.+..+.....       .-..++++|||++|+... . +..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence            8999998876654          789999999997  56655553221       234789999999988766 3 6889


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE-EEeecCCcCE-EEEEEcC-C
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK-LIRKRHDSSV-TSVAWHP-N  155 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~~~~~v-~~~~~~p-~  155 (379)
                      .+.|+.+++.+..+..   .....-...+++..+  +-+.||......++......... .+......++ ..-.|.+ +
T Consensus       131 ~VvD~~~~kvv~ei~v---p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~d  205 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDV---PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKS  205 (352)
T ss_pred             EEEECCCCcEEEEEeC---CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCC
Confidence            9999999987776643   222222222222222  22334544443333322111111 1101100000 0013455 7


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-------cCCcceEEEEECCCCCEEEEEc-----
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------LSFSWAFGVKWSPSGNTLAYVG-----  223 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~-----  223 (379)
                      |+++....+ |.|.+.|+......             ....+..+.       ...+.+.-++++|+++++++..     
T Consensus       206 g~~~~vs~e-G~V~~id~~~~~~~-------------~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~  271 (352)
T TIGR02658       206 GRLVWPTYT-GKIFQIDLSSGDAK-------------FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAK  271 (352)
T ss_pred             CcEEEEecC-CeEEEEecCCCcce-------------ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence            777766655 99999996322111             112222211       1233345599999999888742     


Q ss_pred             -----CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEEE--eCCCeEEEEecCCC
Q 016982          224 -----HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGVG--FDCNPMVFAADETG  279 (379)
Q Consensus       224 -----~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~--~d~~~~i~~~~~~~  279 (379)
                           ..+.|.++|..+.+.. ..+.. +..+..++++||++ +|.+.  .++.+.+++.....
T Consensus       272 ~thk~~~~~V~ViD~~t~kvi-~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       272 WTHKTASRFLFVVDAKTGKRL-RKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             ccccCCCCEEEEEECCCCeEE-EEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence                 2258999999887643 55442 56789999999999 66533  46778888866543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=6.2e-09  Score=91.64  Aligned_cols=245  Identities=11%  Similarity=0.145  Sum_probs=163.7

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC------------CEEEEEeCCCeE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS------------NRIVTVSHDRNS   78 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i   78 (379)
                      ..-.++.|+|.| +||.|+. ..|.+.|..+-  +.++.++.|...|+.+.|.|..            -.|+++...|.|
T Consensus        16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             ccccccccCccc-eEEEecC-ceEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            346788999865 7888876 47888887764  7888999999999999998742            256788888999


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECC---CC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSP---KE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      .+||...+..+..+  ..+..++..++|-+   +. ..|+.-.....+.+|+..+++..+.  .  ........|+.+.|
T Consensus        92 il~d~~~~s~~~~l--~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~--~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   92 ILVDFVLASVINWL--SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--Y--DYSHEILSCFRVDP  165 (1062)
T ss_pred             EEEEehhhhhhhhh--cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--c--ccCCcceeeeeeCC
Confidence            99999888644443  66788999999976   33 4666666678999999999874221  1  23334567788988


Q ss_pred             -CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc-------------------------ceE
Q 016982          155 -NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS-------------------------WAF  208 (379)
Q Consensus       155 -~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~v~  208 (379)
                       |.+.+..-+..|.+.+-+...    ..++.       -.++..+.-..|..                         ...
T Consensus       166 fd~rh~~~l~s~g~vl~~~~l~----~sep~-------~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a  234 (1062)
T KOG1912|consen  166 FDSRHFCVLGSKGFVLSCKDLG----LSEPD-------VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA  234 (1062)
T ss_pred             CCcceEEEEccCceEEEEeccC----CCCCC-------CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence             457777777788887776421    00000       00111111111100                         123


Q ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc--EEE-EEeCCCeEEEEecC
Q 016982          209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM--VIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~-~~~d~~~~i~~~~~  277 (379)
                      .++|+|.-+.++.......+.++|++-... +..+....+.+.-+.|-|+++  .|. .-.+|.+.+|-...
T Consensus       235 ~faf~p~~rn~lfi~~prellv~dle~~~~-l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  235 QFAFSPHWRNILFITFPRELLVFDLEYECC-LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhcChhhhceEEEEeccceEEEcchhhce-eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            468888765555556778899999876553 355555556666788888764  444 55788888887554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=1.3e-11  Score=116.93  Aligned_cols=192  Identities=12%  Similarity=0.101  Sum_probs=148.1

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982           52 KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN  131 (379)
Q Consensus        52 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~  131 (379)
                      .+-..|.++.=+|...+-+||+.||.+++|....++.+..+...+. ..|+.+.|+.+|+.+.++..||.+.+|......
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence            3445678888888888999999999999999999987777775555 899999999999999999999999999887332


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcc-cceEEEeecCCcce
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKF-GEQILQLDLSFSWA  207 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v  207 (379)
                          .... ..|.....++.|-.  ..+++.+   .++.+.+||..                ... ..++.  ..|.+.+
T Consensus      2285 ----~~s~-qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl----------------~~~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2285 ----YTSW-QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTL----------------LPPMNSLVH--TCHDGGA 2339 (2439)
T ss_pred             ----eecc-ccCCccccceeeee--hhhhccccCCCCCcccchhcc----------------cCcccceee--eecCCCc
Confidence                2222 57888888888864  5666654   47889999962                111 22233  7899999


Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982          208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG  279 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~  279 (379)
                      +++++.|..++|++|+.+|.|++||++..+ +.+.++.         +.....++.++..|.++||..++-+
T Consensus      2340 T~l~~~P~~qllisggr~G~v~l~D~rqrq-l~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2340 TVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-LRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             eEEEEcCcceEEEecCCcCcEEEeehHHHH-HHHHhhh---------hhhhheeeccCcccceEEEEccccc
Confidence            999999999999999999999999998754 3344332         3323344557889999999987654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.32  E-value=1.1e-09  Score=91.64  Aligned_cols=240  Identities=15%  Similarity=0.117  Sum_probs=157.2

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC--------------
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD--------------   75 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------   75 (379)
                      .-++..++|||.|.+|++... ..|.+|.-...  ..+..+. | ..|..+.|+|.+++|.+-+..              
T Consensus        32 ~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~--~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~  106 (561)
T COG5354          32 NWPVAYVSESPLGTYLFSEHA-AGVECWGGPSK--AKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS  106 (561)
T ss_pred             CcchhheeecCcchheehhhc-cceEEccccch--hheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence            457889999999999998765 46999987765  3444444 3 368999999999999986543              


Q ss_pred             -CeEEEEeccCCceeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982           76 -RNSYVWNQEGSEWVPTLVILRLNRAAL-CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH  153 (379)
Q Consensus        76 -~~i~vw~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  153 (379)
                       ..+.+||..++..+..+.......-.+ -+.|+-+.+++|-.. ...++|+++ +...  ....+..-....+....|+
T Consensus       107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~--~~~p~~~lr~~gi~dFsis  182 (561)
T COG5354         107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNI--EEHPFKNLRPVGILDFSIS  182 (561)
T ss_pred             cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCcc--ccCchhhccccceeeEEec
Confidence             359999999998777765443332244 678888887776553 456889887 4331  0111101123568888999


Q ss_pred             CCC--cEEEE-----eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc---
Q 016982          154 PNN--VFLAT-----TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG---  223 (379)
Q Consensus       154 p~~--~~l~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---  223 (379)
                      |.+  ..|+.     .+.++.+++|.+                  .....+.+-......-..+.|.+.|++|+.--   
T Consensus       183 P~~n~~~la~~tPEk~~kpa~~~i~sI------------------p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~  244 (561)
T COG5354         183 PEGNHDELAYWTPEKLNKPAMVRILSI------------------PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH  244 (561)
T ss_pred             CCCCCceEEEEccccCCCCcEEEEEEc------------------cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence            964  33443     456788999987                  33444433322233335789999998876521   


Q ss_pred             --------CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE--E-EeCCCeEEEEecCC
Q 016982          224 --------HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG--V-GFDCNPMVFAADET  278 (379)
Q Consensus       224 --------~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~-~~d~~~~i~~~~~~  278 (379)
                              ....++++++....-  .......++|...+|.|.++-++  . -.+..+.+++.+.+
T Consensus       245 ~ksnKsyfgesnLyl~~~~e~~i--~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         245 TKSNKSYFGESNLYLLRITERSI--PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             eecccceeccceEEEEeeccccc--ceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence                    135688888875432  22224478999999999876554  2 34556666666543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.31  E-value=1.6e-08  Score=97.66  Aligned_cols=252  Identities=10%  Similarity=0.063  Sum_probs=153.1

Q ss_pred             eEEEeCCC-CcEEEEEecCCeEEEEEecCCceEEEEEecc--C------------CCceEEEEEcCCCCEEEEEe-CCCe
Q 016982           14 TCHAWSPD-HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK--H------------DQIVSGIDWSVRSNRIVTVS-HDRN   77 (379)
Q Consensus        14 ~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~l~~~~-~d~~   77 (379)
                      ..++++++ ++++++-..++.|+++|..+.   .+..+.+  .            -.....+++.++++.|+++. .++.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            46788874 556666677889999998754   2222221  0            11347899999888776665 4567


Q ss_pred             EEEEeccCCceeeeEEeecC---------------CCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-
Q 016982           78 SYVWNQEGSEWVPTLVILRL---------------NRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIR-  140 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-  140 (379)
                      |+++|..++.. ..+...+.               -.....++++| ++..+++...++.|++||...+..    ..+. 
T Consensus       648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v----~~~~G  722 (1057)
T PLN02919        648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT----RVFSG  722 (1057)
T ss_pred             EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE----EEEec
Confidence            99999877642 22211000               11346799999 556666667788999998866541    1110 


Q ss_pred             -------e------cCCcCEEEEEEcCCCc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-----
Q 016982          141 -------K------RHDSSVTSVAWHPNNV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-----  201 (379)
Q Consensus       141 -------~------~~~~~v~~~~~~p~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  201 (379)
                             .      ........++++|+++ ++++-+.++.|++||+............+.     .......+.     
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~-----~~~~l~~fG~~dG~  797 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT-----FSDNLFKFGDHDGV  797 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc-----cCcccccccCCCCc
Confidence                   0      0112346799999987 455556678999999742211100000000     000000000     


Q ss_pred             ---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee--------------cCCeeeEEEecCCcEEEE
Q 016982          202 ---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR--------------DLPLRDVLFVSEKMVIGV  264 (379)
Q Consensus       202 ---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------------~~~i~~~~~s~~~~~l~~  264 (379)
                         ..-.....++++++|+++++-..++.|++||..++..  ..+.+.              -.....++++++|+++++
T Consensus       798 g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v--~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        798 GSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV--TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             hhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE--EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence               0011246899999999888888999999999876542  222211              124678999999997664


Q ss_pred             -EeCCCeEEEEecCCCc
Q 016982          265 -GFDCNPMVFAADETGI  280 (379)
Q Consensus       265 -~~d~~~~i~~~~~~~~  280 (379)
                       +.++.|++|+......
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence             4677899999876543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.31  E-value=6.6e-08  Score=78.73  Aligned_cols=223  Identities=12%  Similarity=0.100  Sum_probs=139.2

Q ss_pred             eEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEc-CCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982           14 TCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS-VRSNRIVTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        14 ~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      .++.|.+ ++.++++-...+.|+.|+..++.  . ..+....  ...+++. +++ .|+.+...+ +.++|..+++....
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~--~-~~~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGE--V-EVIDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTE--E-EEEESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCe--E-EEEecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEE
Confidence            3678888 77777777778999999998872  2 2222222  5677777 565 555555544 56669999876555


Q ss_pred             EEee--c-CCCceeEEEECCCCCEEEEEeCC--------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           92 LVIL--R-LNRAALCVQWSPKENKFAVGSGA--------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        92 ~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      ....  . .....+.+++.|+|++.++....        |.+..++.. ++    ...+ .......+.++|+|+++.|+
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~----~~~~-~~~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK----VTVV-ADGLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE----EEEE-EEEESSEEEEEEETTSSEEE
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce----EEEE-ecCcccccceEECCcchhee
Confidence            5442  1 34678899999999977776543        345444444 22    2223 23345568999999998665


Q ss_pred             -EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982          161 -TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       161 -~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                       +-+..+.|..+++.......           ...+....+....+..-.+++..+|++.++....+.|.++|.. ++ +
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-~  216 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGEL-----------SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-L  216 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCE-----------EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-E
T ss_pred             ecccccceeEEEeccccccce-----------eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-E
Confidence             55667888888862100000           0112222333333457889999999988877788999999977 44 4


Q ss_pred             eeeeeeecCCeeeEEEe-cCCcEE
Q 016982          240 AQNVAFRDLPLRDVLFV-SEKMVI  262 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s-~~~~~l  262 (379)
                      +..+......+++++|. ++.+.|
T Consensus       217 ~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  217 LREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             EEEEcCCCCCEEEEEEECCCCCEE
Confidence            45555544578999995 554443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.7e-10  Score=94.90  Aligned_cols=272  Identities=11%  Similarity=0.052  Sum_probs=184.7

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CCeEEEEecc
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DRNSYVWNQE   84 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~   84 (379)
                      +-|.+.|+.+..+ -.+++.+++.||.++.|.-.. ...+.+..+..|...|.+++.+-++..++|.+. |..++++|++
T Consensus         6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            4588888887765 457999999999999998765 334666777889999999999999999999777 9999999998


Q ss_pred             CCceeeeEEeecCCCceeEEEECCC-C-CEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPK-E-NKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      +-..+..+.+...++.+..+ .++. - ..+++. -.++.+.++|-.....  ....+..-|..+|.++.+.|.+..+++
T Consensus        85 n~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             ccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcC--ccceecccccCceEEEEeeccccceee
Confidence            87644443332223322221 2221 1 133333 3478899987655442  122233668999999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      ....|.|.-|....   ++..+........+...-+..+.-......++.|+|+|..+.+-+.|..|++++..+++. ++
T Consensus       162 iD~~gmVEyWs~e~---~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl-vq  237 (558)
T KOG0882|consen  162 IDISGMVEYWSAEG---PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL-VQ  237 (558)
T ss_pred             ccccceeEeecCCC---cccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh-hh
Confidence            99999999998631   111111111111222233333434456678999999999999999999999999877541 11


Q ss_pred             ee--------------------------------eeec-CCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEE
Q 016982          242 NV--------------------------------AFRD-LPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKF  286 (379)
Q Consensus       242 ~~--------------------------------~~~~-~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~  286 (379)
                      .+                                ..|+ ..-+.+.|...|++|.-+.--.+++++++.+...+....
T Consensus       238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~gk  315 (558)
T KOG0882|consen  238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRILGK  315 (558)
T ss_pred             hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEecc
Confidence            11                                1111 123567888889999988888899999888765555543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.28  E-value=1.6e-08  Score=97.79  Aligned_cols=269  Identities=13%  Similarity=0.049  Sum_probs=151.5

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEeccCCceeeeEEeecC------------CCceeEEEECCCCCEEEEEeC-CCeEE
Q 016982           58 SGIDWSVR-SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL------------NRAALCVQWSPKENKFAVGSG-AKTVC  123 (379)
Q Consensus        58 ~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~-d~~v~  123 (379)
                      ..+++++. ++.+++-+.++.|.++|..... ...+...+.            -.....+++.++++.|+++.. ++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788875 4556666677889999986542 222211011            123578999998887666554 56788


Q ss_pred             EEEeecCCceeEEEEEee-cC---------------CcCEEEEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCC
Q 016982          124 ICYYEQENNWWVSKLIRK-RH---------------DSSVTSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEG  186 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~-~~---------------~~~v~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  186 (379)
                      .+|+.++.    ...+.. +.               -..-..++++| ++.++++.+.++.|++||........-.....
T Consensus       650 ~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~  725 (1057)
T PLN02919        650 EIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY  725 (1057)
T ss_pred             EEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence            88876654    222200 00               11235799999 56677777788999999863211100000000


Q ss_pred             CccCCcccceEEEeecCCcceEEEEECCCCCEEE-EEcCCCeEEEEECCCCCceeee------------eee--------
Q 016982          187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA-YVGHNSMIYFVDDVGPSPLAQN------------VAF--------  245 (379)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~v~d~~~~~~~~~~------------~~~--------  245 (379)
                      . . ...+.. . ....-.....++++|+++.|+ +-+.++.|++||+.++......            +..        
T Consensus       726 ~-~-~~~g~~-~-~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~  801 (1057)
T PLN02919        726 E-R-NLNGSS-G-TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV  801 (1057)
T ss_pred             c-c-cCCCCc-c-ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence            0 0 000000 0 000112357799999998554 4556789999998865421100            000        


Q ss_pred             ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccc
Q 016982          246 RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVE  324 (379)
Q Consensus       246 ~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (379)
                      .-.....++++++|.+++ -..++.|++|+.+....-.+..   ....         .       +.    .|       
T Consensus       802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG---~G~~---------G-------~~----dG-------  851 (1057)
T PLN02919        802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG---TGKA---------G-------FK----DG-------  851 (1057)
T ss_pred             hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec---cCCc---------C-------CC----CC-------
Confidence            011245889999998666 4567788888876533222111   0000         0       00    00       


Q ss_pred             cccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982          325 SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED  373 (379)
Q Consensus       325 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~  373 (379)
                         ....++-.....|+ +++++    +++++-+.++.|++||+.+++.
T Consensus       852 ---~~~~a~l~~P~GIa-vd~dG----~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        852 ---KALKAQLSEPAGLA-LGENG----RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ---cccccccCCceEEE-EeCCC----CEEEEECCCCEEEEEECCCCcc
Confidence               00123344567788 66665    8999999999999999988764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=2e-09  Score=93.91  Aligned_cols=191  Identities=16%  Similarity=0.325  Sum_probs=124.6

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .++-+|.+.|.-+.|+.+.+.|-+...+|.|.+|-+-.+.|-...+-....+.|.+++|+.+|..|+..-.||.|.+=.+
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            46789999999999999999999999999999999987755443333445567899999999999998888888776555


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCC-----------------------------------------------------
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKE-----------------------------------------------------  110 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------------------------  110 (379)
                      +..+.-.. .+  .......+.|++|.                                                     
T Consensus       145 dGNRIwgK-eL--kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~  221 (1189)
T KOG2041|consen  145 DGNRIWGK-EL--KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP  221 (1189)
T ss_pred             ccceecch-hc--chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence            44321000 00  00111233344443                                                     


Q ss_pred             --------CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC---------CeEEEEec
Q 016982          111 --------NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD---------GKCRVFST  173 (379)
Q Consensus       111 --------~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d---------~~i~v~d~  173 (379)
                              ..|+++-.+|.+.+..-.....    ..+ ....-.+..+.|+++|..|+.++.+         +.|.+|. 
T Consensus       222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~----Pvv-~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-  295 (1189)
T KOG2041|consen  222 YQPVPPDRPRLAVCYANGRMQIMRSENDPE----PVV-VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-  295 (1189)
T ss_pred             cccCCCCCCEEEEEEcCceehhhhhcCCCC----CeE-EecccEeecceecCCCcEEEEccCcccccCccccceEEEec-
Confidence                    4455555555555422222111    111 1223456788999999999988753         2466664 


Q ss_pred             cccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEE
Q 016982          174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  221 (379)
                                        +.++.+.+++.....|++++|-..|-.++.
T Consensus       296 ------------------p~G~i~gtlkvpg~~It~lsWEg~gLriA~  325 (1189)
T KOG2041|consen  296 ------------------PYGHIVGTLKVPGSCITGLSWEGTGLRIAI  325 (1189)
T ss_pred             ------------------cchhheEEEecCCceeeeeEEcCCceEEEE
Confidence                              567777888777788888888766655544

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=6.5e-11  Score=99.95  Aligned_cols=211  Identities=12%  Similarity=0.067  Sum_probs=148.0

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC-----ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-----KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY   79 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (379)
                      .+.+|...|.+++--.+.+-+++++.|++|++|.++..     ...+..+++.|..+|.++.|-.+-++++++  |+.|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence            45788889998887777888999999999999999743     234778889999999999999888888765  78899


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEE-EeCCCeEEEEEeecCCceeEEEEE-eecCCcCEEEEEEcCC
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAV-GSGAKTVCICYYEQENNWWVSKLI-RKRHDSSVTSVAWHPN  155 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~  155 (379)
                      +||.--++....+......+.+..+..-|  +...+.. ++...+|+++|.+..+-....+.. ..+....+.+++..|.
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~  887 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK  887 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence            99987766544333222233333343333  3334444 467889999998876521111111 0344567899999999


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEE-EECC
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF-VDDV  234 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v-~d~~  234 (379)
                      |++++.+-.+|.|.+.|.                  ++++.+..+.........++ .|..+.|+....|.++.+ |...
T Consensus       888 GN~lAa~LSnGci~~LDa------------------R~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  888 GNKLAAALSNGCIAILDA------------------RNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             cchhhHHhcCCcEEEEec------------------CCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhc
Confidence            999999999999999996                  66776665544333344443 456667777777888888 7644


Q ss_pred             CC
Q 016982          235 GP  236 (379)
Q Consensus       235 ~~  236 (379)
                      .+
T Consensus       949 dg  950 (1034)
T KOG4190|consen  949 DG  950 (1034)
T ss_pred             CC
Confidence            43

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=5.3e-09  Score=88.53  Aligned_cols=237  Identities=11%  Similarity=0.173  Sum_probs=142.2

Q ss_pred             cceeEEEeCCCCcEEEEEec-----------CCeEEEEEecCCceEEEEEecc--CCCc-eEEEEEcCCCCEEEEEeCCC
Q 016982           11 QCITCHAWSPDHAMVAFCPN-----------NNEVHIYKLIQEKWEKLHVLQK--HDQI-VSGIDWSVRSNRIVTVSHDR   76 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~--~~~~-v~~~~~~~~~~~l~~~~~d~   76 (379)
                      ..|.-+.|||+.+||++=+.           ...+.|||+.++  ...+.+..  .... -.-..||.|++++|-...+ 
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG--~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-  326 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG--LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-  326 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc--chhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence            35788999999999998543           257999999998  44444443  1222 2346899999999887764 


Q ss_pred             eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982           77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  151 (379)
                      .|.||+..+-.+.....+  .-..|....|+|.++.||.-...     ..+.+..+.....   .+.. .-+.-.=..+-
T Consensus       327 sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~---iRt~-nlfnVsDckLh  400 (698)
T KOG2314|consen  327 SISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE---IRTK-NLFNVSDCKLH  400 (698)
T ss_pred             eEEEEecCceeeeccccc--CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce---eeec-cceeeeccEEE
Confidence            689998766432221111  23678999999999988875431     2244433333331   1111 11222223456


Q ss_pred             EcCCCcEEEEeeC-------C---CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEE
Q 016982          152 WHPNNVFLATTST-------D---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       152 ~~p~~~~l~~~~~-------d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  221 (379)
                      |..+|.+|+.--.       .   ..+.|+.+.                 ...-++..... ...|...+|-|.|+.+++
T Consensus       401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir-----------------eKdIpve~vel-ke~vi~FaWEP~gdkF~v  462 (698)
T KOG2314|consen  401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR-----------------EKDIPVEVVEL-KESVIAFAWEPHGDKFAV  462 (698)
T ss_pred             eccCCcEEEEEEEeeccccccceEeeEEEEEee-----------------ccCCCceeeec-chheeeeeeccCCCeEEE
Confidence            7777777764321       1   124444431                 11222222222 456889999999988776


Q ss_pred             EcC---CCeEEEEECCCC-Cc--eeeeeeeecCCeeeEEEecCCcEEEE----EeCCCeEEEEec
Q 016982          222 VGH---NSMIYFVDDVGP-SP--LAQNVAFRDLPLRDVLFVSEKMVIGV----GFDCNPMVFAAD  276 (379)
Q Consensus       222 ~~~---d~~i~v~d~~~~-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~----~~d~~~~i~~~~  276 (379)
                      -+.   ..++.+|.+.+. ..  ++..+.  ....+.+.|+|.|++++.    +..+.+.+++.+
T Consensus       463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            543   357889987732 21  223333  345788999999998873    335556665544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.25  E-value=2.7e-10  Score=92.32  Aligned_cols=162  Identities=14%  Similarity=0.051  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeccCCce-eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE
Q 016982           57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW-VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV  135 (379)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  135 (379)
                      ...+..++.++++|.+..+....+++...... ........-....+++.|..+.....++..-|.++-+|.-....+ .
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-R  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-C
Confidence            34456678888999988888877777654431 122222223444556666665555555555455554444332211 2


Q ss_pred             EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECC
Q 016982          136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSP  214 (379)
Q Consensus       136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp  214 (379)
                      .+.+ .+|-..+++++|+||+++++++..|..|++-..                  +....+..+ -+|...|..++.-+
T Consensus       144 ~~~~-lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y------------------pa~f~IesfclGH~eFVS~isl~~  204 (390)
T KOG3914|consen  144 CEPI-LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY------------------PATFVIESFCLGHKEFVSTISLTD  204 (390)
T ss_pred             cchh-hhhhhhhheeeecCCCCEEEEecCCceEEEEec------------------CcccchhhhccccHhheeeeeecc
Confidence            3444 699999999999999999999999999999765                  333444455 36888999999876


Q ss_pred             CCCEEEEEcCCCeEEEEECCCCCce
Q 016982          215 SGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +. .|+++|.|+++++||+.+++.+
T Consensus       205 ~~-~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  205 NY-LLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             Cc-eeeecCCCCcEEEEecccCCcc
Confidence            54 5899999999999999998754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.24  E-value=2.3e-08  Score=83.83  Aligned_cols=235  Identities=14%  Similarity=0.152  Sum_probs=149.6

Q ss_pred             CcceeEEEeCCCCcEEEEEecCC---------------eEEEEEecCCceEEEEEeccCCCc--eE-EEEEcCCCCEEEE
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNN---------------EVHIYKLIQEKWEKLHVLQKHDQI--VS-GIDWSVRSNRIVT   71 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg---------------~i~i~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~   71 (379)
                      ...|..+.|||++++|.+-+..+               .+.+||..++  ..+..+..-..+  .. -+.|+-+.+++|-
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D~y~AR  148 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSIDDKYVAR  148 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeEeeccccCCcccccceeeeeecchhhhh
Confidence            35688899999999999865433               4899999998  667666665554  44 6788888877665


Q ss_pred             EeCCCeEEEEeccCCceeeeEEeec-CCCceeEEEECCCC--CEEEE-----EeCCCeEEEEEeecCCceeEEEEEeecC
Q 016982           72 VSHDRNSYVWNQEGSEWVPTLVILR-LNRAALCVQWSPKE--NKFAV-----GSGAKTVCICYYEQENNWWVSKLIRKRH  143 (379)
Q Consensus        72 ~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~-----~~~d~~v~i~~~~~~~~~~~~~~~~~~~  143 (379)
                      .. ...+.++++ ++.... ..... ....+....|+|.+  ..|+.     .+.++.+++|.+..+.... .+.+   .
T Consensus       149 vv-~~sl~i~e~-t~n~~~-~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~-tk~l---f  221 (561)
T COG5354         149 VV-GSSLYIHEI-TDNIEE-HPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV-TKNL---F  221 (561)
T ss_pred             hc-cCeEEEEec-CCcccc-CchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee-eeee---E
Confidence            53 346999997 443111 11111 13678889999953  34444     3457889998887554321 2222   1


Q ss_pred             CcCEEEEEEcCCCcEEEEeeC-----------CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEE
Q 016982          144 DSSVTSVAWHPNNVFLATTST-----------DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKW  212 (379)
Q Consensus       144 ~~~v~~~~~~p~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  212 (379)
                      ...=..+.|++.|++|+.--.           ...+.|+++.                   ...+.....-.++|...+|
T Consensus       222 k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-------------------e~~i~V~~~~~~pVhdf~W  282 (561)
T COG5354         222 KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-------------------ERSIPVEKDLKDPVHDFTW  282 (561)
T ss_pred             eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-------------------ccccceeccccccceeeee
Confidence            112246889999887664211           2457777751                   1112111134678999999


Q ss_pred             CCCCCEEEEEc--CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeC---CCeEEEEec
Q 016982          213 SPSGNTLAYVG--HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFD---CNPMVFAAD  276 (379)
Q Consensus       213 sp~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d---~~~~i~~~~  276 (379)
                      .|.++.+++.+  .+..+.++|++.+  +...  .....=+.+.|+|.++++. +|.|   +.+.+|+..
T Consensus       283 ~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         283 EPLSSRFAVISGYMPASVSVFDLRGN--LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             cccCCceeEEecccccceeecccccc--eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence            99888776654  6778999998876  2222  2344556788999999877 5554   356666544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.24  E-value=8.4e-10  Score=89.56  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=107.5

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCc--eEEEEEeccCCCceEEEEEcCCCCEEEEE---eCCCeEEEEeccCC
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK--WEKLHVLQKHDQIVSGIDWSVRSNRIVTV---SHDRNSYVWNQEGS   86 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~vw~~~~~   86 (379)
                      .+..+..+|.+++||++..+....++++....  .+....... ...-+++.|..+......+   +....+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            34455678899999999888887788776542  233333322 2233445554444444443   34445666666554


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                      ...   ...+|-..+++++|+||++.|+++..|..|++-.+....   ....+..+|..-|..++.-++ +.|++++.|+
T Consensus       143 ~~~---~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f---~IesfclGH~eFVS~isl~~~-~~LlS~sGD~  215 (390)
T KOG3914|consen  143 RCE---PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF---VIESFCLGHKEFVSTISLTDN-YLLLSGSGDK  215 (390)
T ss_pred             Ccc---hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc---chhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence            422   236899999999999999999999999999996555443   344444789999999999854 5689999999


Q ss_pred             eEEEEec
Q 016982          167 KCRVFST  173 (379)
Q Consensus       167 ~i~v~d~  173 (379)
                      ++++||+
T Consensus       216 tlr~Wd~  222 (390)
T KOG3914|consen  216 TLRLWDI  222 (390)
T ss_pred             cEEEEec
Confidence            9999997

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.23  E-value=1.5e-08  Score=78.04  Aligned_cols=227  Identities=9%  Similarity=0.003  Sum_probs=143.8

Q ss_pred             cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC-----CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEE
Q 016982           30 NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR-----SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCV  104 (379)
Q Consensus        30 ~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~  104 (379)
                      ....|.+|++.++....+...       ..+.|.|.     ..+|+.|+..|...+|...+.+....+. ..+...|+-+
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~c-d~snn~v~~~  121 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQC-DVSNNDVTLV  121 (344)
T ss_pred             ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeee-cccccchhhh
Confidence            445677787766521122222       34556553     3578999899999999998765222221 2223322211


Q ss_pred             E-ECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccc
Q 016982          105 Q-WSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEK  183 (379)
Q Consensus       105 ~-~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  183 (379)
                      . ..-....+..++.|.++++.+++.+..   ...+ ....-.+.+++++++++++++.+....|..|.+.         
T Consensus       122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~---~~~~-h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id---------  188 (344)
T KOG4532|consen  122 KRYCDLKFPLNIASNDHTGKTMVVSGDSN---KFAV-HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAID---------  188 (344)
T ss_pred             hhhcccccceeeccCCcceeEEEEecCcc---ccee-eccccceeeeEEcCCCceEEEecCCCcceEEEeC---------
Confidence            1 111233567788899999998887762   2222 1111237899999999999999999999999872         


Q ss_pred             cCCCccCCcccceEEEe--ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee----eeeeecCCeeeEEEec
Q 016982          184 KEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ----NVAFRDLPLRDVLFVS  257 (379)
Q Consensus       184 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~~i~~~~~s~  257 (379)
                              ..++.+..+  ......-.+..|+.....+|++..||++.|||++....+..    +-..|.+.+..+.|++
T Consensus       189 --------~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl  260 (344)
T KOG4532|consen  189 --------DESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL  260 (344)
T ss_pred             --------CccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence                    333333322  12233456788999999999999999999999987543322    2234788999999998


Q ss_pred             CCc--EEE-EEeCCCeEEEEecCCCcEEEEE
Q 016982          258 EKM--VIG-VGFDCNPMVFAADETGIWTFIK  285 (379)
Q Consensus       258 ~~~--~l~-~~~d~~~~i~~~~~~~~~~~~~  285 (379)
                      .|.  +|. +-.-+.+.+.+.......+++.
T Consensus       261 ~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  261 YGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             CCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            664  333 4455567777766655444444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.22  E-value=1.1e-07  Score=74.39  Aligned_cols=220  Identities=12%  Similarity=0.116  Sum_probs=131.1

Q ss_pred             EEeCCCCcEEEEEecCCeEEEEEecCCceEEE---EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982           16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKL---HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      ++.+++|++||.- .|..|.|-..+++--..+   ...+.....=..++||||+..||.+...|+|+++|+...++- .+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-Ec
Confidence            5678899999886 667888876665411111   222222234578999999999999999999999999865421 11


Q ss_pred             Ee-----ecCCCceeEEEECCC------CCEEEEEeCCCeEEEEEeecC--CceeEEEE--EeecCCcCEEEEEEcCCCc
Q 016982           93 VI-----LRLNRAALCVQWSPK------ENKFAVGSGAKTVCICYYEQE--NNWWVSKL--IRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        93 ~~-----~~~~~~v~~~~~~~~------~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~--~~~~~~~~v~~~~~~p~~~  157 (379)
                      ..     ......|..+.|-+.      ...|++-..+|.++-|-+..+  +.......  +...+...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            10     112345666767542      225666677888887766432  22111111  1133567899999999988


Q ss_pred             EEEEeeCC-----------CeEEEEecccccccccc---ccCCCccCCcccceE--EE-----e-ecCCcceEEEEECCC
Q 016982          158 FLATTSTD-----------GKCRVFSTFIKGVDIKE---KKEGTSSDTKFGEQI--LQ-----L-DLSFSWAFGVKWSPS  215 (379)
Q Consensus       158 ~l~~~~~d-----------~~i~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~--~~-----~-~~~~~~v~~~~~sp~  215 (379)
                      +|++|+..           .-+..|.+-...-....   .........+.....  ..     . ......|..|..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            88877641           12556654211000000   000000000000000  01     1 123567999999999


Q ss_pred             CCEEEEEcCCCeEEEEECCCCC
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      |..||+...+|.|.+|++.+-.
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcch
Confidence            9999999999999999988754

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.18  E-value=1.1e-09  Score=83.71  Aligned_cols=200  Identities=12%  Similarity=0.111  Sum_probs=115.7

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCC----------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQE----------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      |+.+.++-+ ..|+++..++.+..+...+.          ...+...+..|..+-.+-+.+-.++.++++..||.+.+.+
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            666666543 34566656555554443221          1122333333433322223333467899999999999998


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-----AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-  156 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-  156 (379)
                      .+............|. .-.+.++...++.+.++.-     -+..+.|+++..+.   .... ......|.+++-+|.. 
T Consensus       118 ~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t---~~~~-~~~~~~v~~l~~hp~qq  192 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT---LIPS-KKALDAVTALCSHPAQQ  192 (319)
T ss_pred             chHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeeccccccc---cccc-ccccccchhhhCCcccc
Confidence            7652110000000111 1122223333444444321     23455666655442   1111 1222348999999965 


Q ss_pred             cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCC
Q 016982          157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      +.+++|+.||.+-+||.+                 .-..+...+..|..+++.+-|+| ++..|+++++||.+.-||..+
T Consensus       193 ~~v~cgt~dg~~~l~d~r-----------------n~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  193 HLVCCGTDDGIVGLWDAR-----------------NVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cEEEEecCCCeEEEEEcc-----------------cccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            667788899999999972                 22334455678899999999999 688899999999999999654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.17  E-value=4.8e-07  Score=73.10  Aligned_cols=232  Identities=11%  Similarity=0.002  Sum_probs=141.7

Q ss_pred             ceeEEEeCC-CCcEEEEEecCC-eEEEEEecCCceEEEEEeccCCCce--EEEEEcCCCCEEEEEeC-----CCeEEEEe
Q 016982           12 CITCHAWSP-DHAMVAFCPNNN-EVHIYKLIQEKWEKLHVLQKHDQIV--SGIDWSVRSNRIVTVSH-----DRNSYVWN   82 (379)
Q Consensus        12 ~i~~~~~s~-~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~vw~   82 (379)
                      .-..++.+| .+..++.+.+-| ...+||..++  +....+....+.-  -.-.||+||++|++.-.     .|.|-|||
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g--~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTG--QLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCC--ceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            345678889 566777887765 4778999887  4444444332221  23579999999988643     47899999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC------------------CCeEEEEEeecCCceeEEEEEeecCC
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG------------------AKTVCICYYEQENNWWVSKLIRKRHD  144 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~v~i~~~~~~~~~~~~~~~~~~~~  144 (379)
                      ... .+...-++..+.-....+.+.|||+.|+++..                  +-++.+.|..++........-...|.
T Consensus        84 ~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   84 AAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ  162 (305)
T ss_pred             CcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence            982 33344444556666788999999988887642                  12233333444442111111113366


Q ss_pred             cCEEEEEEcCCCcEEEEeeCCCe-------EEEEeccccccccccccCCCccCCcccceEEEee-------cCCcceEEE
Q 016982          145 SSVTSVAWHPNNVFLATTSTDGK-------CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------LSFSWAFGV  210 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~d~~-------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~  210 (379)
                      ..+..+++.++|..++..-..|.       +-+++-                    ++.+..+.       .-.+.+-++
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--------------------g~~~~~~~~p~~~~~~l~~Y~gSI  222 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--------------------GGALRLLPAPEEQWRRLNGYIGSI  222 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--------------------CCcceeccCChHHHHhhCCceEEE
Confidence            78899999988876655433332       333321                    12122111       224668999


Q ss_pred             EECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCe
Q 016982          211 KWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNP  270 (379)
Q Consensus       211 ~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~  270 (379)
                      ++++++.++++++ ..+.+.+||..++. ++....  -..+..++-.+++ +++++..+.+
T Consensus       223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~~~--l~D~cGva~~~~~-f~~ssG~G~~  279 (305)
T PF07433_consen  223 AADRDGRLIAVTSPRGGRVAVWDAATGR-LLGSVP--LPDACGVAPTDDG-FLVSSGQGQL  279 (305)
T ss_pred             EEeCCCCEEEEECCCCCEEEEEECCCCC-Eeeccc--cCceeeeeecCCc-eEEeCCCccE
Confidence            9999999887665 67889999988876 323322  2345666666666 6666666554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.14  E-value=3.2e-10  Score=98.96  Aligned_cols=206  Identities=16%  Similarity=0.148  Sum_probs=150.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCC--CEEEEEeCCCeEEEEEeecCC
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQEN  131 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~~~~~~~  131 (379)
                      .+++.++.++|.|+-++.++.-| +.+-|+...-..+.....-..-.|-.+.|+|..  .+-++......-.+|++....
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            45778899999999999998876 667777665333333222233457778888753  344444444555689887665


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEE
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGV  210 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  210 (379)
                      ...+.-.+ .+|...++.+.|+|+. ..+++++.|-.+..||++                 ....++..+..-......+
T Consensus       103 ~~aIef~l-hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r-----------------Sp~~p~ys~~~w~s~asqV  164 (1081)
T KOG0309|consen  103 SNAIEFVL-HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR-----------------SPHRPFYSTSSWRSAASQV  164 (1081)
T ss_pred             ccceEEEE-ecCccceeccccCCCCCcceeeccccccceeeecc-----------------CCCcceeeeecccccCcee
Confidence            43333333 8999999999999976 688999999999999972                 3445566665445567789


Q ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec--CCcEEEEEeCCCeEEEEecCC
Q 016982          211 KWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS--EKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       211 ~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      +|+-....+.+.+..+.|.+||++.+......+++|-..|+.+.|..  .+.++.++.|+.+.+|+.+..
T Consensus       165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            99874333444566778999999999888899999888899999976  466777999999999998753

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=6e-09  Score=92.06  Aligned_cols=185  Identities=13%  Similarity=0.220  Sum_probs=129.5

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      .+.++|++++  +++|+.|+.+|.|++++....   . .+...|+..      ..+|.++++|+.||+|.|-.+-+.+..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence            4667788876  589999999999999998764   3 333445443      667999999999999999999888744


Q ss_pred             eeEEeecCCCceeEEEECCC-----CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           90 PTLVILRLNRAALCVQWSPK-----ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ..+   ....++.+++++|+     .+.+++|+..| +.++.-+--..+... .+ ....++|.++.|  .|+++|-++.
T Consensus       107 ~~~---df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l-~~~eG~I~~i~W--~g~lIAWand  178 (846)
T KOG2066|consen  107 TQY---DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VL-SEGEGPIHSIKW--RGNLIAWAND  178 (846)
T ss_pred             eeE---ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-ee-ecCccceEEEEe--cCcEEEEecC
Confidence            444   35789999999997     56899999888 666543222211111 23 567789999999  5889999887


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc------ceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS------WAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      +| |++||+                  .+.+.+..++....      ....+.|.++.+ |+. |...+|+|..++.
T Consensus       179 ~G-v~vyd~------------------~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~  234 (846)
T KOG2066|consen  179 DG-VKVYDT------------------PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKK  234 (846)
T ss_pred             CC-cEEEec------------------cccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEec
Confidence            77 899997                  33333333322211      234678887665 444 4566788888773

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.12  E-value=1.4e-07  Score=82.08  Aligned_cols=270  Identities=8%  Similarity=0.039  Sum_probs=150.5

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCc
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRA  100 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  100 (379)
                      .+..+++++.+|.|..+|..++  +.+............+..  ++..++.++.++.+..+|..+++..-....   ...
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~~  136 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETG--KRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL---SSE  136 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCC--cEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc---Cce
Confidence            3567888888899999999887  444443332221122222  466788888899999999999875444322   222


Q ss_pred             eeE-EEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC--cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccc
Q 016982          101 ALC-VQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD--SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKG  177 (379)
Q Consensus       101 v~~-~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~  177 (379)
                      +.+ ...  .+..++.++.++.+..+|.++++..+..... ....  ......... + ..++.+..++.+..+|.    
T Consensus       137 ~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~----  207 (377)
T TIGR03300       137 VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRV-TPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDL----  207 (377)
T ss_pred             eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccC-CCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEc----
Confidence            221 111  3456777888999999999887632211110 0000  000111111 2 46777788889988886    


Q ss_pred             cccccccCCCccCCcccceEEEeecC--C-----cceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC
Q 016982          178 VDIKEKKEGTSSDTKFGEQILQLDLS--F-----SWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL  248 (379)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  248 (379)
                                    .+++.+-+....  .     .....+.-+|  .+..+++++.+|.++.||..+++.. .....  .
T Consensus       208 --------------~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~-W~~~~--~  270 (377)
T TIGR03300       208 --------------QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL-WKRDA--S  270 (377)
T ss_pred             --------------cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE-Eeecc--C
Confidence                          333332221100  0     0000011112  2556777888999999999887643 32221  1


Q ss_pred             CeeeEEEecCCcEEEEEeCCCeEEEEecCCC-cEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccc
Q 016982          249 PLRDVLFVSEKMVIGVGFDCNPMVFAADETG-IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSR  327 (379)
Q Consensus       249 ~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (379)
                      ....+.. .++.+++++.++.+..++..... .|+....                                         
T Consensus       271 ~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----------------------------------------  308 (377)
T TIGR03300       271 SYQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDEL-----------------------------------------  308 (377)
T ss_pred             CccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccc-----------------------------------------
Confidence            1122222 24556667778888888875432 3442110                                         


Q ss_pred             ccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          328 TRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       328 ~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                         .+.  ...... .  .    +..|++++.||.|.++|..+++.+..+
T Consensus       309 ---~~~--~~ssp~-i--~----g~~l~~~~~~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       309 ---KYR--QLTAPA-V--V----GGYLVVGDFEGYLHWLSREDGSFVARL  346 (377)
T ss_pred             ---cCC--ccccCE-E--E----CCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence               000  011111 1  1    257888999999999999998887654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=5.9e-08  Score=85.71  Aligned_cols=106  Identities=14%  Similarity=0.319  Sum_probs=74.7

Q ss_pred             eeccCcceeEEEeCCCC------------cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC---C-CEE
Q 016982            6 VHQFAQCITCHAWSPDH------------AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR---S-NRI   69 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~------------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l   69 (379)
                      +-.|...|+.+.|.|-.            -+||++...|.|.+||...+  ..+..+..|.+++..+.|-+.   . ..|
T Consensus        51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~~~l~~~~~~~qdl~W~~~rd~Srd~L  128 (1062)
T KOG1912|consen   51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVINWLSHSNDSVQDLCWVPARDDSRDVL  128 (1062)
T ss_pred             cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhhhhhcCCCcchhheeeeeccCcchhee
Confidence            45678999999998732            25778888999999999886  566778888999999999763   3 456


Q ss_pred             EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEE
Q 016982           70 VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAV  115 (379)
Q Consensus        70 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  115 (379)
                      +.-.....+.+|+..+|+..-..  ........|+.+.| |.+.+..
T Consensus       129 laIh~ss~lvLwntdtG~k~Wk~--~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen  129 LAIHGSSTLVLWNTDTGEKFWKY--DYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             EEecCCcEEEEEEccCCceeecc--ccCCcceeeeeeCCCCcceEEE
Confidence            66666788999999988743332  22234445566666 4333333

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.10  E-value=1e-09  Score=83.92  Aligned_cols=204  Identities=14%  Similarity=0.120  Sum_probs=117.6

Q ss_pred             CCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCCCEEEEEe-----CCCeEEEEeccCCceeeeE
Q 016982           19 SPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTVS-----HDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        19 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~   92 (379)
                      +-.++.++++..||.+.+++.+.- +...+.+.. |.+. .+..+...++.|.++.     .-+..+.|+++..+.....
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~-~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKD-LALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             cccCCceEecCCCceEEEEechHH-Hhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence            335677999999999999987652 122222111 1111 1222223344444432     1234566666544322111


Q ss_pred             EeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEEEeeCCCeEEE
Q 016982           93 VILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTSTDGKCRV  170 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~v  170 (379)
                        ......|.+++-+| ....+++|+.||.+.+||.+....  ....+ ..|+.++..+-|+|. +..|+++++||.+..
T Consensus       176 --~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--p~S~l-~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  176 --KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--PVSLL-KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             --ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--hHHHH-HHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence              11223489999999 456778888899999999988742  23344 789999999999995 588999999999999


Q ss_pred             EeccccccccccccCCCccCCcccceEEE---e----ecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQ---L----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD  232 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d  232 (379)
                      ||..+.-+...+..... ...-.+.+++.   +    ......|+++..  -|..|++|+.-+.|++++
T Consensus       251 wdas~~~l~i~~~~s~~-s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  251 WDASTTFLSISNQASVI-SSWLSGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EcCCCceEEecCccccc-cccccCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence            99753222222111100 00111111111   1    111223444333  377788888878888775

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.07  E-value=6.1e-07  Score=70.36  Aligned_cols=236  Identities=13%  Similarity=0.135  Sum_probs=125.1

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEE-EeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccc
Q 016982          103 CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKL-IRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIK  181 (379)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~  181 (379)
                      .++.+.+|+.||+.- |..|.|-..+..-...+.+. +.......-+.++|+||+..||.+...|+|++||+.+      
T Consensus         2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g------   74 (282)
T PF15492_consen    2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG------   74 (282)
T ss_pred             ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc------
Confidence            356778888887765 55666543332211111111 1133334567899999999999999999999999742      


Q ss_pred             cccCCCccCCcccceEEEee-------cCCcceEEEEECCCC------CEEEEEcCCCeEEEEECCC----CCceeeeee
Q 016982          182 EKKEGTSSDTKFGEQILQLD-------LSFSWAFGVKWSPSG------NTLAYVGHNSMIYFVDDVG----PSPLAQNVA  244 (379)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~------~~l~~~~~d~~i~v~d~~~----~~~~~~~~~  244 (379)
                                   ..+..+.       .-...|..+.|-+-.      ..|++-..+|.++=|-+..    +.+....+.
T Consensus        75 -------------~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs  141 (282)
T PF15492_consen   75 -------------SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS  141 (282)
T ss_pred             -------------ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence                         1111111       113456667665521      2355556788777765422    111222322


Q ss_pred             e---ecCCeeeEEEecCCcEEE-EEeCC-CeEEEEecCCC--cEEEEEEecccccCCCCCccCCCcc-----cccceeec
Q 016982          245 F---RDLPLRDVLFVSEKMVIG-VGFDC-NPMVFAADETG--IWTFIKFLDERKTSSSGPKYGSQFS-----EAFGKLYG  312 (379)
Q Consensus       245 ~---~~~~i~~~~~s~~~~~l~-~~~d~-~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  312 (379)
                      .   ....|.++.++|.-++|. +|... .-........|  .|+++.....-.   .....+....     ..+.++. 
T Consensus       142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---~v~~~~~~~~~~~~~~~~~~~~-  217 (282)
T PF15492_consen  142 FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK---QVTSSEDDITASSKRRGLLRIP-  217 (282)
T ss_pred             ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE---EccccCccccccccccceeecc-
Confidence            2   356799999999888776 33222 11112222222  344433111100   0000000000     0000000 


Q ss_pred             cccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          313 QSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                         ....       ......-.+.|..|. .+||+    ..||+...+|.|.+|++.+....+..
T Consensus       218 ---~~~~-------fs~~~~~~d~i~kmS-lSPdg----~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  218 ---SFKF-------FSRQGQEQDGIFKMS-LSPDG----SLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             ---ceee-------eeccccCCCceEEEE-ECCCC----CEEEEEEcCCeEEEEecCcchhhccc
Confidence               0000       000012356788888 77766    99999999999999999987666544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.9e-07  Score=83.53  Aligned_cols=202  Identities=15%  Similarity=0.114  Sum_probs=135.6

Q ss_pred             EeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc-eEEEEEcCCCCEEEEEeCCC-----eEEEEeccCC----
Q 016982           17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI-VSGIDWSVRSNRIVTVSHDR-----NSYVWNQEGS----   86 (379)
Q Consensus        17 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~----   86 (379)
                      +|++.+..+|.|+.+|.|.+++-.-   +..+.++.+... |..+....+.++|++.+.|+     .+++|+++.-    
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            4668889999999999999887543   566778887777 55554444446888877664     4899998643    


Q ss_pred             --ceeeeEEeec-----CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE
Q 016982           87 --EWVPTLVILR-----LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL  159 (379)
Q Consensus        87 --~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  159 (379)
                        ++.......+     ...++.+++.+.+-+.+|+|-.+|.|..+.=+-.........+......+|+.+.+..+++.+
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence              2221122222     246789999999999999999999998864322111111222214456799999999988764


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +.......|.+|.+.                .++ .....+..|...+.|..+++....+++++ +..+.+||....+.+
T Consensus       187 lFv~Tt~~V~~y~l~----------------gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~c  248 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLS----------------GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPC  248 (933)
T ss_pred             EEEEecceeEEEEec----------------CCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCccee
Confidence            444455679999872                112 23455777788899999998665455554 457999997765543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.03  E-value=3.8e-06  Score=68.45  Aligned_cols=185  Identities=14%  Similarity=0.103  Sum_probs=121.0

Q ss_pred             eeEEEeC-CCCcEEEEEecCCeEEEEEecCCceEEEEEec--c-CCCceEEEEEcCCCCEEEEEeCC--------CeEEE
Q 016982           13 ITCHAWS-PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ--K-HDQIVSGIDWSVRSNRIVTVSHD--------RNSYV   80 (379)
Q Consensus        13 i~~~~~s-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v   80 (379)
                      ...+++. +++++++ +.. +.+.++|..+++.+.+....  . .....+.+++.|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6667777 6655554 444 45666698888666666653  1 34568899999999977776533        45667


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEE-EeCCCeEEEEEeecCCc-eeEEEEEeecCC--cCEEEEEEcCCC
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAV-GSGAKTVCICYYEQENN-WWVSKLIRKRHD--SSVTSVAWHPNN  156 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~--~~v~~~~~~p~~  156 (379)
                      ++.. ++.....   ..-.....++|+|+++.|++ -+..+.|..++++.... ....+.+.....  +..-.+++..+|
T Consensus       120 ~~~~-~~~~~~~---~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  120 IDPD-GKVTVVA---DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EETT-SEEEEEE---EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             ECCC-CeEEEEe---cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            7766 4432222   22355689999999987764 45678898888875442 211222212222  247889999999


Q ss_pred             cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEE-CCCCCEEEEE
Q 016982          157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKW-SPSGNTLAYV  222 (379)
Q Consensus       157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-sp~~~~l~~~  222 (379)
                      ++.++....+.|.+++.                   .++.+..+......+++++| -|+.+.|+..
T Consensus       196 ~l~va~~~~~~I~~~~p-------------------~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDP-------------------DGKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             -EEEEEETTTEEEEEET-------------------TSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             CEEEEEcCCCEEEEECC-------------------CccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            98888888999999984                   47878777766568999999 4676665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=2.7e-09  Score=84.99  Aligned_cols=161  Identities=16%  Similarity=0.199  Sum_probs=117.9

Q ss_pred             EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC---ceeEEEEEeecCCcC
Q 016982           70 VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN---NWWVSKLIRKRHDSS  146 (379)
Q Consensus        70 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~~~  146 (379)
                      ++.+.+-.+.+-|++++.. ..   ...++.|.++.|...+++++.|+.+|.|..+|++.+.   .|.. ..  ..|...
T Consensus       228 fs~G~sqqv~L~nvetg~~-qs---f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~r--lyh~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QS---FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QR--LYHDSS  300 (425)
T ss_pred             ecccccceeEEEEeecccc-cc---cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EE--EEcCcc
Confidence            4556667788999988852 11   2367899999999999999999999999999998763   2322 33  358999


Q ss_pred             EEEEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccce---EEEeecCCcceE--EEEECCCCCEEE
Q 016982          147 VTSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ---ILQLDLSFSWAF--GVKWSPSGNTLA  220 (379)
Q Consensus       147 v~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~--~~~~sp~~~~l~  220 (379)
                      |+++..-. ++++|++.+.+|+|++||+                  +.-++   +.+.++|...-.  -+...+....++
T Consensus       301 vtslq~Lq~s~q~LmaS~M~gkikLyD~------------------R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~  362 (425)
T KOG2695|consen  301 VTSLQILQFSQQKLMASDMTGKIKLYDL------------------RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF  362 (425)
T ss_pred             hhhhhhhccccceEeeccCcCceeEeee------------------hhhhcccceeeeecccccccccccccccccceEE
Confidence            99988776 6789999999999999997                  33344   888888854322  234456677888


Q ss_pred             EEcCCCeEEEEECCCCCceeeeeeeec----CCeeeEEEe
Q 016982          221 YVGHNSMIYFVDDVGPSPLAQNVAFRD----LPLRDVLFV  256 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~~~~~~~~~~----~~i~~~~~s  256 (379)
                      +++.|...+||.+..+. ++.+++...    ..+.+++|.
T Consensus       363 s~GdDcytRiWsl~~gh-Ll~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGH-LLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EccCeeEEEEEecccCc-eeeccCCCCccccccccceehh
Confidence            89999999999998875 445554322    234455553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.01  E-value=1.8e-06  Score=75.28  Aligned_cols=227  Identities=13%  Similarity=0.087  Sum_probs=125.8

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEE-EEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCC
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSG-IDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNR   99 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~   99 (379)
                      ++..+++++.+|.++.+|..++  +.+...... ..+.+ ...  .+..++.++.++.+..||.++++.+-.........
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~  178 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL  178 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence            4566778888999999999887  344333322 22221 112  24567777889999999999987544432211100


Q ss_pred             c---eeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC----cCEEEEEEcC--CCcEEEEeeCCCeEEE
Q 016982          100 A---ALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD----SSVTSVAWHP--NNVFLATTSTDGKCRV  170 (379)
Q Consensus       100 ~---v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~p--~~~~l~~~~~d~~i~v  170 (379)
                      .   ..+...  .+..++.+..++.+..+|.++++..+....- ....    .....+.-+|  .+..++.++.+|.+..
T Consensus       179 ~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~-~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       179 TLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVA-LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA  255 (377)
T ss_pred             eecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccc-cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence            0   011111  1346777888899999888877632211110 0000    0000011111  2456777888999999


Q ss_pred             EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCe
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPL  250 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i  250 (379)
                      +|.                  .+++.+-.....  ....+.  ..+..++.++.+|.++.+|..+++.+.+.-.......
T Consensus       256 ~d~------------------~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~  313 (377)
T TIGR03300       256 LDL------------------RSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQL  313 (377)
T ss_pred             EEC------------------CCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcc
Confidence            996                  455554433311  111222  2466788888999999999988764422211111112


Q ss_pred             eeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982          251 RDVLFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       251 ~~~~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      .+... .++.+++.+.++.+++++....
T Consensus       314 ssp~i-~g~~l~~~~~~G~l~~~d~~tG  340 (377)
T TIGR03300       314 TAPAV-VGGYLVVGDFEGYLHWLSREDG  340 (377)
T ss_pred             ccCEE-ECCEEEEEeCCCEEEEEECCCC
Confidence            22222 2455666778888888886543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=1.6e-09  Score=91.82  Aligned_cols=205  Identities=11%  Similarity=0.107  Sum_probs=137.3

Q ss_pred             EEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC-----ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC
Q 016982           46 KLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS-----EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK  120 (379)
Q Consensus        46 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  120 (379)
                      .+..+.+|...|..++--.+.+-+++++.|++|++|.++..     .....+....|+.+|.++.|-.+.+.++++  |+
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            34567889999998887777888999999999999998643     233566678899999999999888877765  68


Q ss_pred             eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC--CCcEEEEe-eCCCeEEEEeccccccccccccCCCccCCcccceE
Q 016982          121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP--NNVFLATT-STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI  197 (379)
Q Consensus       121 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
                      .|++||.-.+..  +.+.......+.+..+..-|  +...++.+ +...+|+++|.                  +..+..
T Consensus       805 giHlWDPFigr~--Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da------------------Rsce~~  864 (1034)
T KOG4190|consen  805 GIHLWDPFIGRL--LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDA------------------RSCEWT  864 (1034)
T ss_pred             cceeecccccch--hHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeec------------------ccccce
Confidence            899999755442  11111111222223333333  33444444 67889999996                  444444


Q ss_pred             EEe-----ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeE
Q 016982          198 LQL-----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPM  271 (379)
Q Consensus       198 ~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~  271 (379)
                      ..+     .+.+..+.+++..|.|++++.+-..|.|.+.|.++++. +............++ .|..+.|+ +..|..+.
T Consensus       865 ~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqla-apsdq~L~~saldHsla  942 (1034)
T KOG4190|consen  865 CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLA-APSDQALAQSALDHSLA  942 (1034)
T ss_pred             eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhc-CchhHHHHhhcccceeE
Confidence            333     23345688999999999999999999999999998863 333333333333333 24455555 55666666


Q ss_pred             E-EE
Q 016982          272 V-FA  274 (379)
Q Consensus       272 i-~~  274 (379)
                      + |.
T Consensus       943 VnWh  946 (1034)
T KOG4190|consen  943 VNWH  946 (1034)
T ss_pred             eeeh
Confidence            6 44

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.97  E-value=4.1e-10  Score=100.35  Aligned_cols=218  Identities=18%  Similarity=0.202  Sum_probs=148.4

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC--eEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR--NSYVWN   82 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~vw~   82 (379)
                      .++.|...-+|++|+-+.+.|++|+-.|.|++|++.++  ........|..+|+-+.-+-+|..+++.+.-.  -..+|+
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            45678889999999999999999999999999999998  56677789999999999999998776655433  477999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCEEEEEEcCCCcEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~  160 (379)
                      +..-- -+...    -..-.++.|+.....-+.|+......+||+.+...  +...+.  ......-++..|+|+.++++
T Consensus      1174 ~~s~~-~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1174 ASSTG-GPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSP--LQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             ccccc-Ccccc----ccccceeehhhhHHHHHhcccccceEEEecccCcH--HHHhcCcchhhhhhccccccCCCcceEe
Confidence            86521 11111    13456788887655556666666788999998874  111110  12222337788999988776


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                         .||  .+||+                  +..+.++.|...... -.-.|+|+|..++..+     .|||+++-+- +
T Consensus      1247 ---ndG--vLWDv------------------R~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~l-L 1296 (1516)
T KOG1832|consen 1247 ---NDG--VLWDV------------------RIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKL-L 1296 (1516)
T ss_pred             ---eCc--eeeee------------------ccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHH-H
Confidence               355  37997                  444555555433322 2346999999998876     4899988652 2


Q ss_pred             eeeeeecCCeeeEEEecCCcEEE
Q 016982          241 QNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                      ..+..  -.-..+.|...|..+.
T Consensus      1297 h~VP~--Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1297 HSVPS--LDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred             hcCcc--ccceEEEeccCccchh
Confidence            33321  1224567777666554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.97  E-value=3.4e-08  Score=77.88  Aligned_cols=209  Identities=11%  Similarity=0.106  Sum_probs=138.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---eeeeEEeecC------------CCceeEEEECCCC--CEEEEE
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE---WVPTLVILRL------------NRAALCVQWSPKE--NKFAVG  116 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~------------~~~v~~~~~~~~~--~~l~~~  116 (379)
                      ...|+++.|...|.+|++|...|.|.++.-+...   ......++.|            ...|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4578999999999999999999999999754432   1011111222            2457788887654  356777


Q ss_pred             eCCCeEEEEEeecCCce---------------------------------------eEEEEEeecCCcCEEEEEEcCCCc
Q 016982          117 SGAKTVCICYYEQENNW---------------------------------------WVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus       117 ~~d~~v~i~~~~~~~~~---------------------------------------~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      +.|++|++|.+......                                       ...+.....|.-.+.+++|+.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            78999999988654100                                       001111145677788999998877


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-----cceEEEEECCC-CCEEEEEcCCCeEEEE
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-----SWAFGVKWSPS-GNTLAYVGHNSMIYFV  231 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~sp~-~~~l~~~~~d~~i~v~  231 (379)
                      .++++ .|=.|.+|++.....               .-.+..+..|.     .-|++..|+|. ...+...+..|.|++-
T Consensus       186 t~lSa-DdLrINLWnl~i~D~---------------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         186 TLLSA-DDLRINLWNLEIIDG---------------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             eeeec-cceeeeeccccccCC---------------ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            77765 567899998732110               11122333332     34788999995 4556677889999999


Q ss_pred             ECCCCCcee-----ee----------eeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982          232 DDVGPSPLA-----QN----------VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       232 d~~~~~~~~-----~~----------~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      |++...-+.     ..          +..-...|..+.|+++|+++++-.-.++.+|+.+..
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~  311 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA  311 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence            998542111     11          111124578899999999999988889999998754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.96  E-value=4.8e-09  Score=57.97  Aligned_cols=38  Identities=24%  Similarity=0.483  Sum_probs=36.6

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      +++.++.+|...|++++|+|++++|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            67889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.95  E-value=4.9e-07  Score=73.06  Aligned_cols=189  Identities=11%  Similarity=0.114  Sum_probs=128.3

Q ss_pred             EEeCCCCcEEEEEe-----cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-----------------
Q 016982           16 HAWSPDHAMVAFCP-----NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-----------------   73 (379)
Q Consensus        16 ~~~s~~~~~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------   73 (379)
                      -.||+||++|++.-     ..|.|-|||... .++.+..+..|.-.-..+.+.|||+.|+.+.                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            57999999998863     358999999993 3688888988877778899999998887762                 


Q ss_pred             -CCCeEEEEeccCCceeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCCe-----EEEEEeecCCceeEEEEEe-----
Q 016982           74 -HDRNSYVWNQEGSEWVPTLVI--LRLNRAALCVQWSPKENKFAVGSGAKT-----VCICYYEQENNWWVSKLIR-----  140 (379)
Q Consensus        74 -~d~~i~vw~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~-----v~i~~~~~~~~~~~~~~~~-----  140 (379)
                       .+..+.+.|..+++.+....+  ..|...+..+++.++|..++..-..|.     --+.-.+.+..   ...+.     
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~  211 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQ  211 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHH
Confidence             123466677888887777665  347788999999999887666544332     11222222221   11110     


Q ss_pred             -ecCCcCEEEEEEcCCCcEEE-EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCE
Q 016982          141 -KRHDSSVTSVAWHPNNVFLA-TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT  218 (379)
Q Consensus       141 -~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  218 (379)
                       ....+.+-+|++++++.+++ ++-..+.+.+||.                  .++..+.....  ..+..++-.+++ +
T Consensus       212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~------------------~tg~~~~~~~l--~D~cGva~~~~~-f  270 (305)
T PF07433_consen  212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA------------------ATGRLLGSVPL--PDACGVAPTDDG-F  270 (305)
T ss_pred             HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC------------------CCCCEeecccc--CceeeeeecCCc-e
Confidence             23456789999999997775 4556788999996                  66776665543  336677777777 5


Q ss_pred             EEEEcCCCeEEE
Q 016982          219 LAYVGHNSMIYF  230 (379)
Q Consensus       219 l~~~~~d~~i~v  230 (379)
                      +++. ..|.+..
T Consensus       271 ~~ss-G~G~~~~  281 (305)
T PF07433_consen  271 LVSS-GQGQLIR  281 (305)
T ss_pred             EEeC-CCccEEE
Confidence            5544 4454433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.3e-07  Score=77.15  Aligned_cols=245  Identities=11%  Similarity=0.023  Sum_probs=144.8

Q ss_pred             eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEec
Q 016982            6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~   83 (379)
                      +..|...|..++|||..+ ++..++.+..|+|.|+++.  ..+..+..+ ..+.+++|.-+. ++|..|..+|.|.+||+
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            456788999999999776 7888899999999999997  566677766 789999998876 67888889999999999


Q ss_pred             cCCcee-eeEEeecCCCceeEEEECC------CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC
Q 016982           84 EGSEWV-PTLVILRLNRAALCVQWSP------KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        84 ~~~~~~-~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  156 (379)
                      +..+-. ..+...-...+|..++.-+      .|.+++....+  +..|++........ ..+..+..+.+.+++..+..
T Consensus       266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p-~vlele~pG~cismqy~~~s  342 (463)
T KOG1645|consen  266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLP-CVLELEPPGICISMQYHGVS  342 (463)
T ss_pred             cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCC-cccccCCCcceeeeeecCcc
Confidence            876411 1111111223444444322      34444444432  45566544332111 11113456677777777755


Q ss_pred             cEEEEeeCCC-------eEEEEeccccccccccccCCCccCCcccceEEEe-ecC-Cc---c---eEEEEECCCCCEEE-
Q 016982          157 VFLATTSTDG-------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLS-FS---W---AFGVKWSPSGNTLA-  220 (379)
Q Consensus       157 ~~l~~~~~d~-------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---~---v~~~~~sp~~~~l~-  220 (379)
                      +.++......       .+... .     +.           ..+..+..- ..+ .+   +   -..+.-.++.++++ 
T Consensus       343 nh~l~tyRs~pn~p~~r~il~~-~-----d~-----------~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~  405 (463)
T KOG1645|consen  343 NHLLLTYRSNPNFPQSRFILGR-I-----DF-----------RDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV  405 (463)
T ss_pred             ceEEEEecCCCCCccceeeeee-e-----cc-----------ccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence            5555443321       11111 0     11           111111110 000 00   0   01111133445554 


Q ss_pred             EEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec--CCcEEEEEeCCCeEEEEe
Q 016982          221 YVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS--EKMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~d~~~~i~~~  275 (379)
                      ++...+.+.+||..+.. +++++.. ..+|.+++...  .+.+|+.-.|..+.||..
T Consensus       406 ~gd~tn~lil~D~~s~e-vvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  406 VGDSTNELILQDPHSFE-VVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             ecCCcceeEEeccchhh-eeeeccc-CcceeecceeecCCcchhhheecceEEEEec
Confidence            45566899999988876 4577664 47888877655  356888888888888864

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=4.7e-08  Score=80.85  Aligned_cols=287  Identities=14%  Similarity=0.107  Sum_probs=171.4

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecC
Q 016982           53 HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-WVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQE  130 (379)
Q Consensus        53 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~  130 (379)
                      |.+.|+.+.-. -.+++.+++.||.++.|.-..-. ..-......|...+.+++.+-++..+.+.+. |..++++|+..-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            66677766543 35799999999999999755411 1111223457788999999999999999887 999999998875


Q ss_pred             CceeEEEEEeecCCcCEEEEEEcCCC--cEEEEe-eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982          131 NNWWVSKLIRKRHDSSVTSVAWHPNN--VFLATT-STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA  207 (379)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  207 (379)
                      ......+..  ...+.+. ...+|..  ..++.+ -.++.+.++|-.                ....+....-..|..+|
T Consensus        87 DminmiKL~--~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~----------------~d~~q~~~fkklH~sPV  147 (558)
T KOG0882|consen   87 DMINMIKLV--DLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGF----------------GDFCQDGYFKKLHFSPV  147 (558)
T ss_pred             chhhhcccc--cCCCceE-EecCCCCeeeeEEeecccCCCcEEECCc----------------CCcCccceecccccCce
Confidence            521112221  2222222 2223321  133333 357889999852                11223334445688999


Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCc-----eeeee---------eeecCCeeeEEEecCCcEEE-EEeCCCeEE
Q 016982          208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP-----LAQNV---------AFRDLPLRDVLFVSEKMVIG-VGFDCNPMV  272 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~---------~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i  272 (379)
                      ..+.++|-+..+++....|.|.-|.....-+     +...+         ........++.|+|+|..++ .+.|..|++
T Consensus       148 ~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~  227 (558)
T KOG0882|consen  148 KKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG  227 (558)
T ss_pred             EEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence            9999999999999998899999998663110     11111         11234578999999999888 678899999


Q ss_pred             EEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccc
Q 016982          273 FAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT  352 (379)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  352 (379)
                      +....+...+................+.-. .-.+.+      .-+.+.       .+.-|...+..-++|...+    +
T Consensus       228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~-~VelgR------Rmaver-------elek~~~~~~~~~~fdes~----~  289 (558)
T KOG0882|consen  228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLM-HVELGR------RMAVER-------ELEKHGSTVGTNAVFDESG----N  289 (558)
T ss_pred             EEeccchhhhhhhccchhhhhccccccccc-eeehhh------hhhHHh-------hHhhhcCcccceeEEcCCC----C
Confidence            998877544433322111111100000000 000000      000000       1223444443334476665    7


Q ss_pred             eEEEeecCceEEEEeCCCccccccCC
Q 016982          353 RFTTSGLDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       353 ~l~t~~~Dg~v~iW~~~~~~~~~~~~  378 (379)
                      +|+-|+-=| |++.++.+++..+.+|
T Consensus       290 flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  290 FLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             EEEeeccee-EEEEEeecCeEEEEec
Confidence            888877665 7888888888777664

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.91  E-value=4e-06  Score=72.58  Aligned_cols=118  Identities=16%  Similarity=0.133  Sum_probs=80.8

Q ss_pred             CCceeEEEECC-CCCEEEEE----eCCCeE----EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           98 NRAALCVQWSP-KENKFAVG----SGAKTV----CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        98 ~~~v~~~~~~~-~~~~l~~~----~~d~~v----~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                      .....++.|+- +...+.+.    +.+|.+    .+|++...+.. ............+.+++++|+...|+.|+.||.|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence            44556777776 44455443    223432    35555544321 1122225678899999999999999999999999


Q ss_pred             EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      .+||..                    ..+..+....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       284 iLyD~~--------------------~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTT--------------------RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcC--------------------CCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            999961                    112222222345788999999999999999999999997654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.90  E-value=1.6e-05  Score=68.51  Aligned_cols=245  Identities=13%  Similarity=0.080  Sum_probs=139.1

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-----------------------------------------eEEEEEe
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-----------------------------------------WEKLHVL   50 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-----------------------------------------~~~~~~~   50 (379)
                      .|+.+.|+++..-|++|...|.|.||....++                                         +.+...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58999999998899999999999999875321                                         2233334


Q ss_pred             ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeec------CCCceeEEEECC-----CC---CEEEEE
Q 016982           51 QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR------LNRAALCVQWSP-----KE---NKFAVG  116 (379)
Q Consensus        51 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~~~  116 (379)
                      ....++|++++.|.-| +++.|..+|.+.|.|++....+....+..      ....++++.|..     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            4456789999997544 99999999999999998887655544333      234677888862     33   478899


Q ss_pred             eCCCeEEEEEeec-C-CceeEEEEEe--ecCCcCEEEEE-EcCC-----------------C---cEEEEeeCCCeEEEE
Q 016982          117 SGAKTVCICYYEQ-E-NNWWVSKLIR--KRHDSSVTSVA-WHPN-----------------N---VFLATTSTDGKCRVF  171 (379)
Q Consensus       117 ~~d~~v~i~~~~~-~-~~~~~~~~~~--~~~~~~v~~~~-~~p~-----------------~---~~l~~~~~d~~i~v~  171 (379)
                      ...|.+.+|.+.. . ..+. .....  ..+.+++..+. ++.+                 +   +.++....+..++++
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~-v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~  240 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFS-VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF  240 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EE-EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred             eCCCCEEEEEEecCCCCceE-EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence            9999999998863 2 2221 11111  24556666555 3221                 0   123344446778998


Q ss_pred             eccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS-----PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR  246 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  246 (379)
                      ..                  ...+..+...........+.+-     ..+..|++-..+|.+++|.+..-+++ ..+...
T Consensus       241 ~~------------------~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei-~~~~l~  301 (395)
T PF08596_consen  241 KP------------------PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI-KSVSLP  301 (395)
T ss_dssp             -T------------------T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE-EEEE-S
T ss_pred             eC------------------CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh-hcccCC
Confidence            75                  3333333322221222334442     24666777789999999999886644 333321


Q ss_pred             ----cCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          247 ----DLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       247 ----~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                          ...+...+++++|.++.-.+...+.++..-.
T Consensus       302 ~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~  336 (395)
T PF08596_consen  302 PPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG  336 (395)
T ss_dssp             S---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred             CccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence                1235677889999988866666666665443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.89  E-value=8.5e-09  Score=56.95  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=36.2

Q ss_pred             ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982          195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD  232 (379)
Q Consensus       195 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d  232 (379)
                      +++.++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57888999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.89  E-value=1.5e-06  Score=80.97  Aligned_cols=203  Identities=14%  Similarity=0.185  Sum_probs=132.1

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec----cCC
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ----EGS   86 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~----~~~   86 (379)
                      +.|.++.|-.+++-++.+...|.|.+-|.++..++.+..   -...|.+++|+||++.++..+..+++.+-.-    -..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            589999999999999999999999999988864444433   4568999999999999988888777765432    000


Q ss_pred             cee----------------e---eEEee----------------c---CCCceeEEEECCCCCEEEEEe-----CCCeEE
Q 016982           87 EWV----------------P---TLVIL----------------R---LNRAALCVQWSPKENKFAVGS-----GAKTVC  123 (379)
Q Consensus        87 ~~~----------------~---~~~~~----------------~---~~~~v~~~~~~~~~~~l~~~~-----~d~~v~  123 (379)
                      +..                +   .+...                +   ....=+.+.|--||.++|+..     ..+.++
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            000                0   01000                0   011124589999999999843     237899


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcccceEEEe
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL  200 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (379)
                      +||-+ +.    .........+.-.+++|-|.|..+++-.   .|+.|.+|.-.+               .+.++-...+
T Consensus       226 V~drE-g~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG---------------L~hg~f~l~~  285 (1265)
T KOG1920|consen  226 VYDRE-GA----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG---------------LRHGEFVLPF  285 (1265)
T ss_pred             Eeccc-ch----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC---------------ccccccccCC
Confidence            99977 32    1111122233446899999999888754   356788886311               1112222223


Q ss_pred             ecCCcceEEEEECCCCCEEEE---EcCCCeEEEEECCCC
Q 016982          201 DLSFSWAFGVKWSPSGNTLAY---VGHNSMIYFVDDVGP  236 (379)
Q Consensus       201 ~~~~~~v~~~~~sp~~~~l~~---~~~d~~i~v~d~~~~  236 (379)
                      ......+..++|+.++..|++   ......|++|-+.+-
T Consensus       286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            333445899999999999987   445556999986653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.86  E-value=7.5e-06  Score=66.42  Aligned_cols=217  Identities=11%  Similarity=0.024  Sum_probs=124.3

Q ss_pred             CCeEEEEEecCCceEEEEEeccCCCceEEEE--EcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC
Q 016982           31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGID--WSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP  108 (379)
Q Consensus        31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~  108 (379)
                      +|.|..+|..++  +.+....- ...+....  ..+++..+++++.++.|..||..+++..-....   ...+.... ..
T Consensus         2 ~g~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~~~~~~~-~~   74 (238)
T PF13360_consen    2 DGTLSALDPRTG--KELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PGPISGAP-VV   74 (238)
T ss_dssp             TSEEEEEETTTT--EEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SSCGGSGE-EE
T ss_pred             CCEEEEEECCCC--CEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---ccccccee-ee
Confidence            688999999887  45544432 11111222  233566788888999999999999986666543   22222111 22


Q ss_pred             CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCc
Q 016982          109 KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTS  188 (379)
Q Consensus       109 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  188 (379)
                      .+..+++++.++.++.+|..+++..+.....................+..++.+..++.+..+|+               
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~---------------  139 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP---------------  139 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET---------------
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec---------------
Confidence            45667777788899999988887432211110001111222233334778888888999999996               


Q ss_pred             cCCcccceEEEeecCCcc----------e-EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          189 SDTKFGEQILQLDLSFSW----------A-FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~----------v-~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                         ++++.+-........          + ..+.+. ++ .++.++.++.+..+|+.+++.. ....  ...+... ...
T Consensus       140 ---~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~-w~~~--~~~~~~~-~~~  210 (238)
T PF13360_consen  140 ---KTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL-WSKP--ISGIYSL-PSV  210 (238)
T ss_dssp             ---TTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE-EEEC--SS-ECEC-EEC
T ss_pred             ---CCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE-EEec--CCCccCC-cee
Confidence               566666555443211          1 233333 44 6767777775444499988743 2222  2223332 234


Q ss_pred             CCcEEE-EEeCCCeEEEEecCC
Q 016982          258 EKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       258 ~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      ++..|. .+.++.+..|+....
T Consensus       211 ~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  211 DGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             CCTEEEEEETTTEEEEEETTTT
T ss_pred             eCCEEEEEeCCCEEEEEECCCC
Confidence            455444 556889999887654

...

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.86  E-value=3e-06  Score=72.85  Aligned_cols=233  Identities=16%  Similarity=0.151  Sum_probs=126.6

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-------C---------CCceEEEEEcCCCCEEEEEe
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-------H---------DQIVSGIDWSVRSNRIVTVS   73 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~l~~~~   73 (379)
                      ...+....|||+|+.+|... ++.|++++..++....+ +..+       -         -+.-.++-||||+++|+...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            45688899999999999984 57999999877621111 1111       0         01235788999999998764


Q ss_pred             CC-C-----------------------------------eEEEEeccCCceeeeEEe---ecCCCceeEEEECCCCCEEE
Q 016982           74 HD-R-----------------------------------NSYVWNQEGSEWVPTLVI---LRLNRAALCVQWSPKENKFA  114 (379)
Q Consensus        74 ~d-~-----------------------------------~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~  114 (379)
                      .| .                                   .+.++|+.+++....-..   ......+..+.|.++++.|+
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            32 1                                   133445544442211111   12334578889999888444


Q ss_pred             EEe--CC---CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc-CCC-cEEEEeeCCCeEEEEeccccccccccccCCC
Q 016982          115 VGS--GA---KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH-PNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGT  187 (379)
Q Consensus       115 ~~~--~d---~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  187 (379)
                      +.-  .+   -.+.++|..++......+....+.-.......|. +++ .++.....+|.-+||-+.             
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~-------------  266 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD-------------  266 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE-------------
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc-------------
Confidence            332  22   2355666666553222222111222222355554 665 444455567776666542             


Q ss_pred             ccCCcccceEEEeecCCcceEE-EEECCCCCEEE-EEcCC----CeEEEEECC-CCCceeeeeeeecCCeeeEEEecCCc
Q 016982          188 SSDTKFGEQILQLDLSFSWAFG-VKWSPSGNTLA-YVGHN----SMIYFVDDV-GPSPLAQNVAFRDLPLRDVLFVSEKM  260 (379)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~-~~~~d----~~i~v~d~~-~~~~~~~~~~~~~~~i~~~~~s~~~~  260 (379)
                          ..+.....+....-.|.. +.++++++.|. ++..+    ..|+..++. .+.  .+.+......-..+.|||+|+
T Consensus       267 ----~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~--~~~LT~~~~~~~~~~~Spdg~  340 (353)
T PF00930_consen  267 ----LDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE--PKCLTCEDGDHYSASFSPDGK  340 (353)
T ss_dssp             ----TTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE--EEESSTTSSTTEEEEE-TTSS
T ss_pred             ----ccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC--eEeccCCCCCceEEEECCCCC
Confidence                334445566555566744 77888877665 44432    356666666 332  345553333336899999999


Q ss_pred             EEE
Q 016982          261 VIG  263 (379)
Q Consensus       261 ~l~  263 (379)
                      +++
T Consensus       341 y~v  343 (353)
T PF00930_consen  341 YYV  343 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.84  E-value=1.3e-06  Score=75.45  Aligned_cols=136  Identities=19%  Similarity=0.362  Sum_probs=92.8

Q ss_pred             EEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEE----eCCCe----EEEEeccCCceeee-EEeecCCCceeE
Q 016982           34 VHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTV----SHDRN----SYVWNQEGSEWVPT-LVILRLNRAALC  103 (379)
Q Consensus        34 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~----~~d~~----i~vw~~~~~~~~~~-~~~~~~~~~v~~  103 (379)
                      +.++.+..++.+.+...+...++ .++.|+- +.+.+.+.    +.+|.    -.+|++..++..+. ....+.+..+.+
T Consensus       186 l~L~~~~~~klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~  264 (545)
T PF11768_consen  186 LHLLSCSGGKLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC  264 (545)
T ss_pred             EEEEEecCCcEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence            44444444444555555544444 5777876 34555543    23343    45677766543322 122356789999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982          104 VQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK  176 (379)
Q Consensus       104 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~  176 (379)
                      ++++|+...++.|+.||.|.+||...+.    ....  ...-..+.++|+|+|..+++|+..|.+.+||+...
T Consensus       265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  265 CARSPSEDKLVLGCEDGSIILYDTTRGV----TLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EecCcccceEEEEecCCeEEEEEcCCCe----eeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999999999999999999999987764    2222  33455788999999999999999999999998543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.83  E-value=1.2e-05  Score=75.30  Aligned_cols=209  Identities=17%  Similarity=0.306  Sum_probs=135.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec----
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ----  129 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~----  129 (379)
                      +..|.++.|..+.+.++.+...|.|.+-|.++......   ..-...|.+++|+||+..++..+..+++.+-+..-    
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv---g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV---GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeee---eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence            45899999999999999999999999998887753222   33468999999999999999999888877643310    


Q ss_pred             CCc---------------eeE-EEEEeec---------------------CCcCEEEEEEcCCCcEEEEee-----CCCe
Q 016982          130 ENN---------------WWV-SKLIRKR---------------------HDSSVTSVAWHPNNVFLATTS-----TDGK  167 (379)
Q Consensus       130 ~~~---------------~~~-~~~~~~~---------------------~~~~v~~~~~~p~~~~l~~~~-----~d~~  167 (379)
                      .+.               |.- ...+ .+                     ..+.=..+.|.-||.++++..     ....
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQF-RGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccccceecccccceee-ecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            000               000 0001 00                     011123589999999999833     2378


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc---CCCeEEEEECCCCCc--eeee
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG---HNSMIYFVDDVGPSP--LAQN  242 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~v~d~~~~~~--~~~~  242 (379)
                      ++|||-.                   +..-..-....+.-.+++|-|.|..+++-.   .|+.|.+|.-+.-..  ....
T Consensus       224 irV~drE-------------------g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~  284 (1265)
T KOG1920|consen  224 IRVYDRE-------------------GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLP  284 (1265)
T ss_pred             EEEeccc-------------------chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccC
Confidence            9999841                   211111111123346799999999988753   566899998444221  1111


Q ss_pred             eeeecCCeeeEEEecCCcEEEE---EeCCC-eEEEEecCCCcEEEEEE
Q 016982          243 VAFRDLPLRDVLFVSEKMVIGV---GFDCN-PMVFAADETGIWTFIKF  286 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~~~~l~~---~~d~~-~~i~~~~~~~~~~~~~~  286 (379)
                      ......++..++|+.++.+|+.   ...+. +.+|...+-. |-+-..
T Consensus       285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-WYLKq~  331 (1265)
T KOG1920|consen  285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-WYLKQE  331 (1265)
T ss_pred             CcccccchheeeecCCCCceeeeecccccceEEEEEecCeE-EEEEEE
Confidence            2222344899999999999985   44554 8999876643 655443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.83  E-value=2e-07  Score=83.90  Aligned_cols=185  Identities=12%  Similarity=0.066  Sum_probs=130.3

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCc
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRA  100 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  100 (379)
                      ++..++.|+-...+..+|+.+.  +..+...-....|.-++.  +++++.+|...|+|.+-|.++.+.+..+  ..|.+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~--~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~--~aHs~s  219 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTE--KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF--DAHSGS  219 (1118)
T ss_pred             CCcceeecchhhheeeeecccc--eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee--eccccc
Confidence            3455667766677888888876  343333333334655554  4789999999999999999998866665  779999


Q ss_pred             eeEEEECCCCCEEEEEeC---------CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEE
Q 016982          101 ALCVQWSPKENKFAVGSG---------AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRV  170 (379)
Q Consensus       101 v~~~~~~~~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v  170 (379)
                      +.++...  |+.|++++.         |..|+|||++.-..   ..++ .-+.++ .-+.|+|.- ..+++++..|...+
T Consensus       220 iSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~PI-~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  220 ISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LSPI-QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             eeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhc---cCCc-ccccCc-hhhhhcccccceEEEEecccceee
Confidence            9877665  889999875         56689999988663   3333 222222 567788863 67888899999999


Q ss_pred             EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD  232 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d  232 (379)
                      -|..+    .          ......+..+......+..+++|++|+.++.+..+|.|.+|-
T Consensus       293 vd~~~----l----------sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  293 VDTAT----L----------SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccc----c----------CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            88410    0          011111233333345599999999999999999999999996

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=2e-07  Score=82.74  Aligned_cols=182  Identities=14%  Similarity=0.158  Sum_probs=125.7

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee
Q 016982           55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW  134 (379)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  134 (379)
                      ..++|++++  +++|+.|+.+|.|++++....-  ...  ..|...      ..+|.++++|+.||.|.|..+-+.+.  
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~--~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~--  105 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTN--FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE--  105 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccc--cccccc------ccCCceEEEecCCCcEEEeeccCCcc--
Confidence            456677776  6789999999999999876542  111  233332      56799999999999999987777663  


Q ss_pred             EEEEEeecCCcCEEEEEEcCC-----CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE-EEeecCCcceE
Q 016982          135 VSKLIRKRHDSSVTSVAWHPN-----NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAF  208 (379)
Q Consensus       135 ~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~  208 (379)
                       ...  .....++.+++++|+     .+.+++|+..| +.++.-.                 -.+... ..+....++|.
T Consensus       106 -~~~--~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~-----------------wlgnk~~v~l~~~eG~I~  164 (846)
T KOG2066|consen  106 -ITQ--YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN-----------------WLGNKDSVVLSEGEGPIH  164 (846)
T ss_pred             -cee--EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh-----------------hhcCccceeeecCccceE
Confidence             222  345678999999998     47899999988 7776420                 011111 13444578899


Q ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC------CeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL------PLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      ++.|.  |+++|.++.+| |+|||+...+.+ ..++....      ....+.|.++. .|+.|...+|.+....
T Consensus       165 ~i~W~--g~lIAWand~G-v~vyd~~~~~~l-~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  165 SIKWR--GNLIAWANDDG-VKVYDTPTRQRL-TNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK  233 (846)
T ss_pred             EEEec--CcEEEEecCCC-cEEEecccccee-eccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence            99997  88999987665 899998876643 33332222      23467787654 5556777788888765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.80  E-value=3.2e-07  Score=82.67  Aligned_cols=187  Identities=11%  Similarity=0.116  Sum_probs=130.5

Q ss_pred             CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC
Q 016982           67 NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS  146 (379)
Q Consensus        67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~  146 (379)
                      ..++.|+....+..+|+.+.+..+....  ..+.|.-++.  +++.+.+|...|+|.+-|.++.+   ....+ ..|.+.
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~---~iht~-~aHs~s  219 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE---TIHTF-DAHSGS  219 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeec--cCCceEEEEe--cCcEEEeecccceEEeecCCcCc---eeeee-eccccc
Confidence            4566666666788888888765444432  2223555544  58899999999999998888877   56777 899999


Q ss_pred             EEEEEEcCCCcEEEEeeC---------CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC-C
Q 016982          147 VTSVAWHPNNVFLATTST---------DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS-G  216 (379)
Q Consensus       147 v~~~~~~p~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~  216 (379)
                      +.++..  .|+.|++++.         |..|+|||+                  +.-+.+..+..+.++ .-+.|+|. .
T Consensus       220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL------------------Rmmral~PI~~~~~P-~flrf~Psl~  278 (1118)
T KOG1275|consen  220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL------------------RMMRALSPIQFPYGP-QFLRFHPSLT  278 (1118)
T ss_pred             eeeeec--cCCeEEEeecccccccccccchhhhhhh------------------hhhhccCCcccccCc-hhhhhccccc
Confidence            988766  6889999875         556889987                  333333333333332 55778884 4


Q ss_pred             CEEEEEcCCCeEEEEE---CCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEE
Q 016982          217 NTLAYVGHNSMIYFVD---DVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWT  282 (379)
Q Consensus       217 ~~l~~~~~d~~i~v~d---~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~  282 (379)
                      ..+++++..|...+.|   +.++..-+..+...+..+..+++|++|..++ +-.++.+.+|...+...+.
T Consensus       279 t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn  348 (1118)
T KOG1275|consen  279 TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFN  348 (1118)
T ss_pred             ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccC
Confidence            5677888899999999   4444322333333345599999999999999 5678899999866655443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.78  E-value=1.3e-06  Score=75.78  Aligned_cols=186  Identities=18%  Similarity=0.262  Sum_probs=115.9

Q ss_pred             CcceeEEEeCCCCcEEEEEe---cC-CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCe--EEEEe
Q 016982           10 AQCITCHAWSPDHAMVAFCP---NN-NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRN--SYVWN   82 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~---~d-g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--i~vw~   82 (379)
                      ...+..-+|+|++..++.-.   .. ..++++++.+++...+..+.++.   ...+|+|||++|+.+ ..|+.  |.+.|
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEc
Confidence            45677789999998776552   22 46999999988656666655554   467899999877654 45554  67778


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEE--EeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCIC--YYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL  159 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  159 (379)
                      +.+++... +  ....+.-..-.|+|||+.++..+. .|.-.||  +.+...   . ..+ ......-..-.|+|||+++
T Consensus       269 l~~~~~~~-L--t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~---~-~ri-T~~~~~~~~p~~SpdG~~i  340 (425)
T COG0823         269 LDGKNLPR-L--TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ---V-TRL-TFSGGGNSNPVWSPDGDKI  340 (425)
T ss_pred             CCCCccee-c--ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc---e-eEe-eccCCCCcCccCCCCCCEE
Confidence            87776333 2  233344447789999999888765 4554554  444444   2 233 2222223378899999999


Q ss_pred             EEeeCC-Ce--EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC
Q 016982          160 ATTSTD-GK--CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN  225 (379)
Q Consensus       160 ~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  225 (379)
                      +..+.. |.  |.+.|+                  ..+..+..+.. ........|.|+|+.++..+..
T Consensus       341 ~~~~~~~g~~~i~~~~~------------------~~~~~~~~lt~-~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         341 VFESSSGGQWDIDKNDL------------------ASGGKIRILTS-TYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEEeccCCceeeEEecc------------------CCCCcEEEccc-cccCCCCCcCCCCceEEEeccC
Confidence            887753 44  444443                  22221333321 3334567788898888766543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.77  E-value=2e-06  Score=74.61  Aligned_cols=208  Identities=16%  Similarity=0.199  Sum_probs=125.2

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEe---CC-CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeE
Q 016982           48 HVLQKHDQIVSGIDWSVRSNRIVTVS---HD-RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTV  122 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v  122 (379)
                      ..+..-...+..-+|+|++..++..+   .. ..+.++++.+++......   ..+.-...+|+|||++|+.+.. ||..
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~rdg~~  262 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSRDGSP  262 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---cCCccCCccCCCCCCEEEEEECCCCCc
Confidence            33444455677889999998766543   22 359999999987544443   3455567789999998777654 6665


Q ss_pred             E--EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEE
Q 016982          123 C--ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ  199 (379)
Q Consensus       123 ~--i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (379)
                      .  ++|+..+.   ..+ + ....+.-..-.|+|||+.++..+. .|.-.||-..                 ..+.....
T Consensus       263 ~iy~~dl~~~~---~~~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~-----------------~~g~~~~r  320 (425)
T COG0823         263 DIYLMDLDGKN---LPR-L-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYD-----------------LEGSQVTR  320 (425)
T ss_pred             cEEEEcCCCCc---cee-c-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEEC-----------------CCCCceeE
Confidence            4  44555554   222 3 333333347789999988876654 5554555431                 22333333


Q ss_pred             eecCCcceEEEEECCCCCEEEEEcCC-Ce--EEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEE--EeCCCeEEEE
Q 016982          200 LDLSFSWAFGVKWSPSGNTLAYVGHN-SM--IYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGV--GFDCNPMVFA  274 (379)
Q Consensus       200 ~~~~~~~v~~~~~sp~~~~l~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~d~~~~i~~  274 (379)
                      +....+.-....|+|||++++..+.. |.  |.+.|+.++.. .+.+. .........|.++|+.+..  +..+.-.++.
T Consensus       321 iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~  398 (425)
T COG0823         321 LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSGQGGGSVLSL  398 (425)
T ss_pred             eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEeccCCCCceEEE
Confidence            33333323378899999999887643 44  66667666553 23333 3444556788999988773  2233455555


Q ss_pred             ecCCCcEE
Q 016982          275 ADETGIWT  282 (379)
Q Consensus       275 ~~~~~~~~  282 (379)
                      ....+.+.
T Consensus       399 ~s~~g~~~  406 (425)
T COG0823         399 VSLDGRVS  406 (425)
T ss_pred             eeccceeE
Confidence            55544333

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.72  E-value=2.6e-05  Score=68.28  Aligned_cols=225  Identities=12%  Similarity=0.047  Sum_probs=118.8

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCC--C--------ce-EEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD--Q--------IV-SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~--~--------~v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      .+..+++++.+|.+.-+|.++++  .+.......  .        .+ ..+..  .+..++.++.++.+..+|.++++..
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~  143 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGK--EIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVA  143 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCc--EeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCc
Confidence            35567777788999999998873  433332111  0        00 01111  2457777888999999999999754


Q ss_pred             eeEEeecCCCceeE-EEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC-cCEEEEEEcCCCcEEEEeeCCCe
Q 016982           90 PTLVILRLNRAALC-VQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD-SSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        90 ~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      -....   ...+.+ ...  .+..++++..++.+.-+|.++++..+....-..... ........  .+..++.++.++.
T Consensus       144 W~~~~---~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~  216 (394)
T PRK11138        144 WQTKV---AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGR  216 (394)
T ss_pred             ccccC---CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCE
Confidence            44432   122211 111  245677778889999999888874222111000000 00001111  1234666777888


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCC-------cceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCc
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-------SWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      +..+|..                  +++.+-......       .....+.-+|  .+..++.++.+|.+..+|..+++.
T Consensus       217 v~a~d~~------------------~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~  278 (394)
T PRK11138        217 VSAVLME------------------QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI  278 (394)
T ss_pred             EEEEEcc------------------CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence            8888752                  222221111000       0011111223  245666777899999999988875


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      ..+. ..  .....+.. .++.+++++.++.+..++....
T Consensus       279 ~W~~-~~--~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        279 VWKR-EY--GSVNDFAV-DGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             EEee-cC--CCccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence            4222 11  11112222 2456666777888887776543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.72  E-value=6.4e-06  Score=72.56  Aligned_cols=147  Identities=11%  Similarity=0.073  Sum_probs=100.9

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      .|.--+++..+++++.|+.-|.+++|+-..+.. ......+-.+.+..+..+++..++|.|+..|.|.++.++.......
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            344445566789999999999999999887632 2223333445666777899888899999999999998876532222


Q ss_pred             EEe----ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc-eeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           92 LVI----LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN-WWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        92 ~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ...    ..|+..|++++|++++..+++|...|.|.+-.++.... ......+ ....+.|..+... ++.+|++
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i-l~~ds~IVQlD~~-q~~LLVS  186 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI-LSEDSEIVQLDYL-QSYLLVS  186 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee-eccCcceEEeecc-cceehHh
Confidence            211    23678999999999999999999999999887776211 0012222 3455677777664 3444443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=3.3e-06  Score=75.93  Aligned_cols=201  Identities=12%  Similarity=0.089  Sum_probs=131.4

Q ss_pred             EcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCc-eeEEEECCCCCEEEEEeCCC-----eEEEEEeecCCce--
Q 016982           62 WSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRA-ALCVQWSPKENKFAVGSGAK-----TVCICYYEQENNW--  133 (379)
Q Consensus        62 ~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~--  133 (379)
                      |++.+..++.|+.+|.|.+++-.- +....+  ..+... |..+-...+.++|++.+.|+     .+++|+++.....  
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~f--qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSSF-QLIRGF--QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EcCCCceEEEeeccccEEEecccc-eeeehh--eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            677888999999999888776322 222233  344444 44443333346777777654     4899999765311  


Q ss_pred             -eEE---EEEe---ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982          134 -WVS---KLIR---KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW  206 (379)
Q Consensus       134 -~~~---~~~~---~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (379)
                       .+.   +.+.   .....++.+++.+.+-+.+|+|-.+|.|..+.-     |.-.         ..+....-......+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G-----Di~R---------Drgsr~~~~~~~~~p  173 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG-----DILR---------DRGSRQDYSHRGKEP  173 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC-----cchh---------ccccceeeeccCCCC
Confidence             122   1211   113567889999999899999999999998853     1110         111111112223678


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982          207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG  279 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~  279 (379)
                      |+.+++..+++.++.......|.+|.+.+..+..+.+..++.++.+..|++...-+.++.+..+.+|+.++.+
T Consensus       174 ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  174 ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRG  246 (933)
T ss_pred             ceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcc
Confidence            9999999999885555566789999988655455667788889999999886554555566678888877644

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.70  E-value=4.3e-05  Score=61.08  Aligned_cols=202  Identities=15%  Similarity=0.224  Sum_probs=113.4

Q ss_pred             eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEE--eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHV--LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      +-+-...+..++|+|+.+ ++++....+.|..++.++   +.++.  +.+ .+..-.+++..++.++++.-.++.+.+++
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G---~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG---KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC---CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            445566799999999755 666677778888777653   34444  343 24568899987777777665688999998


Q ss_pred             ccCCc----e--eeeEEe--e-cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec---CCceeEEEEEe----ecCCcC
Q 016982           83 QEGSE----W--VPTLVI--L-RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ---ENNWWVSKLIR----KRHDSS  146 (379)
Q Consensus        83 ~~~~~----~--~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~----~~~~~~  146 (379)
                      +....    .  ...+.+  . .++..+..++|.|.++.|+++.+.....+|.++.   ...........    ......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            84321    0  111211  1 2456789999999888888888877788888775   22111111100    123346


Q ss_pred             EEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC---------cceEEEEECCCC
Q 016982          147 VTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF---------SWAFGVKWSPSG  216 (379)
Q Consensus       147 v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~  216 (379)
                      +.+++++|.. ++++....+..+..+|.                   .++.+..+....         ...-.++|.++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~-------------------~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDR-------------------QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-T-------------------T--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECC-------------------CCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            7899999965 66677777888888884                   455544443222         235789999999


Q ss_pred             CEEEEEcCCCeEEEE
Q 016982          217 NTLAYVGHNSMIYFV  231 (379)
Q Consensus       217 ~~l~~~~~d~~i~v~  231 (379)
                      ++.++ ++-+..++|
T Consensus       234 ~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  234 NLYIV-SEPNLFYRF  247 (248)
T ss_dssp             -EEEE-ETTTEEEEE
T ss_pred             CEEEE-cCCceEEEe
Confidence            76665 455555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.70  E-value=4.3e-05  Score=66.99  Aligned_cols=228  Identities=11%  Similarity=0.061  Sum_probs=122.5

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCce
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA  101 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v  101 (379)
                      +..++.++.+|.++-+|.++++  .+...........+....  +..++.+..++.+.-+|.++++..-...........
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGE--VAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCC--CcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence            4566677788999999998873  333333222111111222  446777788899999999999855444321100000


Q ss_pred             eEEEECC--CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC-Cc---CEEEEEEcC--CCcEEEEeeCCCeEEEEec
Q 016982          102 LCVQWSP--KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH-DS---SVTSVAWHP--NNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       102 ~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-~~---~v~~~~~~p--~~~~l~~~~~d~~i~v~d~  173 (379)
                      . ..-+|  .+..++.++.++.+..+|..+++..+..... ... ..   ....+.-+|  .+..++.++.+|.+..+|.
T Consensus       196 ~-~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~-~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        196 R-GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS-QPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL  273 (394)
T ss_pred             c-CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccc-cCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence            0 00112  1345677778898988888777642222111 000 00   011111122  2445666778899988886


Q ss_pred             cccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeE
Q 016982          174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDV  253 (379)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~  253 (379)
                                        .+++.+-....  .....+..  .+..++.++.+|.+..+|..+++.+...-........+.
T Consensus       274 ------------------~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp  331 (394)
T PRK11138        274 ------------------RSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP  331 (394)
T ss_pred             ------------------CCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence                              44544333221  11111222  456777788899999999988764322211111112222


Q ss_pred             EEecCCcEEEEEeCCCeEEEEecCC
Q 016982          254 LFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       254 ~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      .. -++.+++...++.+..++....
T Consensus       332 ~v-~~g~l~v~~~~G~l~~ld~~tG  355 (394)
T PRK11138        332 VL-YNGYLVVGDSEGYLHWINREDG  355 (394)
T ss_pred             EE-ECCEEEEEeCCCEEEEEECCCC
Confidence            22 2677777888888887776543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.68  E-value=5.1e-09  Score=90.26  Aligned_cols=203  Identities=13%  Similarity=0.194  Sum_probs=132.4

Q ss_pred             cceeEEEeCCCC--cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC-CEEEEEe----CCCeEEEEec
Q 016982           11 QCITCHAWSPDH--AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS-NRIVTVS----HDRNSYVWNQ   83 (379)
Q Consensus        11 ~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~----~d~~i~vw~~   83 (379)
                      ..+.|++++-+.  ..+++|..+|.|-+-........-....++|..++++++|++-. +.||.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            456777776533  47889999999999887754323234456788899999999854 5666552    3567999999


Q ss_pred             cCC--ceeeeEEeec-CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEE
Q 016982           84 EGS--EWVPTLVILR-LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFL  159 (379)
Q Consensus        84 ~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l  159 (379)
                      .++  .+.....+.. ......+++|-.+.+.+.+|...+.+.++|++....    ... .-....+..+...| .++++
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~----~~~-svnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD----SVS-SVNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh----hhh-hhhhhhcccceecCCCCCce
Confidence            887  2111111122 334566888988889999999999999999885431    111 22334566778888 66777


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC----CcceEEEEECCC--CCEEEEEcCCCeEEEEEC
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS----FSWAFGVKWSPS--GNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~  233 (379)
                      ++-. ||.|.+||..                .+...++..+...    ...+..++|.|.  |...+.....++|++||+
T Consensus       212 cs~~-dg~iAiwD~~----------------rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTY----------------RNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             eccc-cCceeeccch----------------hhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            7655 9999999931                1222222222111    234889999994  443333445689999987


Q ss_pred             CC
Q 016982          234 VG  235 (379)
Q Consensus       234 ~~  235 (379)
                      ..
T Consensus       275 ~~  276 (783)
T KOG1008|consen  275 CV  276 (783)
T ss_pred             cc
Confidence            53

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=1.7e-07  Score=75.06  Aligned_cols=141  Identities=9%  Similarity=0.055  Sum_probs=102.7

Q ss_pred             EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC----ceeeeEEeecCCCce
Q 016982           26 AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS----EWVPTLVILRLNRAA  101 (379)
Q Consensus        26 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~~~v  101 (379)
                      ++.+.+..|-+-+++++   ..+.|. ..+.|.++.|...++++..|..+|.|...|++.+    .+....  .-|...|
T Consensus       228 fs~G~sqqv~L~nvetg---~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--lyh~Ssv  301 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETG---HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--LYHDSSV  301 (425)
T ss_pred             ecccccceeEEEEeecc---cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--EEcCcch
Confidence            33445678888899886   334444 4668999999988999999999999999999765    221211  3488899


Q ss_pred             eEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE--EEEcCCCcEEEEeeCCCeEEEEec
Q 016982          102 LCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS--VAWHPNNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       102 ~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~p~~~~l~~~~~d~~i~v~d~  173 (379)
                      +++..-. ++.+|++.+.+|.|++||++.-+...-.... .+|-..-.-  +-..+....+++++.|...+||.+
T Consensus       302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl  375 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL  375 (425)
T ss_pred             hhhhhhccccceEeeccCcCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEccCeeEEEEEec
Confidence            9988776 7889999999999999999876632223333 555433222  233455678888999999999997

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=1.3e-06  Score=78.45  Aligned_cols=113  Identities=13%  Similarity=0.146  Sum_probs=86.3

Q ss_pred             eeEEEeCCCCcEEEEEe----cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           13 ITCHAWSPDHAMVAFCP----NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~----~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      -+-.+|+|...+||+++    +.|.|.||-- ++  ++.+... .+-.+++++|+|..-.|+.+-.-|.+.+|...+.+.
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfad-tG--EPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFAD-TG--EPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEec-CC--CCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence            34467999999999885    3688999853 33  2222111 122356799999988889988889999999887764


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN  131 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~  131 (379)
                      ...  ...|+.++..+.||++|+.++++..-|.+.+|.++...
T Consensus        94 htv--~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g  134 (1416)
T KOG3617|consen   94 HTV--VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG  134 (1416)
T ss_pred             eee--ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence            333  35799999999999999999999999999999887543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.61  E-value=4.9e-05  Score=60.75  Aligned_cols=207  Identities=10%  Similarity=0.094  Sum_probs=114.7

Q ss_pred             EEeccCCCceEEEEEcCCCCE-EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982           48 HVLQKHDQIVSGIDWSVRSNR-IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY  126 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~  126 (379)
                      ..+.+-...+..++|+|+.+. +++....+.|.-++.+ ++.++.+.+.+ .+....+++..++.++++--.++.+.+++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            455666667999999998664 5556677788888864 67677766543 46788999987777666655689999988


Q ss_pred             eecCCc---eeEEEEEe----ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE-
Q 016982          127 YEQENN---WWVSKLIR----KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-  198 (379)
Q Consensus       127 ~~~~~~---~~~~~~~~----~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-  198 (379)
                      +.....   ....+.+.    ..+...+..++|+|.++.|+.+-+..-..+|.+....               ....+. 
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~---------------~~~~~~~  157 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP---------------GGFDLFV  157 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT----------------SS--EE
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc---------------Cccceee
Confidence            844321   00111121    1345668999999988777777776667777653100               000000 


Q ss_pred             -E------eecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeeeeec---------CCeeeEEEecCCcE
Q 016982          199 -Q------LDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD---------LPLRDVLFVSEKMV  261 (379)
Q Consensus       199 -~------~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~  261 (379)
                       .      .......+.+++++|. +.+++.+.....|..+|... + .+..+.-..         ...-.|+|.++|++
T Consensus       158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G-~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L  235 (248)
T PF06977_consen  158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG-R-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL  235 (248)
T ss_dssp             EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred             ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC-C-EEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence             0      1112335788999994 66777778888999999443 3 223332111         23567999999998


Q ss_pred             EEEEeCCCeEEE
Q 016982          262 IGVGFDCNPMVF  273 (379)
Q Consensus       262 l~~~~d~~~~i~  273 (379)
                      .+++.-+..++|
T Consensus       236 YIvsEpNlfy~f  247 (248)
T PF06977_consen  236 YIVSEPNLFYRF  247 (248)
T ss_dssp             EEEETTTEEEEE
T ss_pred             EEEcCCceEEEe
Confidence            888866544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.61  E-value=8.2e-05  Score=64.97  Aligned_cols=224  Identities=13%  Similarity=0.148  Sum_probs=115.7

Q ss_pred             EEeCCCCcEEEEEecC-----------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982           16 HAWSPDHAMVAFCPNN-----------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ++.+|.|..+|....+           ..|.||+....   ++..+.-..+.|.++.|+.+. .|+....||.++++|+.
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~---ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK---LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC---EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            4566777777766443           15888888764   444444334789999998865 55566789999999987


Q ss_pred             CCceeeeEEee--cCCCce-----eEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--ec-----CCc-CEEE
Q 016982           85 GSEWVPTLVIL--RLNRAA-----LCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR--KR-----HDS-SVTS  149 (379)
Q Consensus        85 ~~~~~~~~~~~--~~~~~v-----~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~-----~~~-~v~~  149 (379)
                      ...   .+...  .....|     ....+..+|  +++-..++.+.+.  .........+.+.  ..     +.. ....
T Consensus       110 G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~  182 (410)
T PF04841_consen  110 GEF---QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTV  182 (410)
T ss_pred             Cce---eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEE--eCccccchhhccccCCCccccccccccccc
Confidence            443   22111  011122     222333344  3333344555443  2221100011110  00     000 0000


Q ss_pred             -EEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeE
Q 016982          150 -VAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI  228 (379)
Q Consensus       150 -~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i  228 (379)
                       ..++.+....+....++.+.+.+-                  ...+.   +. ..+++..++.||+|+++|.-..+|.+
T Consensus       183 i~~l~~~~~~~i~~~~g~~i~~i~~------------------~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l  240 (410)
T PF04841_consen  183 IPLLSSDRVVEILLANGETIYIIDE------------------NSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNL  240 (410)
T ss_pred             ceEeecCcceEEEEecCCEEEEEEc------------------ccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCE
Confidence             223334444444444555554432                  11011   21 24579999999999999999999999


Q ss_pred             EEEECCCCCceeeeeeee-cCCeeeEEEecCCcEEEEEeCCCeEEEE
Q 016982          229 YFVDDVGPSPLAQNVAFR-DLPLRDVLFVSEKMVIGVGFDCNPMVFA  274 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~d~~~~i~~  274 (379)
                      .+....-.+ ....+... ......+.|.-+...++ .....+.+..
T Consensus       241 ~v~ssDf~~-~~~e~~~~~~~~p~~~~WCG~dav~l-~~~~~l~lvg  285 (410)
T PF04841_consen  241 WVVSSDFSE-KLCEFDTDSKSPPKQMAWCGNDAVVL-SWEDELLLVG  285 (410)
T ss_pred             EEEECcccc-eeEEeecCcCCCCcEEEEECCCcEEE-EeCCEEEEEC
Confidence            988754333 22333322 34567788876544332 2233444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.60  E-value=1.6e-08  Score=87.26  Aligned_cols=202  Identities=12%  Similarity=0.074  Sum_probs=129.7

Q ss_pred             CCceEEEEEcCCC--CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeC----CCeEEEEE
Q 016982           54 DQIVSGIDWSVRS--NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSG----AKTVCICY  126 (379)
Q Consensus        54 ~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~v~i~~  126 (379)
                      ...+.|++++-+.  ..++.|..+|.|.+-.+....-.......++..++++++|++ |.+.||.|-.    |-.+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3456777776544  467888899999999887654332233356778999999998 6677777743    66799999


Q ss_pred             eecCCceeEEEE-EeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982          127 YEQENNWWVSKL-IRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS  205 (379)
Q Consensus       127 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
                      +.+.-..+.... +..+.......++|..+.+++++|.....+.++|++                 .......  .....
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR-----------------qs~~~~~--svnTk  196 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR-----------------QSLDSVS--SVNTK  196 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhh-----------------hhhhhhh--hhhhh
Confidence            988721111111 102233455688998888999999999999999872                 1111111  12234


Q ss_pred             ceEEEEECC-CCCEEEEEcCCCeEEEEE-CCCCCceeeeeeeecC----CeeeEEEecC--CcEEEEE-eCCCeEEEEe
Q 016982          206 WAFGVKWSP-SGNTLAYVGHNSMIYFVD-DVGPSPLAQNVAFRDL----PLRDVLFVSE--KMVIGVG-FDCNPMVFAA  275 (379)
Q Consensus       206 ~v~~~~~sp-~~~~l~~~~~d~~i~v~d-~~~~~~~~~~~~~~~~----~i~~~~~s~~--~~~l~~~-~d~~~~i~~~  275 (379)
                      .+..+..+| .+.|+++.. ||.|.+|| .++-+.+++.+.....    .+..++|+|.  |.+.+.. ..+.|+++..
T Consensus       197 ~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  197 YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            577788899 788887654 99999999 4443333333332222    4889999995  3333333 3345555554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.56  E-value=0.00035  Score=60.21  Aligned_cols=95  Identities=22%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             CCCCcEEEEEe---------cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           19 SPDHAMVAFCP---------NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        19 s~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      |||+++++...         ..+.+.|||+.+++   ...+......+....|+|+|+.++... ++.|.+++..++...
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence            68898887742         24678999999973   333333356788999999999998876 578999998777432


Q ss_pred             eeEEeecC----------------CCceeEEEECCCCCEEEEEeC
Q 016982           90 PTLVILRL----------------NRAALCVQWSPKENKFAVGSG  118 (379)
Q Consensus        90 ~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~  118 (379)
                      + +...+.                -+.-..+-||||+++|+....
T Consensus        77 ~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   77 Q-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             E-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             E-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            2 222220                112357889999999887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=1.2e-06  Score=78.53  Aligned_cols=72  Identities=19%  Similarity=0.356  Sum_probs=63.0

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      .+++++|+|..-.|+.|-.-|.+.+|...+.  +.......|..+|..+.|||+|..++++..-|.+.+|....
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            3567999998888999988999999998876  55556677999999999999999999999999999998763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.56  E-value=5.5e-05  Score=61.34  Aligned_cols=191  Identities=14%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecC-C-
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL-N-   98 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~-   98 (379)
                      ++..+++++.++.++.||..++  +.+..... ...+.... ...+..++.++.++.+..+|..+++..-....... . 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCC--CEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccc
Confidence            5666777788999999999888  44444443 22211111 22355677777888999999999986555321111 1 


Q ss_pred             CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC-CcC------EEEEEEcCCCcEEEEeeCCCe-EEE
Q 016982           99 RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH-DSS------VTSVAWHPNNVFLATTSTDGK-CRV  170 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-~~~------v~~~~~~p~~~~l~~~~~d~~-i~v  170 (379)
                      ...........+..++++..++.|..+|.++++..+....- ... ...      +..-....++ .+..++.++. +.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~  188 (238)
T PF13360_consen  111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV  188 (238)
T ss_dssp             STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE
T ss_pred             ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE
Confidence            11122223334778888888999999998888732111110 101 011      1122222244 5666666665 444


Q ss_pred             EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                       |+                  .+++.+-...  ...+..+ ..+++..|+.++.++.|..||+.+++..
T Consensus       189 -d~------------------~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  189 -DL------------------ATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             -ET------------------TTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             -EC------------------CCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence             86                  5555443222  2222221 3456777887779999999999998643

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.53  E-value=2.8e-05  Score=68.69  Aligned_cols=118  Identities=18%  Similarity=0.144  Sum_probs=88.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee
Q 016982           55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW  134 (379)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  134 (379)
                      ..|.--+++..+++|+.|+.-|.+++|+-..++... +......+.+..+..+++..++|.|+..|.|.++.++...+..
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            344444556678899999999999999988775322 2212244566777889999999999999999999887754321


Q ss_pred             E--EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982          135 V--SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       135 ~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~  173 (379)
                      .  .......|...|++++|++++..+.+|...|.|..-.+
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            1  12222457889999999999999999999999998876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=8.2e-05  Score=65.07  Aligned_cols=229  Identities=15%  Similarity=0.215  Sum_probs=110.5

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE-eccCCc
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW-NQEGSE   87 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw-~~~~~~   87 (379)
                      ..-.+..+.++|+|++++++ .+|...||....-  .....     +.-....|.+.+ .+|+-..+++|.++ +++...
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~--r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW--RNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT--EEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC--ccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence            44568899999999999985 6788889884432  22221     234578899854 56776778889996 443221


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                       ...+..   ...+..+-.   |..|+..+.+ .|.+||+.+.+   +.+.+   .-.+|..+.|++++.+++..+.+ .
T Consensus       102 -~k~i~~---~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~---~i~~i---~v~~vk~V~Ws~~g~~val~t~~-~  166 (443)
T PF04053_consen  102 -VKSIKL---PFSVEKIFG---GNLLGVKSSD-FICFYDWETGK---LIRRI---DVSAVKYVIWSDDGELVALVTKD-S  166 (443)
T ss_dssp             -T--------SS-EEEEE----SSSEEEEETT-EEEEE-TTT-----EEEEE---SS-E-EEEEE-TTSSEEEEE-S--S
T ss_pred             -ceEEcC---CcccceEEc---CcEEEEECCC-CEEEEEhhHcc---eeeEE---ecCCCcEEEEECCCCEEEEEeCC-e
Confidence             112221   223344332   8878777654 89999999887   45555   22348999999999999988755 5


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD  247 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  247 (379)
                      +.+++........ .+.      .--......+..-...|.+..|..+  .++..... .++.+  ..+.  ...+..-.
T Consensus       167 i~il~~~~~~~~~-~~~------~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge--~~~i~~ld  232 (443)
T PF04053_consen  167 IYILKYNLEAVAA-IPE------EGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGE--TGIIAHLD  232 (443)
T ss_dssp             EEEEEE-HHHHHH-BTT------TB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTE--EEEEEE-S
T ss_pred             EEEEEecchhccc-ccc------cCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCC--cceEEEcC
Confidence            7777642110000 000      0000122222222456888888866  44444444 66653  3332  12222223


Q ss_pred             CCeeeEEEecC-CcEEEEEeCCCeEEEEe
Q 016982          248 LPLRDVLFVSE-KMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       248 ~~i~~~~~s~~-~~~l~~~~d~~~~i~~~  275 (379)
                      .++.=+...++ +++++.-.+..+..+..
T Consensus       233 ~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  233 KPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             S--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             CceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            45555555553 33333445555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.50  E-value=0.00027  Score=55.15  Aligned_cols=98  Identities=11%  Similarity=0.022  Sum_probs=61.3

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCce
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA  101 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v  101 (379)
                      |++++.|+..|.+++.+.+++  .....+.....-=......+++..|..++.|++.+..|..+..++-..  +-..+--
T Consensus        63 gdfVV~GCy~g~lYfl~~~tG--s~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks--kcgG~~f  138 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTG--SQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS--KCGGGTF  138 (354)
T ss_pred             CCEEEEEEccCcEEEEEecch--hheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec--ccCCcee
Confidence            567888999999999999987  344444332211122345678899999999999999999888754443  2222223


Q ss_pred             eEEEECC-CCCEEEEEeCCCeEEE
Q 016982          102 LCVQWSP-KENKFAVGSGAKTVCI  124 (379)
Q Consensus       102 ~~~~~~~-~~~~l~~~~~d~~v~i  124 (379)
                      .+-+..| ++. |..+...|.+.-
T Consensus       139 ~sP~i~~g~~s-ly~a~t~G~vla  161 (354)
T KOG4649|consen  139 VSPVIAPGDGS-LYAAITAGAVLA  161 (354)
T ss_pred             ccceecCCCce-EEEEeccceEEE
Confidence            3445555 444 333444455433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.49  E-value=0.00028  Score=63.07  Aligned_cols=169  Identities=10%  Similarity=-0.004  Sum_probs=101.0

Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  151 (379)
                      +.+.+.|.++.+....+..   .+....+.++|+|+++++.+.+    ..+...+.....   ....+   ....+  .+
T Consensus       215 ~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d---~~vvf---ni~~i--ea  283 (635)
T PRK02888        215 SLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD---WVVVF---NIARI--EE  283 (635)
T ss_pred             EEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeeccccCc---eEEEE---chHHH--HH
Confidence            4566777776665444433   3355678899999999888632    122222211111   00111   00000  13


Q ss_pred             EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcc-----cceEEEeecCCcceEEEEECCCCCEEEEEc-CC
Q 016982          152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKF-----GEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HN  225 (379)
Q Consensus       152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d  225 (379)
                      +.++|++...  .++.|.+.|.                  .+     .+.+..+.. ......++++|||+++++++ .+
T Consensus       284 ~vkdGK~~~V--~gn~V~VID~------------------~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        284 AVKAGKFKTI--GGSKVPVVDG------------------RKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             hhhCCCEEEE--CCCEEEEEEC------------------CccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCC
Confidence            3456776655  3678999996                  33     234444443 45578999999999988766 58


Q ss_pred             CeEEEEECCCCCc-----------eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          226 SMIYFVDDVGPSP-----------LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       226 ~~i~v~d~~~~~~-----------~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      .++.|+|+.+.+.           +...... +......+|.++|...+ .--|..+..|+...
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            8999999887543           2223322 33445788999887555 45677888898664

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.47  E-value=0.0005  Score=56.80  Aligned_cols=177  Identities=15%  Similarity=0.094  Sum_probs=104.4

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEeccCCceeeeEEeecC-C--
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------HDRNSYVWNQEGSEWVPTLVILRL-N--   98 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~-~--   98 (379)
                      +.++++|.+++  +.+-.+..-  -.-.+..+|+++.+++++          ..-.|.+||..+-.....+.+... .  
T Consensus        17 ~rv~viD~d~~--k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSG--KLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTT--EEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred             ceEEEEECCCC--cEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence            47899998887  455444432  233467899999888754          233599999999887776665432 1  


Q ss_pred             --CceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-CcEEEEeeCCCeEEEEec
Q 016982           99 --RAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTSTDGKCRVFST  173 (379)
Q Consensus        99 --~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~v~d~  173 (379)
                        .....++++.|++++++...  .-+|.|.|+..++   ....+  .-.+ +..+  -|. ++.|.+-+.||.+.-..+
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k---vv~ei--~~PG-C~~i--yP~~~~~F~~lC~DGsl~~v~L  164 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK---VVGEI--DTPG-CWLI--YPSGNRGFSMLCGDGSLLTVTL  164 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE---EEEEE--EGTS-EEEE--EEEETTEEEEEETTSCEEEEEE
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc---eeeee--cCCC-EEEE--EecCCCceEEEecCCceEEEEE
Confidence              12234577888887777543  4567787777766   34443  1222 2222  232 245778888999888877


Q ss_pred             cccccccccccCCCccCCcccceEE----EeecCCcc-eEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          174 FIKGVDIKEKKEGTSSDTKFGEQIL----QLDLSFSW-AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      .                 ..++...    .|.....+ +..-++...+..++..+.+|.|+-.|+....
T Consensus       165 d-----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~  216 (342)
T PF06433_consen  165 D-----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS  216 (342)
T ss_dssp             T-----------------STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred             C-----------------CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence            3                 2232221    12222222 2344555556666667899999999987764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=1.3e-05  Score=65.95  Aligned_cols=74  Identities=14%  Similarity=0.123  Sum_probs=60.7

Q ss_pred             ecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEe
Q 016982           95 LRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFS  172 (379)
Q Consensus        95 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d  172 (379)
                      ..+...|.+++|+|..+ ++..++.+..|+|.|+++..   +...+ ..+ ..+++++|.-+. +++..|..+|.|.|||
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~---~vssy-~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC---VVSSY-IAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccce---eeehe-ecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            55678899999999766 78889999999999999876   34443 444 789999999876 6777788899999999


Q ss_pred             c
Q 016982          173 T  173 (379)
Q Consensus       173 ~  173 (379)
                      +
T Consensus       265 ~  265 (463)
T KOG1645|consen  265 M  265 (463)
T ss_pred             c
Confidence            7

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.44  E-value=0.0005  Score=61.94  Aligned_cols=109  Identities=10%  Similarity=0.032  Sum_probs=60.6

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCC------ceE--EEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ------IVS--GIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~   93 (379)
                      +..+.+++.++.|+-+|..++  +.+..+.....      .+.  .+... ++..++.++.++.|.-+|.++++.+-...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATG--KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCC--hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence            345666777899999999887  33333322111      000  11111 22578888889999999999998655543


Q ss_pred             eecCCCceeEEEECC--CCCEEEEEe---------CCCeEEEEEeecCCce
Q 016982           94 ILRLNRAALCVQWSP--KENKFAVGS---------GAKTVCICYYEQENNW  133 (379)
Q Consensus        94 ~~~~~~~v~~~~~~~--~~~~l~~~~---------~d~~v~i~~~~~~~~~  133 (379)
                      .......-..+.-+|  .+..+++++         .++.+.-+|..+++..
T Consensus       138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            322110001111122  124455554         3577888888877743

The alignment model contains an 8-bladed beta-propeller.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=0.00022  Score=62.39  Aligned_cols=178  Identities=17%  Similarity=0.179  Sum_probs=96.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEE-EeecCC
Q 016982           53 HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCIC-YYEQEN  131 (379)
Q Consensus        53 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~-~~~~~~  131 (379)
                      .......+.++|+|++++.++ ||.-.++.....+.  .     ..+......|.+.+ .+|+-.....|.++ +++...
T Consensus        31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~--k-----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN--K-----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE--E-----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred             CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc--c-----ccCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence            444578999999999998854 67788887443331  1     12455778899854 56776668889885 333222


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK  211 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  211 (379)
                          .+.+  .....+..+-.   |.+|...+.+ .|.+||.                  .+++.+..+...  +|..+.
T Consensus       102 ----~k~i--~~~~~~~~If~---G~LL~~~~~~-~i~~yDw------------------~~~~~i~~i~v~--~vk~V~  151 (443)
T PF04053_consen  102 ----VKSI--KLPFSVEKIFG---GNLLGVKSSD-FICFYDW------------------ETGKLIRRIDVS--AVKYVI  151 (443)
T ss_dssp             ----T-------SS-EEEEE----SSSEEEEETT-EEEEE-T------------------TT--EEEEESS---E-EEEE
T ss_pred             ----ceEE--cCCcccceEEc---CcEEEEECCC-CEEEEEh------------------hHcceeeEEecC--CCcEEE
Confidence                1122  11122344322   7777776544 8999996                  778888888643  389999


Q ss_pred             ECCCCCEEEEEcCCCeEEEEECCCC---------C-ceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEE
Q 016982          212 WSPSGNTLAYVGHNSMIYFVDDVGP---------S-PLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMV  272 (379)
Q Consensus       212 ~sp~~~~l~~~~~d~~i~v~d~~~~---------~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i  272 (379)
                      |+++|.+++..+.+ .+.+++....         - .....+..-...|.+.+|..+ -++.+... .+..
T Consensus       152 Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY  219 (443)
T PF04053_consen  152 WSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY  219 (443)
T ss_dssp             E-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE
T ss_pred             EECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE
Confidence            99999999988754 6777764332         0 122333333567889999776 33334443 5554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.40  E-value=0.00049  Score=53.77  Aligned_cols=141  Identities=10%  Similarity=0.066  Sum_probs=90.8

Q ss_pred             CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC
Q 016982           67 NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS  146 (379)
Q Consensus        67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~  146 (379)
                      .+++.|+..+.+.--|..+++.+-....   ..++.+-+.- -|++++.|+..|.+++.+.+++...+..... .  .-.
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~--~vk   96 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-E--TVK   96 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh-h--hhc
Confidence            5677788888888888888864433221   2233222211 3778999999999999999998643322222 1  111


Q ss_pred             EEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCC
Q 016982          147 VTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHN  225 (379)
Q Consensus       147 v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d  225 (379)
                       ......+++..+..|+.|++.+..|.                  ++..++...+...+...+.+..| ++. |..+...
T Consensus        97 -~~a~~d~~~glIycgshd~~~yalD~------------------~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~  156 (354)
T KOG4649|consen   97 -VRAQCDFDGGLIYCGSHDGNFYALDP------------------KTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITA  156 (354)
T ss_pred             -cceEEcCCCceEEEecCCCcEEEecc------------------cccceEEecccCCceeccceecCCCce-EEEEecc
Confidence             22345678999999999999999996                  66777777665555555667777 444 4444455


Q ss_pred             CeEEEEECC
Q 016982          226 SMIYFVDDV  234 (379)
Q Consensus       226 ~~i~v~d~~  234 (379)
                      |.+.--..+
T Consensus       157 G~vlavt~~  165 (354)
T KOG4649|consen  157 GAVLAVTKN  165 (354)
T ss_pred             ceEEEEccC
Confidence            555444433

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.33  E-value=0.0002  Score=63.92  Aligned_cols=198  Identities=9%  Similarity=-0.003  Sum_probs=110.8

Q ss_pred             eCCCCcEEEE-EecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC----CeEEEEeccCCceeeeE
Q 016982           18 WSPDHAMVAF-CPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD----RNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        18 ~s~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~   92 (379)
                      ++|||+.+.. .-..+.+.+.|.++.  +...++.-- +....++++|+|+++++.+.+    .++..-+.........+
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etm--eV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETM--EVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccc--eEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            4456654432 223456667776654  444444332 244678899999998777632    22333333222211111


Q ss_pred             EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC--CceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEE
Q 016982           93 VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE--NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCR  169 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~  169 (379)
                      ..    ..+  -.+.++|++..++  ++.|.+.|..+.  ....+...+  .-......+.++|||+++++++. +.++.
T Consensus       277 ni----~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        277 NI----ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             ch----HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence            11    001  1334578776663  578999888771  011134444  34456688999999988876654 88999


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      |+|+.....-+.. +     .......+.+..... .....+|+++|+...+--.|..|..||+..
T Consensus       347 VIDv~k~k~~~~~-~-----~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDLFDG-K-----IKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhhhhc-c-----CCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            9998321100000 0     000112233333322 345678999998877778899999999865

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=98.29  E-value=0.0014  Score=54.20  Aligned_cols=244  Identities=11%  Similarity=0.140  Sum_probs=117.1

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEEeccC--CCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKH--DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ...++.+|.|..+..-+++|. .+.  |+...++  .++....-...  .-...++.|..+ +.+++ +..+. .+...+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~D   88 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTD   88 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEESS
T ss_pred             CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEecC
Confidence            356899999986666667664 454  4444433  34444321111  124667777643 33444 44553 333334


Q ss_pred             CCc-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           85 GSE-WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        85 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .++ +..........+....+....++..++ .+..|.|+. ..+.+..|...  . ....+.+..+.-+++|++++++.
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~-T~DgG~tW~~~--~-~~~~gs~~~~~r~~dG~~vavs~  163 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYR-TTDGGKTWQAV--V-SETSGSINDITRSSDGRYVAVSS  163 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEE-ESSTTSSEEEE--E--S----EEEEEE-TTS-EEEEET
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEE-eCCCCCCeeEc--c-cCCcceeEeEEECCCCcEEEEEC
Confidence            443 222211111223334444433443333 344565532 23444444322  2 45567889999999999999887


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee---
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA---  240 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~---  240 (379)
                      ......-||.-                .....+..  ......|..|.|+|++.+.+.+ ..|.|++=+........   
T Consensus       164 ~G~~~~s~~~G----------------~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~  224 (302)
T PF14870_consen  164 RGNFYSSWDPG----------------QTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEP  224 (302)
T ss_dssp             TSSEEEEE-TT-----------------SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---
T ss_pred             cccEEEEecCC----------------CccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccc
Confidence            76666778631                01122222  2235679999999998876655 78888887722211110   


Q ss_pred             -eeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEE
Q 016982          241 -QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       241 -~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~  283 (379)
                       .........+..++|.+++.+.+++..+.+ +.+.+..+.|+.
T Consensus       225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~  267 (302)
T PF14870_consen  225 IIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQK  267 (302)
T ss_dssp             B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE
T ss_pred             cCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceE
Confidence             111122344789999999999998877754 567777778885

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=1.3e-06  Score=78.79  Aligned_cols=188  Identities=10%  Similarity=0.045  Sum_probs=127.6

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC--e
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK--T  121 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~  121 (379)
                      ++..+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|......  ..|..+++.+.-+.+|..+++.+.-.  .
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~--ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV--NCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc--cccccccccccccCCcceeeeeccccCch
Confidence            4566778888999999999999999999999999999999999755544  77999999999999998777765432  3


Q ss_pred             EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-
Q 016982          122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-  200 (379)
Q Consensus       122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  200 (379)
                      ..+|++..-..  ...     ....-.++.|+.....-+.|+......+||+                  +++..+.++ 
T Consensus      1169 saLW~~~s~~~--~~H-----sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDv------------------qT~~~l~tyl 1223 (1516)
T KOG1832|consen 1169 SALWDASSTGG--PRH-----SFDEDKAVKFSNSLQFRALGTEADDALLYDV------------------QTCSPLQTYL 1223 (1516)
T ss_pred             HHHhccccccC--ccc-----cccccceeehhhhHHHHHhcccccceEEEec------------------ccCcHHHHhc
Confidence            56888765321  111     1234567888866544455666667899997                  455444442 


Q ss_pred             e---cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE
Q 016982          201 D---LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG  265 (379)
Q Consensus       201 ~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  265 (379)
                      .   +....-+...|+|+..+++   .||  .+||++.... +..+.... .--.-.|+|.|.-++..
T Consensus      1224 t~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a-Ih~FD~ft-~~~~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA-IHRFDQFT-DYGGGGFHPSGNEVIIN 1284 (1516)
T ss_pred             CcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHH-Hhhhhhhe-ecccccccCCCceEEee
Confidence            1   1122336789999988776   455  4799988743 34333222 11234578877655543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=0.0035  Score=54.57  Aligned_cols=220  Identities=12%  Similarity=0.057  Sum_probs=136.2

Q ss_pred             eeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC---CCeEEEEeccCCce
Q 016982           13 ITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH---DRNSYVWNQEGSEW   88 (379)
Q Consensus        13 i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~   88 (379)
                      ...++.++.++.+ +....++.|.+.|..+.  .......--. ....++++|+++.+..+..   ++++.+.|..+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            3467888888744 44445689999997765  3333322211 4578999999988877655   68888888888876


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCcee-EEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWW-VSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-  165 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-  165 (379)
                      ..... . ...+ ..+++.|+|+.+.+.. .++.+.+.|........ ..... ..-...-..+.++|+++++...... 
T Consensus       153 ~~~~~-v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         153 TATIP-V-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSL-VGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             EEEEe-c-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccc-cccCCCCceEEECCCCCEEEEEeccC
Confidence            55532 2 2233 8999999999777666 68889998866654210 00000 1222334678899999866554433 


Q ss_pred             --CeEEEEeccccccccccccCCCccCCcccceEEE-eecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceee
Q 016982          166 --GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ-LDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       166 --~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~  241 (379)
                        +.+...|.                  .++..... ..........+..+|+|+.+.+.. ..+.+.+.|..+... ..
T Consensus       229 ~~~~v~~id~------------------~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v-~~  289 (381)
T COG3391         229 GSNNVLKIDT------------------ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV-VK  289 (381)
T ss_pred             CCceEEEEeC------------------CCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce-ee
Confidence              57888875                  33333332 111111456789999999988774 458899999777552 23


Q ss_pred             eeeee---cCCeeeEEEecC
Q 016982          242 NVAFR---DLPLRDVLFVSE  258 (379)
Q Consensus       242 ~~~~~---~~~i~~~~~s~~  258 (379)
                      .....   ...+..+++.+.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         290 TGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             eecccccccccceeccceee
Confidence            33222   223555666553

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.18  E-value=0.0029  Score=53.43  Aligned_cols=218  Identities=11%  Similarity=0.059  Sum_probs=104.0

Q ss_pred             EeCCCCcEEEEEec-C--CeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982           17 AWSPDHAMVAFCPN-N--NEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        17 ~~s~~~~~l~~~~~-d--g~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      +|.+||+.|+.++. +  ..+++.|+.++   .+.+|.... .......++|+.+.++....+..|+-.|+.+.+....+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~---~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy  118 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATG---EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY  118 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccC---EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence            57789977766554 4  46777777786   333443332 22235667888888877766678999999998754444


Q ss_pred             EeecCCCceeEEEE--CCCCCEEEEEeC----------------------CCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           93 VILRLNRAALCVQW--SPKENKFAVGSG----------------------AKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        93 ~~~~~~~~v~~~~~--~~~~~~l~~~~~----------------------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      ..  ...-+-...|  +.++..++-.-.                      ...|.-.|+.+++    .+.+ ..-...+.
T Consensus       119 ~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~----~~~v-~~~~~wlg  191 (386)
T PF14583_consen  119 EV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE----RKVV-FEDTDWLG  191 (386)
T ss_dssp             E----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------EEEE-EEESS-EE
T ss_pred             EC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc----eeEE-EecCcccc
Confidence            33  2333333445  345555433210                      1223334444444    2333 23455677


Q ss_pred             EEEEcCCC-cEEEEeeC---CC-eEEEEeccccccccccccCCCccCCcccceEEEeecC--CcceEEEEECCCCCEEEE
Q 016982          149 SVAWHPNN-VFLATTST---DG-KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS--FSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       149 ~~~~~p~~-~~l~~~~~---d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~  221 (379)
                      .+.|+|.. ..|+.|-+   +. .-+||-+.                 ..+.....+..+  ...+..=-|.|||..+..
T Consensus       192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~-----------------~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN-----------------TDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             EEEEETTEEEEEEEEE-S-TTTSS-SEEEEE-----------------TTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             CcccCCCCCCEEEEeccCCcceeceEEEEEE-----------------cCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            89999976 44444433   22 23667652                 122222222211  234556678999987765


Q ss_pred             Ec-----CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEE
Q 016982          222 VG-----HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGV  264 (379)
Q Consensus       222 ~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  264 (379)
                      -+     .+..|.-+|+.+....  .+. ...+...+.-++||+++++
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~--~~~-~~p~~~H~~ss~Dg~L~vG  299 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERR--RLM-EMPWCSHFMSSPDGKLFVG  299 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EE--EEE-EE-SEEEEEE-TTSSEEEE
T ss_pred             EeecCCCCceEEEeeCCCCCCce--EEE-eCCceeeeEEcCCCCEEEe
Confidence            32     2446777788876532  222 2224445666789999984

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.12  E-value=0.00079  Score=61.44  Aligned_cols=151  Identities=17%  Similarity=0.170  Sum_probs=88.9

Q ss_pred             cceeEEEeCCCCcEEEEEe------cCC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-------
Q 016982           11 QCITCHAWSPDHAMVAFCP------NNN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-------   75 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~------~dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------   75 (379)
                      ..+...+++|+|+.+|+..      .|.  .|.+++....   ....+.+.  ..+...|+|+|..|.+....       
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---ceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            4678899999999887765      233  4555554322   22223332  37889999998877776532       


Q ss_pred             -----CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC--CceeEEE--EEeecCCcC
Q 016982           76 -----RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE--NNWWVSK--LIRKRHDSS  146 (379)
Q Consensus        76 -----~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~--~~~~~~~~~  146 (379)
                           +.+.+.++..++...     ...+.|..+.|+|||..++... ++.|++--+...  ....+..  .+.......
T Consensus       425 ~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~  498 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT  498 (591)
T ss_pred             ccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence                 223333443332111     2356799999999999988876 477766333221  1111111  121233344


Q ss_pred             EEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982          147 VTSVAWHPNNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       147 v~~~~~~p~~~~l~~~~~d~~i~v~d~  173 (379)
                      +..+.|.+++.++ ++..++...+|.+
T Consensus       499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        499 AVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             cccceEecCCEEE-EEecCCCCceEEE
Confidence            6889999988854 5555555556655

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.11  E-value=0.0043  Score=52.77  Aligned_cols=144  Identities=17%  Similarity=0.224  Sum_probs=97.4

Q ss_pred             CcEEEEEec---------C-CeEEEEEecCC-----ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982           22 HAMVAFCPN---------N-NEVHIYKLIQE-----KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus        22 ~~~l~~~~~---------d-g~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      ..+|++|+.         . |.|.+|++...     +.+.+.... ..++|++++-. ++ +|+.+. ++.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCc
Confidence            578888754         2 89999999984     445554443 46789998866 34 455544 478999999988


Q ss_pred             c-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           87 E-WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        87 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      + ..+... ......+.++...  ++++++|.....+.++.++.... .+...-.......++++.|-++++.++.+..+
T Consensus       118 ~~l~~~~~-~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~-~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~  193 (321)
T PF03178_consen  118 KTLLKKAF-YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN-KLILVARDYQPRWVTAAEFLVDEDTIIVGDKD  193 (321)
T ss_dssp             SSEEEEEE-E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred             ccchhhhe-ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC-EEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence            7 544443 2233456666555  66999999989999987776331 12222223445678899998776789999999


Q ss_pred             CeEEEEec
Q 016982          166 GKCRVFST  173 (379)
Q Consensus       166 ~~i~v~d~  173 (379)
                      |.+.++..
T Consensus       194 gnl~~l~~  201 (321)
T PF03178_consen  194 GNLFVLRY  201 (321)
T ss_dssp             SEEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999976

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.11  E-value=0.00042  Score=64.31  Aligned_cols=133  Identities=13%  Similarity=-0.004  Sum_probs=89.4

Q ss_pred             CCCeEEEEEeecCCceeEEEEEeecCC-cCEEEEEEcCC-------CcEEEEeeCCCeEEEEeccccccccccccCCCcc
Q 016982          118 GAKTVCICYYEQENNWWVSKLIRKRHD-SSVTSVAWHPN-------NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS  189 (379)
Q Consensus       118 ~d~~v~i~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~-------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  189 (379)
                      ....|+-.|++.++   +.... ..+. .+|..  +.|+       ......|-.+..+..||.+..             
T Consensus       502 ~~~~ly~mDLe~GK---VV~eW-~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~-------------  562 (794)
T PF08553_consen  502 NPNKLYKMDLERGK---VVEEW-KVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS-------------  562 (794)
T ss_pred             CCCceEEEecCCCc---EEEEe-ecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCC-------------
Confidence            45678888888887   55655 3333 33444  4443       234456777888999987321             


Q ss_pred             CCcccceEE----EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE
Q 016982          190 DTKFGEQIL----QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG  265 (379)
Q Consensus       190 ~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  265 (379)
                         ..+++.    .+ ......++++-+.+| +||+|+.+|.|++||- .+......+.+-+.||..|..+.||++|++.
T Consensus       563 ---~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT  636 (794)
T PF08553_consen  563 ---GNKLVDSQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILAT  636 (794)
T ss_pred             ---CCceeecccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEe
Confidence               111111    11 123457788877777 5888999999999994 3343334556668999999999999999988


Q ss_pred             eCCCeEEEEe
Q 016982          266 FDCNPMVFAA  275 (379)
Q Consensus       266 ~d~~~~i~~~  275 (379)
                      .+..+.++..
T Consensus       637 c~tyLlLi~t  646 (794)
T PF08553_consen  637 CKTYLLLIDT  646 (794)
T ss_pred             ecceEEEEEE
Confidence            8888888774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=2.6e-05  Score=68.06  Aligned_cols=95  Identities=15%  Similarity=0.288  Sum_probs=78.7

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceE-EEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVS-GIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      ...|.-+.|+|.-.++|++..+|.|.++.+.   ++.+.+++-|...++ +++|.|||+.|+.|-.||+|++.|++++..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            4678889999999999999999999999887   378888887777777 999999999999999999999999999874


Q ss_pred             eeeEEeecCCCceeEEEECC
Q 016982           89 VPTLVILRLNRAALCVQWSP  108 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~  108 (379)
                      +.... .....+|.++-|.+
T Consensus        97 l~~~~-~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFL-FSVETDISKGIWDR  115 (665)
T ss_pred             eeccc-cccccchheeeccc
Confidence            44421 22346777777763

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.06  E-value=0.0037  Score=50.14  Aligned_cols=178  Identities=10%  Similarity=0.129  Sum_probs=114.1

Q ss_pred             eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec
Q 016982           50 LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ  129 (379)
Q Consensus        50 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~  129 (379)
                      +.+-...+.++.|+|+.+.|++..+...-.|+=-..|+.+..+.+.. -.....+.+..++++.++--.++.+.++.++.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            34445569999999999999888887777777777888877776544 34556778887777777767788898888776


Q ss_pred             CCceeEEEE----Ee-ecC-CcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          130 ENNWWVSKL----IR-KRH-DSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       130 ~~~~~~~~~----~~-~~~-~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      .......+.    +. ..+ +.....++|.|.+..|..+=+..-+.||.+...      .................+  .
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~------~~~l~~~~~~~~~~~~~~--f  231 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS------PSSLSVHASLDPTADRDL--F  231 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC------CcccccccccCcccccce--E
Confidence            642111111    10 122 556789999999988888888777888865210      000000000000000000  1


Q ss_pred             CcceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Q 016982          204 FSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       204 ~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      -..+.++.|++ .+.+|+.+.+++.+.-.|....
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence            23477889997 5667777778888888886654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=4e-05  Score=66.92  Aligned_cols=95  Identities=14%  Similarity=0.221  Sum_probs=77.4

Q ss_pred             CcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceE-EEEECCCCCEEEEE
Q 016982          144 DSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF-GVKWSPSGNTLAYV  222 (379)
Q Consensus       144 ~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~  222 (379)
                      ...+..+.|+|.-.++|++..+|.+.++.+                  . .+.+-++..+...++ +++|.|||+.|++|
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~------------------n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg   80 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRL------------------N-WQRLWTIPIPGENVTASLCWRPDGKLLAVG   80 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEe------------------c-cceeEeccCCCCccceeeeecCCCCEEEEE
Confidence            456788999999999999999999999975                  3 677777876777777 99999999999999


Q ss_pred             cCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          223 GHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       223 ~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                      -.||+|++.|..++..+....-....+|..+-|++
T Consensus        81 ~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   81 FKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            99999999999998765443333456778888863

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.02  E-value=0.0066  Score=51.67  Aligned_cols=216  Identities=8%  Similarity=0.066  Sum_probs=120.3

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEE---EEcCC----CCEEEEEeC----------CCeEEEEeccCC----ceeee
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGI---DWSVR----SNRIVTVSH----------DRNSYVWNQEGS----EWVPT   91 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~----~~~l~~~~~----------d~~i~vw~~~~~----~~~~~   91 (379)
                      .|++.|..+.+.-....+... ..+.++   .+..+    ..+|+.|+.          .|.|.++++...    .....
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            577777766532223333332 233433   34332    467777652          288999999884    12222


Q ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982           92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF  171 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~  171 (379)
                      +.....+++|++++-- ++. |+++. .+.|.+|++...+.  +.+.........+.++...  +++++.|.....+.++
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~--l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKT--LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL  154 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSS--EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCccc--chhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence            2234557889988766 344 44444 48899999998872  1222112333466666664  5689999888888888


Q ss_pred             eccccccccccccCCCccCCcccceEEEe--ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC-------C-ceee
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-------S-PLAQ  241 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-------~-~~~~  241 (379)
                      ...                 .....+..+  ......++++.|-++++.++.+..+|.+.++.....       . .+..
T Consensus       155 ~~~-----------------~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~  217 (321)
T PF03178_consen  155 RYD-----------------EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLER  217 (321)
T ss_dssp             EEE-----------------TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEE
T ss_pred             EEE-----------------ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccccee
Confidence            541                 112222222  233556888888877678889999999999976521       1 2222


Q ss_pred             eeeee-cCCeeeE---EEecC--C-------cEEEEEeCCCeEEE
Q 016982          242 NVAFR-DLPLRDV---LFVSE--K-------MVIGVGFDCNPMVF  273 (379)
Q Consensus       242 ~~~~~-~~~i~~~---~~s~~--~-------~~l~~~~d~~~~i~  273 (379)
                      ....| +..|+++   ++.|.  +       .++.++.+|.+...
T Consensus       218 ~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  218 ISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            22233 4556666   44451  1       15557777777643

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.96  E-value=0.0073  Score=50.02  Aligned_cols=232  Identities=13%  Similarity=0.132  Sum_probs=107.2

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecC-CceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQ-EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..+++.|..+ ..+++| ..+. .+...+. ..++.+..-..-......+....++ ....++..|.|..=.=....+..
T Consensus        63 ~l~~I~f~~~-~g~ivG-~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~  138 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVG-EPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQA  138 (302)
T ss_dssp             EEEEEEEETT-EEEEEE-ETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEE
T ss_pred             eEEEEEecCC-ceEEEc-CCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeE
Confidence            3567777643 444544 4453 3333332 2455544222222233344443444 33333445654332222224433


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEE
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV  170 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v  170 (379)
                      ..  ....+.+..+.-+++|++++++..-....-|+  .+..... ..- ......|..+.|.|++.+.+.+ ..|.++.
T Consensus       139 ~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~--~G~~~w~-~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~  211 (302)
T PF14870_consen  139 VV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWD--PGQTTWQ-PHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQF  211 (302)
T ss_dssp             EE---S----EEEEEE-TTS-EEEEETTSSEEEEE---TT-SS-E-EEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred             cc--cCCcceeEeEEECCCCcEEEEECcccEEEEec--CCCccce-EEc-cCccceehhceecCCCCEEEEe-CCcEEEE
Confidence            33  44567888999999999888887544444443  3322111 111 3456889999999998766644 7888877


Q ss_pred             EeccccccccccccCCCccCCcccce----EEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee--
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQ----ILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA--  244 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--  244 (379)
                      =+..                 ...+.    +..+......+..++|.+++...++|+. |.+ +.....++.-.+.-.  
T Consensus       212 s~~~-----------------~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~  272 (302)
T PF14870_consen  212 SDDP-----------------DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGE  272 (302)
T ss_dssp             EE-T-----------------TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGT
T ss_pred             ccCC-----------------CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECcccc
Confidence            6510                 11111    1111112334789999999888877654 433 344445443222211  


Q ss_pred             eecCCeeeEEEecCCcEEEEEeCCCeEEE
Q 016982          245 FRDLPLRDVLFVSEKMVIGVGFDCNPMVF  273 (379)
Q Consensus       245 ~~~~~i~~~~~s~~~~~l~~~~d~~~~i~  273 (379)
                      .-...++.+.|.++.+-++.+.++.+.-|
T Consensus       273 ~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  273 NVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             TSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            12345889999988888888888876543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.94  E-value=0.0046  Score=53.59  Aligned_cols=192  Identities=13%  Similarity=0.103  Sum_probs=100.9

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc------CCCceEEEEEcC-----CC---CEEEEEeC
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK------HDQIVSGIDWSV-----RS---NRIVTVSH   74 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~~~~~   74 (379)
                      ..++|++++.| |=.++|.|..+|.+.|.|++....-....+..      ....|+++.|+.     |+   -.|++|..
T Consensus        85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn  163 (395)
T PF08596_consen   85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN  163 (395)
T ss_dssp             -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred             cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence            36899999997 56799999999999999997763222222333      234678888862     22   36788899


Q ss_pred             CCeEEEEeccC---CceeeeEE-e-ecCCCceeEEE-ECCC-C-------------------CEEEEEeCCCeEEEEEee
Q 016982           75 DRNSYVWNQEG---SEWVPTLV-I-LRLNRAALCVQ-WSPK-E-------------------NKFAVGSGAKTVCICYYE  128 (379)
Q Consensus        75 d~~i~vw~~~~---~~~~~~~~-~-~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~v~i~~~~  128 (379)
                      .|.+.+|.+.-   +.+...+. . ..+.+++..+. ++.+ |                   +-+++...+..++++...
T Consensus       164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~  243 (395)
T PF08596_consen  164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP  243 (395)
T ss_dssp             TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred             CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence            99999998752   22221111 1 13445555554 3221 1                   123444446788887665


Q ss_pred             cCCceeEEEEEeecCCcCEEEEEEc-----CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          129 QENNWWVSKLIRKRHDSSVTSVAWH-----PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      ..+.  ..+.+  ...-.+..+.+-     ..+..|++-..+|.+++|.+                  +.-+.+..+...
T Consensus       244 ~~k~--~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL------------------P~Lkei~~~~l~  301 (395)
T PF08596_consen  244 KSKG--AHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL------------------PSLKEIKSVSLP  301 (395)
T ss_dssp             ---E--EEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET------------------TT--EEEEEE-S
T ss_pred             CCcc--cceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC------------------CCchHhhcccCC
Confidence            5442  22222  121223334442     24677888889999999987                  445555555432


Q ss_pred             C----cceEEEEECCCCCEEEEEc
Q 016982          204 F----SWAFGVKWSPSGNTLAYVG  223 (379)
Q Consensus       204 ~----~~v~~~~~sp~~~~l~~~~  223 (379)
                      .    ..+....++++|..++..+
T Consensus       302 ~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  302 PPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             S---HHHHTT-EE-TTS-EEEE-S
T ss_pred             CccccccccccEECCCCCEEEEeC
Confidence            1    2344566677887766654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.93  E-value=0.0088  Score=49.88  Aligned_cols=195  Identities=10%  Similarity=-0.033  Sum_probs=105.1

Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE
Q 016982           59 GIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK  137 (379)
Q Consensus        59 ~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  137 (379)
                      ...|.++...|+-+. ..+.|.-|+..+++. ..   ......+.++..-..+..|+++..  .+.+++.+.+.......
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~---~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~  102 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-RV---FPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLA  102 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCce-EE---EECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEec
Confidence            446778777554443 567888898886652 22   233445555555444555555542  35556665444210111


Q ss_pred             EEee-cCCcCEEEEEEcCCCcEEEEeeCC---------CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982          138 LIRK-RHDSSVTSVAWHPNNVFLATTSTD---------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA  207 (379)
Q Consensus       138 ~~~~-~~~~~v~~~~~~p~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  207 (379)
                      .... ......+.+...|+|.+.++....         ..-.+|.+                 ...+..+..+..+-..-
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~-----------------~p~g~~~~l~~~~~~~~  165 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRV-----------------DPDGGVVRLLDDDLTIP  165 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEE-----------------cCCCCEEEeecCcEEec
Confidence            1101 122456778888998766653330         01123332                 12344444444444446


Q ss_pred             EEEEECCCCCEEEEEcC-CCeEEEEECCC--C----CceeeeeeeecCCeeeEEEecCCcEEEEEeCC--CeEEEEec
Q 016982          208 FGVKWSPSGNTLAYVGH-NSMIYFVDDVG--P----SPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDC--NPMVFAAD  276 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~~~-d~~i~v~d~~~--~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~--~~~i~~~~  276 (379)
                      +.|+||||++.|..+.. .+.|.-|++..  .    ...........+..-.++...+|.+.+++..+  .+..|+.+
T Consensus       166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            78999999988877754 47888887652  1    11111222223445567777788877543333  67777665

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.89  E-value=0.0025  Score=43.28  Aligned_cols=100  Identities=12%  Similarity=0.081  Sum_probs=67.1

Q ss_pred             eeEEEeCC---CC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           13 ITCHAWSP---DH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        13 i~~~~~s~---~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      |+++++..   || +.|++|+.|..|++|+-.    +.+..+.. ...|+++.-... .+++.+..+|+|-+|+-.... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl-   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL-   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCccee-
Confidence            56666654   43 579999999999999855    35566654 356777776655 578889999999999864433 


Q ss_pred             eeeEEeecCCCceeEEEECC-C--C-CEEEEEeCCCeEE
Q 016982           89 VPTLVILRLNRAALCVQWSP-K--E-NKFAVGSGAKTVC  123 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~d~~v~  123 (379)
                         .... .+..+.++.+.. +  | ..|++|-.+|.|-
T Consensus        75 ---WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 ---WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ---eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence               2222 233456655543 3  2 3678887788764

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.89  E-value=0.01  Score=49.29  Aligned_cols=150  Identities=13%  Similarity=0.046  Sum_probs=88.2

Q ss_pred             CCCCEEEEEeCCCeEEEEeccC-CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEE----
Q 016982           64 VRSNRIVTVSHDRNSYVWNQEG-SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKL----  138 (379)
Q Consensus        64 ~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~----  138 (379)
                      ..++.|+.|+.+| +.+++... .......    ....|..+...|+-+.+++-+ |+.+.++++..-........    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL----KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe----ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            3468899999888 89999832 2222222    234499999999888777766 59999999876543211100    


Q ss_pred             ------EeecCCcCEEEEE--EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc-ceEEEeecCCcceEE
Q 016982          139 ------IRKRHDSSVTSVA--WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG-EQILQLDLSFSWAFG  209 (379)
Q Consensus       139 ------~~~~~~~~v~~~~--~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~  209 (379)
                            ........+...+  -.+.+...+.......|.+|.....              .... ...+++.. ...+..
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~--------------~~~f~~~~ke~~l-p~~~~~  143 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP--------------RNSFSKLLKEISL-PDPPSS  143 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECC--------------cccccceeEEEEc-CCCcEE
Confidence                  0012223344444  1123333444445568998875210              0112 34455544 466888


Q ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          210 VKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       210 ~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      ++|.  ++.++.+.. ....+.|+.++.
T Consensus       144 i~~~--~~~i~v~~~-~~f~~idl~~~~  168 (275)
T PF00780_consen  144 IAFL--GNKICVGTS-KGFYLIDLNTGS  168 (275)
T ss_pred             EEEe--CCEEEEEeC-CceEEEecCCCC
Confidence            9998  556776654 457888988654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.011  Score=49.32  Aligned_cols=224  Identities=11%  Similarity=0.063  Sum_probs=126.0

Q ss_pred             EEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe
Q 016982           16 HAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI   94 (379)
Q Consensus        16 ~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~   94 (379)
                      ..|.++...| .+--..+.|.-|+..+++   ...+.. .+.+.++..-..+..|+++..  -+.+++.+++..+..+..
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~---~~~~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGK---KRVFPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCc---eEEEEC-CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence            3566776644 444457888999887652   233332 233344444444445655543  367777766654222211


Q ss_pred             ec---CCCceeEEEECCCCCEEEEEeC---------CCeEEEEEee-cCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           95 LR---LNRAALCVQWSPKENKFAVGSG---------AKTVCICYYE-QENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        95 ~~---~~~~v~~~~~~~~~~~l~~~~~---------d~~v~i~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ..   .....+.+...|+|.+.+....         ...-.+|-+. .+.   ..+.+ ..+-..-+.++|+||++.|..
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~---~~~l~-~~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG---VVRLL-DDDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC---EEEee-cCcEEecCceEECCCCCEEEE
Confidence            11   1245567888999887666444         0111355555 233   34444 454556678999999977766


Q ss_pred             eeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC-eEEEEECCCCCce
Q 016982          162 TST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS-MIYFVDDVGPSPL  239 (379)
Q Consensus       162 ~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-~i~v~d~~~~~~~  239 (379)
                      ... .+.|.-|++..      ....     .........+....+..-.++...+|.+.+++..+| .|.+|+.. ++ +
T Consensus       180 aDT~~~~i~r~~~d~------~~g~-----~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~-l  246 (307)
T COG3386         180 ADTPANRIHRYDLDP------ATGP-----IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GK-L  246 (307)
T ss_pred             EeCCCCeEEEEecCc------ccCc-----cCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-Cc-E
Confidence            654 47777777621      0000     001122222333456667788888898876554444 89999977 44 4


Q ss_pred             eeeeeeecCCeeeEEEec-CCcEE
Q 016982          240 AQNVAFRDLPLRDVLFVS-EKMVI  262 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~-~~~~l  262 (379)
                      +..+......+++++|-- +.+.|
T Consensus       247 ~~~i~lP~~~~t~~~FgG~~~~~L  270 (307)
T COG3386         247 LGEIKLPVKRPTNPAFGGPDLNTL  270 (307)
T ss_pred             EEEEECCCCCCccceEeCCCcCEE
Confidence            466665556788888864 34433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.86  E-value=0.009  Score=48.01  Aligned_cols=164  Identities=12%  Similarity=0.146  Sum_probs=105.1

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe--ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL--QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      +.+-...|.++.|+|+.+.|++......-.++=...+  ..++++  .+- ...-.+.+..++++.++--.+..+.++.+
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G--dlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG--DLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCC--ceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            4555677999999999988877766555555544444  454444  332 23357888888877777777888888877


Q ss_pred             cCCceee-------eEEeecC-CCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC-------CcCEE
Q 016982           84 EGSEWVP-------TLVILRL-NRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH-------DSSVT  148 (379)
Q Consensus        84 ~~~~~~~-------~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-------~~~v~  148 (379)
                      ..+....       .+....+ +.....++|.|....|+++-+-.-+.||.+...... ........+       -..+.
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~-l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS-LSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc-cccccccCcccccceEeeccc
Confidence            6552111       1111122 567789999999999999998888888877654311 111110111       23467


Q ss_pred             EEEEcCC-CcEEEEeeCCCeEEEEec
Q 016982          149 SVAWHPN-NVFLATTSTDGKCRVFST  173 (379)
Q Consensus       149 ~~~~~p~-~~~l~~~~~d~~i~v~d~  173 (379)
                      ++.|++. +.+|+-+.+++.+.-.|.
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             cceecCCCCcEEEEecCCceEEEEec
Confidence            7888875 456666667777777764

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.86  E-value=0.0023  Score=58.46  Aligned_cols=163  Identities=9%  Similarity=-0.042  Sum_probs=89.3

Q ss_pred             CceeEEEECCCCCEEEEEe------CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe-EEEE
Q 016982           99 RAALCVQWSPKENKFAVGS------GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK-CRVF  171 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-i~v~  171 (379)
                      ..+...+++|+|+.++...      .|..-.||-...+..   .+.+..+  .....-.|+|+|+.+.+...... +++.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~---~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV---AVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc---ceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence            4678899999999888776      244445554443332   1222122  23788999999988877754322 2222


Q ss_pred             eccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEE---EECCCCCcee---eeeee
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF---VDDVGPSPLA---QNVAF  245 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v---~d~~~~~~~~---~~~~~  245 (379)
                      +-..       ...........+....   ...+.|..+.|||||..++... ++.|++   -....+...+   ..+..
T Consensus       425 ~~~~-------~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~  493 (591)
T PRK13616        425 RDPA-------TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP  493 (591)
T ss_pred             ccCC-------CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec
Confidence            2100       0000000001111111   1245699999999999988765 577777   4433332111   11221


Q ss_pred             -ecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          246 -RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       246 -~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                       -...+.++.|..++.+++...+....+|...-
T Consensus       494 ~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~v  526 (591)
T PRK13616        494 GLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNL  526 (591)
T ss_pred             ccCCccccceEecCCEEEEEecCCCCceEEEec
Confidence             22336889999999987655544444555443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.86  E-value=0.0051  Score=57.43  Aligned_cols=135  Identities=13%  Similarity=0.126  Sum_probs=90.3

Q ss_pred             cCCeEEEEEecCCceEEEEEeccCCCc-eEEEEEcCC-------CCEEEEEeCCCeEEEEeccCCc--eeee-EEeecCC
Q 016982           30 NNNEVHIYKLIQEKWEKLHVLQKHDQI-VSGIDWSVR-------SNRIVTVSHDRNSYVWNQEGSE--WVPT-LVILRLN   98 (379)
Q Consensus        30 ~dg~i~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~d~~i~vw~~~~~~--~~~~-~~~~~~~   98 (379)
                      ....|+-.|++.+  +.+..+..|... |..+  .|+       ....+.|-.+..+..||.+-..  ++.. .......
T Consensus       502 ~~~~ly~mDLe~G--KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~  577 (794)
T PF08553_consen  502 NPNKLYKMDLERG--KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK  577 (794)
T ss_pred             CCCceEEEecCCC--cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence            4567888888888  677777766543 4444  443       2345566677889999987543  1110 1111234


Q ss_pred             CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecc
Q 016982           99 RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTF  174 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~  174 (379)
                      ....|++-+.+| +||+|+.+|.|++||-- +..  ....+ .+...+|..|..+.||++++..+ +..+.++++.
T Consensus       578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~--AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~  647 (794)
T PF08553_consen  578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKR--AKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL  647 (794)
T ss_pred             CCceEEEecCCc-eEEEEeCCCcEEeeccc-chh--hhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence            456777766666 69999999999999843 322  22333 67789999999999999988665 5567788864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.85  E-value=0.012  Score=48.92  Aligned_cols=243  Identities=12%  Similarity=0.062  Sum_probs=129.7

Q ss_pred             CCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE------
Q 016982           20 PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV------   93 (379)
Q Consensus        20 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~------   93 (379)
                      ..++.|+.|+.+| +++++.... ........  ...|..+...|+-+.|++-+ |+.+.++++..-.......      
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP-SKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC-ccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            3578899998888 999998322 12222222  23499999999877777665 5999999987654322110      


Q ss_pred             ------eecCCCceeEEE--ECCCCCEEEEEeCCCeEEEEEeecCCc-e-eEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           94 ------ILRLNRAALCVQ--WSPKENKFAVGSGAKTVCICYYEQENN-W-WVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        94 ------~~~~~~~v~~~~--~~~~~~~l~~~~~d~~v~i~~~~~~~~-~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                            .......+...+  -...+...++....+.|.+|.+..... . ...+.+  .....+..++|.  ++.++.|.
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEe--CCEEEEEe
Confidence                  112233444444  112333344444456899998887522 1 133333  445788999997  55677776


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      .++ ..+.|+.......-.  ..    ...............++..+... ++.+|++-  +..-.+.|..........+
T Consensus       156 ~~~-f~~idl~~~~~~~l~--~~----~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i  225 (275)
T PF00780_consen  156 SKG-FYLIDLNTGSPSELL--DP----SDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTI  225 (275)
T ss_pred             CCc-eEEEecCCCCceEEe--Cc----cCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEE
Confidence            554 667776311000000  00    00000000001112233334433 45666543  4444555654432111333


Q ss_pred             eeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEE
Q 016982          244 AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFI  284 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~  284 (379)
                      .. ...+.++++.  ..+|.+-.++.+.+++..+....+..
T Consensus       226 ~W-~~~p~~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i  263 (275)
T PF00780_consen  226 QW-SSAPQSVAYS--SPYLIAFSSNSIEVRSLETGELVQTI  263 (275)
T ss_pred             Ec-CCchhEEEEE--CCEEEEECCCEEEEEECcCCcEEEEE
Confidence            33 3345566663  45777777788999998887654443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=97.84  E-value=7.6e-05  Score=40.31  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=33.9

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      +....+..|...|.++.|+++++.+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45667778889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.84  E-value=0.019  Score=50.95  Aligned_cols=227  Identities=15%  Similarity=0.109  Sum_probs=112.3

Q ss_pred             ceeEEEeCCCCcEEEEEe-cC----CeEEEEEecCCceEEEE-EeccCCCceEEEEEcCCCCEEEEEeCC----------
Q 016982           12 CITCHAWSPDHAMVAFCP-NN----NEVHIYKLIQEKWEKLH-VLQKHDQIVSGIDWSVRSNRIVTVSHD----------   75 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~-~d----g~i~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d----------   75 (379)
                      .+...++||||+++|.+- ..    ..++++|+.+++  .+. .+...  ....+.|.++++.|+....+          
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            344678999999998763 23    359999999883  332 22221  12349999998877665533          


Q ss_pred             -CeEEEEeccCCceeeeEEeecCCCc--eeEEEECCCCCEEEEEeC---C-CeEEEEEeecC--CceeEEEEEeecCCcC
Q 016982           76 -RNSYVWNQEGSEWVPTLVILRLNRA--ALCVQWSPKENKFAVGSG---A-KTVCICYYEQE--NNWWVSKLIRKRHDSS  146 (379)
Q Consensus        76 -~~i~vw~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~---d-~~v~i~~~~~~--~~~~~~~~~~~~~~~~  146 (379)
                       ..|+.|.+.+......+.+......  ...+..++++++++....   + ..+.+.++...  ... ..+.+.....+.
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~-~~~~l~~~~~~~  279 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDA-KPKLLSPREDGV  279 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS--SEEEEEESSSS-
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcC-CcEEEeCCCCce
Confidence             2378888877653322332332322  567889999998876543   2 34666666653  111 123331333333


Q ss_pred             EEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc--ceEEEEECCCCCEEEE
Q 016982          147 VTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--WAFGVKWSPSGNTLAY  221 (379)
Q Consensus       147 v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~  221 (379)
                      ...+... .+.+++....   ++.|.-.++..       .        ........+..+..  .+..+..  .+.+|+.
T Consensus       280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~-------~--------~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl  341 (414)
T PF02897_consen  280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLAD-------P--------SPAEWWTVLIPEDEDVSLEDVSL--FKDYLVL  341 (414)
T ss_dssp             EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTS-------T--------SGGGEEEEEE--SSSEEEEEEEE--ETTEEEE
T ss_pred             EEEEEcc-CCEEEEeeCCCCCCcEEEEecccc-------c--------ccccceeEEcCCCCceeEEEEEE--ECCEEEE
Confidence            3444443 4444444332   34555555410       0        00111223333333  3444444  3555554


Q ss_pred             E-cCC--CeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEE
Q 016982          222 V-GHN--SMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVI  262 (379)
Q Consensus       222 ~-~~d--~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l  262 (379)
                      . ..+  ..|+++++..+... ..+.. ..+.|..+...+++..+
T Consensus       342 ~~~~~~~~~l~v~~~~~~~~~-~~~~~p~~g~v~~~~~~~~~~~~  385 (414)
T PF02897_consen  342 SYRENGSSRLRVYDLDDGKES-REIPLPEAGSVSGVSGDFDSDEL  385 (414)
T ss_dssp             EEEETTEEEEEEEETT-TEEE-EEEESSSSSEEEEEES-TT-SEE
T ss_pred             EEEECCccEEEEEECCCCcEE-eeecCCcceEEeccCCCCCCCEE
Confidence            3 333  36888998822222 22222 23335555555555433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.82  E-value=0.0033  Score=42.72  Aligned_cols=98  Identities=15%  Similarity=0.040  Sum_probs=63.3

Q ss_pred             EEEEEEcC---CC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE
Q 016982          147 VTSVAWHP---NN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV  222 (379)
Q Consensus       147 v~~~~~~p---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  222 (379)
                      |+++++..   +| +.|++|+.|..|++|+                    ..+.+.++.. ...|+.+.-... ..++.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--------------------~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~   59 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--------------------GDEIVAEITE-TDKVTSLCSLGG-GRFAYA   59 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--------------------CCcEEEEEec-ccceEEEEEcCC-CEEEEE
Confidence            45555544   33 7899999999999996                    3466666665 455777776665 568888


Q ss_pred             cCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec-CC----cEEEEEeCCCe
Q 016982          223 GHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS-EK----MVIGVGFDCNP  270 (379)
Q Consensus       223 ~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~~----~~l~~~~d~~~  270 (379)
                      -.+|+|-+|+-...   +...+. ...+.++++.. ++    .++++-++|.+
T Consensus        60 l~NGTVGvY~~~~R---lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   60 LANGTVGVYDRSQR---LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             ecCCEEEEEeCcce---eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            89999999985332   233332 33456665544 33    35555455544

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.80  E-value=0.015  Score=48.44  Aligned_cols=248  Identities=10%  Similarity=0.030  Sum_probs=136.0

Q ss_pred             EEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccC-CC----ceEEEEEcCCCCEEEEEe--CCCe
Q 016982           15 CHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKH-DQ----IVSGIDWSVRSNRIVTVS--HDRN   77 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~-~~----~v~~~~~~~~~~~l~~~~--~d~~   77 (379)
                      .+..+|+++.++++.          +.-.|.+||..+-.....-.++.- ..    ....++++.|+++++...  --..
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            356789999887652          244799999988633332333331 11    223467888888877653  3456


Q ss_pred             EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE-EEeecCCcC-EEEEEEcCC
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK-LIRKRHDSS-VTSVAWHPN  155 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~~~~~-v~~~~~~p~  155 (379)
                      |.|-|+..++.+..+..   .+...-.-+.  ..-+.+-|.||.+.-..++......... .++.....+ +..-++...
T Consensus       120 VtVVDl~~~kvv~ei~~---PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDT---PGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEETTTTEEEEEEEG---TSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             EEEEECCCCceeeeecC---CCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            88999998886665532   2222222122  2457788889999888887443321111 111122222 223445555


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-------cCCcceEEEEECCCCCEEEEEc-----
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------LSFSWAFGVKWSPSGNTLAYVG-----  223 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~-----  223 (379)
                      +..++..+.+|.|+-.|+........             .....+.       -..+.-.-+++++..+.|++.-     
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~-------------~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~  261 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFG-------------KPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE  261 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEE-------------EEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred             CCeEEEEecCCEEEEEeccCCccccc-------------CcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence            56677678999999888743221110             1111000       0012234578887655554431     


Q ss_pred             ---CCC--eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEE-E-EeCCCeEEEEecCCCcEE
Q 016982          224 ---HNS--MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIG-V-GFDCNPMVFAADETGIWT  282 (379)
Q Consensus       224 ---~d~--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~-~-~~d~~~~i~~~~~~~~~~  282 (379)
                         .|+  .|.++|+.+.+.+ ..+.. ..++.++..+.+.+ +|. . ..++.+.+|+...++...
T Consensus       262 gsHKdpgteVWv~D~~t~krv-~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  262 GSHKDPGTEVWVYDLKTHKRV-ARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             T-TTS-EEEEEEEETTTTEEE-EEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             CCccCCceEEEEEECCCCeEE-EEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence               122  4777898887744 55553 34688999999765 554 3 346789999987664333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>smart00320 WD40 WD40 repeats

Probab=97.78  E-value=0.00011  Score=39.63  Aligned_cols=38  Identities=26%  Similarity=0.264  Sum_probs=32.9

Q ss_pred             ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEE
Q 016982          195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD  232 (379)
Q Consensus       195 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d  232 (379)
                      +++..+..|...|.++.|+|++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44556667788899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.76  E-value=0.0017  Score=59.37  Aligned_cols=192  Identities=9%  Similarity=-0.037  Sum_probs=98.9

Q ss_pred             CCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEeccCCcee
Q 016982           21 DHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR-----NSYVWNQEGSEWV   89 (379)
Q Consensus        21 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~~~   89 (379)
                      ++.+.+.|+.+      ..+..||..++.|..+..+...........  -+|+..+.|+.++     .+..||..+.++.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            55666777753      357788988876665554443222222222  2466667777653     4888999888765


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCC-----------------------eEEEEEeecCCceeEEEEEeecCCcC
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAK-----------------------TVCICYYEQENNWWVSKLIRKRHDSS  146 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------~v~i~~~~~~~~~~~~~~~~~~~~~~  146 (379)
                      ..-...........+.+  +++..+.|+.++                       .+..||..+.. |.....+ ......
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m-~~~r~~  456 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNF-WTGTIR  456 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCC-Cccccc
Confidence            43221111111122222  577777777543                       35556655543 3222222 111111


Q ss_pred             EEEEEEcCCCcEEEEeeCCC------eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEE
Q 016982          147 VTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA  220 (379)
Q Consensus       147 v~~~~~~p~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  220 (379)
                      . +++ .-+++..+.|+.++      .+..||....               .....+..+.........+.+  +++..+
T Consensus       457 ~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~---------------~~W~~~~~m~~~r~~~~~~~~--~~~iyv  517 (557)
T PHA02713        457 P-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY---------------NGWELITTTESRLSALHTILH--DNTIMM  517 (557)
T ss_pred             C-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCC---------------CCeeEccccCcccccceeEEE--CCEEEE
Confidence            1 122 22577777777542      3567775210               123333333332222223333  578888


Q ss_pred             EEcCCC--eEEEEECCCCC
Q 016982          221 YVGHNS--MIYFVDDVGPS  237 (379)
Q Consensus       221 ~~~~d~--~i~v~d~~~~~  237 (379)
                      +|+.++  .+..||..+.+
T Consensus       518 ~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        518 LHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             EeeecceeehhhcCccccc
Confidence            888887  67777766654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.013  Score=46.77  Aligned_cols=238  Identities=10%  Similarity=0.036  Sum_probs=119.5

Q ss_pred             EEEeCCCC-cEEEEEecCCe-EEEEEecCCceEEEEEeccCCC--ceEEEEEcCCCCEEEEEeCC-----CeEEEEeccC
Q 016982           15 CHAWSPDH-AMVAFCPNNNE-VHIYKLIQEKWEKLHVLQKHDQ--IVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEG   85 (379)
Q Consensus        15 ~~~~s~~~-~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~   85 (379)
                      .++|+|.. .-++.+-+-|+ ..++|..+..  ...++...++  -.-.=.|||||.+|...-+|     |.|-|||...
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~--~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQ--EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCc--CcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            45666643 34555555554 4567776652  2222221111  11123589999998765433     6799999884


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEE--------EeecCCcee----------EEEE-E-eecCCc
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCIC--------YYEQENNWW----------VSKL-I-RKRHDS  145 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~--------~~~~~~~~~----------~~~~-~-~~~~~~  145 (379)
                      + ..+.-++..|.-....+.|.+||+.++++.  |-|...        |++..++..          +.+. + ...+.-
T Consensus       150 ~-fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l  226 (366)
T COG3490         150 G-FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL  226 (366)
T ss_pred             c-cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence            4 334444456777778999999999998875  323322        122211100          0000 0 012334


Q ss_pred             CEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec-------CCcceEEEEECCCCCE
Q 016982          146 SVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-------SFSWAFGVKWSPSGNT  218 (379)
Q Consensus       146 ~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~  218 (379)
                      .+..++..+||+.++-+-..|.-.         |    .++.......++.+.-+..       ....|-+++.+.+..+
T Consensus       227 SiRHld~g~dgtvwfgcQy~G~~~---------d----~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~gl  293 (366)
T COG3490         227 SIRHLDIGRDGTVWFGCQYRGPRN---------D----LPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGL  293 (366)
T ss_pred             ceeeeeeCCCCcEEEEEEeeCCCc---------c----CCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCe
Confidence            566666666665444332222100         0    0000000122232222221       1234677888876666


Q ss_pred             EEEEc-CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEE
Q 016982          219 LAYVG-HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFA  274 (379)
Q Consensus       219 l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~  274 (379)
                      ++..+ ..+...+||..++... .....  .....++-. .+-+.+++.++.+.+++
T Consensus       294 V~lTSP~GN~~vi~da~tG~vv-~~a~l--~daaGva~~-~~gf~vssg~G~~~~~s  346 (366)
T COG3490         294 VALTSPRGNRAVIWDAATGAVV-SEAAL--PDAAGVAAA-KGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEEecCCCCeEEEEEcCCCcEE-ecccc--cccccceec-cCceEEecCCceEEecc
Confidence            65555 5556778999887632 22111  112222221 34566677777776653

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.74  E-value=0.016  Score=47.22  Aligned_cols=150  Identities=19%  Similarity=0.145  Sum_probs=91.6

Q ss_pred             ceeEEEeCCCCcEEEEEe---cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-ccCCc
Q 016982           12 CITCHAWSPDHAMVAFCP---NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN-QEGSE   87 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~-~~~~~   87 (379)
                      .+...+++++++.+|...   ....++++.....   ....+.+  ..+....|++++...+....+...+++. ...++
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~---~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP---VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc---ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688999999999887665   2335555544332   2222232  3778899999987776666666666663 33333


Q ss_pred             eeeeEEeec-CCCceeEEEECCCCCEEEEEe---CCCeEEEEEeecCCce---eEEEEEe--ecCCcCEEEEEEcCCCcE
Q 016982           88 WVPTLVILR-LNRAALCVQWSPKENKFAVGS---GAKTVCICYYEQENNW---WVSKLIR--KRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        88 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~---~~~~~~~--~~~~~~v~~~~~~p~~~~  158 (379)
                      ......... ....|..+.++|||..++...   .++.|.+--+.....-   .+.....  ......+..++|.+++.+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            222211111 122899999999999888776   2567777655433211   1111111  233468899999999987


Q ss_pred             EEEeeCCC
Q 016982          159 LATTSTDG  166 (379)
Q Consensus       159 l~~~~~d~  166 (379)
                      ++.+...+
T Consensus       180 ~V~~~~~~  187 (253)
T PF10647_consen  180 VVLGRSAG  187 (253)
T ss_pred             EEEeCCCC
Confidence            77666544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.74  E-value=0.002  Score=51.21  Aligned_cols=190  Identities=11%  Similarity=0.127  Sum_probs=111.3

Q ss_pred             EeCCCCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----------------
Q 016982           17 AWSPDHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-----------------   74 (379)
Q Consensus        17 ~~s~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------   74 (379)
                      .|||||.+|...-+     -|.|-|||...+ +..+-.+..|.-.-..+.|.+||+.++.+..                 
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence            58999998876533     378999999854 6788888888877889999999999887642                 


Q ss_pred             -CCeEEEEeccCCceeeeEEee--cCCCceeEEEECCCCCEEEEEeCCCeE-----EEEEeecCCceeEEEEEe------
Q 016982           75 -DRNSYVWNQEGSEWVPTLVIL--RLNRAALCVQWSPKENKFAVGSGAKTV-----CICYYEQENNWWVSKLIR------  140 (379)
Q Consensus        75 -d~~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v-----~i~~~~~~~~~~~~~~~~------  140 (379)
                       .-.+.+.|..+++.+....+.  .+.-.+..++..+||..++-+-..|.-     -+=....++.   .+.+.      
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~---l~~~~~pee~~  275 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP---LEFLDLPEEQT  275 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc---CcccCCCHHHH
Confidence             112444554555544443332  244567888888888876665433221     0100111111   11110      


Q ss_pred             ecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE
Q 016982          141 KRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL  219 (379)
Q Consensus       141 ~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  219 (379)
                      ......|-+++.+.+..+++..+ ..+...+||.                  .++..+..-..  .....++-.  ..-+
T Consensus       276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da------------------~tG~vv~~a~l--~daaGva~~--~~gf  333 (366)
T COG3490         276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA------------------ATGAVVSEAAL--PDAAGVAAA--KGGF  333 (366)
T ss_pred             HHHHhhhhheeecccCCeEEEecCCCCeEEEEEc------------------CCCcEEecccc--cccccceec--cCce
Confidence            11234566777776555555444 4556778996                  56665543221  112233333  2335


Q ss_pred             EEEcCCCeEEEEE
Q 016982          220 AYVGHNSMIYFVD  232 (379)
Q Consensus       220 ~~~~~d~~i~v~d  232 (379)
                      +..+.+|.+.++.
T Consensus       334 ~vssg~G~~~~~s  346 (366)
T COG3490         334 AVSSGQGRIIFYS  346 (366)
T ss_pred             EEecCCceEEecc
Confidence            6667788888874

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.72  E-value=0.0055  Score=56.07  Aligned_cols=191  Identities=14%  Similarity=0.097  Sum_probs=107.0

Q ss_pred             CCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEeccCCce
Q 016982           21 DHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQEGSEW   88 (379)
Q Consensus        21 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~   88 (379)
                      .+.+++.|+.+      ..+..||..++.|.....+..... -.+++.. ++...++|+.|      .++..||..++++
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            45677888776      368899999887877777764333 3444444 35667888888      3578899988887


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCe-----EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKT-----VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ...-.............+  +|...++|+.||.     +-.||..+.+ |...... .......-.+.+  +|+..++|+
T Consensus       362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~-W~~va~m-~~~r~~~gv~~~--~g~iYi~GG  435 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK-WTPVAPM-LTRRSGHGVAVL--GGKLYIIGG  435 (571)
T ss_pred             eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc-ccccCCC-CcceeeeEEEEE--CCEEEEEcC
Confidence            663322221221111112  5888899998865     4456555543 3222222 111222222223  678888888


Q ss_pred             CCC------eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC-----eEEEEE
Q 016982          164 TDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS-----MIYFVD  232 (379)
Q Consensus       164 ~d~------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~v~d  232 (379)
                      .++      .+..||...                .....+..+........ ++ .-++.+.+.|+.|+     +|..||
T Consensus       436 ~~~~~~~l~sve~YDP~t----------------~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~yd  497 (571)
T KOG4441|consen  436 GDGSSNCLNSVECYDPET----------------NTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYD  497 (571)
T ss_pred             cCCCccccceEEEEcCCC----------------CceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEc
Confidence            654      456676421                22233333322222222 22 22577777787665     377788


Q ss_pred             CCCCC
Q 016982          233 DVGPS  237 (379)
Q Consensus       233 ~~~~~  237 (379)
                      ..+.+
T Consensus       498 p~~~~  502 (571)
T KOG4441|consen  498 PETNQ  502 (571)
T ss_pred             CCCCc
Confidence            77654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.035  Score=48.41  Aligned_cols=237  Identities=15%  Similarity=0.138  Sum_probs=141.0

Q ss_pred             ceeEEEeCCCCcEEEEEe-cCCeEEEEEecCCceEEEEE-eccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCce
Q 016982           12 CITCHAWSPDHAMVAFCP-NNNEVHIYKLIQEKWEKLHV-LQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~   88 (379)
                      ....+...+++..+.... ....+...+....   .... ...-...-..++.++.+..+ ++...++.|.+.|......
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n---~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN---TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccc---eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence            455677778885444332 2224555444421   2111 11111233567888888755 4444568899999777765


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeC---CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-C
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSG---AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-T  164 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~  164 (379)
                      ......   ......++++|+++.+.++..   ++.+.+.|-.+..   +.... ..-..+ ..++++|+++.+.... .
T Consensus       109 ~~~~~v---G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---~~~~~-~vG~~P-~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         109 LGSIPV---GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---VTATI-PVGNTP-TGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             eeEeee---ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---EEEEE-ecCCCc-ceEEECCCCCeEEEEecC
Confidence            444432   236788999999988777765   5777777766665   23333 222233 8899999998665554 6


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEE-----EeecCCcceEEEEECCCCCEEEEEcCC---CeEEEEECCCC
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-----QLDLSFSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGP  236 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~  236 (379)
                      ++.+.+.|..                  ......     .... ......+.++|+|.++......   +.+...|..++
T Consensus       181 ~~~v~vi~~~------------------~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~  241 (381)
T COG3391         181 DNTVSVIDTS------------------GNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG  241 (381)
T ss_pred             CCeEEEEeCC------------------Ccceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence            8899999852                  111111     1111 2234678999999976665433   58999998876


Q ss_pred             CceeeeeeeecCCeeeEEEecCCcEEEEEe--CCCeEEEEecCC
Q 016982          237 SPLAQNVAFRDLPLRDVLFVSEKMVIGVGF--DCNPMVFAADET  278 (379)
Q Consensus       237 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--d~~~~i~~~~~~  278 (379)
                      ................+..+|+|..+....  .+.+.+.+....
T Consensus       242 ~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         242 NVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             eEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            533221221111456789999998777443  345555554443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.65  E-value=0.04  Score=49.90  Aligned_cols=53  Identities=8%  Similarity=-0.063  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeee--EEEecCCcEEEEEeCCC
Q 016982          215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRD--VLFVSEKMVIGVGFDCN  269 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~d~~  269 (379)
                      .+..|++++.||.|+.+|..+++.+ ...+. ...+..  +.+..+|++.++..++.
T Consensus       405 ~g~~v~~g~~dG~l~ald~~tG~~l-W~~~~-~~~~~a~P~~~~~~g~~yv~~~~g~  459 (488)
T cd00216         405 AGNLVFAGAADGYFRAFDATTGKEL-WKFRT-PSGIQATPMTYEVNGKQYVGVMVGG  459 (488)
T ss_pred             cCCeEEEECCCCeEEEEECCCCcee-eEEEC-CCCceEcCEEEEeCCEEEEEEEecC
Confidence            4677888899999999999998754 33332 223222  33455676665544443

The alignment model contains an 8-bladed beta-propeller.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.61  E-value=0.026  Score=46.00  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=91.1

Q ss_pred             ceEEEEEcCCCCEEEEEe---CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe-ecCC
Q 016982           56 IVSGIDWSVRSNRIVTVS---HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY-EQEN  131 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~-~~~~  131 (379)
                      .+.+.+++++++.++...   ....+.++......  ....   ....+....|++++...++...+...+++.. ..+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVL---TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeec---cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688999999998877665   33345555544332  2221   2347888899999887777776666666532 2222


Q ss_pred             ceeEEEEEeec-CCcCEEEEEEcCCCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce
Q 016982          132 NWWVSKLIRKR-HDSSVTSVAWHPNNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA  207 (379)
Q Consensus       132 ~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  207 (379)
                      .  ....+... ....|..+.++|||..++...   .++.|.+--+.     ......+    ......+.........+
T Consensus       100 ~--~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~-----r~~~g~~----~~l~~~~~~~~~~~~~v  168 (253)
T PF10647_consen  100 G--EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV-----RDGDGVP----RRLTGPRRVAPPLLSDV  168 (253)
T ss_pred             c--eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE-----eCCCCCc----ceeccceEecccccCcc
Confidence            1  11111111 112899999999998887665   35677766541     1100000    01122222222334578


Q ss_pred             EEEEECCCCCEEEEEcCCC
Q 016982          208 FGVKWSPSGNTLAYVGHNS  226 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~~~d~  226 (379)
                      ..++|.+++.+++.+...+
T Consensus       169 ~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  169 TDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eeeeecCCCEEEEEeCCCC
Confidence            9999999999887766443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.60  E-value=0.043  Score=48.28  Aligned_cols=30  Identities=30%  Similarity=0.480  Sum_probs=27.0

Q ss_pred             CcCEEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982          144 DSSVTSVAWHPNNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       144 ~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~  173 (379)
                      .+++..++.||+++++|.-..+|.+.+...
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            468999999999999999999999988874

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK13684 Ycf48-like protein; Provisional

Probab=97.59  E-value=0.037  Score=47.27  Aligned_cols=241  Identities=11%  Similarity=0.119  Sum_probs=119.9

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEE-eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHV-LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      ...+++|+|....+-+|+|. +|.|  |...++  .|+.... +.....++.++.|.++ ..+++ +..+.|..- -+.+
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG  118 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG  118 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence            56889999986666677764 4543  433332  3444321 1112335778888643 33443 444543332 1222


Q ss_pred             -ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           87 -EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        87 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                       .+...............+.....+..++ ++..|.|.. ..+.++.|....   ......+.++.+.|++.+++++. .
T Consensus       119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~-S~DgG~tW~~~~---~~~~g~~~~i~~~~~g~~v~~g~-~  192 (334)
T PRK13684        119 KNWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYR-TTDGGKNWEALV---EDAAGVVRNLRRSPDGKYVAVSS-R  192 (334)
T ss_pred             CCCeEccCCcCCCCCceEEEEECCCccee-eeccceEEE-ECCCCCCceeCc---CCCcceEEEEEECCCCeEEEEeC-C
Confidence             2222110000111112222222223333 344454422 223344443221   23356788999999887766654 4


Q ss_pred             CeEEE-EeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          166 GKCRV-FSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       166 ~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      |.+.. ++-                   .++..... ......++.+.+.|+++.++++ ..|.+.+=....+..- +..
T Consensus       193 G~i~~s~~~-------------------gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW-~~~  251 (334)
T PRK13684        193 GNFYSTWEP-------------------GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW-SKP  251 (334)
T ss_pred             ceEEEEcCC-------------------CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc-ccc
Confidence            54432 221                   11111111 1224568899999999877765 5576643222332211 111


Q ss_pred             ee----ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEE
Q 016982          244 AF----RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFI  284 (379)
Q Consensus       244 ~~----~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~  284 (379)
                      ..    ....+.++.+.+++.+++++.++.+. ...+....|+..
T Consensus       252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~  295 (334)
T PRK13684        252 IIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKD  295 (334)
T ss_pred             cCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeEC
Confidence            11    12357889999999988888776554 566666677753

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.58  E-value=0.04  Score=47.36  Aligned_cols=203  Identities=8%  Similarity=0.013  Sum_probs=92.8

Q ss_pred             CCcEEEEEe-cCCeEEEEEecCC--ceEEEEEecc---CC----CceEEEEEcCCCCEEEEEe--CC----CeEEEEecc
Q 016982           21 DHAMVAFCP-NNNEVHIYKLIQE--KWEKLHVLQK---HD----QIVSGIDWSVRSNRIVTVS--HD----RNSYVWNQE   84 (379)
Q Consensus        21 ~~~~l~~~~-~dg~i~i~~~~~~--~~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~--~d----~~i~vw~~~   84 (379)
                      +.++|+..+ ..+.|+|+|+.+.  +.+..++++.   +.    ..-..+.--|+|+.++++-  .+    |-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456776665 6789999999853  2344444442   11    1223444557888887753  22    457888887


Q ss_pred             CCceeeeEEeecC-CCceeEEEECCCCCEEEEEe--------------------CCCeEEEEEeecCCceeEEEEEeecC
Q 016982           85 GSEWVPTLVILRL-NRAALCVQWSPKENKFAVGS--------------------GAKTVCICYYEQENNWWVSKLIRKRH  143 (379)
Q Consensus        85 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--------------------~d~~v~i~~~~~~~~~~~~~~~~~~~  143 (379)
                      +.+.......... ..--..+-|.|..+.+++..                    ...++.+||+.+++   ..+.+..+.
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~---~~Q~idLg~  242 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK---LLQTIDLGE  242 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE---EEEEEES-T
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc---EeeEEecCC
Confidence            7765555533221 23456777888888887764                    24679999999988   455553333


Q ss_pred             Cc-CEEEEEEcCC--CcE-EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-----------------c
Q 016982          144 DS-SVTSVAWHPN--NVF-LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-----------------L  202 (379)
Q Consensus       144 ~~-~v~~~~~~p~--~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~  202 (379)
                      .+ ....+.|..+  ..+ ++.+.-.++|..|--.. .-+            -..+.+..+.                 .
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-~g~------------W~a~kVi~ip~~~v~~~~lp~ml~~~~~  309 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-DGE------------WAAEKVIDIPAKKVEGWILPEMLKPFGA  309 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-TTE------------EEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-CCC------------eeeeEEEECCCcccCccccccccccccc
Confidence            32 3456666544  333 33333344454443200 000            0011111111                 1


Q ss_pred             CCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCce
Q 016982          203 SFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPL  239 (379)
Q Consensus       203 ~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~  239 (379)
                      -..-|+.+..|.|.++|..++ .+|.|+.||+..+...
T Consensus       310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            123478999999999988766 7899999999886543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.54  E-value=0.00039  Score=39.29  Aligned_cols=34  Identities=24%  Similarity=0.682  Sum_probs=30.4

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEec
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLI   40 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~   40 (379)
                      +.....|.+++|+|...+||.+..+|.|.+|.+.
T Consensus         8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3346789999999999999999999999999984

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.49  E-value=0.051  Score=46.24  Aligned_cols=233  Identities=15%  Similarity=0.156  Sum_probs=110.2

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEE--cCCCCEEEEEe---C-------------
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW--SVRSNRIVTVS---H-------------   74 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~---~-------------   74 (379)
                      .....++|+.+.++.......|+-.|+.+.+.+.+..++  ...+-...|  +.++.+++-.-   .             
T Consensus        83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e  160 (386)
T PF14583_consen   83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE  160 (386)
T ss_dssp             TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred             ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence            335667788888877666678888899887545555554  444444555  44555554321   1             


Q ss_pred             ------CCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeC---CCe-EEEEEeecCCceeEEEEEe-ec
Q 016982           75 ------DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSG---AKT-VCICYYEQENNWWVSKLIR-KR  142 (379)
Q Consensus        75 ------d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~---d~~-v~i~~~~~~~~~~~~~~~~-~~  142 (379)
                            ...|.--|+.+++....+   .....+..+.|+| |...|+.|-+   +.. -+||-+++...  -.+.+. ..
T Consensus       161 ~~~a~p~~~i~~idl~tG~~~~v~---~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--~~~~v~~~~  235 (386)
T PF14583_consen  161 FYEARPHCRIFTIDLKTGERKVVF---EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--NVKKVHRRM  235 (386)
T ss_dssp             HHHC---EEEEEEETTT--EEEEE---EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS---
T ss_pred             HHhhCCCceEEEEECCCCceeEEE---ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--cceeeecCC
Confidence                  123555677777744443   3456778999999 4556666543   332 36787776542  122221 11


Q ss_pred             CCcCEEEEEEcCCCcEEEEeeC-----CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC
Q 016982          143 HDSSVTSVAWHPNNVFLATTST-----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN  217 (379)
Q Consensus       143 ~~~~v~~~~~~p~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  217 (379)
                      ....+..=-|.|||..+..-+.     +..|.-+|+                  .+++.......  .+...+--++||+
T Consensus       236 ~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~------------------~t~~~~~~~~~--p~~~H~~ss~Dg~  295 (386)
T PF14583_consen  236 EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP------------------DTGERRRLMEM--PWCSHFMSSPDGK  295 (386)
T ss_dssp             TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T------------------TT--EEEEEEE---SEEEEEE-TTSS
T ss_pred             CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC------------------CCCCceEEEeC--CceeeeEEcCCCC
Confidence            2233444568899876654222     233444443                  22322211111  1244666678998


Q ss_pred             EEEEEcCC----------------CeEEEEECCCCCceeeeeeeecC-----------CeeeEEEecCCcEEE--EEeCC
Q 016982          218 TLAYVGHN----------------SMIYFVDDVGPSPLAQNVAFRDL-----------PLRDVLFVSEKMVIG--VGFDC  268 (379)
Q Consensus       218 ~l~~~~~d----------------~~i~v~d~~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~--~~~d~  268 (379)
                      +++-=+.|                --|+++++..+..  ..+..|..           .=..+.|+|||+.|+  +...|
T Consensus       296 L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G  373 (386)
T PF14583_consen  296 LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG  373 (386)
T ss_dssp             EEEEEE-------------------EEEEEETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS
T ss_pred             EEEecCCCCCccccccccceecCCcEEEEeccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC
Confidence            77542222                1466677765432  22222211           124689999999887  44556


Q ss_pred             CeEEEE
Q 016982          269 NPMVFA  274 (379)
Q Consensus       269 ~~~i~~  274 (379)
                      ...||-
T Consensus       374 ~~~vY~  379 (386)
T PF14583_consen  374 PPAVYL  379 (386)
T ss_dssp             S-EEEE
T ss_pred             CccEEE
Confidence            666654

>PHA02713 hypothetical protein; Provisional

Probab=97.46  E-value=0.019  Score=52.77  Aligned_cols=125  Identities=11%  Similarity=0.096  Sum_probs=65.3

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEeccCCceeeeEEeecCCCceeEEEE
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQEGSEWVPTLVILRLNRAALCVQW  106 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~  106 (379)
                      .+..||..+++|..+..++..... .+++. -++...+.|+.+      ..+..||..++.+...-...........+  
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--
Confidence            577899988877766655433221 22222 245566677643      34778898887654322111111111222  


Q ss_pred             CCCCCEEEEEeCCC-----eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982          107 SPKENKFAVGSGAK-----TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus       107 ~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      .-+|+..+.|+.++     .+..||..+.. |.....+ .........+..  +++..+.|+.+
T Consensus       349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~~~~~m-p~~r~~~~~~~~--~g~IYviGG~~  408 (557)
T PHA02713        349 VIDDTIYAIGGQNGTNVERTIECYTMGDDK-WKMLPDM-PIALSSYGMCVL--DQYIYIIGGRT  408 (557)
T ss_pred             EECCEEEEECCcCCCCCCceEEEEECCCCe-EEECCCC-CcccccccEEEE--CCEEEEEeCCC
Confidence            22577778888654     36778776553 3332222 111111122222  67888888765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.38  E-value=0.014  Score=53.41  Aligned_cols=145  Identities=12%  Similarity=0.180  Sum_probs=83.9

Q ss_pred             CCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCe-----EEEEeccCCcee
Q 016982           21 DHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN-----SYVWNQEGSEWV   89 (379)
Q Consensus        21 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~vw~~~~~~~~   89 (379)
                      ++.+.++|+.|      ..+..||..+++|..+..+............  +|...++|+.||.     +..||..+.++.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence            45778888888      3688899998888776666554433322322  4667788888864     888998888765


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCC------eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAK------TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ..-.........-.+.+  +|...++|+.++      ++..||..++. |...... ........ ++.. ++.+.+.|+
T Consensus       410 ~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~~~~~M-~~~R~~~g-~a~~-~~~iYvvGG  483 (571)
T KOG4441|consen  410 PVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNT-WTLIAPM-NTRRSGFG-VAVL-NGKIYVVGG  483 (571)
T ss_pred             ccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCc-eeecCCc-ccccccce-EEEE-CCEEEEECC
Confidence            44322111122222222  577888888654      35566665554 3222222 11111112 2222 678888888


Q ss_pred             CCCe-----EEEEec
Q 016982          164 TDGK-----CRVFST  173 (379)
Q Consensus       164 ~d~~-----i~v~d~  173 (379)
                      .|+.     +..||.
T Consensus       484 ~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  484 FDGTSALSSVERYDP  498 (571)
T ss_pred             ccCCCccceEEEEcC
Confidence            7763     556664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.38  E-value=0.0084  Score=56.51  Aligned_cols=105  Identities=9%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCC-C
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLN-R   99 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~   99 (379)
                      .+..++.|+..|.+...|+.++ ..+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++....+...+++ .
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            3456888888899999888764 2222222334679999999999999999999999999999998877766443322 2


Q ss_pred             ceeEEEECCCCCEEEEEeCCCeEEEEEee
Q 016982          100 AALCVQWSPKENKFAVGSGAKTVCICYYE  128 (379)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~d~~v~i~~~~  128 (379)
                      .+..+.+..++..+.++...|.  +|.+.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            3444455556667777776665  45543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.00027  Score=54.14  Aligned_cols=140  Identities=11%  Similarity=0.026  Sum_probs=74.0

Q ss_pred             EEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEE-
Q 016982           71 TVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTS-  149 (379)
Q Consensus        71 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~-  149 (379)
                      .-+.|+.|.-+++...+....-.. -+...   .....-+..+++|+.+|.|.+|+.+....  ..... ..-...+.+ 
T Consensus        35 ~~sa~~~v~~~~~~k~k~s~rse~-~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~-~s~~e~i~~~  107 (238)
T KOG2444|consen   35 ATSADGLVRERKVRKHKESCRSER-FIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRV-CSGEESIDLG  107 (238)
T ss_pred             cccCCcccccchhhhhhhhhhhhh-hhhcc---eeecccCceEEeecccceEEEecCCccch--HHHhh-hcccccceec
Confidence            345677777776654331111110 01111   11222356799999999999998874321  11111 112222222 


Q ss_pred             EEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-cceEEEEECCCCCEEEEE--cCCC
Q 016982          150 VAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-SWAFGVKWSPSGNTLAYV--GHNS  226 (379)
Q Consensus       150 ~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~--~~d~  226 (379)
                      +.--.++.+..++..+|.|+.|++                  ...+.+-....|. .++..+..+..++.++++  |.|.
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~------------------~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~  169 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNI------------------KPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDR  169 (238)
T ss_pred             cccccccceeEEeccCCceeeecc------------------ccCceeeeeccccCCCcceeEEecCCceEEeeccccch
Confidence            222334567888999999999987                  3444444444444 344444444455555555  5566


Q ss_pred             eEEEEECCC
Q 016982          227 MIYFVDDVG  235 (379)
Q Consensus       227 ~i~v~d~~~  235 (379)
                      .++.|++..
T Consensus       170 ~~k~W~ve~  178 (238)
T KOG2444|consen  170 VLKKWNVEK  178 (238)
T ss_pred             hhhhcchhh
Confidence            666666543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.0084  Score=52.02  Aligned_cols=140  Identities=10%  Similarity=-0.010  Sum_probs=90.3

Q ss_pred             EEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-------EEEEeeCCCeEEEEeccccccccccccCC
Q 016982          114 AVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-------FLATTSTDGKCRVFSTFIKGVDIKEKKEG  186 (379)
Q Consensus       114 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  186 (379)
                      ..+.....++-.|++.++   +.... .-+.. |.-+.+.|+.+       .-+.|-.+..|.-||.+.+..        
T Consensus       350 ~~~~~~~~l~klDIE~GK---IVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--------  416 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGK---IVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--------  416 (644)
T ss_pred             eCCCCcCcceeeecccce---eeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--------
Confidence            344445567777888777   44444 33333 77777887652       223466788888898742111        


Q ss_pred             CccCCcccceEEEeecC----CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE
Q 016982          187 TSSDTKFGEQILQLDLS----FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI  262 (379)
Q Consensus       187 ~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  262 (379)
                              ..+..-+.|    .....|.+-..+| ++++||.+|.|++||- .+..-..-+++-+.+|..+..+.+|++|
T Consensus       417 --------~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  417 --------NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             --------ceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEE
Confidence                    112212222    2234555555555 6888999999999995 4444445567778999999999999999


Q ss_pred             EEEeCCCeEEEEec
Q 016982          263 GVGFDCNPMVFAAD  276 (379)
Q Consensus       263 ~~~~d~~~~i~~~~  276 (379)
                      .+..+..+.+....
T Consensus       487 l~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  487 LATCKTYLLLIDTL  500 (644)
T ss_pred             EEecccEEEEEEEe
Confidence            98888877776643

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.32  E-value=0.014  Score=51.55  Aligned_cols=154  Identities=15%  Similarity=0.256  Sum_probs=90.7

Q ss_pred             eeccCcceeEEEeCCCCcEEEEE-e--cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC----CEEEEEeCCCeE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFC-P--NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS----NRIVTVSHDRNS   78 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~-~--~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i   78 (379)
                      +++--.+|..++|. ||+.++-. -  .+|.+++=|     -..+..|    ..|..+.|.|-+    ..|+.....+.|
T Consensus        15 L~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-----s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhV   84 (671)
T PF15390_consen   15 LHQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-----SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHV   84 (671)
T ss_pred             HHhhhccccceEec-CCCEEEEEeeeeeCCccccCC-----ccEeecc----ceeeeeeecCcccCCCCceEEEeccceE
Confidence            44455789999997 66655432 1  233333211     1233333    358899999864    245555667889


Q ss_pred             EEEeccC-----CceeeeE--Eee-cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE
Q 016982           79 YVWNQEG-----SEWVPTL--VIL-RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV  150 (379)
Q Consensus        79 ~vw~~~~-----~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~  150 (379)
                      .+|.+.-     .++....  ++. ...--...+.|+|....|++-.....-.++++......  .+.- ....+.|.|.
T Consensus        85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr--VkaD-i~~~G~IhCA  161 (671)
T PF15390_consen   85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR--VKAD-IKTSGLIHCA  161 (671)
T ss_pred             EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce--EEEe-ccCCceEEEE
Confidence            9999862     2221111  100 01112356789999988888776555456677665531  1111 3567889999


Q ss_pred             EEcCCCcEEEEee-CCCeEEEEe
Q 016982          151 AWHPNNVFLATTS-TDGKCRVFS  172 (379)
Q Consensus       151 ~~~p~~~~l~~~~-~d~~i~v~d  172 (379)
                      +|.+||++|+++- ..=.-++||
T Consensus       162 CWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  162 CWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             EecCcCCEEEEEeCCeEEEEEec
Confidence            9999998776543 333456777

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.02  Score=54.09  Aligned_cols=101  Identities=20%  Similarity=0.243  Sum_probs=72.3

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc
Q 016982           66 SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS  145 (379)
Q Consensus        66 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~  145 (379)
                      +-.++.|+..|.+...|+.+. ..+...-....++|++++|+.+|..++.|-.+|.|.+||+..++   ..+.+ ..|..
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k---~l~~i-~e~~a  173 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK---ILKVI-TEHGA  173 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc---ceeee-eecCC
Confidence            457888888899998887764 12222223456899999999999999999999999999999877   35555 44444


Q ss_pred             CEEE---EEEcCCCcEEEEeeCCCeEEEEec
Q 016982          146 SVTS---VAWHPNNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       146 ~v~~---~~~~p~~~~l~~~~~d~~i~v~d~  173 (379)
                      +...   +.+..++..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            4333   344445566777777776  6765

>PHA03098 kelch-like protein; Provisional

Probab=97.26  E-value=0.028  Score=51.65  Aligned_cols=145  Identities=13%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             CCcEEEEEecCC------eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCcee
Q 016982           21 DHAMVAFCPNNN------EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSEWV   89 (379)
Q Consensus        21 ~~~~l~~~~~dg------~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~   89 (379)
                      ++..++.|+.++      .+..||..+++|.....+.........+.+  +++..+.|+.+     ..+..||..++++.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455667776532      577889888877655444322222222222  46666777754     34778898887765


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCC------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGA------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ..-.. .....-.+++ .-+++.++.|+.+      ..+..||..+.. |.....+.... ... ++. ..+++.++.|+
T Consensus       372 ~~~~l-p~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r-~~~-~~~-~~~~~iyv~GG  445 (534)
T PHA03098        372 EEPPL-IFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISH-YGG-CAI-YHDGKIYVIGG  445 (534)
T ss_pred             eCCCc-CcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccc-cCc-eEE-EECCEEEEECC
Confidence            43211 1111111222 2256677777632      346777776543 32222221111 111 222 23567777776


Q ss_pred             CCC--------eEEEEec
Q 016982          164 TDG--------KCRVFST  173 (379)
Q Consensus       164 ~d~--------~i~v~d~  173 (379)
                      .+.        .+.+||.
T Consensus       446 ~~~~~~~~~~~~v~~yd~  463 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNP  463 (534)
T ss_pred             ccCCCCCcccceEEEecC
Confidence            432        3677775

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.011  Score=51.42  Aligned_cols=142  Identities=15%  Similarity=0.135  Sum_probs=92.0

Q ss_pred             CCEE-EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC-------EEEEEeCCCeEEEEEeecCCce----
Q 016982           66 SNRI-VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN-------KFAVGSGAKTVCICYYEQENNW----  133 (379)
Q Consensus        66 ~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~i~~~~~~~~~----  133 (379)
                      .++| .++.....++-.|++.|+.+....+   ...|.-+.+.|+.+       .-++|-.|..|.-||.+-....    
T Consensus       345 snlil~~~~~~~~l~klDIE~GKIVeEWk~---~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  345 SNLILMDGGEQDKLYKLDIERGKIVEEWKF---EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cceEeeCCCCcCcceeeecccceeeeEeec---cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            3444 3444456688889999987776654   33477777887643       2345666888888998755421    


Q ss_pred             eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE-EEeecCCcceEEEEE
Q 016982          134 WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAFGVKW  212 (379)
Q Consensus       134 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~  212 (379)
                      ...+.  ........|.+-..+| ++++|+.+|.|++||-                   .+... ..+++-..+|..+..
T Consensus       422 ~q~kq--y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-------------------i~~~AKTAlPgLG~~I~hVdv  479 (644)
T KOG2395|consen  422 VQSKQ--YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-------------------IGRRAKTALPGLGDAIKHVDV  479 (644)
T ss_pred             eeccc--cccccccceeeecCCc-eEEEeecCCcEEeehh-------------------hhhhhhhcccccCCceeeEEe
Confidence            11111  1223345566655444 7999999999999982                   23222 235566788999999


Q ss_pred             CCCCCEEEEEcCCCeEEEEEC
Q 016982          213 SPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       213 sp~~~~l~~~~~d~~i~v~d~  233 (379)
                      +.+|++++..+ +..+.+.++
T Consensus       480 tadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  480 TADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eccCcEEEEec-ccEEEEEEE
Confidence            99999987654 556666654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.19  E-value=0.13  Score=44.43  Aligned_cols=156  Identities=15%  Similarity=0.191  Sum_probs=79.1

Q ss_pred             EeCCCCcEEEEEe--c----CCeEEEEEecCCceEEEEEeccC---CCceEEEEEcCCCCEEEEEeC-------------
Q 016982           17 AWSPDHAMVAFCP--N----NNEVHIYKLIQEKWEKLHVLQKH---DQIVSGIDWSVRSNRIVTVSH-------------   74 (379)
Q Consensus        17 ~~s~~~~~l~~~~--~----dg~i~i~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-------------   74 (379)
                      -.-|+|+.++++-  .    -|.+.++|-++  ++........   ...-..+-|.|..+.++|...             
T Consensus       136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t--f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  136 HCLPDGRIMISALGDADGNGPGGFVLLDGET--FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             EE-SS--EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred             eecCCccEEEEeccCCCCCCCCcEEEEcCcc--ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence            3446888887752  2    34566776654  3444444332   223456778888888888642             


Q ss_pred             -------CCeEEEEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecC-
Q 016982           75 -------DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRH-  143 (379)
Q Consensus        75 -------d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~-  143 (379)
                             ..++.+||+.+.+.++.+.+-.....+..+.|..  +..+=++++ -..+|..|--.....|...+.+.... 
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence                   3579999999999888887644444566777754  444434433 34455555443444455444442111 


Q ss_pred             -----------------CcCEEEEEEcCCCcEEEEee-CCCeEEEEecc
Q 016982          144 -----------------DSSVTSVAWHPNNVFLATTS-TDGKCRVFSTF  174 (379)
Q Consensus       144 -----------------~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~  174 (379)
                                       ..-+++|..|.|+++|...+ ..|.++.||+.
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence                             24578999999999887766 58999999984

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.13  E-value=0.062  Score=46.69  Aligned_cols=146  Identities=9%  Similarity=0.081  Sum_probs=79.9

Q ss_pred             cceeEEEeCCCCcEEEEEe-----------cCC-eEEEEEecCC--ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 016982           11 QCITCHAWSPDHAMVAFCP-----------NNN-EVHIYKLIQE--KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR   76 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~-----------~dg-~i~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   76 (379)
                      .....|+|.++|+++++-.           ..+ .|.+++-.++  .......+.........+++.+++ .++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4567899999999877642           223 7777765432  223334444334456889999988 444 44443


Q ss_pred             eEEEEeccCC-----ceeeeEEeec-----CCCceeEEEECCCCCEEEEEeCC-------------------CeEEEEEe
Q 016982           77 NSYVWNQEGS-----EWVPTLVILR-----LNRAALCVQWSPKENKFAVGSGA-------------------KTVCICYY  127 (379)
Q Consensus        77 ~i~vw~~~~~-----~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-------------------~~v~i~~~  127 (379)
                      ..++.+....     +....+....     +......+.|.|||.+.++.+..                   +.+.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334354321     2111111111     12347789999999876654421                   22333333


Q ss_pred             ecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982          128 EQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      +...    .+.+..++ .....++|+|+|+++++-.
T Consensus       172 dg~~----~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGK----LRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCe----EEEEecCc-CCCccceECCCCCEEEEcc
Confidence            3322    23332333 3346889999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.04  E-value=0.029  Score=51.21  Aligned_cols=113  Identities=12%  Similarity=0.133  Sum_probs=75.8

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEc--CCCCEEEEEeCCCeEEEEecc-----
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS--VRSNRIVTVSHDRNSYVWNQE-----   84 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~vw~~~-----   84 (379)
                      .++-+.-|.-++..++-+....+.|||...+..+....+ ...+.|.++.|.  |+++.+++.+..+.|.++--.     
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344444455455444444556899999998865665666 346789999995  678899888999999998532     


Q ss_pred             --CC--ceeeeEEeecCC-CceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           85 --GS--EWVPTLVILRLN-RAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        85 --~~--~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                        ..  ..+..+.+..++ .+|.+..|.++|..++.++  +.+.|++-
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence              11  233444444444 6899999999987655544  56777653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.01  E-value=0.088  Score=48.17  Aligned_cols=121  Identities=9%  Similarity=0.088  Sum_probs=76.5

Q ss_pred             CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc--CCCcEEEEeeCCCeEEEEecccc
Q 016982           99 RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH--PNNVFLATTSTDGKCRVFSTFIK  176 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~~d~~i~v~d~~~~  176 (379)
                      ..+.-+.-+.-++..++-+....+.|||.+... .+....  ....+.|.++.|.  |+++.+++.+....|.+|.-   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~--f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q---  103 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEES--FSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ---  103 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeee--ecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc---
Confidence            445555555555555555555679999998775 111222  2457889999996  57888999999999999963   


Q ss_pred             ccccccccCCCccCCcccceEEEe--ecCC-cceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          177 GVDIKEKKEGTSSDTKFGEQILQL--DLSF-SWAFGVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                         .|..-...   .+...++..+  ..+. .+|.+..|.++|.+++.+  ++.+.|+|-
T Consensus       104 ---~R~dy~~~---~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  104 ---LRYDYTNK---GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             ---cchhhhcC---CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence               22211110   1223344433  2222 578999999999877644  467888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=96.98  E-value=0.1  Score=47.17  Aligned_cols=142  Identities=10%  Similarity=0.149  Sum_probs=72.9

Q ss_pred             CCcEEEEEecC-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC--CeEEEEeccCCceeeeEE
Q 016982           21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD--RNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~   93 (379)
                      ++.++++|+.+     ..+..||..+++|..+..+.........+.  -++...+.|+.+  ..+..||..++++...-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            44566777654     257788988877766665543322222222  356566667653  357888887776544322


Q ss_pred             eecCCCceeEEEECCCCCEEEEEeCCC---eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEE
Q 016982           94 ILRLNRAALCVQWSPKENKFAVGSGAK---TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV  170 (379)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v  170 (379)
                      ..........+  .-+|+..+.|+.++   .+..||.++.. |.....+ .........+.  -+++..+.|+   .+.+
T Consensus       349 l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m-~~~r~~~~~~~--~~~~IYv~GG---~~e~  419 (480)
T PHA02790        349 LLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPST-YYPHYKSCALV--FGRRLFLVGR---NAEF  419 (480)
T ss_pred             CCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCC-CCccccceEEE--ECCEEEEECC---ceEE
Confidence            11111111122  22577777777543   35667765443 3322222 11111112222  3567677664   4667


Q ss_pred             Eec
Q 016982          171 FST  173 (379)
Q Consensus       171 ~d~  173 (379)
                      ||.
T Consensus       420 ydp  422 (480)
T PHA02790        420 YCE  422 (480)
T ss_pred             ecC
Confidence            775

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.93  E-value=0.098  Score=45.47  Aligned_cols=106  Identities=9%  Similarity=0.061  Sum_probs=55.3

Q ss_pred             ceEEEEEcCCCCEEEEEe-----------CCC-eEEEEeccC--CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe
Q 016982           56 IVSGIDWSVRSNRIVTVS-----------HDR-NSYVWNQEG--SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT  121 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~-----------~d~-~i~vw~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  121 (379)
                      ....|+|.++|+.+++-.           ..+ .|.+++-.+  +.......+...-.....+++.+++  |+++.....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence            446889999998776642           123 676665432  2221111222223456889999888  444444433


Q ss_pred             EEEEEeecC-----CceeEEEEEeec---CCcCEEEEEEcCCCcEEEEee
Q 016982          122 VCICYYEQE-----NNWWVSKLIRKR---HDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus       122 v~i~~~~~~-----~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .++.+.+..     +...+...+...   +......++|.|||++.++-+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            333343321     111111112111   134477899999998776555

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.91  E-value=0.22  Score=42.54  Aligned_cols=254  Identities=12%  Similarity=0.054  Sum_probs=119.5

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCce-EEEEEe----ccCCCceEEEEEcCC---CCEEEEEeC-C-------
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW-EKLHVL----QKHDQIVSGIDWSVR---SNRIVTVSH-D-------   75 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~-d-------   75 (379)
                      ..++|+|.|||++|++ ...|.|++++ ..+.. ..+..+    .........++++|+   ..+|..... .       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999987775 4689999999 33322 233333    223456789999995   234433322 1       


Q ss_pred             -CeEEEEeccCC--c---eeeeEEeec----CCCceeEEEECCCCCEEEEEeCCCe-----------EEEEEeecCCce-
Q 016982           76 -RNSYVWNQEGS--E---WVPTLVILR----LNRAALCVQWSPKENKFAVGSGAKT-----------VCICYYEQENNW-  133 (379)
Q Consensus        76 -~~i~vw~~~~~--~---~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~~-  133 (379)
                       ..|.-|....+  .   ....+....    .......|.|.|||.+.++.+..+.           =+|+.++..... 
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             23544555443  1   111111111    2234567999999976666553221           122223221100 


Q ss_pred             ----------eEEEEEeecCCcCEEEEEEcCC-CcEEEEe-eCCCeEEEEecccccccc----ccccCC--------Ccc
Q 016982          134 ----------WVSKLIRKRHDSSVTSVAWHPN-NVFLATT-STDGKCRVFSTFIKGVDI----KEKKEG--------TSS  189 (379)
Q Consensus       134 ----------~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~-~~d~~i~v~d~~~~~~~~----~~~~~~--------~~~  189 (379)
                                ...+.+..++.. ...++|+|. ++++++- +.++.-.|--+. +....    ......        ...
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEec-cCCcCCCCCCcCCCCCCCCccccccC
Confidence                      001122134443 357899998 6655542 223222222221 11110    000000        000


Q ss_pred             CCcccceEEEeecCCcceEEEEECC-------CCCEEEEEcCCCeEEEEECCCCCceeee---eeeecCCeeeEEEecCC
Q 016982          190 DTKFGEQILQLDLSFSWAFGVKWSP-------SGNTLAYVGHNSMIYFVDDVGPSPLAQN---VAFRDLPLRDVLFVSEK  259 (379)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~~~~sp-------~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~i~~~~~s~~~  259 (379)
                      ......++..+..| ..+..+.|.+       .|.+++..-..+.|...++.........   +......+..+++.|||
T Consensus       239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG  317 (331)
T PF07995_consen  239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG  317 (331)
T ss_dssp             -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred             CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence            01122344455544 4567777764       3556666666778888887644322111   22233468999999999


Q ss_pred             cEEEEEe-CCCe
Q 016982          260 MVIGVGF-DCNP  270 (379)
Q Consensus       260 ~~l~~~~-d~~~  270 (379)
                      .++++.. ++.|
T Consensus       318 ~Lyv~~d~~G~i  329 (331)
T PF07995_consen  318 ALYVSDDSDGKI  329 (331)
T ss_dssp             EEEEEE-TTTTE
T ss_pred             eEEEEECCCCeE
Confidence            9877544 5554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.89  E-value=0.085  Score=46.90  Aligned_cols=151  Identities=10%  Similarity=0.128  Sum_probs=85.3

Q ss_pred             CceeEEEECCCCCEEEEEe---CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC----cEEEEeeCCCeEEEE
Q 016982           99 RAALCVQWSPKENKFAVGS---GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN----VFLATTSTDGKCRVF  171 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~d~~i~v~  171 (379)
                      .++..++|. ||+.++-..   .+|.+++     +.    ...  .+....|..+.|.|-+    ..|++.-....|.||
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf-----Gd----s~v--iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF-----GD----SKV--IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCcccc-----CC----ccE--eeccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence            467888887 566544332   1233222     11    122  2455678999999953    345556678899999


Q ss_pred             eccccccccccccCCCccCCcccceEEEeecC-----CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-----FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR  246 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  246 (379)
                      -+.-       ..      ....+.+.....+     .--.....|+|....|++-.....-.+++++.....++.--..
T Consensus        88 qL~~-------s~------~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~  154 (671)
T PF15390_consen   88 QLCP-------ST------TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT  154 (671)
T ss_pred             Eecc-------Cc------cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC
Confidence            8621       00      0112222221111     1113567899998888776555444566665544333322234


Q ss_pred             cCCeeeEEEecCCcEEEEEeCC--CeEEEE
Q 016982          247 DLPLRDVLFVSEKMVIGVGFDC--NPMVFA  274 (379)
Q Consensus       247 ~~~i~~~~~s~~~~~l~~~~d~--~~~i~~  274 (379)
                      .+.|.+.+|.+||+.|+.+-..  ..++|+
T Consensus       155 ~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  155 SGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             CceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            6779999999999877744433  445665

>PRK13684 Ycf48-like protein; Provisional

Probab=96.86  E-value=0.25  Score=42.30  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=86.4

Q ss_pred             CCceeEEEECCCCCEEEEEeCCCeEEEEEeecC-CceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982           98 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQE-NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK  176 (379)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~  176 (379)
                      ...+..+.+.|++.+++++. .|.+.. ..+.+ ..|...  . ..-...++++.+.|+++.++++ ..|.+++=..   
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~--~-~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~---  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPH--Q-RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDP---  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEe--e-CCCcccceeeeEcCCCCEEEEe-cCCEEEEccC---
Confidence            56788999999887665554 565532 11222 223221  1 3445678999999998877665 4566543211   


Q ss_pred             ccccccccCCCccCCcccceEEEeec----CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee---eecCC
Q 016982          177 GVDIKEKKEGTSSDTKFGEQILQLDL----SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA---FRDLP  249 (379)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~  249 (379)
                                     ..+........    ....+..+.+.|++..+++ +.+|.+.. ....++.- +...   .-...
T Consensus       243 ---------------d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW-~~~~~~~~~~~~  304 (334)
T PRK13684        243 ---------------DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTW-EKDPVGEEVPSN  304 (334)
T ss_pred             ---------------CCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCC-eECCcCCCCCcc
Confidence                           11111111111    1234778899998876655 45675543 33333321 2221   11235


Q ss_pred             eeeEEEecCCcEEEEEeCCCeEEEE
Q 016982          250 LRDVLFVSEKMVIGVGFDCNPMVFA  274 (379)
Q Consensus       250 i~~~~~s~~~~~l~~~~d~~~~i~~  274 (379)
                      .+.+.|..+++.+++|..|.|..+.
T Consensus       305 ~~~~~~~~~~~~~~~G~~G~il~~~  329 (334)
T PRK13684        305 FYKIVFLDPEKGFVLGQRGVLLRYV  329 (334)
T ss_pred             eEEEEEeCCCceEEECCCceEEEec
Confidence            7888888888899999888877654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.83  E-value=0.0068  Score=34.28  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ...|.+++|+|...+||.++.+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4579999999999999999999999999983

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.77  E-value=0.33  Score=42.39  Aligned_cols=78  Identities=14%  Similarity=0.130  Sum_probs=49.2

Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc----eeeeeee--ecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP----LAQNVAF--RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~--~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                      ...+..+.+.+++..++++ ..|.+..=+ ..+..    .......  ....+.++.|.+++..+++|..|.+.. ..+.
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~-s~D~  356 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLR-STDG  356 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEE-eCCC
Confidence            4468899999999988766 556554332 23221    1122211  123588999999999999988875544 4466


Q ss_pred             CCcEEEE
Q 016982          278 TGIWTFI  284 (379)
Q Consensus       278 ~~~~~~~  284 (379)
                      ...|+..
T Consensus       357 G~tW~~~  363 (398)
T PLN00033        357 GKSWKRD  363 (398)
T ss_pred             CcceeEc
Confidence            6678763

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.27  Score=45.17  Aligned_cols=199  Identities=12%  Similarity=0.087  Sum_probs=96.0

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee-EEeecCCCceeEEEECCCCC
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT-LVILRLNRAALCVQWSPKEN  111 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~  111 (379)
                      .|+||+..+.   .+..+.-....+-.+.|+.+.. |+....+|++.+|++........ .........|..+.+..+|-
T Consensus        65 ~I~If~~sG~---lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNISGQ---LLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecccc---chHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence            4788887763   4443333334788999997764 55568899999999876532221 11111223455555554554


Q ss_pred             EEEEEeCCCeEEEE-EeecCCceeEEEEEee--cCCcCEEEEEEcCCC---cEEEEeeCCCeEEEEeccccccccccccC
Q 016982          112 KFAVGSGAKTVCIC-YYEQENNWWVSKLIRK--RHDSSVTSVAWHPNN---VFLATTSTDGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       112 ~l~~~~~d~~v~i~-~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  185 (379)
                      .+++  .+|.+.+. +.....    ......  ....+..|-...+++   ..++-....-...++-.            
T Consensus       141 avlt--~~g~v~~i~~~~~~~----~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~------------  202 (829)
T KOG2280|consen  141 AVLT--VSGQVILINGVEEPK----LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQV------------  202 (829)
T ss_pred             EEEe--cCCcEEEEcCCCcch----hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccce------------
Confidence            3333  34555542 222211    111101  111111222222221   11111110000011111            


Q ss_pred             CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCC
Q 016982          186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEK  259 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~  259 (379)
                           .........+......+..+..||+.++|+.-...|.|.+.+....+.. ..+. ....+...++|..+.
T Consensus       203 -----~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l-ce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  203 -----EESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL-CEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             -----ecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh-hccCCCCCCchHhceeecCC
Confidence                 0111112222222456788999999999999889999998876654422 3332 112333467776544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.70  E-value=0.0083  Score=46.27  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC-
Q 016982           66 SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD-  144 (379)
Q Consensus        66 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~-  144 (379)
                      +..++.|+.+|.|.+|+.................-...+.--.++.+..+++.|+.|+.|+....+.   .... ..|. 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~---~g~~-g~h~~  145 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV---LGYV-GQHNF  145 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce---eeee-ccccC
Confidence            4678899999999999887322111111111111122222233566888999999999999887762   3333 4455 


Q ss_pred             cCEEEEEEcCCCcEEEEe--eCCCeEEEEec
Q 016982          145 SSVTSVAWHPNNVFLATT--STDGKCRVFST  173 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~--~~d~~i~v~d~  173 (379)
                      .++........++.++..  +.|..++.|++
T Consensus       146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             CCcceeEEecCCceEEeeccccchhhhhcch
Confidence            444444444445555555  55666666665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.63  E-value=0.54  Score=43.06  Aligned_cols=209  Identities=10%  Similarity=0.074  Sum_probs=104.0

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceE----------EEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVS----------GIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      +..+++++.++.|+-+|..++  +.+-.+.... ..+.          .+++.  +..++.++.|+.|.-.|..+++.+-
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TG--k~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTG--KELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCC--ceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEe
Confidence            456666777788999999887  4444332211 1111          12222  3467778889999999999998655


Q ss_pred             eEEeecCCCceeEEEECC--CCCEEEEEeC------CCeEEEEEeecCCceeEEEEEeecC-------------------
Q 016982           91 TLVILRLNRAALCVQWSP--KENKFAVGSG------AKTVCICYYEQENNWWVSKLIRKRH-------------------  143 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~~~~-------------------  143 (379)
                      ......+... ..+.-+|  .+..++++..      +|.|.-+|.++++..+..... ...                   
T Consensus       145 ~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~-p~~~~~~~~~~~~~~~~~~~~t  222 (527)
T TIGR03075       145 SKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV-PGDMGYLDKADKPVGGEPGAKT  222 (527)
T ss_pred             eccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc-CCCcccccccccccccccccCC
Confidence            4432211110 1111122  1234555432      678888888887743332222 110                   


Q ss_pred             ---------CcCE-EEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcce------
Q 016982          144 ---------DSSV-TSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWA------  207 (379)
Q Consensus       144 ---------~~~v-~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v------  207 (379)
                               ...+ ..+++.|...++..+..+..-  |+-....-+-....+....+.++++..-.++.....+      
T Consensus       223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p--~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~  300 (527)
T TIGR03075       223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP--WNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV  300 (527)
T ss_pred             CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC--CCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence                     0011 123555555555555433222  2210000000001111112245666655554322211      


Q ss_pred             ---EEEEECCCCC---EEEEEcCCCeEEEEECCCCCc
Q 016982          208 ---FGVKWSPSGN---TLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       208 ---~~~~~sp~~~---~l~~~~~d~~i~v~d~~~~~~  238 (379)
                         .-+.+..+|+   .++.+..+|.+++.|..+++.
T Consensus       301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence               1222334665   677889999999999888764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.60  E-value=0.7  Score=44.00  Aligned_cols=120  Identities=10%  Similarity=0.039  Sum_probs=68.6

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC------CEEEEEeCCCeEEEEec-
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS------NRIVTVSHDRNSYVWNQ-   83 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~vw~~-   83 (379)
                      ..++....+.+...++.++.++.+...++.......... ......|.|+.++|-|      ++++.|..+..+.+.-. 
T Consensus       488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~-~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~  566 (1096)
T KOG1897|consen  488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH-KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL  566 (1096)
T ss_pred             CceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee-heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence            344444555555566666666677777776653222211 1134579999999853      26788877666554433 


Q ss_pred             cCCceeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC
Q 016982           84 EGSEWVPTLVI--LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN  131 (379)
Q Consensus        84 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~  131 (379)
                      .+.........  ..-+..|.-..+-.|..+|.++..||.+..|.++...
T Consensus       567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t  616 (1096)
T KOG1897|consen  567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINT  616 (1096)
T ss_pred             CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEccc
Confidence            23221111111  1112344445555568899999999999877766543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.54  E-value=0.77  Score=43.74  Aligned_cols=227  Identities=13%  Similarity=0.119  Sum_probs=131.0

Q ss_pred             EEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----------C---CeEEEEeccCCceee
Q 016982           25 VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-----------D---RNSYVWNQEGSEWVP   90 (379)
Q Consensus        25 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d---~~i~vw~~~~~~~~~   90 (379)
                      |+++ ..+.+++..++.-+--.++++.-+ .....+++.+....+.+.+.           .   ..++++|-++-+...
T Consensus       687 l~~~-~~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~  764 (1096)
T KOG1897|consen  687 LASA-NGGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS  764 (1096)
T ss_pred             EEEe-cCCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence            4443 235566665553211222333333 23456667664444443321           1   136677766665443


Q ss_pred             eEEeecC--CCceeEEEECCC-CCEEEEEeC----------CCeEEEEEeecCCceeEEEEE-eecCCcCEEEEEEcCCC
Q 016982           91 TLVILRL--NRAALCVQWSPK-ENKFAVGSG----------AKTVCICYYEQENNWWVSKLI-RKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        91 ~~~~~~~--~~~v~~~~~~~~-~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~  156 (379)
                      ...+...  ...+.++.|..| +.++++|..          .|.|.++.+...+.   .+.+ ...-.+.+.++.-- +|
T Consensus       765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---L~~v~e~~v~Gav~aL~~f-ng  840 (1096)
T KOG1897|consen  765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---LELVAETVVKGAVYALVEF-NG  840 (1096)
T ss_pred             eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---eeeeeeeeeccceeehhhh-CC
Confidence            3332221  123455568877 677777752          57888888887442   2222 12334555555433 56


Q ss_pred             cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      +++|.  -+..|++|+.                  ...+.++.-..+..++..+...-.|..++.|..-+++.+...+..
T Consensus       841 kllA~--In~~vrLye~------------------t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~  900 (1096)
T KOG1897|consen  841 KLLAG--INQSVRLYEW------------------TTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD  900 (1096)
T ss_pred             eEEEe--cCcEEEEEEc------------------cccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence            76664  4567999985                  334444444556677888888889999999988787776654433


Q ss_pred             Cceeeee--eeecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          237 SPLAQNV--AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       237 ~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                      +-....+  ..+...++++.+-.+..++.+-.++++.+...+.
T Consensus       901 eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  901 EGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             CCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence            3111221  2356678888888888888888888887766553

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.15  Score=48.96  Aligned_cols=145  Identities=14%  Similarity=0.102  Sum_probs=89.5

Q ss_pred             CceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCcee--EEEEEe-----ecCCcCEEEEEEcCCC-cEEEEeeCCCeE
Q 016982           99 RAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWW--VSKLIR-----KRHDSSVTSVAWHPNN-VFLATTSTDGKC  168 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~--~~~~~~-----~~~~~~v~~~~~~p~~-~~l~~~~~d~~i  168 (379)
                      -++..+...+|+...++...  +-.|..||++.-....  ..+.+.     ........++.|+|.- ...+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            45566666777765555433  3478888887543210  011110     1223445678888854 345666788889


Q ss_pred             EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee----
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA----  244 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----  244 (379)
                      ++..+.                 .....+..+.. ....++++|+|.|+.++.|-..|++.-|...-.  +...+.    
T Consensus       181 ~V~~~~-----------------~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~  240 (1405)
T KOG3630|consen  181 RVKSTK-----------------QLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPV  240 (1405)
T ss_pred             hhhhhh-----------------hhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeecccc--eeecccCCCc
Confidence            888762                 22233333322 445799999999999999999999998864432  111111    


Q ss_pred             eecCCeeeEEEecCCcEEE
Q 016982          245 FRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       245 ~~~~~i~~~~~s~~~~~l~  263 (379)
                      .....|.+++|...-.+++
T Consensus       241 ~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  241 EENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             CCCcceeEEEEecceeEEE
Confidence            1146799999998777776

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.48  E-value=0.3  Score=38.26  Aligned_cols=214  Identities=13%  Similarity=0.056  Sum_probs=107.8

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC---CEEEEEeCCCeEEEEeccCCc--eeee---EEe
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS---NRIVTVSHDRNSYVWNQEGSE--WVPT---LVI   94 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~vw~~~~~~--~~~~---~~~   94 (379)
                      .++.+--..|.|.-||..+++. ....+.+.  ++.++.+--.+   .+.+.++..-.|.-||.....  ....   ...
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v-~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKV-YRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             eEEEEEeccCceehhhhhhhhe-EEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            4444444567777788887632 22233332  23333332222   233333333334456633221  1111   111


Q ss_pred             ecCCCceeEEEECCCCCEEEEEeCC---------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeC
Q 016982           95 LRLNRAALCVQWSPKENKFAVGSGA---------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTST  164 (379)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~  164 (379)
                      ...+.+...-..+|+|++++-.-.|         |.++.|-....     .+.+ ...-.--+.++|+.+.+.+. +-+.
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~-----v~~i-~~~v~IsNgl~Wd~d~K~fY~iDsl  178 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ-----VELI-WNCVGISNGLAWDSDAKKFYYIDSL  178 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC-----ceee-ehhccCCccccccccCcEEEEEccC
Confidence            1123456667788999984332222         33333322111     1111 12223335788887765444 4556


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeec----CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL----SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      +-.|.-||..-..-+.           ...+.+..++.    .....-.++...+|++.++.-..++|.-.|..+++. +
T Consensus       179 n~~V~a~dyd~~tG~~-----------snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~-L  246 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDL-----------SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI-L  246 (310)
T ss_pred             ceEEeeeecCCCcccc-----------cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE-E
Confidence            7778778852111111           11122222211    011123455567888888887889999999999884 4


Q ss_pred             eeeeeecCCeeeEEEec
Q 016982          241 QNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~  257 (379)
                      .++......|++++|--
T Consensus       247 ~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  247 LEIKLPTPQITSCCFGG  263 (310)
T ss_pred             EEEEcCCCceEEEEecC
Confidence            67776678899999964

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.45  E-value=0.4  Score=44.59  Aligned_cols=148  Identities=13%  Similarity=0.185  Sum_probs=93.5

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEE----EEEec----------------cCCCceEEEEEcC--CCCEEEEEeCCCeEE
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEK----LHVLQ----------------KHDQIVSGIDWSV--RSNRIVTVSHDRNSY   79 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~----~~~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~   79 (379)
                      .++++++. .+.|.||+...-...+    ...+.                .....|+.|....  +...|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777765 5799999986432111    00100                0112355554433  236788899999999


Q ss_pred             EEeccC-------C-----------ceeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCeEEEEEeecCC-ceeEEEE
Q 016982           80 VWNQEG-------S-----------EWVPTLVILRLNRAALCVQWS--PKENKFAVGSGAKTVCICYYEQEN-NWWVSKL  138 (379)
Q Consensus        80 vw~~~~-------~-----------~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~  138 (379)
                      +|.+++       .           ...+.+. ......++.++++  ...++||+++....|.||-+.... .......
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            997521       0           0112222 2245678999998  788899999988889988776632 1111111


Q ss_pred             EeecCCcCEEEEEEcCCC---c---EEEEeeCCCeEEEEec
Q 016982          139 IRKRHDSSVTSVAWHPNN---V---FLATTSTDGKCRVFST  173 (379)
Q Consensus       139 ~~~~~~~~v~~~~~~p~~---~---~l~~~~~d~~i~v~d~  173 (379)
                        ..+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       207 --~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 --HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             --cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              2456678899998753   2   7788888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.41  E-value=0.58  Score=40.91  Aligned_cols=39  Identities=21%  Similarity=0.073  Sum_probs=32.0

Q ss_pred             EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          199 QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       199 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      .+......+.++..+|++++.++...-|.|.++|+..+.
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~  340 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI  340 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh
Confidence            344445568899999999999998888999999988764

>PRK10115 protease 2; Provisional

Probab=96.23  E-value=1.1  Score=42.48  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=66.2

Q ss_pred             ceeEEEeCCCCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEE
Q 016982           12 CITCHAWSPDHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYV   80 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v   80 (379)
                      .+..+.+||||++|+.+..     ...|++.|+.++. .....+.+ ..  ..++|++|++.|+....+      ..|..
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~-~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN-WYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC-CCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            4677899999999988643     2368888887762 11122222 11  469999999877665432      35888


Q ss_pred             EeccCCceeeeEEeecCCCcee-EEEECCCCCEEEEEeC---CCeEEEEEee
Q 016982           81 WNQEGSEWVPTLVILRLNRAAL-CVQWSPKENKFAVGSG---AKTVCICYYE  128 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~v~i~~~~  128 (379)
                      +++.++................ .+..+.++++++..+.   ++.+.+++..
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            8888872112222222222233 3333447877665544   4567777743

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.51  Score=38.39  Aligned_cols=157  Identities=13%  Similarity=0.033  Sum_probs=95.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV  135 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~  135 (379)
                      -+..+.++  +++...+..+.-+++.|+.+.............+-..++..+  |++..++..|.-+-+.|+.......+
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCcee
Confidence            44556665  557777777778999999887643433333333445555554  88988888665666788877764334


Q ss_pred             EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC
Q 016982          136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS  215 (379)
Q Consensus       136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  215 (379)
                      .... .........++.+  |++-..+..|+-+.+-|+.-               ......+..... ...+.++..+++
T Consensus       164 agry-a~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSn---------------p~sPvli~~~n~-g~g~~sv~vsdn  224 (370)
T COG5276         164 AGRY-ALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSN---------------PHSPVLIGSYNT-GPGTYSVSVSDN  224 (370)
T ss_pred             eeee-ccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccC---------------CCCCeEEEEEec-CCceEEEEecCC
Confidence            4443 3334444566664  66777777899999999730               011122222222 235778888877


Q ss_pred             CCEEEEEcCCCeEEEEECCCCC
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      ..+++..  +--+.+-|..+.+
T Consensus       225 r~y~vvy--~egvlivd~s~~s  244 (370)
T COG5276         225 RAYLVVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             eeEEEEc--ccceEEEecCCCC
Confidence            7766654  3446677766654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.13  E-value=0.83  Score=39.95  Aligned_cols=146  Identities=16%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             eeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccc
Q 016982          101 ALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI  180 (379)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~  180 (379)
                      ...+..++++.+++++.. |.+.. ..+.+...+  ..........+..+.|.+++..++++ ..|.+..=+        
T Consensus       241 f~~v~~~~dG~~~~vg~~-G~~~~-s~d~G~~~W--~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~--------  307 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSR-GNFYL-TWEPGQPYW--QPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSK--------  307 (398)
T ss_pred             eeeEEEcCCCCEEEEECC-ccEEE-ecCCCCcce--EEecCCCccceeeeeEcCCCCEEEEe-CCceEEEec--------
Confidence            344566778877777664 44322 112222111  11113445678899999998877765 556554332        


Q ss_pred             ccccCCCccCCcccc-----eEEEeec--CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee---eecCCe
Q 016982          181 KEKKEGTSSDTKFGE-----QILQLDL--SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA---FRDLPL  250 (379)
Q Consensus       181 ~~~~~~~~~~~~~~~-----~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~i  250 (379)
                                 ..+.     .......  ....+..+.|.+++..+++| ..|.+..-. ..++.- +...   .-...+
T Consensus       308 -----------d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW-~~~~~~~~~~~~l  373 (398)
T PLN00033        308 -----------GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSW-KRDKGADNIAANL  373 (398)
T ss_pred             -----------CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcce-eEccccCCCCcce
Confidence                       1111     1222211  12358899999888876665 567665553 333321 2211   223568


Q ss_pred             eeEEEecCCcEEEEEeCCCeEEE
Q 016982          251 RDVLFVSEKMVIGVGFDCNPMVF  273 (379)
Q Consensus       251 ~~~~~s~~~~~l~~~~d~~~~i~  273 (379)
                      +.+.|.++++.++.|.+|.+.-|
T Consensus       374 y~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        374 YSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             eEEEEcCCCceEEEeCCcEEEEe
Confidence            89999998999999988876543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=0.17  Score=43.54  Aligned_cols=143  Identities=11%  Similarity=0.130  Sum_probs=84.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeccCC--ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE
Q 016982           59 GIDWSVRSNRIVTVSHDRNSYVWNQEGS--EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS  136 (379)
Q Consensus        59 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  136 (379)
                      .+-|. |.+..+.+...|.+.=|-+...  .....+. ....++|.++.|++|.+.+|+--.+.+|.+++....+.....
T Consensus        27 gvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfd-m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   27 GVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFD-MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             ceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceee-ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            34443 3333333444455666655443  2223333 335679999999999999999999999999988544321000


Q ss_pred             EEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC
Q 016982          137 KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG  216 (379)
Q Consensus       137 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  216 (379)
                      ..-.......|....|..+ .-+|..+..| +-+|-+                 .+....++..+.+...|.--.|.|+.
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v-----------------~pekrslRlVks~~~nvnWy~yc~et  165 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQV-----------------LPEKRSLRLVKSHNLNVNWYMYCPET  165 (657)
T ss_pred             HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEE-----------------chhhhhhhhhhhcccCccEEEEcccc
Confidence            0000223445888999854 5566665544 566654                 13333444445566667777888877


Q ss_pred             CEEEEE
Q 016982          217 NTLAYV  222 (379)
Q Consensus       217 ~~l~~~  222 (379)
                      +.++.+
T Consensus       166 ~v~LL~  171 (657)
T KOG2377|consen  166 AVILLS  171 (657)
T ss_pred             ceEeee
Confidence            764443

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.06  E-value=0.054  Score=51.76  Aligned_cols=148  Identities=16%  Similarity=0.124  Sum_probs=89.4

Q ss_pred             cceeEEEeCCCCcEEEEE--ecCCeEEEEEecCCc---eEEEEEe------ccCCCceEEEEEcCCC-CEEEEEeCCCeE
Q 016982           11 QCITCHAWSPDHAMVAFC--PNNNEVHIYKLIQEK---WEKLHVL------QKHDQIVSGIDWSVRS-NRIVTVSHDRNS   78 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~--~~dg~i~i~~~~~~~---~~~~~~~------~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   78 (379)
                      -+|..+..++|+...++.  +.+-.|..||+..=.   .+....|      .....-..++.|+|.= ...+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            456666667787665443  334478899986421   0111111      1122345678898864 234566778888


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      ++..+....  ............++++|+|.|+.+++|-..|++.-|.........+...- ......|.+++|-....+
T Consensus       181 ~V~~~~~~~--~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp-~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  181 RVKSTKQLA--QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP-VEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhh--hhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC-cCCCcceeEEEEecceeE
Confidence            888765443  22222345678899999999999999999999987755433210011111 122568999999876666


Q ss_pred             EEE
Q 016982          159 LAT  161 (379)
Q Consensus       159 l~~  161 (379)
                      +++
T Consensus       258 lvv  260 (1405)
T KOG3630|consen  258 LVV  260 (1405)
T ss_pred             EEE
Confidence            554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.95  E-value=1.6  Score=41.76  Aligned_cols=107  Identities=9%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCC--------ceEEEEEcC----------------CCCEEEEEeCCCe
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ--------IVSGIDWSV----------------RSNRIVTVSHDRN   77 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~~~~~d~~   77 (379)
                      +..|.+++.++.|.-.|..++  +.+-.+.....        ....+++..                .+..++.++.|+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TG--k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATG--KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCC--cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence            456666777888988898887  34444332111        012233321                2347888889999


Q ss_pred             EEEEeccCCceeeeEEeecCCCce-------------eEEEECC--CCCEEEEEeC----------CCeEEEEEeecCCc
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAA-------------LCVQWSP--KENKFAVGSG----------AKTVCICYYEQENN  132 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~v~i~~~~~~~~  132 (379)
                      +.-.|.++++....+..   .+.+             ..+.-.|  .+..+++|+.          +|.|+-+|.++++.
T Consensus       272 LiALDA~TGk~~W~fg~---~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl  348 (764)
T TIGR03074       272 LIALDADTGKLCEDFGN---NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL  348 (764)
T ss_pred             EEEEECCCCCEEEEecC---CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence            99999999985544321   1111             1111122  2345666643          57899999988875


Q ss_pred             e
Q 016982          133 W  133 (379)
Q Consensus       133 ~  133 (379)
                      .
T Consensus       349 ~  349 (764)
T TIGR03074       349 V  349 (764)
T ss_pred             e
Confidence            3

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.88  E-value=0.069  Score=29.27  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=26.3

Q ss_pred             cceEEEEECCCC---CEEEEEcCCCeEEEEECCCC
Q 016982          205 SWAFGVKWSPSG---NTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       205 ~~v~~~~~sp~~---~~l~~~~~d~~i~v~d~~~~  236 (379)
                      +.+.++.|+|+.   .+|+.+-..+.|.++|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            358899999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.85  E-value=1.1  Score=39.22  Aligned_cols=146  Identities=12%  Similarity=0.122  Sum_probs=87.4

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEe--ccCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEeccCC-------c
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVL--QKHDQIVSGIDWSV-----RSNRIVTVSHDRNSYVWNQEGS-------E   87 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~vw~~~~~-------~   87 (379)
                      ...+++|+..|.++||+...+..+....+  ..-..+|..++.-.     +...||. -.-..+.+|.+...       .
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            36899999999999999876532221111  11345788777542     2234554 45577888887321       1


Q ss_pred             eeeeEEeecC--CCceeEEEECC----C-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           88 WVPTLVILRL--NRAALCVQWSP----K-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        88 ~~~~~~~~~~--~~~v~~~~~~~----~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      .........|  ......+++-|    . -.++.+-+.||.+.+|+-+.-.   ....+  ...--.-.+.+.+....|+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~---f~~~l--p~~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA---FSRFL--PDFLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE---EEEEc--CCCCCCcCeEEeecCCEEE
Confidence            1111112223  23344444444    2 3578888999999998765532   22222  1122223467888888999


Q ss_pred             EeeCCCeEEEEec
Q 016982          161 TTSTDGKCRVFST  173 (379)
Q Consensus       161 ~~~~d~~i~v~d~  173 (379)
                      +++.+..+.-|..
T Consensus       191 t~sss~~l~~Yky  203 (418)
T PF14727_consen  191 TASSSWTLECYKY  203 (418)
T ss_pred             EecCceeEEEecH
Confidence            9999989998875

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.73  E-value=1.4  Score=39.19  Aligned_cols=112  Identities=17%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCCEEEEE-eCCC----eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC---------e-
Q 016982           57 VSGIDWSVRSNRIVTV-SHDR----NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK---------T-  121 (379)
Q Consensus        57 v~~~~~~~~~~~l~~~-~~d~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------~-  121 (379)
                      +....++|+|++++.+ +..|    .++++|+.+++.+.... .  ......+.|.++++.|+....+.         . 
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-E--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-E--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-c--ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            3467899999988765 3434    49999999997554321 1  11223399999988877765433         2 


Q ss_pred             -EEEEEeecCCceeEEEEEeecCC-cC-EEEEEEcCCCcEEEEeeC---C-CeEEEEec
Q 016982          122 -VCICYYEQENNWWVSKLIRKRHD-SS-VTSVAWHPNNVFLATTST---D-GKCRVFST  173 (379)
Q Consensus       122 -v~i~~~~~~~~~~~~~~~~~~~~-~~-v~~~~~~p~~~~l~~~~~---d-~~i~v~d~  173 (379)
                       |+.|.+.+....  ...+..... .. ...+..++++++|+....   + ..+.+.++
T Consensus       203 ~v~~~~~gt~~~~--d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  203 QVYRHKLGTPQSE--DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             EEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEEEECCCChHh--CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence             555555544321  122222222 23 678889999988775433   2 34666665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PLN02153 epithiospecifier protein

Probab=95.59  E-value=1.3  Score=38.07  Aligned_cols=69  Identities=14%  Similarity=0.283  Sum_probs=40.1

Q ss_pred             CCcEEEEEecC-----CeEEEEEecCCceEEEEEeccC----CCceEEEEEcCCCCEEEEEeCC-----------CeEEE
Q 016982           21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKH----DQIVSGIDWSVRSNRIVTVSHD-----------RNSYV   80 (379)
Q Consensus        21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-----------~~i~v   80 (379)
                      ++++++.|+.+     ..+.+||..+.+|..+..+...    ...-.+++. -+++..+.|+.+           ..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence            45667777653     3578899988877766544211    111122222 345556666643           24778


Q ss_pred             EeccCCceee
Q 016982           81 WNQEGSEWVP   90 (379)
Q Consensus        81 w~~~~~~~~~   90 (379)
                      ||..+.++..
T Consensus       164 yd~~~~~W~~  173 (341)
T PLN02153        164 YNIADGKWVQ  173 (341)
T ss_pred             EECCCCeEee
Confidence            9998887654

>PHA03098 kelch-like protein; Provisional

Probab=95.58  E-value=0.56  Score=43.25  Aligned_cols=145  Identities=11%  Similarity=0.101  Sum_probs=74.8

Q ss_pred             CCcEEEEEecC-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEeccCCcee
Q 016982           21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQEGSEWV   89 (379)
Q Consensus        21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~~   89 (379)
                      ++++++.|+.+     ..+..||..+++|.....+....... +++. -+++..+.|+.+      ..+..||..++++.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            56677777764     35778898888777655544322221 2222 245566666632      35889999888765


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCC--------eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAK--------TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ..-.. +....-.++. ..++..++.|+.+.        .+.+||..+.. |.....+ .........+.+  +++.++.
T Consensus       420 ~~~~~-p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~-~~~r~~~~~~~~--~~~iyv~  493 (534)
T PHA03098        420 KGSPL-PISHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK-WTELSSL-NFPRINASLCIF--NNKIYVV  493 (534)
T ss_pred             ecCCC-CccccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc-eeeCCCC-CcccccceEEEE--CCEEEEE
Confidence            43211 1111111222 22466666666431        26677766543 3222211 111111122222  6777777


Q ss_pred             eeCC-----CeEEEEec
Q 016982          162 TSTD-----GKCRVFST  173 (379)
Q Consensus       162 ~~~d-----~~i~v~d~  173 (379)
                      |+.+     ..+.+||.
T Consensus       494 GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        494 GGDKYEYYINEIEVYDD  510 (534)
T ss_pred             cCCcCCcccceeEEEeC
Confidence            7754     46777875

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.57  E-value=0.061  Score=29.47  Aligned_cols=32  Identities=22%  Similarity=0.526  Sum_probs=26.5

Q ss_pred             cceeEEEeCCCC---cEEEEEecCCeEEEEEecCC
Q 016982           11 QCITCHAWSPDH---AMVAFCPNNNEVHIYKLIQE   42 (379)
Q Consensus        11 ~~i~~~~~s~~~---~~l~~~~~dg~i~i~~~~~~   42 (379)
                      ++|.++.|||+.   .+|+.+-..|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.55  E-value=1.1  Score=36.86  Aligned_cols=207  Identities=11%  Similarity=0.048  Sum_probs=111.2

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCC-----ceEEEEEecc-----CCCceEEEEEcCCCC------------EE
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-----KWEKLHVLQK-----HDQIVSGIDWSVRSN------------RI   69 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-----~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l   69 (379)
                      .-+.|+++|.+.+-++....+...+||....     ....+-++..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            3468999999988787777889999998611     1123333332     123567777764322            35


Q ss_pred             EEEeCCCeEEEEeccCCce---eeeEEeecC-CCce-eEEEECC--CCCEEEEEe-CCCeEEEEEeecCCceeEEEEEe-
Q 016982           70 VTVSHDRNSYVWNQEGSEW---VPTLVILRL-NRAA-LCVQWSP--KENKFAVGS-GAKTVCICYYEQENNWWVSKLIR-  140 (379)
Q Consensus        70 ~~~~~d~~i~vw~~~~~~~---~~~~~~~~~-~~~v-~~~~~~~--~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~-  140 (379)
                      +.+++||+|.-|...-+..   ...+..... ...| ..+++..  .+.+|..+. ..++|.+||-.-.... +...+. 
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~D  182 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFID  182 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCccC
Confidence            7778999999998543321   111222111 2333 3444443  244554443 4678888765433210 000000 


Q ss_pred             ---ecCCc-----------CEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec--CC
Q 016982          141 ---KRHDS-----------SVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL--SF  204 (379)
Q Consensus       141 ---~~~~~-----------~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  204 (379)
                         ..-..           .|+-..-.++.+.=+.|.--|.|-+||+                   .+..++++..  .-
T Consensus       183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-------------------~G~l~~r~as~g~L  243 (336)
T TIGR03118       183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-------------------NGQLLRRVASSGRL  243 (336)
T ss_pred             CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-------------------CCcEEEEeccCCcc
Confidence               00000           0111111112222222333468888885                   4677776632  22


Q ss_pred             cceEEEEECC------CCCEEEEEcCCCeEEEEECCCCCc
Q 016982          205 SWAFGVKWSP------SGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       205 ~~v~~~~~sp------~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      ...+.|+..|      .|.+|+---.||+|..||..++..
T Consensus       244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~  283 (336)
T TIGR03118       244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ  283 (336)
T ss_pred             cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence            3457788876      466676555799999999887663

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.50  E-value=1.7  Score=38.66  Aligned_cols=110  Identities=9%  Similarity=0.042  Sum_probs=61.9

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-----cCCCceEEEEEcCCC------CEEEEEe-----
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-----KHDQIVSGIDWSVRS------NRIVTVS-----   73 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~------~~l~~~~-----   73 (379)
                      -...+.|+|.|||++|++-...|.|++++..++....+..+.     ........|+++|+-      .+|....     
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            456788999999988877654699999986554322222221     124567899999873      2443331     


Q ss_pred             -----CCCeEEEEeccCC--ce---eeeEEeec--CCCceeEEEECCCCCEEEEEeCC
Q 016982           74 -----HDRNSYVWNQEGS--EW---VPTLVILR--LNRAALCVQWSPKENKFAVGSGA  119 (379)
Q Consensus        74 -----~d~~i~vw~~~~~--~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d  119 (379)
                           ....|.-|.+...  ..   ...+....  ....-..|.|.|||.++++.+..
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 1233544554321  11   11121110  01123578899999876665543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=95.48  E-value=1.6  Score=38.27  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=28.5

Q ss_pred             CCcEEEEEecC-----------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 016982           21 DHAMVAFCPNN-----------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD   75 (379)
Q Consensus        21 ~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   75 (379)
                      ++.+.+.|+.+           ..+..||..+++|..+.........-.+....-+++..+.|+.+
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~  149 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN  149 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence            46667777653           24778888887776654321111111111221356666776643

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=1.2  Score=36.35  Aligned_cols=157  Identities=12%  Similarity=-0.009  Sum_probs=92.9

Q ss_pred             CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982           97 LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK  176 (379)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~  176 (379)
                      ...-+..+.++  +++...+..+.-+++.|+.+.........+  ...+.-.++..  .|++...+..+.-+.+.|+.. 
T Consensus        85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~l--nt~gyaygv~v--sGn~aYVadlddgfLivdvsd-  157 (370)
T COG5276          85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFL--NTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSD-  157 (370)
T ss_pred             hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccc--cCCceEEEEEe--cCCEEEEeeccCcEEEEECCC-
Confidence            35566777777  557778878888999999887642222222  12233344444  678888877666677888731 


Q ss_pred             ccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecCCeeeEEE
Q 016982          177 GVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLF  255 (379)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~  255 (379)
                                    ................-..++.|  |++-..+..|+-+.+.|+..+......-.. .+..+.++..
T Consensus       158 --------------pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~v  221 (370)
T COG5276         158 --------------PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSV  221 (370)
T ss_pred             --------------CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEe
Confidence                          11222223333333444566666  677777778999999999887654222111 1235777777


Q ss_pred             ecCCcEEEEEeCCCeEEEEecC
Q 016982          256 VSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       256 s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                      +++--+++.. +..+.+-+.++
T Consensus       222 sdnr~y~vvy-~egvlivd~s~  242 (370)
T COG5276         222 SDNRAYLVVY-DEGVLIVDVSG  242 (370)
T ss_pred             cCCeeEEEEc-ccceEEEecCC
Confidence            7765555543 34444444443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.33  E-value=0.024  Score=52.62  Aligned_cols=119  Identities=15%  Similarity=0.281  Sum_probs=73.4

Q ss_pred             ccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEecc--CCceeeeEEe---ecCCCceeEEEECC---CCCEEEEEeCCCe
Q 016982           51 QKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWNQE--GSEWVPTLVI---LRLNRAALCVQWSP---KENKFAVGSGAKT  121 (379)
Q Consensus        51 ~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~--~~~~~~~~~~---~~~~~~v~~~~~~~---~~~~l~~~~~d~~  121 (379)
                      ++..+.+..++|.... ..+.  -.-|.+.||++.  .|+..+.+..   ......+.-+.|.|   +.-++..+-.++.
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~  206 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE  206 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence            4455666667764321 2222  223668888875  3443333322   22344556677766   5567777778899


Q ss_pred             EEEEEeecCCceeEEEEEeecCCcCEEEE-----------EEcCCCcEEEEeeCCCeEEEEecccc
Q 016982          122 VCICYYEQENNWWVSKLIRKRHDSSVTSV-----------AWHPNNVFLATTSTDGKCRVFSTFIK  176 (379)
Q Consensus       122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~-----------~~~p~~~~l~~~~~d~~i~v~d~~~~  176 (379)
                      +++.+++...    ...+ .+|...+..+           ..+|||+.|++...||.++.|.+.+.
T Consensus       207 i~lL~~~ra~----~~l~-rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~  267 (1283)
T KOG1916|consen  207 IRLLNINRAL----RSLF-RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT  267 (1283)
T ss_pred             eeEeeechHH----HHHH-HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence            9998776654    2233 4455544433           36899999999999999999987543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=95.26  E-value=1.8  Score=37.41  Aligned_cols=96  Identities=15%  Similarity=0.163  Sum_probs=51.1

Q ss_pred             CCcEEEEEecC-----------CeEEEEEecCCceEEEEEe-ccCCCceEEEEEcCCCCEEEEEeCC-------------
Q 016982           21 DHAMVAFCPNN-----------NEVHIYKLIQEKWEKLHVL-QKHDQIVSGIDWSVRSNRIVTVSHD-------------   75 (379)
Q Consensus        21 ~~~~l~~~~~d-----------g~i~i~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-------------   75 (379)
                      ++++.+.|+.+           ..+..||..+++|..+... .........+. .-+++..+.|+.+             
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~  141 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFS-LHNGQAYFTGGVNKNIFDGYFADLSA  141 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEE-EeCCEEEEEcCcChHHHHHHHhhHhh
Confidence            56777777653           2577889888877665421 11111111111 2356666776653             


Q ss_pred             --------------------------CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC
Q 016982           76 --------------------------RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG  118 (379)
Q Consensus        76 --------------------------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  118 (379)
                                                ..+.+||..+.++...-........-.+++ .-++++++.|+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~  209 (346)
T TIGR03547       142 ADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGE  209 (346)
T ss_pred             cCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeee
Confidence                                      468899998887655432211111112222 235677777765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02790 Kelch-like protein; Provisional

Probab=95.15  E-value=0.8  Score=41.54  Aligned_cols=142  Identities=10%  Similarity=0.046  Sum_probs=75.0

Q ss_pred             CCcEEEEEecC--CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---CeEEEEeccCCceeeeEEee
Q 016982           21 DHAMVAFCPNN--NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---RNSYVWNQEGSEWVPTLVIL   95 (379)
Q Consensus        21 ~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~   95 (379)
                      ++.+.+.|+.+  ..+..||..+++|..+..+...........  -+|+..+.|+.+   ..+..||..++++...-...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~  395 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY  395 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence            56666777753  357888887777766655543222222222  246666776654   34778998888765432111


Q ss_pred             cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-----CeEEE
Q 016982           96 RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-----GKCRV  170 (379)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~i~v  170 (379)
                      ........+  .-+++..+.|+   .+.+||.+++. |.....+ .........+.+  +++..+.|+.+     ..+..
T Consensus       396 ~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~-W~~~~~m-~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~  466 (480)
T PHA02790        396 YPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNT-WTLIDDP-IYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEV  466 (480)
T ss_pred             CccccceEE--EECCEEEEECC---ceEEecCCCCc-EeEcCCC-CCCccccEEEEE--CCEEEEECCcCCCcccceEEE
Confidence            111111122  22455556553   46678876543 4433333 111222222222  67888888764     34666


Q ss_pred             Eec
Q 016982          171 FST  173 (379)
Q Consensus       171 ~d~  173 (379)
                      ||.
T Consensus       467 Yd~  469 (480)
T PHA02790        467 YNN  469 (480)
T ss_pred             EEC
Confidence            764

>PLN02193 nitrile-specifier protein

Probab=95.15  E-value=2.4  Score=38.38  Aligned_cols=148  Identities=11%  Similarity=0.116  Sum_probs=69.0

Q ss_pred             CcEEEEEecC-------CeEEEEEecCCceEEEEEeccCCC--ceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCc
Q 016982           22 HAMVAFCPNN-------NEVHIYKLIQEKWEKLHVLQKHDQ--IVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSE   87 (379)
Q Consensus        22 ~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~   87 (379)
                      +.+++.|+.+       ..+.+||+.+.+|..+........  ........-++...+.|+.+     ..+..+|+.+.+
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            4566666642       247788988876664322111111  11111112234555666644     358889998887


Q ss_pred             eeeeEEee--cCCCceeEEEECCCCCEEEEEeCCC-----eEEEEEeecCCceeEEEEEe--ecCCcCEEEEEEcCCCcE
Q 016982           88 WVPTLVIL--RLNRAALCVQWSPKENKFAVGSGAK-----TVCICYYEQENNWWVSKLIR--KRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        88 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~  158 (379)
                      +.......  +....-.++.. -++++++.|+.++     .+..||+.+.. |.......  .........+.+  +++.
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~~~~~~~--~gki  331 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGGAGLEVV--QGKV  331 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCCcEEEEE--CCcE
Confidence            65432211  11111112222 2456666776543     35566655443 22111100  011111112222  5677


Q ss_pred             EEEeeCC----CeEEEEec
Q 016982          159 LATTSTD----GKCRVFST  173 (379)
Q Consensus       159 l~~~~~d----~~i~v~d~  173 (379)
                      ++.++.+    ..+.+||+
T Consensus       332 yviGG~~g~~~~dv~~yD~  350 (470)
T PLN02193        332 WVVYGFNGCEVDDVHYYDP  350 (470)
T ss_pred             EEEECCCCCccCceEEEEC
Confidence            7777655    35778886

>PLN02153 epithiospecifier protein

Probab=95.04  E-value=2  Score=36.95  Aligned_cols=68  Identities=10%  Similarity=0.210  Sum_probs=39.1

Q ss_pred             CCcEEEEEecC-------CeEEEEEecCCceEEEEEeccCCC----ceEEEEEcCCCCEEEEEeCC-----CeEEEEecc
Q 016982           21 DHAMVAFCPNN-------NEVHIYKLIQEKWEKLHVLQKHDQ----IVSGIDWSVRSNRIVTVSHD-----RNSYVWNQE   84 (379)
Q Consensus        21 ~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~   84 (379)
                      ++++++.|+.+       ..+.+||..+.+|...........    ....+.+  +++.++.|+.+     ..+.+||..
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            45667777653       358889988877765543321111    1122222  35566666643     357889998


Q ss_pred             CCceee
Q 016982           85 GSEWVP   90 (379)
Q Consensus        85 ~~~~~~   90 (379)
                      +.++..
T Consensus       110 t~~W~~  115 (341)
T PLN02153        110 KNEWTF  115 (341)
T ss_pred             CCEEEE
Confidence            887654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.91  E-value=0.18  Score=40.05  Aligned_cols=73  Identities=11%  Similarity=0.159  Sum_probs=52.2

Q ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCceeee------ee-------eecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982          212 WSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN------VA-------FRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       212 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~-------~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      +..++.+|++-..+|.+++||+.+.+.....      +.       .....|..+..+.+|.-|+.-+++..+.|+.+- 
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L-   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL-   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc-
Confidence            3456888999999999999999887543322      11       234568888899899888877778888887553 


Q ss_pred             CcEEEEE
Q 016982          279 GIWTFIK  285 (379)
Q Consensus       279 ~~~~~~~  285 (379)
                      +.|..+.
T Consensus        97 ~~W~~vs  103 (219)
T PF07569_consen   97 GCWIRVS  103 (219)
T ss_pred             ceeEEec
Confidence            3466543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=2.5  Score=36.87  Aligned_cols=105  Identities=15%  Similarity=0.172  Sum_probs=70.3

Q ss_pred             ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE--EEeecCCcceEEEEECCCCCE
Q 016982          141 KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI--LQLDLSFSWAFGVKWSPSGNT  218 (379)
Q Consensus       141 ~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~  218 (379)
                      ....++|.++.|++|++.||+--.+..|.+++.-.                ...+..  .+-+.....|....|+.+. -
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~----------------d~~~l~~~~~ck~k~~~IlGF~W~~s~-e  125 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP----------------DNSQLEYTQECKTKNANILGFCWTSST-E  125 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCC----------------CchhhHHHHHhccCcceeEEEEEecCe-e
Confidence            34567999999999999999999999999997410                001111  1112224458889998763 4


Q ss_pred             EEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982          219 LAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       219 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                      +|.-... .+-+|-....+..++.++.+...|.=..|.++.+++.
T Consensus       126 ~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  126 IAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             EEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence            5544433 3666765554444566777888888899999887554

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.72  E-value=2.1  Score=35.68  Aligned_cols=183  Identities=10%  Similarity=0.060  Sum_probs=89.6

Q ss_pred             eEEEEeccCCceeeeEEeecC----CCceeEEEECCCC-----CEEEEE-eCCCeEEEEEeecCCceeEEEEEe------
Q 016982           77 NSYVWNQEGSEWVPTLVILRL----NRAALCVQWSPKE-----NKFAVG-SGAKTVCICYYEQENNWWVSKLIR------  140 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~-----~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~------  140 (379)
                      +|.+||+.+++.+..+.+..+    .+....+.+....     .++..+ +..+.|.++|+.+++.|.+.....      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            688889998887777765432    3456777776522     233333 234578899998876432211100      


Q ss_pred             ---------ecCCcCEEEEEEcC---CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceE
Q 016982          141 ---------KRHDSSVTSVAWHP---NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAF  208 (379)
Q Consensus       141 ---------~~~~~~v~~~~~~p---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  208 (379)
                               ......+..++.+|   +++.|......+. ++|.+.+.  .++.......  ......+..+-.......
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~--~L~~~~~~~~--~~~~~~v~~lG~k~~~s~  189 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTS--VLRDPSLSDA--QALASQVQDLGDKGSQSD  189 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHH--HHCSTT--HH--H-HHHT-EEEEE---SEC
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHH--HhhCcccccc--ccccccceeccccCCCCc
Confidence                     01122356666655   5556665543331 23333111  1111111000  000112222211123456


Q ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCc--eeeeeeee---cCCeeeEEEec--CCcEEEE
Q 016982          209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSP--LAQNVAFR---DLPLRDVLFVS--EKMVIGV  264 (379)
Q Consensus       209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~---~~~i~~~~~s~--~~~~l~~  264 (379)
                      .++++++|.++++--..+.|..|+..+...  ....+...   -..+.++.+.+  +|.+.+.
T Consensus       190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~  252 (287)
T PF03022_consen  190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL  252 (287)
T ss_dssp             EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred             eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence            788999999888888999999999876321  11222211   23456777777  6655443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.57  E-value=0.31  Score=42.10  Aligned_cols=164  Identities=10%  Similarity=0.036  Sum_probs=96.7

Q ss_pred             CCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc----CEE-EEEEcCCCcEEEEeeCCCeEEEEe
Q 016982           98 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS----SVT-SVAWHPNNVFLATTSTDGKCRVFS  172 (379)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~p~~~~l~~~~~d~~i~v~d  172 (379)
                      ...+..+-..|||+.+.+-+. ..+.++++....- ...+.. ....+    .|+ .+..-..|..+++++.||.|.-|-
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l-~~rkl~-~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSL-QIRKLV-DDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeeccccc-chhhhh-hcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            356777888999998888775 6788888876542 011222 11111    111 122223456788888999988884


Q ss_pred             ccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeee
Q 016982          173 TFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRD  252 (379)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~  252 (379)
                            +.|....+      .-..++.+.....++..+.-..+.+-+++-+..|++.++.....+.+...-  --..+.-
T Consensus       297 ------dvr~~~~p------~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~  362 (733)
T COG4590         297 ------DVRRDGQP------HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQL  362 (733)
T ss_pred             ------eeecCCCC------cceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcce
Confidence                  33333221      122233333333344444322334456677788888888654444332221  1235667


Q ss_pred             EEEecCCcEEEEEeCCCeEEEEecCC
Q 016982          253 VLFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       253 ~~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      +++||.+.+++.-..++++++..++.
T Consensus       363 ~~~Sp~~~~Ll~e~~gki~~~~l~Nr  388 (733)
T COG4590         363 VAMSPNQAYLLSEDQGKIRLAQLENR  388 (733)
T ss_pred             eeeCcccchheeecCCceEEEEecCC
Confidence            89999999999888899999887653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.53  E-value=1.8  Score=33.82  Aligned_cols=115  Identities=17%  Similarity=0.224  Sum_probs=69.1

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---C---eEEEE---e
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---R---NSYVW---N   82 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~---~i~vw---~   82 (379)
                      ....++-++. +.|+.+...+.|.+|++.+...+....+..- +.|..+.++..|++|+|--.+   .   .+++|   +
T Consensus        19 EP~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence            3344444432 3343334557899999996656777777754 789999999999999986432   1   45654   2


Q ss_pred             cc--CCceee---------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC
Q 016982           83 QE--GSEWVP---------------------TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE  130 (379)
Q Consensus        83 ~~--~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~  130 (379)
                      ..  ..+...                     .++ .+-+.++.+++..|-..-|++|+ ++.+.+|.+...
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiE-lPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIE-LPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEE-ecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            21  111111                     111 12345677888888443455555 367888877543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.50  E-value=4.3  Score=38.18  Aligned_cols=152  Identities=13%  Similarity=0.125  Sum_probs=87.7

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeee----EEe--e--------------cCCCceeEEEECC--CCCEEEEEeCCCeEE
Q 016982           66 SNRIVTVSHDRNSYVWNQEGSEWVPT----LVI--L--------------RLNRAALCVQWSP--KENKFAVGSGAKTVC  123 (379)
Q Consensus        66 ~~~l~~~~~d~~i~vw~~~~~~~~~~----~~~--~--------------~~~~~v~~~~~~~--~~~~l~~~~~d~~v~  123 (379)
                      .++++++. .+.|.||+...-...+.    +.+  .              .....|..|....  ....|+.+.+||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            55666655 57889998764322110    000  0              0112244444333  345788999999999


Q ss_pred             EEEeecCC--------ce-------eEEEEEeecCCcCEEEEEEc--CCCcEEEEeeCCCeEEEEeccccccccccccCC
Q 016982          124 ICYYEQEN--------NW-------WVSKLIRKRHDSSVTSVAWH--PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEG  186 (379)
Q Consensus       124 i~~~~~~~--------~~-------~~~~~~~~~~~~~v~~~~~~--p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  186 (379)
                      +|..+.--        ..       .+...+.......+++++++  ...+++|+++....|.||-....     ..+..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~-----~~r~~  202 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV-----DERFY  202 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc-----ccccc
Confidence            99763210        00       00011112345578999998  77789999988889999865211     00000


Q ss_pred             CccCCcccceEEEeecCCcceEEEEECCCC---C---EEEEEcCCCeEEEEEC
Q 016982          187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSG---N---TLAYVGHNSMIYFVDD  233 (379)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~~~~~d~~i~v~d~  233 (379)
                            ...   .. .+...|.+++|-++.   .   .|++++-.|.+.+|++
T Consensus       203 ------~~~---s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  203 ------HVP---SH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ------ccc---cc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence                  000   11 134558888887743   2   7888889999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.49  E-value=2.2  Score=34.68  Aligned_cols=184  Identities=11%  Similarity=0.101  Sum_probs=103.2

Q ss_pred             cceeEEEeCCCCcEEEEEecCC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           11 QCITCHAWSPDHAMVAFCPNNN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      .-...+.|..+|.++-+.+.-|  .|+.+|+.+++......+... ----.+....+ +...-.-.++...+||..+-+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETT-EEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEECC-EEEEEEecCCeEEEEccccceE
Confidence            3445677766777777776655  788999998865445555432 11123444422 2333345788999999998887


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecCC---cCEEEEEEcCCCcEEEEeeC
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRHD---SSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~l~~~~~  164 (379)
                      +..+..   .+.=+.++  .+++.|+.......++++|..+-+   ..+.+. ....   ..++.+.|. +|...|-.-.
T Consensus       123 ~~~~~y---~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~---~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  123 IGTFPY---PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK---EVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             EEEEE----SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S---EEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred             EEEEec---CCcceEEE--cCCCEEEEECCccceEEECCcccc---eEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence            776654   34456666  457777777667778887766544   233331 1111   245556665 5666665555


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeec---------------CCcceEEEEECCCCCEEEEEc
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL---------------SFSWAFGVKWSPSGNTLAYVG  223 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~sp~~~~l~~~~  223 (379)
                      ...|...|.                  .+++.+..+..               ...-.+.+|++|....|...+
T Consensus       194 td~I~~Idp------------------~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  194 TDRIVRIDP------------------ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             SSEEEEEET------------------TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeC------------------CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            666666664                  44554443311               123478999999766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.47  E-value=1.9  Score=33.99  Aligned_cols=94  Identities=11%  Similarity=0.091  Sum_probs=59.3

Q ss_pred             eEEEEEcCCCCEEE-EEeCCCeEEEEe--ccCCceeee---EEeec----CCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982           57 VSGIDWSVRSNRIV-TVSHDRNSYVWN--QEGSEWVPT---LVILR----LNRAALCVQWSPKENKFAVGSGAKTVCICY  126 (379)
Q Consensus        57 v~~~~~~~~~~~l~-~~~~d~~i~vw~--~~~~~~~~~---~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~  126 (379)
                      -+.++|+.+.+.+. +-+.+-.|.-||  ..++.....   +.+..    .....-.++...+|++.+++-..++|...|
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence            35789988776654 445566776677  555532211   11111    111223455566788888888888999999


Q ss_pred             eecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982          127 YEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      ..+++   +...+ .-....+++++|--
T Consensus       240 p~tGK---~L~ei-klPt~qitsccFgG  263 (310)
T KOG4499|consen  240 PTTGK---ILLEI-KLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCc---EEEEE-EcCCCceEEEEecC
Confidence            98888   45555 44578899999953

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.37  E-value=4.9  Score=38.31  Aligned_cols=93  Identities=19%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe--------ecCCcceEEEEECCC-
Q 016982          145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--------DLSFSWAFGVKWSPS-  215 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~sp~-  215 (379)
                      -.|..+.++|+|++++..+..| |.|..+-     .|........+.+..-..+++        ......|..+.|+|. 
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP-----~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELP-----RRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS  158 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEec-----cccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence            4688899999999999888765 4454441     000000000000000001111        123457899999995 


Q ss_pred             --CCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          216 --GNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       216 --~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                        +..|+.-..|+.+++||+.......+.+
T Consensus       159 ~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~  188 (717)
T PF10168_consen  159 ESDSHLVVLTSDNTLRLYDISDPQHPWQVL  188 (717)
T ss_pred             CCCCeEEEEecCCEEEEEecCCCCCCeEEE
Confidence              5788888899999999997655443433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.21  E-value=4.5  Score=37.23  Aligned_cols=147  Identities=12%  Similarity=0.097  Sum_probs=78.1

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEec--cCCC--ceEE-EEEcCCCCEEEEEe------CCCeEEEEeccCCceeee
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQ--KHDQ--IVSG-IDWSVRSNRIVTVS------HDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~~--~v~~-~~~~~~~~~l~~~~------~d~~i~vw~~~~~~~~~~   91 (379)
                      ..++.++.++.+.-+|..+++  .+....  .+..  .+.+ .... ++ .++.+.      .+|.|.-+|.++++.+-.
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk--~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGK--VVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCC--EEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            456677788999999998883  433322  1111  1111 1111 33 455543      267899999998875444


Q ss_pred             EEeecCC-----------------------------Cce-eEEEECCCCCEEEEEeCC-----C-----------eEEEE
Q 016982           92 LVILRLN-----------------------------RAA-LCVQWSPKENKFAVGSGA-----K-----------TVCIC  125 (379)
Q Consensus        92 ~~~~~~~-----------------------------~~v-~~~~~~~~~~~l~~~~~d-----~-----------~v~i~  125 (379)
                      +......                             ..+ ..+++.|...++..+..+     +           +|.-.
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl  276 (527)
T TIGR03075       197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR  276 (527)
T ss_pred             ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence            3222111                             011 134566655666665522     1           45556


Q ss_pred             EeecCCceeEEEEEeecCCc-------CEEEEEEcCCCc---EEEEeeCCCeEEEEeccc
Q 016982          126 YYEQENNWWVSKLIRKRHDS-------SVTSVAWHPNNV---FLATTSTDGKCRVFSTFI  175 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~p~~~---~l~~~~~d~~i~v~d~~~  175 (379)
                      |+++++..+..+..  .|..       ...-+....+|+   .++.+..+|.+.+.|-..
T Consensus       277 d~~TG~~~W~~Q~~--~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t  334 (527)
T TIGR03075       277 DPDTGKIKWHYQTT--PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN  334 (527)
T ss_pred             ccccCCEEEeeeCC--CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence            77777643332222  2211       111222223564   777899999999999643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PLN02193 nitrile-specifier protein

Probab=94.13  E-value=4.3  Score=36.77  Aligned_cols=140  Identities=11%  Similarity=0.072  Sum_probs=69.3

Q ss_pred             CCcEEEEEecC-----CeEEEEEecCCceEEEEEecc--CCCceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCce
Q 016982           21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQK--HDQIVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSEW   88 (379)
Q Consensus        21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~   88 (379)
                      ++.+.+.|+.+     ..+..||+.+.+|..+..+..  ....-.+++. -+++..+.|+.+     ..+..||+.+.++
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45666777654     368899999887777655421  1111122222 245556666644     3477888888776


Q ss_pred             eeeEEee---cCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEee-cCCcCEEEEEEcCCCcEEE
Q 016982           89 VPTLVIL---RLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRK-RHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        89 ~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~  160 (379)
                      ...-...   ........+.  -+++.++.++.+    ..+.+||+.+.. |........ .......+++ .-++++++
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~-~~~~~iyv  382 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASA-AVGKHIVI  382 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEE-EECCEEEE
Confidence            4332100   0011111122  256777777654    357778776654 322221100 1111111222 22567888


Q ss_pred             EeeCC
Q 016982          161 TTSTD  165 (379)
Q Consensus       161 ~~~~d  165 (379)
                      .|+..
T Consensus       383 ~GG~~  387 (470)
T PLN02193        383 FGGEI  387 (470)
T ss_pred             ECCcc
Confidence            88753

>PRK10115 protease 2; Provisional

Probab=94.08  E-value=5.7  Score=37.94  Aligned_cols=112  Identities=11%  Similarity=0.133  Sum_probs=63.9

Q ss_pred             ceEEEEEcCCCCEEEEEeC-C----CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC------CeEEE
Q 016982           56 IVSGIDWSVRSNRIVTVSH-D----RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA------KTVCI  124 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~-d----~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i  124 (379)
                      .+..+.|+|++++|+.+.. +    -.|++.|+.++..+...  .  ...-..++|.+|++.|+....+      ..|+.
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--i--~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--L--DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--c--cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            4677889999998876532 2    24888999887632221  1  1112569999999877776543      24566


Q ss_pred             EEeecCCceeEEEEEeecCCcCEE-EEEEcCCCcEEEEeeC---CCeEEEEec
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVT-SVAWHPNNVFLATTST---DGKCRVFST  173 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~---d~~i~v~d~  173 (379)
                      +++.++... ....+ ........ .+..+.++++++..+.   ++.+.+++.
T Consensus       204 h~lgt~~~~-d~lv~-~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        204 HTIGTPASQ-DELVY-EEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EECCCChhH-CeEEE-eeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            666665211 11222 22222233 3333447776654433   456888874

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.86  E-value=2.2  Score=37.77  Aligned_cols=61  Identities=8%  Similarity=0.024  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      ...+++.++..|.|++||.-.-. ....+++-+..|..+..+.+|+++.+.....+.+-+..
T Consensus       572 esGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            45589999999999999944322 22455666788999999999999987777777776654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.79  E-value=1.7  Score=30.95  Aligned_cols=113  Identities=10%  Similarity=0.100  Sum_probs=68.1

Q ss_pred             eEEEeCCCCcEEEEEecCCeEEEEEecCCc------eEEEEEeccCCCceEEEEEcC---C--CCEEEEEeCCCeEEEEe
Q 016982           14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEK------WEKLHVLQKHDQIVSGIDWSV---R--SNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~------~~~~~~~~~~~~~v~~~~~~~---~--~~~l~~~~~d~~i~vw~   82 (379)
                      ..-.|......|++++.-|+|.|++.....      ...++.|. -...|++++-.+   +  ...|+.|+. ..+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            344676666788888899999999876431      12334443 345677776443   2  356777665 5799999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECC---CCCEEEEEeCCCeEEEEEeecCC
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSP---KENKFAVGSGAKTVCICYYEQEN  131 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~v~i~~~~~~~  131 (379)
                      +....-   +....-...|.++.+-.   ...-++..+.+..|.-||.+..+
T Consensus        80 V~~N~d---~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   80 VENNSD---LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             cccCch---hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            988752   22234456777777633   12234444445666666655443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.68  E-value=0.63  Score=40.31  Aligned_cols=162  Identities=12%  Similarity=-0.022  Sum_probs=89.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCC----cee-EEEECCCCCEEEEEeCCCeEEEE-Ee
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNR----AAL-CVQWSPKENKFAVGSGAKTVCIC-YY  127 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~d~~v~i~-~~  127 (379)
                      ...|..+-..|||+.+..-+. .++.++++.+.............+    .|+ .+..-.-|.-+.++..||.|.-| |.
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence            345677888999998877655 678888887664322211111111    122 12222245668888889988877 44


Q ss_pred             ecCCceeEEEEEe--ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982          128 EQENNWWVSKLIR--KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS  205 (379)
Q Consensus       128 ~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
                      +..... -...++  .-...++..+.-..+.+-+++-+.+|++.++..                   +.+...-++..-.
T Consensus       299 r~~~~p-~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~s-------------------t~~~~lL~~~~~~  358 (733)
T COG4590         299 RRDGQP-HLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYS-------------------TSEKLLLFERAYQ  358 (733)
T ss_pred             ecCCCC-cceeeeccccCcccceeeccccccceEEEEcCCCceeeeec-------------------ccCcceehhhhhc
Confidence            443310 111110  111122322222222356777777888887752                   2222222222223


Q ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          206 WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       206 ~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      .+.-+++||.+.+|++- ..|.++++.+.+..
T Consensus       359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~  389 (733)
T COG4590         359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENRN  389 (733)
T ss_pred             CcceeeeCcccchheee-cCCceEEEEecCCC
Confidence            46778999999999864 45788998877654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.59  E-value=4.2  Score=34.82  Aligned_cols=108  Identities=9%  Similarity=0.135  Sum_probs=56.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe-----ecCCCceeEEEECCC----CCEEEEEeCC------C-
Q 016982           57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI-----LRLNRAALCVQWSPK----ENKFAVGSGA------K-  120 (379)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~----~~~l~~~~~d------~-  120 (379)
                      ..+|+|.|+|+.+++ ...|.|++++ ..+.....+..     .........++++|+    +.+.++.+..      . 
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            478999999877665 6689999999 44443122111     123456789999994    3333333311      1 


Q ss_pred             -eEEEEEeecCC-c----eeEEEEEee--cCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982          121 -TVCICYYEQEN-N----WWVSKLIRK--RHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus       121 -~v~i~~~~~~~-~----~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                       .|.-|.+.... .    ..+...+..  .....-..+.|.|||.++++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence             23334443331 1    111112211  1234456799999997777665433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.58  E-value=3.3  Score=33.59  Aligned_cols=228  Identities=9%  Similarity=-0.067  Sum_probs=129.9

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      .....++-.|||..-.++...+.|--.|..+++  ....--+....-..+..-|||..-++-+.. -|.-.|-++.+...
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGe--v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~  138 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGE--VETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR  138 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCc--eEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence            455677888888888888777777777888774  222222333445678888998776664433 45555655554222


Q ss_pred             eEEe--ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           91 TLVI--LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        91 ~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                       +.+  ...........|.+.|++-+++.. |.---.|-...    ..+.+.......-+.|+..|+|..-++.-.+..|
T Consensus       139 -f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~----~i~vfpaPqG~gpyGi~atpdGsvwyaslagnai  212 (353)
T COG4257         139 -FPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN----VISVFPAPQGGGPYGICATPDGSVWYASLAGNAI  212 (353)
T ss_pred             -eecccccCCCcccceeeCCCccEEEeecc-ccceecCcccC----ceeeeccCCCCCCcceEECCCCcEEEEeccccce
Confidence             211  122356778889999998888763 21111111111    2333323334455778899999877776677777


Q ss_pred             EEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL  248 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  248 (379)
                      -..|....                ..+.+..-+........+--+|.|+.-++....+.+.-||.....-....+.+.+.
T Consensus       213 aridp~~~----------------~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~a  276 (353)
T COG4257         213 ARIDPFAG----------------HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKA  276 (353)
T ss_pred             EEcccccC----------------CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCC
Confidence            77775211                01111111111222345555778888888777888888886654322233344444


Q ss_pred             CeeeEEEecCCcEEE
Q 016982          249 PLRDVLFVSEKMVIG  263 (379)
Q Consensus       249 ~i~~~~~s~~~~~l~  263 (379)
                      .-.++.....++.-.
T Consensus       277 rpys~rVD~~grVW~  291 (353)
T COG4257         277 RPYSMRVDRHGRVWL  291 (353)
T ss_pred             CcceeeeccCCcEEe
Confidence            455555555555443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.57  E-value=4.2  Score=34.75  Aligned_cols=163  Identities=12%  Similarity=0.119  Sum_probs=93.4

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCe------EEEEEecCC-----ceEE--EEEeccCCC--------ceEEEEEcCCCCE
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNE------VHIYKLIQE-----KWEK--LHVLQKHDQ--------IVSGIDWSVRSNR   68 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~------i~i~~~~~~-----~~~~--~~~~~~~~~--------~v~~~~~~~~~~~   68 (379)
                      -+.+..+.+.|++..+++-+.+|.      ++.+++...     ....  ...+..-.+        ..-+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            357889999965555655667777      666665541     1111  111222111        2347888778888


Q ss_pred             EEEEeCC------CeEEEEeccCCceeeeEE-------------eecCCCceeEEEECCCCCEEEEEeC-----CC----
Q 016982           69 IVTVSHD------RNSYVWNQEGSEWVPTLV-------------ILRLNRAALCVQWSPKENKFAVGSG-----AK----  120 (379)
Q Consensus        69 l~~~~~d------~~i~vw~~~~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~-----d~----  120 (379)
                      +++.-.+      ..|..++.. ++....+.             ....+....+++++|+|+.|+++.+     |+    
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776666      678888876 44333321             1123567889999999997666543     22    


Q ss_pred             -----eEEEEEeecCCce-eEEE-EEe-ec-----CCcCEEEEEEcCCCcEEEEee-----CCCeEEEEec
Q 016982          121 -----TVCICYYEQENNW-WVSK-LIR-KR-----HDSSVTSVAWHPNNVFLATTS-----TDGKCRVFST  173 (379)
Q Consensus       121 -----~v~i~~~~~~~~~-~~~~-~~~-~~-----~~~~v~~~~~~p~~~~l~~~~-----~d~~i~v~d~  173 (379)
                           .++++.++..... .... .+. ..     ....+..+.+.+++++|+.-=     ....++|+.+
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence                 1566655543210 0111 111 11     356788999999998666421     2445667665

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.49  E-value=0.95  Score=35.97  Aligned_cols=79  Identities=13%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEE-----Eec-------cCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLH-----VLQ-------KHDQIVSGIDWSVRSNRIVTVSHDRNS   78 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (379)
                      +++..+.  .++++|++-+.+|.+++||+.+.+.....     .+.       .....|..+.++.+|.-|++-+ +|..
T Consensus        13 s~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~   89 (219)
T PF07569_consen   13 SPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS   89 (219)
T ss_pred             CceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence            3444444  46788988899999999999986311100     111       2446788888888887777655 4778


Q ss_pred             EEEeccCCceeeeE
Q 016982           79 YVWNQEGSEWVPTL   92 (379)
Q Consensus        79 ~vw~~~~~~~~~~~   92 (379)
                      +.|+..-+.+....
T Consensus        90 y~y~~~L~~W~~vs  103 (219)
T PF07569_consen   90 YSYSPDLGCWIRVS  103 (219)
T ss_pred             EEeccccceeEEec
Confidence            88988777665543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.43  E-value=1.2  Score=38.95  Aligned_cols=82  Identities=10%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEc---CC-----------------C
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS---VR-----------------S   66 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-----------------~   66 (379)
                      ......+.+++.+|++++.|+...-|.|.++|+.++  ..++.+++..+.  .+.|-   ..                 .
T Consensus       304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~--~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG--IVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC--hhhhhhccCccc--eEEEEEeecccccccccccccCCCCcce
Confidence            344567899999999999998877899999999887  555556554432  11111   00                 1


Q ss_pred             CE-EEEEeCCCeEEEEeccCCceeeeE
Q 016982           67 NR-IVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        67 ~~-l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      .+ ++-+-.-|.|.||.++++..+..+
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEE
Confidence            12 344556788999999888754444

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.37  E-value=3.5  Score=36.58  Aligned_cols=145  Identities=14%  Similarity=0.108  Sum_probs=80.1

Q ss_pred             CCCEEEE-EeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC-------EEEEEeCCCeEEEEEeecCCceeEE
Q 016982           65 RSNRIVT-VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN-------KFAVGSGAKTVCICYYEQENNWWVS  136 (379)
Q Consensus        65 ~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~i~~~~~~~~~~~~  136 (379)
                      +..+|+. +.....++-.|++.|+.+....+   ...+ -+.|.|+.+       .-++|-.+..|.-.|.+...+.-..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~---~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL---KDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeec---CCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence            4444443 44445677778888886666543   2333 567777532       2344444555544454443321111


Q ss_pred             EEEe-ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE-EEeecCCcceEEEEECC
Q 016982          137 KLIR-KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAFGVKWSP  214 (379)
Q Consensus       137 ~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp  214 (379)
                      .... ........+..-. .+-+++.++..|-|++||-                   .+... ..+.+-...|..+..+.
T Consensus       554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDR-------------------ig~rAKtalP~lG~aIk~idvta  613 (776)
T COG5167         554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDR-------------------IGKRAKTALPGLGDAIKHIDVTA  613 (776)
T ss_pred             eeehhccccccccccccc-cCceEEEecCCCceeeehh-------------------hcchhhhcCcccccceeeeEeec
Confidence            1110 1111222222222 3458999999999999983                   22222 22344466788899999


Q ss_pred             CCCEEEEEcCCCeEEEEECC
Q 016982          215 SGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~  234 (379)
                      +|+++++.+ ...+.+.|++
T Consensus       614 ~Gk~ilaTC-k~yllL~d~~  632 (776)
T COG5167         614 NGKHILATC-KNYLLLTDVP  632 (776)
T ss_pred             CCcEEEEee-cceEEEEecc
Confidence            999887665 3456666653

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.23  E-value=2.3  Score=36.31  Aligned_cols=69  Identities=14%  Similarity=0.260  Sum_probs=41.6

Q ss_pred             CCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC----eEEEEeccCCceee
Q 016982           21 DHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR----NSYVWNQEGSEWVP   90 (379)
Q Consensus        21 ~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~vw~~~~~~~~~   90 (379)
                      ++++.+.|+.     ...+..||+.+.+|..+..+.... .........+++..+.|+.++    .+.+||..+.++..
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~  200 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK  200 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence            4566666664     246888999988887766544221 112222233466667776553    35688988887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.02  E-value=0.15  Score=47.77  Aligned_cols=120  Identities=13%  Similarity=0.047  Sum_probs=66.4

Q ss_pred             ecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC---CC
Q 016982          141 KRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP---SG  216 (379)
Q Consensus       141 ~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~  216 (379)
                      ++..+.+-.+.|.... ..+.  -.-|.+.|||+..-.-++           ...-.+.........+.-+.|.|   +.
T Consensus       129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~i-----------q~~l~v~~~~p~gs~~~~V~wcp~~~~~  195 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEI-----------QPQLEVTPITPYGSDPQLVSWCPIAVNK  195 (1283)
T ss_pred             hcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccc-----------ccceEEeecCcCCCCcceeeeccccccc
Confidence            6677788888885422 1121  234678899974211111           01111222222233455566665   56


Q ss_pred             CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEE-----------ecCCcEEE-EEeCCCeEEEEe
Q 016982          217 NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLF-----------VSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       217 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~-----------s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      .++..+-.++.+++........  ..+..|...+..++|           ||||..++ ...||.+..|..
T Consensus       196 ~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  196 VYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             ceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            6777777888888877655432  334446655555444           67777666 566776666653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.98  E-value=2.8  Score=41.58  Aligned_cols=169  Identities=15%  Similarity=0.106  Sum_probs=89.9

Q ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEE--------CCCCCEEEEEeCCCeEEEEEee
Q 016982           58 SGIDWSVRS-NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQW--------SPKENKFAVGSGAKTVCICYYE  128 (379)
Q Consensus        58 ~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~d~~v~i~~~~  128 (379)
                      ..+-+.|.= +.-+  +.|+.+.+|+.+++.-...+  .+....|..+..        .|.=+++++...--.|.++-+.
T Consensus        82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~--d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~  157 (1311)
T KOG1900|consen   82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEY--DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS  157 (1311)
T ss_pred             eeeccchhhcceEE--EeCCeEEEEEcCCCCccccc--cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence            344555543 3233  45788999999986533333  333344444433        2222344444444556665443


Q ss_pred             cCCceeEEEE----Ee-ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccccccc---------CCCccCCccc
Q 016982          129 QENNWWVSKL----IR-KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKK---------EGTSSDTKFG  194 (379)
Q Consensus       129 ~~~~~~~~~~----~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------~~~~~~~~~~  194 (379)
                      ..+.......    +. ......|.|+....+|+.+.+|- ||  .+|.+.-+..+-....         .......++ 
T Consensus       158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-  233 (1311)
T KOG1900|consen  158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-  233 (1311)
T ss_pred             eccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh-
Confidence            3221000111    11 22355788999888888777664 55  4565421111110000         000000011 


Q ss_pred             ceEEEee-cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          195 EQILQLD-LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       195 ~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                        +..+. .+..+|..++.......+.+-+..+.|.+||+...
T Consensus       234 --~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  234 --LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             --hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence              22223 45668999999998889999999999999998763

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.86  E-value=5.5  Score=34.06  Aligned_cols=162  Identities=14%  Similarity=0.134  Sum_probs=81.8

Q ss_pred             CceeEEEECCCCCEEEEEeCCCe------EEEEEeecCC----ceeEEEEEe-ecCCc--------CEEEEEEcCCCcEE
Q 016982           99 RAALCVQWSPKENKFAVGSGAKT------VCICYYEQEN----NWWVSKLIR-KRHDS--------SVTSVAWHPNNVFL  159 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~------v~i~~~~~~~----~~~~~~~~~-~~~~~--------~v~~~~~~p~~~~l  159 (379)
                      +....+.+.+++..+++.+.+|.      +..+++....    ......... ....+        ...++++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            56788888866666666677776      5555554411    100111110 11111        34578887788877


Q ss_pred             EEeeCC------CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC-----CC--
Q 016982          160 ATTSTD------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH-----NS--  226 (379)
Q Consensus       160 ~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-----d~--  226 (379)
                      ++.-.+      ..|..++....-.....-+...... ..+.   .-...+...-+|+++|+|+.|+++.+     |+  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~-~~~~---~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPD-ANGT---SGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCCCcccceEccccccccc-cCcc---ccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            776666      6777777531110000000000000 0000   11123556889999999996665532     22  


Q ss_pred             e-------EEE--EECCCCCc----eeeeeee-----ecCCeeeEEEecCCcEEEE
Q 016982          227 M-------IYF--VDDVGPSP----LAQNVAF-----RDLPLRDVLFVSEKMVIGV  264 (379)
Q Consensus       227 ~-------i~v--~d~~~~~~----~~~~~~~-----~~~~i~~~~~s~~~~~l~~  264 (379)
                      .       +++  ||..+...    ....+..     ....+..+.+-+++++|+-
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            1       444  45544221    1112221     2456888999999998873

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.76  E-value=1.6  Score=33.18  Aligned_cols=30  Identities=13%  Similarity=0.294  Sum_probs=24.9

Q ss_pred             ceEEEEEcCCC------CEEEEEeCCCeEEEEeccC
Q 016982           56 IVSGIDWSVRS------NRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus        56 ~v~~~~~~~~~------~~l~~~~~d~~i~vw~~~~   85 (379)
                      .|..++|||.|      ..|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999965      3688889999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.68  E-value=7.1  Score=34.88  Aligned_cols=56  Identities=14%  Similarity=0.026  Sum_probs=37.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE-----eecCCCceeEEEECCCC
Q 016982           55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV-----ILRLNRAALCVQWSPKE  110 (379)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~  110 (379)
                      ..-..|+|.|+|+.|++--..|.|++++..++.......     ..........|+++|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            345799999999877765546999999865543211111     11135678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.66  E-value=6.8  Score=34.59  Aligned_cols=147  Identities=15%  Similarity=0.191  Sum_probs=86.2

Q ss_pred             CCEEEEEeCCCeEEEEeccCCcee--eeEEeecCCCceeEEEECC-----CCCEEEEEeCCCeEEEEEeecCCce-----
Q 016982           66 SNRIVTVSHDRNSYVWNQEGSEWV--PTLVILRLNRAALCVQWSP-----KENKFAVGSGAKTVCICYYEQENNW-----  133 (379)
Q Consensus        66 ~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~~~~~~~~~-----  133 (379)
                      ...|++|+..|.++||+.......  ..+.....+.+|..+..-+     +...||+ -.-..+.+|.+......     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            368999999999999998665422  1222234567888877643     2334555 44677888887443211     


Q ss_pred             -eEEEEEeecC--CcCEEEEEEcCC-----CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982          134 -WVSKLIRKRH--DSSVTSVAWHPN-----NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS  205 (379)
Q Consensus       134 -~~~~~~~~~~--~~~v~~~~~~p~-----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
                       .....+ ..|  ......++.-|-     ..++.+-+.||.+.+|+-.                   .-....+-...-
T Consensus       116 ~~~L~~~-yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe-------------------~~~f~~~lp~~l  175 (418)
T PF14727_consen  116 QYQLELI-YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE-------------------SFAFSRFLPDFL  175 (418)
T ss_pred             EEEEEEE-EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC-------------------cEEEEEEcCCCC
Confidence             111222 222  223333444332     2577888999999999731                   111111111111


Q ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          206 WAFGVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       206 ~v~~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                      -..-+.|.|.-..+++++.+..+..|..
T Consensus       176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  176 LPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CCcCeEEeecCCEEEEecCceeEEEecH
Confidence            1234678888888999998889998863

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.58  E-value=4.8  Score=32.72  Aligned_cols=205  Identities=9%  Similarity=-0.035  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE
Q 016982           57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS  136 (379)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~  136 (379)
                      -..++-+|||..-+++...+.|--.|-.+++....  ..+.......+..-|||..-++-+.. .|.=.|-++.+    .
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y--pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e----v  136 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY--PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE----V  136 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEE--ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc----e
Confidence            35678889998888888888888888888874332  24555667888889998876664433 33333333333    1


Q ss_pred             EEEe---ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-CcceEEEEE
Q 016982          137 KLIR---KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-FSWAFGVKW  212 (379)
Q Consensus       137 ~~~~---~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~  212 (379)
                      +.+.   ...........|.+.|++-.++... .---.|                   .....+..+... ......++.
T Consensus       137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLd-------------------Pa~~~i~vfpaPqG~gpyGi~a  196 (353)
T COG4257         137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLD-------------------PARNVISVFPAPQGGGPYGICA  196 (353)
T ss_pred             EEeecccccCCCcccceeeCCCccEEEeeccc-cceecC-------------------cccCceeeeccCCCCCCcceEE
Confidence            1111   2334567788899999888877531 110111                   112223333222 234577888


Q ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCCcEEEE-EeCCCeEEEEecCCCcEEEEEEecc
Q 016982          213 SPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEKMVIGV-GFDCNPMVFAADETGIWTFIKFLDE  289 (379)
Q Consensus       213 sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~-~~d~~~~i~~~~~~~~~~~~~~~~~  289 (379)
                      .|+|..-++.-.+..|-..|.......+.... ........+--+|.|+.-++ ...+.+..|+.... .|........
T Consensus       197 tpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~-sW~eypLPgs  274 (353)
T COG4257         197 TPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT-SWIEYPLPGS  274 (353)
T ss_pred             CCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc-cceeeeCCCC
Confidence            99999877766777777777666532211111 11223344555567776553 33445555554333 3666554443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.51  E-value=0.014  Score=50.26  Aligned_cols=145  Identities=12%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEE-eCCCeEEEEEeecCCceeEE
Q 016982           58 SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWWVS  136 (379)
Q Consensus        58 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~  136 (379)
                      ....|-|.+.-++.++.+..+..||-....   ... ...++....++|..++..+++. -..+.+.+||+++...    
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~---~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt----  109 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT----  109 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcce---ecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----
Confidence            455678877668888888888888855432   111 2345677888898888766654 4578999999987752    


Q ss_pred             EEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC
Q 016982          137 KLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG  216 (379)
Q Consensus       137 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  216 (379)
                      ..+..+....-.-+.|++....++.+...+.+.|++.                  .+.+.+...-.|...++++++.+.+
T Consensus       110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynh------------------gtsR~iiv~Gkh~RRgtq~av~lEd  171 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNH------------------GTSRRIIVMGKHQRRGTQIAVTLED  171 (615)
T ss_pred             HHHhccCcchHHHHhhccCCccccccccccceEEEec------------------cchhhhhhhcccccceeEEEecccc
Confidence            2221222222333789998888999999999999985                  3333333333367778999999876


Q ss_pred             CEEEEEcCCCeEE
Q 016982          217 NTLAYVGHNSMIY  229 (379)
Q Consensus       217 ~~l~~~~~d~~i~  229 (379)
                      .. +.++.|..+.
T Consensus       172 ~v-il~dcd~~L~  183 (615)
T KOG2247|consen  172 YV-ILCDCDNTLS  183 (615)
T ss_pred             ee-eecCcHHHHH
Confidence            54 4445554433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.40  E-value=6.3  Score=33.63  Aligned_cols=105  Identities=10%  Similarity=0.086  Sum_probs=48.5

Q ss_pred             CCCEEEEEeCC-----CeEEEEeccCCcee---eeEEeecCCCceeEEEECCCCCEEEEEeC-----CCeEEEEEeecCC
Q 016982           65 RSNRIVTVSHD-----RNSYVWNQEGSEWV---PTLVILRLNRAALCVQWSPKENKFAVGSG-----AKTVCICYYEQEN  131 (379)
Q Consensus        65 ~~~~l~~~~~d-----~~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~~~  131 (379)
                      ++..++.|+.+     ..+..+|+.+.++.   ......+....-.+++. -++++.+.|+.     ...+..||+.+..
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45556666654     34667787776641   11110111111112222 24666666664     2346667766543


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe----EEEEec
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK----CRVFST  173 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~----i~v~d~  173 (379)
                       |.....+ .. .......+...++++++.|+.++.    +.+||+
T Consensus       151 -W~~~~~~-p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~  193 (323)
T TIGR03548       151 -WFELPDF-PG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSP  193 (323)
T ss_pred             -eeECCCC-CC-CCCCcceEEEECCEEEEEcCCCCccccceEEEec
Confidence             3332222 11 111112222336778888876543    456765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.28  E-value=3  Score=41.39  Aligned_cols=162  Identities=12%  Similarity=0.089  Sum_probs=87.4

Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE--------ECCCCCEEEEEcCCCeEEEEECC
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK--------WSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      +.|+.+.+|+.                  .++.....+.+-...|..+.        |-|.=++++.-+.--.|.++-+.
T Consensus        96 TiDn~L~lWny------------------~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~  157 (1311)
T KOG1900|consen   96 TIDNNLFLWNY------------------ESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS  157 (1311)
T ss_pred             EeCCeEEEEEc------------------CCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence            45888999997                  33333444444344444432        22333444444445556666332


Q ss_pred             C----CCc--ee--eeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccc
Q 016982          235 G----PSP--LA--QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEA  306 (379)
Q Consensus       235 ~----~~~--~~--~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (379)
                      -    ...  ..  ..+...+..|.++....+|+.+.+|.|+.++-+.+.....|--.+.-........    -..+.+.
T Consensus       158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~----ls~lvPs  233 (1311)
T KOG1900|consen  158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSV----LSSLVPS  233 (1311)
T ss_pred             eccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhH----HHHhhhh
Confidence            1    110  00  1122235568888888899999999999776555544444543221100000000    0000011


Q ss_pred             cceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          307 FGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      +..                   ....|.++|..++ .....    ..+.+=+.-|+|++|++..
T Consensus       234 ~~~-------------------~~~~~~dpI~qi~-ID~SR----~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  234 LLS-------------------VPGSSKDPIRQIT-IDNSR----NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhc-------------------CCCCCCCcceeeE-ecccc----ceeeeeccCceEEEEEccC
Confidence            111                   1136788999999 54433    6899999999999999976

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.17  E-value=1.2  Score=41.23  Aligned_cols=73  Identities=14%  Similarity=0.254  Sum_probs=45.0

Q ss_pred             CCCcEEEEEecCCeEEEEEecC----C-ceEEEEEecc--------------------CCCceEEEEEcC----CCCEEE
Q 016982           20 PDHAMVAFCPNNNEVHIYKLIQ----E-KWEKLHVLQK--------------------HDQIVSGIDWSV----RSNRIV   70 (379)
Q Consensus        20 ~~~~~l~~~~~dg~i~i~~~~~----~-~~~~~~~~~~--------------------~~~~v~~~~~~~----~~~~l~   70 (379)
                      ++...|+++..||.+...+...    + .+... .+..                    ....+..+++++    +..+|+
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF  234 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence            4667788888999988888764    1 11111 1111                    123455666666    668999


Q ss_pred             EEeCCCeEEEEeccCCceeeeEE
Q 016982           71 TVSHDRNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        71 ~~~~d~~i~vw~~~~~~~~~~~~   93 (379)
                      +.+.|+++++||+.+++++....
T Consensus       235 tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  235 TLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEETTSEEEEEETTTTCEEEEEE
T ss_pred             EEeCCCeEEEEECCCCeEEEEec
Confidence            99999999999999999765553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.13  E-value=0.021  Score=49.28  Aligned_cols=136  Identities=15%  Similarity=0.262  Sum_probs=91.5

Q ss_pred             EEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeeEE
Q 016982           15 CHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~   93 (379)
                      ...|-|.+.-++.++.+..+..||-...   ....+. .++....++|.-++..+ +.+-..+.+.+||+.+... ..+.
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq---~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE  113 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQ---VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE  113 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcc---eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence            4567887777888888888999987653   322222 24456678888887654 4455678899999987532 1222


Q ss_pred             eecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           94 ILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      . +....-.-+.|++-...++.+...|.+.+++..+...   .... ..|...+.++++.+.+..+.
T Consensus       114 ~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~---iiv~-Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  114 S-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRR---IIVM-GKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             c-cCcchHHHHhhccCCccccccccccceEEEeccchhh---hhhh-cccccceeEEEecccceeee
Confidence            1 1122222378898888899998899999998877652   2222 33888999999998765443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.12  E-value=8.4  Score=34.40  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=22.3

Q ss_pred             cceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          335 NCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       335 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      ..|.+++ ..+..    +.|++...+|.|.+|++..
T Consensus       190 ~~I~~v~-~d~~r----~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVA-VDPSR----RLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEE-EETTT----TEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEE-ecCCc----CEEEEEeCCCcEEEEEEeC
Confidence            3488888 44433    7999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.87  E-value=12  Score=35.77  Aligned_cols=75  Identities=12%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             CCceeEEEECCCCCEEEEEeCCCeEEEEEeecC----------CceeEEEEEe-------ecCCcCEEEEEEcCC---Cc
Q 016982           98 NRAALCVQWSPKENKFAVGSGAKTVCICYYEQE----------NNWWVSKLIR-------KRHDSSVTSVAWHPN---NV  157 (379)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~----------~~~~~~~~~~-------~~~~~~v~~~~~~p~---~~  157 (379)
                      .-.|..+.++|+|..++..+..|. .|..+...          ......+.+.       ......|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            357889999999999999887654 44334221          1111122211       234567899999996   47


Q ss_pred             EEEEeeCCCeEEEEec
Q 016982          158 FLATTSTDGKCRVFST  173 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~  173 (379)
                      .|+.-+.|+.+++||+
T Consensus       163 ~l~vLtsdn~lR~y~~  178 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDI  178 (717)
T ss_pred             eEEEEecCCEEEEEec
Confidence            8999999999999998

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.85  E-value=5.1  Score=32.36  Aligned_cols=143  Identities=13%  Similarity=0.095  Sum_probs=74.4

Q ss_pred             EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-C--CeEEEEEeec---CCceeEEE-EEeecCCcCEEEE
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-A--KTVCICYYEQ---ENNWWVSK-LIRKRHDSSVTSV  150 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~v~i~~~~~---~~~~~~~~-~~~~~~~~~v~~~  150 (379)
                      -.+||+.+++..+..  .....-+.+-.+-+||+++.+|+. +  ..+++++...   ...|.... .+  .....-...
T Consensus        48 s~~yD~~tn~~rpl~--v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m--~~~RWYpT~  123 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLT--VQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM--QSGRWYPTA  123 (243)
T ss_pred             EEEEecCCCcEEecc--CCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc--cCCCccccc
Confidence            468999988754432  223334445567889999999876 2  3477776544   11111111 11  222333445


Q ss_pred             EEcCCCcEEEEeeCCCe-EEEEeccccccccccccCCCccCCcccceEEEe--ecCCcceEEEEECCCCCEEEEEcCCCe
Q 016982          151 AWHPNNVFLATTSTDGK-CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGNTLAYVGHNSM  227 (379)
Q Consensus       151 ~~~p~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~~  227 (379)
                      .--|||+.|+.|+.... ..+|.-..      .....     .....+...  ......-..+...|+|++++.+..+. 
T Consensus       124 ~~L~DG~vlIvGG~~~~t~E~~P~~~------~~~~~-----~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s-  191 (243)
T PF07250_consen  124 TTLPDGRVLIVGGSNNPTYEFWPPKG------PGPGP-----VTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS-  191 (243)
T ss_pred             eECCCCCEEEEeCcCCCcccccCCcc------CCCCc-----eeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc-
Confidence            55679999999887632 23332100      00000     000000000  01112234567789999999887654 


Q ss_pred             EEEEECCCCC
Q 016982          228 IYFVDDVGPS  237 (379)
Q Consensus       228 i~v~d~~~~~  237 (379)
                       .|||..+.+
T Consensus       192 -~i~d~~~n~  200 (243)
T PF07250_consen  192 -IIYDYKTNT  200 (243)
T ss_pred             -EEEeCCCCe
Confidence             567877664

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.48  E-value=1.1  Score=23.96  Aligned_cols=28  Identities=18%  Similarity=0.260  Sum_probs=18.6

Q ss_pred             CcceEEEEECCCCCEEEEEc-CC--CeEEEE
Q 016982          204 FSWAFGVKWSPSGNTLAYVG-HN--SMIYFV  231 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~-~d--~~i~v~  231 (379)
                      ...-....|||||+.|+.++ .+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            44567899999999988765 33  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.35  E-value=5.9  Score=39.46  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=28.8

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ   41 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~   41 (379)
                      +.......++|+|...++|.+..+|.|++|-...
T Consensus        33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCCCcceeeccccceEEEEEecccEEEecccc
Confidence            3456777899999999999999999999997654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.21  E-value=0.85  Score=24.41  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEec-C--CeEEEE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPN-N--NEVHIY   37 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~-d--g~i~i~   37 (379)
                      +......-....|||||+.|+..+. +  |...||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445667788999999998887765 3  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.97  E-value=5.7  Score=35.49  Aligned_cols=26  Identities=15%  Similarity=0.046  Sum_probs=20.4

Q ss_pred             ceeEEEECCCCCEEEEEeCCCeEEEE
Q 016982          100 AALCVQWSPKENKFAVGSGAKTVCIC  125 (379)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~d~~v~i~  125 (379)
                      .|..+..++.|..++..+.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            46778889999998888888866543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.51  E-value=12  Score=33.65  Aligned_cols=76  Identities=8%  Similarity=0.010  Sum_probs=49.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEe---------ccCCceeeeEE---------eecCCCceeEEEECCCC---CEEE
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWN---------QEGSEWVPTLV---------ILRLNRAALCVQWSPKE---NKFA  114 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~---------~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~---~~l~  114 (379)
                      .|..+..++.|..++-++.+|.+.++=         +++++..-...         .....-.+..++|+|+.   ..+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            466788899999888888888654432         12332111111         11122346788999975   5778


Q ss_pred             EEeCCCeEEEEEeecCC
Q 016982          115 VGSGAKTVCICYYEQEN  131 (379)
Q Consensus       115 ~~~~d~~v~i~~~~~~~  131 (379)
                      .-+.|..+++||+....
T Consensus       185 iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEecCcEEEEEecCCcc
Confidence            88889999999987654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.51  E-value=8.4  Score=31.42  Aligned_cols=153  Identities=10%  Similarity=0.092  Sum_probs=85.5

Q ss_pred             CceeEEEECCCCCEEEEEeCCC--eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982           99 RAALCVQWSPKENKFAVGSGAK--TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK  176 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~  176 (379)
                      .-...+.|..+|.++-+.+.-|  .|+.+|+.+++   ..+.......---..++.. +++.....-.++...+||.   
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~---~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~---  117 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK---VLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDP---  117 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS---EEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEET---
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc---EEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcc---
Confidence            3445677766787777777766  57888888876   2332212222223344544 3445555567899999996   


Q ss_pred             ccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee--c---CCee
Q 016982          177 GVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR--D---LPLR  251 (379)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~---~~i~  251 (379)
                                     .+.+.+.++... +.-+.++  .+++.|+.+.....++++|..+-+. ...+...  +   ..++
T Consensus       118 ---------------~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LN  178 (264)
T PF05096_consen  118 ---------------NTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLN  178 (264)
T ss_dssp             ---------------TTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EE
T ss_pred             ---------------ccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcE
Confidence                           566777777543 4456776  4577787777788999999776543 3443322  2   2355


Q ss_pred             eEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982          252 DVLFVSEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       252 ~~~~s~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      .+.|- +|.+.| .=....|...+...+
T Consensus       179 ELE~i-~G~IyANVW~td~I~~Idp~tG  205 (264)
T PF05096_consen  179 ELEYI-NGKIYANVWQTDRIVRIDPETG  205 (264)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTT-
T ss_pred             eEEEE-cCEEEEEeCCCCeEEEEeCCCC
Confidence            56665 576666 333444444444433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.15  E-value=19  Score=35.04  Aligned_cols=160  Identities=14%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             CcceeEEEeCC-CCcEEEEEecCCeEEEEEe---cCCceEEEEEeccCCCce------E----EEEEcCCCCEEEEEeCC
Q 016982           10 AQCITCHAWSP-DHAMVAFCPNNNEVHIYKL---IQEKWEKLHVLQKHDQIV------S----GIDWSVRSNRIVTVSHD   75 (379)
Q Consensus        10 ~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~~~~v------~----~~~~~~~~~~l~~~~~d   75 (379)
                      ..+...++|+| +.+.||+-...|...||++   .............+.+.|      .    .+.|.++.+.|+.++. 
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-


Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE----EEEE
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV----TSVA  151 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v----~~~~  151 (379)
                      ..+.++|+++......+........|.++.-+|...-.+..-....|...++..... .....+.-.|....    ..+.
T Consensus       224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~-~~~~llSwkH~~d~~D~tLrl~  302 (765)
T PF10214_consen  224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSE-KLTRLLSWKHFRDPEDPTLRLS  302 (765)
T ss_pred             CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCC-CeeeeeecccccCCCCCceEEE


Q ss_pred             EcCC-C---cEEEEeeCCCeEEEE
Q 016982          152 WHPN-N---VFLATTSTDGKCRVF  171 (379)
Q Consensus       152 ~~p~-~---~~l~~~~~d~~i~v~  171 (379)
                      .... +   -.++..-....+.+|
T Consensus       303 ~~~~~~~~~~~~lyS~~~~~v~v~  326 (765)
T PF10214_consen  303 VQKVGDTDFVVFLYSRLNPLVYVY  326 (765)
T ss_pred             EEEcCCCEEEEEEEcCCCCcEEEE

These proteins are found in fungi.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.05  E-value=7.9  Score=30.36  Aligned_cols=51  Identities=10%  Similarity=0.052  Sum_probs=36.7

Q ss_pred             CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC
Q 016982           67 NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG  118 (379)
Q Consensus        67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  118 (379)
                      +.|+.+.....|.+|++.+........ ...-+.|..+.++..|+++++--.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~-F~Tv~~V~~l~y~~~GDYlvTlE~   79 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCT-FSTVGRVLQLVYSEAGDYLVTLEE   79 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEE-EcchhheeEEEeccccceEEEEEe
Confidence            455444566789999999554444433 344589999999999999998643

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.43  E-value=11  Score=31.30  Aligned_cols=218  Identities=9%  Similarity=0.011  Sum_probs=112.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeccC------CceeeeEEeec-----CCCceeEEEECCCCC------------EE
Q 016982           57 VSGIDWSVRSNRIVTVSHDRNSYVWNQEG------SEWVPTLVILR-----LNRAALCVQWSPKEN------------KF  113 (379)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~------~~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l  113 (379)
                      -..|+++|.+.+-++....+...+||...      .+. ....+..     .....+.+.|+....            .+
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~-L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDP-LVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccc-eEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            46799999998888877778899999861      111 1122111     124567777775322            36


Q ss_pred             EEEeCCCeEEEEEeecCCce--eEEEEEeecCCc-CEEEEEEcCC--CcEEEE-eeCCCeEEEEeccccccccccc-cCC
Q 016982          114 AVGSGAKTVCICYYEQENNW--WVSKLIRKRHDS-SVTSVAWHPN--NVFLAT-TSTDGKCRVFSTFIKGVDIKEK-KEG  186 (379)
Q Consensus       114 ~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~~-~v~~~~~~p~--~~~l~~-~~~d~~i~v~d~~~~~~~~~~~-~~~  186 (379)
                      +.+++||+|.-|........  .....+...... ....+++...  +.+|.. --..++|.|||-.-....+... ..+
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            77889999999985433210  001112112222 3345555533  344444 3468899999852111110000 000


Q ss_pred             CccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee--ecCCeeeEEEec------C
Q 016982          187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF--RDLPLRDVLFVS------E  258 (379)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~------~  258 (379)
                      ..+..-..--++.+.+ .-.|+...-.++++.=+.+..-|.|-+||+...  +++.+..  .-...+.|+..|      .
T Consensus       184 ~iPagyAPFnIqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCcceEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChhhhCCCC
Confidence            0000000001111111 112333333444443344555688999997664  4455531  223456677765      4


Q ss_pred             CcEEEEE-eCCCeEEEEecCC
Q 016982          259 KMVIGVG-FDCNPMVFAADET  278 (379)
Q Consensus       259 ~~~l~~~-~d~~~~i~~~~~~  278 (379)
                      |.+|++- .|++|..|+....
T Consensus       261 g~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             CCeEEeecCCceeEEecCCCC
Confidence            6788743 4889999987654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13615 lipoprotein LpqB; Provisional

Probab=89.13  E-value=18  Score=33.37  Aligned_cols=162  Identities=9%  Similarity=0.006  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEE
Q 016982           58 SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK  137 (379)
Q Consensus        58 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~  137 (379)
                      .+++.++++..++....++.+.++......  ..+   ......+.-+|.++| .+-+.-.....++......... ...
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~--~~~---~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~-~~v  409 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDRDA--VLL---DTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG-HPV  409 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCCcc--eee---ccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCce-EEe
Confidence            788999999998888777878777665222  111   123456777888887 4555444334444443321111 111


Q ss_pred             EEeecCCcCEEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccCCcc-cceEEEeecCCcceEEEEEC
Q 016982          138 LIRKRHDSSVTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSDTKF-GEQILQLDLSFSWAFGVKWS  213 (379)
Q Consensus       138 ~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s  213 (379)
                      .....-...|..+..++||-.++.-..   .++|.+--+.      |....+    ... ... ..+......+.++.|.
T Consensus       410 ~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~------R~~~~P----~~L~~~p-~~l~~~l~~v~sl~W~  478 (557)
T PRK13615        410 AVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIV------RDGGVP----TSLTTTP-LELLASPGTPLDATWV  478 (557)
T ss_pred             eccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEE------eCCCcc----eEeeecc-EEcccCcCcceeeEEc
Confidence            111223457999999999977665432   4567665541      110000    000 111 1221123378999999


Q ss_pred             CCCCEEEEEc---CCCeEEEEECCCCC
Q 016982          214 PSGNTLAYVG---HNSMIYFVDDVGPS  237 (379)
Q Consensus       214 p~~~~l~~~~---~d~~i~v~d~~~~~  237 (379)
                      .++.+++.+.   .+..+++..+....
T Consensus       479 ~~~~laVl~~~~~~~~~v~~v~v~g~~  505 (557)
T PRK13615        479 DELDVATLTLAPDGERQVELHQVGGPS  505 (557)
T ss_pred             CCCEEEEEeccCCCCceEEEEECCCcc
Confidence            9998866652   34567777776543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.87  E-value=26  Score=35.18  Aligned_cols=32  Identities=13%  Similarity=0.192  Sum_probs=26.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      ....++|+|.-.+++.+...|.|+++-...-+
T Consensus        37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCcceeeccccceEEEEEecccEEEecccceE
Confidence            45678999999999999999999999765544

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=88.60  E-value=14  Score=35.12  Aligned_cols=30  Identities=17%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEe
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKL   39 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~   39 (379)
                      .+.|-+.+||.|.+.++....+..|.+++-
T Consensus       112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k  141 (1243)
T COG5290         112 SNGIVAASWSADEKTWCVVTSTREILLFDK  141 (1243)
T ss_pred             cCceEEEeeccCCceEEEEEcCceEEEEec
Confidence            678889999999997777777778888764

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.26  E-value=9.6  Score=29.01  Aligned_cols=35  Identities=6%  Similarity=0.111  Sum_probs=27.2

Q ss_pred             cceeeeeeecccC--CcccceEEEeecCceEEEEeCCC
Q 016982          335 NCINCIVPLREAG--SSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       335 ~~v~~~~~~~~~~--~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      ..|.+++ ++|.|  .....+||....+|.|.||.-..
T Consensus        86 ~~vv~~a-WSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAA-WSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEE-ECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            3788888 77755  23356999999999999998763

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=88.05  E-value=5.8  Score=26.20  Aligned_cols=48  Identities=6%  Similarity=-0.102  Sum_probs=31.3

Q ss_pred             CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEE
Q 016982          224 HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVF  273 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~  273 (379)
                      .+|.+.-||..+++.  ..+...-.-.+.+++++|+.++..+.-..-+|.
T Consensus        35 ~~GRll~ydp~t~~~--~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~   82 (89)
T PF03088_consen   35 PTGRLLRYDPSTKET--TVLLDGLYFPNGVALSPDESFVLVAETGRYRIL   82 (89)
T ss_dssp             --EEEEEEETTTTEE--EEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred             CCcCEEEEECCCCeE--EEehhCCCccCeEEEcCCCCEEEEEeccCceEE
Confidence            368899999888652  333333345689999999998887766555544

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.80  E-value=15  Score=30.60  Aligned_cols=96  Identities=9%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe------CCCeEEEEeccCCceeeeEEe--ecCCCcee
Q 016982           31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS------HDRNSYVWNQEGSEWVPTLVI--LRLNRAAL  102 (379)
Q Consensus        31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~~~--~~~~~~v~  102 (379)
                      -..|.+||..+.+|....  .+-.+.|+++.|..+.+.++.|.      ....+..||+.+..+...-..  ..-.++|.
T Consensus        15 C~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence            357999999987554432  23567899999986666666664      345688999998875443220  12347788


Q ss_pred             EEEECC-CCC-EEEEEe-CCCeEEEEEee
Q 016982          103 CVQWSP-KEN-KFAVGS-GAKTVCICYYE  128 (379)
Q Consensus       103 ~~~~~~-~~~-~l~~~~-~d~~v~i~~~~  128 (379)
                      .+.+.. |+. ..+.|. .++...+..++
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~d  121 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYD  121 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEc
Confidence            877743 343 443443 34554554443

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.52  E-value=14  Score=29.95  Aligned_cols=136  Identities=11%  Similarity=0.094  Sum_probs=71.3

Q ss_pred             EEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-C--CeEEEEeccC----CceeeeEEeecCCCceeEEEE
Q 016982           34 VHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-D--RNSYVWNQEG----SEWVPTLVILRLNRAALCVQW  106 (379)
Q Consensus        34 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~vw~~~~----~~~~~~~~~~~~~~~v~~~~~  106 (379)
                      -.+||+.+++.+.+...  ..--+.+-.+.+||+.|.+|+. +  ..+++++...    ..+............-.+...
T Consensus        48 s~~yD~~tn~~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEecCCCcEEeccCC--CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            45788888755554332  2223444567899999998874 2  3478887654    122111110112223334445


Q ss_pred             CCCCCEEEEEeCCCe-EEEEEeecCCc-eeEEEEEee----cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982          107 SPKENKFAVGSGAKT-VCICYYEQENN-WWVSKLIRK----RHDSSVTSVAWHPNNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       107 ~~~~~~l~~~~~d~~-v~i~~~~~~~~-~~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~  173 (379)
                      -|||+.|+.|+.... ..+|.-..... ......+..    ....-.-.+...|+|++|+.+..+.  .|||.
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~  196 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDY  196 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeC
Confidence            678999999987643 33333211110 000111100    1112223566688999999887654  45675

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.49  E-value=5.3  Score=37.11  Aligned_cols=66  Identities=20%  Similarity=0.148  Sum_probs=38.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEeec---CCceeEEEEEeec--------------------CCcCEEEEEEcC----CCcEEE
Q 016982          108 PKENKFAVGSGAKTVCICYYEQ---ENNWWVSKLIRKR--------------------HDSSVTSVAWHP----NNVFLA  160 (379)
Q Consensus       108 ~~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~~~--------------------~~~~v~~~~~~p----~~~~l~  160 (379)
                      ++...++++..||.+.......   .... ........                    .......+++++    +..+++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  234 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSV-WSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF  234 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS--EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCe-eEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence            4677888888999988877654   1111 11111011                    123455666666    678999


Q ss_pred             EeeCCCeEEEEecc
Q 016982          161 TTSTDGKCRVFSTF  174 (379)
Q Consensus       161 ~~~~d~~i~v~d~~  174 (379)
                      +.+.|+.+|+||+.
T Consensus       235 tl~~D~~LRiW~l~  248 (547)
T PF11715_consen  235 TLSRDHTLRIWSLE  248 (547)
T ss_dssp             EEETTSEEEEEETT
T ss_pred             EEeCCCeEEEEECC
Confidence            99999999999984

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.86  E-value=19  Score=31.02  Aligned_cols=97  Identities=7%  Similarity=0.030  Sum_probs=47.8

Q ss_pred             CCcEEEEEec-CCeEEEEEec--CCceEEEEEeccC-CCceEEEEEcCCCCEEEEEeCC-----------CeEEEEeccC
Q 016982           21 DHAMVAFCPN-NNEVHIYKLI--QEKWEKLHVLQKH-DQIVSGIDWSVRSNRIVTVSHD-----------RNSYVWNQEG   85 (379)
Q Consensus        21 ~~~~l~~~~~-dg~i~i~~~~--~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----------~~i~vw~~~~   85 (379)
                      ++++.++|+. ...+..+|+.  .++|..+..+... .... +++ .-+++..+.|+.+           ..+..||..+
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~-~~~-~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~   94 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA-VAA-AIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK   94 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc-eEE-EECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence            4555565554 3467777763  3445555554321 1111 222 2345566666642           2477889888


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA  119 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (379)
                      .++............-.+....-++++.+.|+.+
T Consensus        95 ~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~  128 (346)
T TIGR03547        95 NSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN  128 (346)
T ss_pred             CEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence            8765543111111111111112367777887754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.52  E-value=30  Score=32.77  Aligned_cols=154  Identities=19%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEE-eccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-ccCCcee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHV-LQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN-QEGSEWV   89 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~-~~~~~~~   89 (379)
                      .+-.+.|+.+..+|+. ..+|++++|++.....+.... .......|..+.+..+|-.+++  .+|.+.+-+ ..... .
T Consensus        85 ~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~-~  160 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICV-QKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK-L  160 (829)
T ss_pred             CeeeecccCCceEEEE-eccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcch-h
Confidence            7778999977665554 588999999997642222101 1223345666666666644443  345544433 22211 1


Q ss_pred             eeEEeec-CCCceeEEEECCCCC---EEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           90 PTLVILR-LNRAALCVQWSPKEN---KFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        90 ~~~~~~~-~~~~v~~~~~~~~~~---~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ..+...+ ..-+..|-...+++.   .++-.. ..+ ..++.......  ....+ ......+..+..+|+.++|+.-..
T Consensus       161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~--q~~~~-~~~~~~~~ki~VS~n~~~laLyt~  236 (829)
T KOG2280|consen  161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV--QLHAL-SWPNSSVVKISVSPNRRFLALYTE  236 (829)
T ss_pred             hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc--ccccc-CCCCceEEEEEEcCCcceEEEEec
Confidence            1110000 011112222222211   111111 011 11222222210  11111 122366788999999999999999


Q ss_pred             CCeEEEEec
Q 016982          165 DGKCRVFST  173 (379)
Q Consensus       165 d~~i~v~d~  173 (379)
                      .|.+.+-+.
T Consensus       237 ~G~i~~vs~  245 (829)
T KOG2280|consen  237 TGKIWVVSI  245 (829)
T ss_pred             CCcEEEEec
Confidence            999988875

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=86.44  E-value=18  Score=30.37  Aligned_cols=84  Identities=11%  Similarity=0.067  Sum_probs=0.0

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE--------------------eCCCeEEE
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV--------------------SHDRNSYV   80 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--------------------~~d~~i~v   80 (379)
                      +|++-++-+..|.|.-+|.++++.+.+..+++...   .++|.  |++++++                    ....-|.+
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r---GL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~v  286 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR---GLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAV  286 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc---cccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEE


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCC
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      -|+.++..+..+.+.+.-..+.+++.-|.
T Consensus       287 idl~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       287 IDLNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             EECCCCCEEEEEEeCCceeEEEEEEEecC

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=86.30  E-value=10  Score=27.21  Aligned_cols=106  Identities=8%  Similarity=0.120  Sum_probs=63.4

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeccCCc-----eeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCeEEEEEeec
Q 016982           60 IDWSVRSNRIVTVSHDRNSYVWNQEGSE-----WVPTLVILRLNRAALCVQWSP-----KENKFAVGSGAKTVCICYYEQ  129 (379)
Q Consensus        60 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~~~~~  129 (379)
                      -.|......|+.++.-++|.|++.....     ....+........|++++-.+     +...|+.|+. ..+..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence            3455555678888888899999876432     112223344567777776443     3456777775 5688999987


Q ss_pred             CCceeEEEEEeecCCcCEEEEEEcC----CCcEEEEeeCCCeEEEEe
Q 016982          130 ENNWWVSKLIRKRHDSSVTSVAWHP----NNVFLATTSTDGKCRVFS  172 (379)
Q Consensus       130 ~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~l~~~~~d~~i~v~d  172 (379)
                      ...     .+.+.-.+.+.++.+-.    +..++++| -+..|.-||
T Consensus        83 N~d-----~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd  123 (136)
T PF14781_consen   83 NSD-----LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFD  123 (136)
T ss_pred             Cch-----hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeC
Confidence            752     22244556777777632    22344444 455666665

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.70  E-value=19  Score=29.90  Aligned_cols=91  Identities=9%  Similarity=0.223  Sum_probs=56.0

Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe------CCCeEEEEEeecCCceeEEEEEee----cCCc
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS------GAKTVCICYYEQENNWWVSKLIRK----RHDS  145 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~~----~~~~  145 (379)
                      ..|++||..+.++...-  .+-.+.|+++.|..+.++++.|.      ....+-.||+....    -..+..    .-.+
T Consensus        16 ~~lC~yd~~~~qW~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~----w~~~~~~~s~~ipg   89 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT----WSSLGGGSSNSIPG   89 (281)
T ss_pred             CEEEEEECCCCEeecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe----eeecCCcccccCCC
Confidence            35999999998876654  34678999999986666666664      23456677776654    222211    2347


Q ss_pred             CEEEEEEcC-CC-cEEEEee-C--CCeEEEEe
Q 016982          146 SVTSVAWHP-NN-VFLATTS-T--DGKCRVFS  172 (379)
Q Consensus       146 ~v~~~~~~p-~~-~~l~~~~-~--d~~i~v~d  172 (379)
                      +|..+.+.. |. +..+.|. .  +..|..||
T Consensus        90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d  121 (281)
T PF12768_consen   90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYD  121 (281)
T ss_pred             cEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence            788887743 22 4444443 2  33466665

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=84.38  E-value=3.4  Score=20.12  Aligned_cols=26  Identities=19%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYK   38 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~   38 (379)
                      ..|.+++..+  ++++++...+.+++|.
T Consensus         2 E~i~aia~g~--~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGD--SWVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence            4688888865  5888888888999873

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=83.76  E-value=12  Score=36.34  Aligned_cols=87  Identities=15%  Similarity=0.132  Sum_probs=53.6

Q ss_pred             EEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE-eeCCC-----eEEEEeccccccccccccC
Q 016982          113 FAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT-TSTDG-----KCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       113 l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~d~-----~i~v~d~~~~~~~~~~~~~  185 (379)
                      ||... ..+.|.+-|......    +.+...+..++...+|+|||+.|+. .+.++     .|.+-|+.           
T Consensus       321 iAfv~~~~~~L~~~D~dG~n~----~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~-----------  385 (912)
T TIGR02171       321 LAFRNDVTGNLAYIDYTKGAS----RAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLN-----------  385 (912)
T ss_pred             EEEEEcCCCeEEEEecCCCCc----eEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehh-----------
Confidence            44444 335788878777652    2222356788999999999999987 44333     47777762           


Q ss_pred             CCccCCcccceEEEeecCCcceEEEEECCCCCEEE
Q 016982          186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA  220 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  220 (379)
                            ..+.-+..+...+..|..-...++|..++
T Consensus       386 ------t~~~~~vkl~ve~aaiprwrv~e~gdt~i  414 (912)
T TIGR02171       386 ------ASGSGLVKLPVENAAIPRWRVLENGDTVI  414 (912)
T ss_pred             ------ccCCCceEeecccccccceEecCCCCeEE
Confidence                  33444444554455666666666666543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PRK13615 lipoprotein LpqB; Provisional

Probab=83.68  E-value=37  Score=31.49  Aligned_cols=154  Identities=5%  Similarity=-0.028  Sum_probs=88.1

Q ss_pred             eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC-CceeeeE
Q 016982           14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG-SEWVPTL   92 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~   92 (379)
                      .+++.++++..+|....++.++++.....   ....+.  ...++.-.|.+++ .+-+...+...++..... +.....-
T Consensus       337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~---~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~  410 (557)
T PRK13615        337 DAATLSADGRQAAVRNASGVWSVGDGDRD---AVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVA  410 (557)
T ss_pred             ccceEcCCCceEEEEcCCceEEEecCCCc---ceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEee
Confidence            77899999999888877777777765532   222222  2346777888887 554444333344444332 3322211


Q ss_pred             EeecCCCceeEEEECCCCCEEEEEeC---CCeEEEEEeecCCc--eeE-EEEEe-ecCCcCEEEEEEcCCCcEEEEee--
Q 016982           93 VILRLNRAALCVQWSPKENKFAVGSG---AKTVCICYYEQENN--WWV-SKLIR-KRHDSSVTSVAWHPNNVFLATTS--  163 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~--~~~-~~~~~-~~~~~~v~~~~~~p~~~~l~~~~--  163 (379)
                      ......+.|..+..|+||..++.-..   .+.|.+--+.....  ..+ ..... ......+.++.|..++.+.+.+.  
T Consensus       411 v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~  490 (557)
T PRK13615        411 VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAP  490 (557)
T ss_pred             ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccC
Confidence            11112368999999999988776543   35676644433221  112 12111 11234889999998888766552  


Q ss_pred             -CCCeEEEEec
Q 016982          164 -TDGKCRVFST  173 (379)
Q Consensus       164 -~d~~i~v~d~  173 (379)
                       .+..+++..+
T Consensus       491 ~~~~~v~~v~v  501 (557)
T PRK13615        491 DGERQVELHQV  501 (557)
T ss_pred             CCCceEEEEEC
Confidence             2344555544

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=83.42  E-value=33  Score=30.67  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=24.5

Q ss_pred             cCEEEEEEcCCCcEEEEeeCCCeEEEEecc
Q 016982          145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTF  174 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~  174 (379)
                      ..|..++..+..+.+++.+.++.|.+|++.
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            348999999888999999999999999984

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=83.17  E-value=4  Score=19.94  Aligned_cols=26  Identities=15%  Similarity=0.147  Sum_probs=18.0

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEE
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIY   37 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~   37 (379)
                      ....++.+++|+++++=+....|++|
T Consensus         3 ~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            34667777788777776666676654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=82.80  E-value=5.6  Score=21.38  Aligned_cols=31  Identities=13%  Similarity=0.224  Sum_probs=20.9

Q ss_pred             CCCcEEEEEe-cCCeEEEEEecCCceEEEEEecc
Q 016982           20 PDHAMVAFCP-NNNEVHIYKLIQEKWEKLHVLQK   52 (379)
Q Consensus        20 ~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~   52 (379)
                      |++++|.++. .++.|.++|..+.  +.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~--~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATN--KVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCC--eEEEEEEC
Confidence            5777666654 4789999998776  45444443

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=82.50  E-value=58  Score=32.88  Aligned_cols=179  Identities=13%  Similarity=0.026  Sum_probs=92.0

Q ss_pred             eEEEEeccCCceeeeEEeecCCCceeEEEEC-----CC----CCEEEEEeC---------CCeEEEEEeec-----CC--
Q 016982           77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWS-----PK----ENKFAVGSG---------AKTVCICYYEQ-----EN--  131 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~----~~~l~~~~~---------d~~v~i~~~~~-----~~--  131 (379)
                      .|.+-+..+.+.+..+.+. ...-+.++...     ..    ..+|++|..         .|.+.++|+-.     ++  
T Consensus      1005 ~i~LisP~sw~vi~~iefq-~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQ-ENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred             eeEEecCCccccccccccC-ccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence            4555555555555554432 23334444432     11    246777752         58899999754     11  


Q ss_pred             -ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE-EeecCCcceEE
Q 016982          132 -NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFG  209 (379)
Q Consensus       132 -~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~  209 (379)
                       ...+.........++|..++=- +|.++ ++ ....|.+|++.                 +....+- .|.  .-++.-
T Consensus      1084 t~~KlKel~~eE~KGtVsavceV-~G~l~-~~-~GqKI~v~~l~-----------------r~~~ligVaFi--D~~~yv 1141 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RGHLL-SS-QGQKIIVRKLD-----------------RDSELIGVAFI--DLPLYV 1141 (1366)
T ss_pred             ccceeeeeehhhcccceEEEEEe-ccEEE-Ec-cCcEEEEEEec-----------------cCCcceeeEEe--ccceeE
Confidence             1122233335566777776532 55544 33 34578899861                 1122111 111  111222


Q ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee--ecCCeeeEEEecCCc---EEEEEeCCCeEEEEecCC
Q 016982          210 VKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF--RDLPLRDVLFVSEKM---VIGVGFDCNPMVFAADET  278 (379)
Q Consensus       210 ~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~~~---~l~~~~d~~~~i~~~~~~  278 (379)
                      ....--+++++.|.--..|.+.-.+.....+..+..  ..-.+++..|--||.   ++++-.++++++|.+...
T Consensus      1142 ~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1142 HSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred             EehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence            222223566666666666776655443322222221  123478888887775   455778889999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	379
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		2e-77
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		4e-77
3dwl_C	377	Crystal Structure Of Fission Yeast Arp2/3 Complex L		2e-58
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-10
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-04
2h9l_A	329	Wdr5delta23 Length = 329		4e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		8e-04
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		9e-04

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score =  285 bits (730), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 158/380 (41%), Positives = 222/380 (58%), Gaps = 22/380 (5%)
Query: 4   IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW ++H L++H+  V+GIDW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW 60
Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P E KFAVGSG++ +
Sbjct: 61  APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            ICY+EQEN+WWV K I+K   S+V S+ WHPN+V LA  S D KCR+FS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                 S   FGE + +   S  W  GV +S +G+ +A+V H+S +   D      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA-T 239
Query: 243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGS 301
           +A   LPL  V F++E  ++  G DC P++F  D   G  +F   LD  K SS   + G 
Sbjct: 240 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS---QRGL 296
Query: 302 QFSEAFGKL------YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT 355
              E F  L       G +  G G D++         H N ++ I  L   G ++ ++F 
Sbjct: 297 TARERFQNLDKKASSEGSAAAGAGLDSL---------HKNSVSQISVL-SGGKAKCSQFC 346
Query: 356 TSGLDGKIVTWDLESQEDLL 375
           T+G+DG +  WD+ S E  L
Sbjct: 347 TTGMDGGMSIWDVRSLESAL 366

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score =  285 bits (728), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 157/380 (41%), Positives = 222/380 (58%), Gaps = 22/380 (5%)
Query: 4   IAVHQF-AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDW 62
           +A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW ++H L++H+  V+G+DW
Sbjct: 1   MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 60
Query: 63  SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTV 122
           +  SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P E KFAVGSG++ +
Sbjct: 61  APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 120
Query: 123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE 182
            ICY+EQEN+WWV K I+K   S+V S+ WHPN+V LA  S D KCR+FS +IK V+ + 
Sbjct: 121 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 180
Query: 183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN 242
                 S   FGE + +   S  W  GV +S +G+ +A+V H+S +   D      +A  
Sbjct: 181 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA-T 239
Query: 243 VAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGS 301
           +A   LPL  V F++E  ++  G DC P++F  D   G  +F   LD  K SS   + G 
Sbjct: 240 LASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS---QRGL 296
Query: 302 QFSEAFGKL------YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT 355
              E F  L       G +  G G D++         H N ++ I  L   G ++ ++F 
Sbjct: 297 TARERFQNLDKKASSEGSAAAGAGLDSL---------HKNSVSQISVL-SGGKAKCSQFC 346
Query: 356 TSGLDGKIVTWDLESQEDLL 375
           T+G+DG +  WD+ S E  L
Sbjct: 347 TTGMDGGMSIWDVRSLESAL 366

>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 377

Iteration: 1
 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 193/365 (52%), Gaps = 16/365 (4%)
Query: 16  HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD 75
           HA++            N+V +Y+     W+       HD+IV+ +DW+ +SNRIVT S D
Sbjct: 17  HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76
Query: 76  RNSYVWNQE-GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW 134
           RN+YV+ +     W  TLV+LRLNRAA  V+WSP E+KFAVGSGA+ + +CY+EQEN+WW
Sbjct: 77  RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW 136
Query: 135 VSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
           VSK +++   S++ S+ WHPNNV LA    D K  V S +++ VD K +     S   F 
Sbjct: 137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN 196
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS--PLAQ-NVAFRDLPLR 251
               +   S  W   V +SPSGN LAY GH+S +       P   P A   V    LPLR
Sbjct: 197 TVCAEYP-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLR 255
Query: 252 DVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDE-------RKTSSSGPKYGSQFS 304
            +L+ +E  ++  G++ +P++   +E+G W   + LD          T ++G     +  
Sbjct: 256 SLLWANESAIVAAGYNYSPILLQGNESG-WAHTRDLDAGTSKTSFTHTGNTGEGREEEGP 314
Query: 305 EAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGS-SRITRFTTSGLDGKI 363
            +F  L    +      + +S  +    H N I  + P   AG+   IT FT+SG DG++
Sbjct: 315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY--AGTPGNITAFTSSGTDGRV 372
Query: 364 VTWDL 368
           V W L
Sbjct: 373 VLWTL 377

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
Query: 17  AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR 76
           AWSP    +A    +    I+K  Q+ +E +  L+ H+  V  + W+   N + T S D+
Sbjct: 68  AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 127
Query: 77  NSYVWN-QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV 135
           + +VW   E  E+    V+    +    V W P +   A  S   TV + Y E+E++ WV
Sbjct: 128 SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL-YREEEDD-WV 185
Query: 136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKG 177
                + H+S+V S+A+ P+   LA+ S D   R++  ++ G
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG 227

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 60  IDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR-LNRAALCVQWSPKENKFAVGSG 118
           + W+     + +   DR   +W  EG  W+   V+     R    V WSP  N  A  S 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 119 AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGV 178
             T CI    Q++   V+ L  + H++ V SVAW P+   LAT S D      S ++  V
Sbjct: 82  DATTCIWKKNQDDFECVTTL--EGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEV 134
Query: 179 DIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI 228
           D +++ E  S      + +            V W PS   LA   ++  +
Sbjct: 135 DEEDEYECVSVLNSHTQDVKH----------VVWHPSQELLASASYDDTV 174

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 40/252 (15%)
Query: 8   QFAQCITCH-------AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           Q  Q +T H       A+SPD   +A   ++  V   KL     + L  L  H   V G+
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVRGV 391
Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
            +S     I + S D+   +WN+ G + + TL     + +   V +SP +   A  S  K
Sbjct: 392 AFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVWGVAFSPDDQTIASASDDK 448
Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF--------- 171
           TV +      N   +  L    H SSV  VA+ P+   +A+ S D   +++         
Sbjct: 449 TVKLW---NRNGQLLQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 503
Query: 172 ----STFIKGVDIKEKKE--GTSSDTKF-------GEQILQLDLSFSWAFGVKWSPSGNT 218
               S+ ++GV      +   ++SD K        G+ +  L    S  +GV +SP G T
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 563
Query: 219 LAYVGHNSMIYF 230
           +A    +  +  
Sbjct: 564 IASASSDKTVKL 575

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 12/161 (7%)
Query: 17  AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK----HDQIVSGIDWSVRSNRIVTV 72
           A++P    +A    +N+  +Y L  +K E +   +K    H   +S   ++    +I+T 
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 73  SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQE 130
           S D    +W+ E  + + +      +   LC+  +P E  N F  G   K   +  ++  
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGAD--VLCLDLAPSETGNTFVSGGCDKKAMV--WDMR 228
Query: 131 NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF 171
           +   V     + H+S V SV ++P+    A+ S D  CR++
Sbjct: 229 SGQCVQAF--ETHESDVNSVRYYPSGDAFASGSDDATCRLY 267

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SPD   +A    +  + I+ +  E  + + +LQ H+Q +  +D+    +++V+ S DR 
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDI--ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    +   TL I         V  SP + K+ + +G+    +  ++ E  + V +
Sbjct: 189 VRIWDLRTGQCSLTLSI---EDGVTTVAVSPGDGKY-IAAGSLDRAVRVWDSETGFLVER 244
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDI 180
           L     DS   S   H ++V+    + DG+  V  +  + V +
Sbjct: 245 L-----DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           M  +A H  A  ++   +SP+   +A    +  + I+     K+EK   +  H   +S +
Sbjct: 19  MFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDV 74
Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
            WS  SN +V+ S D+   +W+    + + TL     +    C  ++P+ N    GS  +
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           +V I  ++ +    +  L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 133 SVRI--WDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 1   MAAIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGI 60
           M  +A H  A  ++   +SP+   +A    +  + I+     K+EK   +  H   +S +
Sbjct: 19  MFTLAGHTKA--VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDV 74
Query: 61  DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK 120
            WS  SN +V+ S D+   +W+    + + TL     +    C  ++P+ N    GS  +
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 121 TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           +V I  ++ +    +  L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 133 SVRI--WDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 92  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 147
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 148 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 34  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 92  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 147
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 148 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 34  FSPNGEWLAASSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 91
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 92  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 147
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 148 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 95  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 150
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 151 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 30  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 87
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 88  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 143
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 144 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 48  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 105
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 106 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 161
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 162 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 95  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 150
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 151 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 36  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 93
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 94  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 149
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 150 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 37  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 94
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 95  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 150
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 151 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 32  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 89
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 90  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 145
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 146 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 31  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 88
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 89  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 144
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 145 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 27  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 84
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 85  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 140
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 141 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 31  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 88
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 89  LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 144
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 145 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 55  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 112
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 113 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 168
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 169 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 18  WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN 77
           +SP+   +A    +  + I+     K+EK   +  H   +S + WS  SN +V+ S D+ 
Sbjct: 53  FSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKT 110
Query: 78  SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSK 137
             +W+    + + TL     +    C  ++P+ N    GS  ++V I  ++ +    +  
Sbjct: 111 LKIWDVSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVKTGKCLKT 166
Query: 138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           L    H   V++V ++ +   + ++S DG CR++ T
Sbjct: 167 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 104/275 (37%), Gaps = 27/275 (9%)
Query: 25  VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWN 82
           +A C ++  + I+++  E  + +  L  H+  V  +DW+       + + S+D    +W 
Sbjct: 24  MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 83  QEGSEWVPTLVILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQENNWWVSKLIR 140
           +E   W    V    + +   VQW+P E      V S    V +  +++      S +I 
Sbjct: 84  EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--TSPIII 141
Query: 141 KRHDSSVTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
             H   V S +W P     AT   DG      + R F T      +K  K  + + T   
Sbjct: 142 DAHAIGVNSASWAP-----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM----IYFVDDVGPSP----LAQNVAFR 246
           E  L+      W   V WSP+    +Y+   S     I +  D    P    L +   F 
Sbjct: 197 ESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 247 DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW 281
           D+  R    +S  ++   G D    ++  +  G W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 104/275 (37%), Gaps = 27/275 (9%)
Query: 25  VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWN 82
           +A C ++  + I+++  E  + +  L  H+  V  +DW+       + + S+D    +W 
Sbjct: 24  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 83  QEGSEWVPTLVILRLNRAALCVQWSPKENK--FAVGSGAKTVCICYYEQENNWWVSKLIR 140
           +E   W    V    + +   VQW+P E      V S    V +  +++      S +I 
Sbjct: 84  EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIII 141
Query: 141 KRHDSSVTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
             H   V S +W P     AT   DG      + R F T      +K  K  + + T   
Sbjct: 142 DAHAIGVNSASWAP-----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 196
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM----IYFVDDVGPSP----LAQNVAFR 246
           E  L+      W   V WSP+    +Y+   S     I +  D    P    L +   F 
Sbjct: 197 ESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 247 DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW 281
           D+  R    +S  ++   G D    ++  +  G W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 289

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 104/275 (37%), Gaps = 27/275 (9%)
Query: 25  VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWN 82
           +A C ++  + I+++  E  + +  L  H+  V  +DW+       + + S+D    +W 
Sbjct: 26  LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 83  QEGSEWVPTLVILRLNRAALCVQWSPKENK--FAVGSGAKTVCICYYEQENNWWVSKLIR 140
           +E   W    V    + +   VQW+P E      V S    V +  +++      S +I 
Sbjct: 86  EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--TSPIII 143
Query: 141 KRHDSSVTSVAWHPNNVFLATTSTDG------KCRVFSTFIKGVDIKEKKEGTSSDTKFG 194
             H   V S +W P     AT   DG      + R F T      +K  K  + + T   
Sbjct: 144 DAHAIGVNSASWAP-----ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL 198
Query: 195 EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM----IYFVDDVGPSP----LAQNVAFR 246
           E  L+      W   V WSP+    +Y+   S     I +  D    P    L +   F 
Sbjct: 199 ESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 256
Query: 247 DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW 281
           D+  R    +S  ++   G D    ++  +  G W
Sbjct: 257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.92
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.87
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.87
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.79
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.78
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.75
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.74
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.73
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.68
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.66
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.65
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.61
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.6
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.59
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.56
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.52
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.48
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.44
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.41
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.33
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.27
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.26
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.25
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.24
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.24
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.24
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.21
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.2
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.16
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.14
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.13
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.1
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	99.08
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.05
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.03
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.03
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.02
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.02
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.99
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.98
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.95
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.9
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.89
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.89
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.83
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.83
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.82
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.81
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.74
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.73
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.72
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.71
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.68
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.67
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.65
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.64
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.63
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.62
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.6
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.57
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.56
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.56
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.55
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.53
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.48
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.47
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.45
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.42
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.42
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.38
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.38
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.36
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.36
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.36
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.32
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.23
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.21
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.09
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.01
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.99
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.99
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.99
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.91
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.9
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.88
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.87
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.84
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.81
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.81
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.78
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.75
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.68
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.65
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.56
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.53
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.53
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.52
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.5
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.49
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.45
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.44
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.41
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.4
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.39
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.38
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.21
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.19
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.13
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.89
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.78
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.73
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.71
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.71
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.48
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.34
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.37
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.27
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.25
3ott_A	758	Two-component system sensor histidine kinase; beta	95.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.19
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.96
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.9
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.2
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	91.94
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.06
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	89.89
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	89.33
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.2
3ott_A	758	Two-component system sensor histidine kinase; beta	87.95
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.23
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.91
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	85.48

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-50  Score=340.82  Aligned_cols=288  Identities=18%  Similarity=0.211  Sum_probs=253.0

Q ss_pred             eeccCcceeEEEeCCC----CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982            6 VHQFAQCITCHAWSPD----HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      +.+|.+.|++++|+|+    +.+|++|+.|+.|++|++.+++......+.+|...|.+++|+|++.++++++.|++|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lW  107 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLW  107 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            4689999999999985    578999999999999999887666677899999999999999999999999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      |+.+++....+  ..+...+.+++|+|++++|++++.|+.+++|+++.+.   ....+ ..+...+.+++|+|++++|++
T Consensus       108 d~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~---~~~~~-~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          108 DLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK---KEYSL-DTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             ETTTTEEEEEE--ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS---EEEEE-ECSSSCEEEEEECTTSSEEEE
T ss_pred             ECCCCCEEEEE--eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc---eeEEe-cCCCceEEEEEECCCCCEEEE
Confidence            99999866555  5677889999999999999999999999999998877   34445 678889999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      ++.|+.|++||+                  .+++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+++.. ...
T Consensus       182 g~~dg~i~iwd~------------------~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-~~~  242 (321)
T 3ow8_A          182 GAIDGIINIFDI------------------ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-LAG  242 (321)
T ss_dssp             EETTSCEEEEET------------------TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-EEE
T ss_pred             EcCCCeEEEEEC------------------CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-eeE
Confidence            999999999997                  6788889999999999999999999999999999999999998876 457


Q ss_pred             eeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN  320 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
                      .+.+|...|.+++|+|++++|+ ++.|+.+++|+.....   ...                                   
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~-----------------------------------  284 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVH-----------------------------------  284 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEE-----------------------------------
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---EEE-----------------------------------
Confidence            8888999999999999999887 6788999999976542   111                                   


Q ss_pred             cccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                              .+.+|...|++++ |++++    .+|+|++.||.|++||+.
T Consensus       285 --------~~~~h~~~v~~v~-~s~~g----~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          285 --------TFFDHQDQVWGVK-YNGNG----SKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             --------EECCCSSCEEEEE-ECTTS----SEEEEEETTCCEEEEECC
T ss_pred             --------EEcCCCCcEEEEE-ECCCC----CEEEEEeCCCeEEEEeCC
Confidence                    1247999999999 77665    899999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.6e-51  Score=355.70  Aligned_cols=288  Identities=17%  Similarity=0.197  Sum_probs=255.7

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|.++|++++|+|++++|++|+.||.|++||+.++  +....+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            356789999999999999999999999999999999987  567889999999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .+++....+  .+|...|.+++|+|++++|++++.|+.|++||++++.   ....+ .+|...|.++.|+|++++|++++
T Consensus       180 ~~~~~~~~~--~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~---~~~~~-~~h~~~v~~~~~~~~g~~l~s~s  253 (410)
T 1vyh_C          180 QGFECIRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVKTF-TGHREWVRMVRPNQDGTLIASCS  253 (410)
T ss_dssp             TSSCEEECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEE-ECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---EEEEE-eCCCccEEEEEECCCCCEEEEEc
Confidence            988865554  6799999999999999999999999999999999887   45666 78999999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC--------------------CCEEEEEc
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS--------------------GNTLAYVG  223 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------------------~~~l~~~~  223 (379)
                      .|+.|++||+                  .++++...+..|...|.+++|+|+                    +.+|++++
T Consensus       254 ~D~~v~vwd~------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          254 NDQTVRVWVV------------------ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             TTSCEEEEET------------------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             CCCeEEEEEC------------------CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            9999999997                  667888889999999999999996                    67899999


Q ss_pred             CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCC
Q 016982          224 HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQ  302 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
                      .|+.|++||++++. ++..+.+|...|.+++|+|+|++|+ ++.|+.+++|+........                    
T Consensus       316 ~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~--------------------  374 (410)
T 1vyh_C          316 RDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK--------------------  374 (410)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE--------------------
T ss_pred             CCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--------------------
Confidence            99999999998876 4578888999999999999998777 6678899999876543222                    


Q ss_pred             cccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          303 FSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                                .+.+|...|++++ |++++    .+|+|||.||+|++|+++
T Consensus       375 --------------------------~~~~h~~~v~~l~-~~~~~----~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          375 --------------------------TLNAHEHFVTSLD-FHKTA----PYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             --------------------------EEECCSSCEEEEE-ECSSS----SCEEEEETTSEEEEEC--
T ss_pred             --------------------------EEcCCCCcEEEEE-EcCCC----CEEEEEeCCCcEEEEeCC
Confidence                                      2257999999999 76665    899999999999999964

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.6e-50  Score=341.90  Aligned_cols=313  Identities=19%  Similarity=0.323  Sum_probs=248.0

Q ss_pred             ceeccCc-ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEE-EeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            5 AVHQFAQ-CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLH-VLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         5 ~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      .+.+|.. .|++++|+|+|++||+|+.|+.|+|||+.++...... ...+|...|.+++|+|++++|++++.|+++++|+
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~   89 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK   89 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence            4667877 9999999999999999999999999999987433333 3468999999999999999999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +..+.......+.+|...|.+++|+|++++|++++.|+.|++||++..........+ ..|...|.+++|+|++++|+++
T Consensus        90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~  168 (345)
T 3fm0_A           90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASA  168 (345)
T ss_dssp             ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEE
T ss_pred             ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEE
Confidence            988765555556789999999999999999999999999999999887654445555 7899999999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCccc--ceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc--
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG--EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP--  238 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~--  238 (379)
                      +.|+.|++||+                  ..+  .+...+.+|...|.+++|+|+|++|++++.|+.|++||......  
T Consensus       169 s~d~~i~~w~~------------------~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~  230 (345)
T 3fm0_A          169 SYDDTVKLYRE------------------EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ  230 (345)
T ss_dssp             ETTSCEEEEEE------------------ETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred             eCCCcEEEEEe------------------cCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence            99999999997                  223  35577889999999999999999999999999999999643211  


Q ss_pred             ------------eeeeeee-ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcc
Q 016982          239 ------------LAQNVAF-RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFS  304 (379)
Q Consensus       239 ------------~~~~~~~-~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
                                  ++..+.+ |...|.+++|+|++.+|+ ++.|+.+++|+.+....-.           .          
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-----------~----------  289 (345)
T 3fm0_A          231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ-----------Q----------  289 (345)
T ss_dssp             CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT-----------S----------
T ss_pred             cceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc-----------e----------
Confidence                        1223333 778899999999988776 7789999999875432000           0          


Q ss_pred             cccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          305 EAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      +.+. +               ......+|...|++|+ |+|++   ..+|||||.||.|++|++.+++.+..+
T Consensus       290 ~~~~-~---------------~~~~~~~h~~~V~~v~-~~p~~---~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          290 PTFS-L---------------TAHLHQAHSQDVNCVA-WNPKE---PGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             CCEE-E---------------EEEETTSSSSCEEEEE-ECSSS---TTEEEEEETTSCEEEEEECC-------
T ss_pred             eeEE-E---------------EeeecccccCcEeEeE-EeCCC---ceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            0000 0               0002358999999999 66554   159999999999999999988776543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.8e-52  Score=360.12  Aligned_cols=360  Identities=36%  Similarity=0.655  Sum_probs=263.3

Q ss_pred             Ccccceec-cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982            1 MAAIAVHQ-FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY   79 (379)
Q Consensus         1 m~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (379)
                      |+++.++. +.++|++++|+|++++||+|+.|+.|++||+.++.++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus         1 m~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~   80 (377)
T 3dwl_C            1 MATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY   80 (377)
T ss_dssp             -CCEEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred             CCcceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence            67777666 57899999999999999999999999999999875577888999999999999999999999999999999


Q ss_pred             EEeccCCc-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec-CCcCEEEEEEcCCCc
Q 016982           80 VWNQEGSE-WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR-HDSSVTSVAWHPNNV  157 (379)
Q Consensus        80 vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~  157 (379)
                      +||+.+++ .........|...|.+++|+|++++|++++.|+.|++||++....+.....+ .. |...|.+++|+|+++
T Consensus        81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEE-CSSCCSCEEEEEECTTSS
T ss_pred             EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEe-ecccCCCeEEEEEcCCCC
Confidence            99999876 4445555779999999999999999999999999999999887643345566 45 999999999999999


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      +|++++.|+.|++||+.....+.+....+.....+.++++..+ .|...|.+++|+|++++|++++.|+.|++||+.++.
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            9999999999999998655444444444333334567777778 899999999999999999999999999999999876


Q ss_pred             ce---eeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCC-----------CCccCCCc
Q 016982          238 PL---AQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSS-----------GPKYGSQF  303 (379)
Q Consensus       238 ~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~  303 (379)
                      ..   +..+..|..+|.+++|+|++++|+++.++.+.+|.....+ |.+...++.......           ....+..+
T Consensus       239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (377)
T 3dwl_C          239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESG-WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSF  317 (377)
T ss_dssp             SCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC----CCSBCCCSCCCCCCBSSSSSBCCCCCC------
T ss_pred             CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCc-eEEEeeeccccccccccccccccccccccccccc
Confidence            51   4677888999999999999999999999999999877544 554444433222211           00111111


Q ss_pred             ccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          304 SEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                      +.....|...+..+...    .......+|.+.|+++++++.++ .+...|+|||.||.|++||+
T Consensus       318 ~~~~~~~~~~~~~g~~~----~~~~~~~~H~~~i~~~~~~~~~~-~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          318 TALRSTFRNMDLKGSSQ----SISSLPTVHQNMIATLRPYAGTP-GNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -----------------------CCCSSSCSSCEEEEEEEEEET-TEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccchhhccccc----cccccCccccceeEEEeccCCCC-CceEEEEeecCCCcEEEecC
Confidence            22224444333333221    22234567999999999776554 12237999999999999986

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.1e-49  Score=341.52  Aligned_cols=366  Identities=40%  Similarity=0.736  Sum_probs=282.9

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      +..|.++|++++|+|++++|++++.|+.|++||+.+++.+.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            34588999999999999999999999999999999985558899999999999999999999999999999999999999


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ++.........|...|.+++|+|++++|++++.|+.|++||++..........+...|...|.+++|+|++++|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            98777776677899999999999999999999999999999998875544455546789999999999999999999999


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      +.|++||+.....+.+............++++..+..|...|.+++|+|++++|++++.|+.|++||+.+++ .+..+..
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~  242 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-AVATLAS  242 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-EEEEEEC
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-eeEEEcc
Confidence            999999975433333333333332235678888898999999999999999999999999999999998876 4577888


Q ss_pred             ecCCeeeEEEecCCcEEEEEeCCCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccc
Q 016982          246 RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVE  324 (379)
Q Consensus       246 ~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (379)
                      |..+|.+++|+|++++++++.|+.+++|+... .+.|.+...++.........      ......|...+..+.......
T Consensus       243 ~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  316 (372)
T 1k8k_C          243 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG------LTARERFQNLDKKASSEGSAA  316 (372)
T ss_dssp             SSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------------CHHHHHHHCCCCC-------
T ss_pred             CCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhh------cchhhhhhhcccccccccCcc
Confidence            88899999999999999999999999999876 35577654443221111000      001111110011111000000


Q ss_pred             cccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc-cccCCC
Q 016982          325 SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED-LLNYHL  379 (379)
Q Consensus       325 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~-~~~~~~  379 (379)
                      +......+|...|++++++++++ .++.+|+|||.||.|++|++.+++. ++.++|
T Consensus       317 ~~~~~~~~h~~~v~~~~~~~~~g-~~~~~l~s~~~Dg~i~~W~~~~~~~~~~~~~~  371 (372)
T 1k8k_C          317 AGAGLDSLHKNSVSQISVLSGGK-AKCSQFCTTGMDGGMSIWDVRSLESALKDLKI  371 (372)
T ss_dssp             --CCCSSSSSSCEEEEEEEESTT-TSCSEEEEEETTSEEEEEEHHHHHHHCTTCCC
T ss_pred             ccccccccccCCcceeEEecCCC-cceeeEEEecCCCceEEEEecChhHhhhhccc
Confidence            00123358999999999776542 1227999999999999999998544 455543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.5e-49  Score=332.04  Aligned_cols=298  Identities=14%  Similarity=0.145  Sum_probs=251.9

Q ss_pred             cceeccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCc---eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEE
Q 016982            4 IAVHQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEK---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSY   79 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (379)
                      .++.+|.++|++++|+|++ ++|++|+.|+.|++|++....   ..++..+.+|...|.+++|+|++++|++++.|++|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR   90 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence            3578999999999999965 899999999999999987532   246778999999999999999999999999999999


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC----
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN----  155 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----  155 (379)
                      +||+.+++....+  .+|...|.+++|+|++++|++++.|+.|++||++..    ....+ .+|...|.++.|.|.    
T Consensus        91 ~wd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~----~~~~~-~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           91 LWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ----CLATL-LGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             EEETTTTEEEEEE--ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC----EEEEE-CCCSSCEEEEEECCC----
T ss_pred             EEECCCCCeeEEE--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEE-eccCCcEEEEEEccCCCCC
Confidence            9999999865554  689999999999999999999999999999998654    24455 789999999999985    


Q ss_pred             --CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          156 --NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       156 --~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                        +..+++++.|+.|++||+                  ...+....+.+|...|.+++|+|+|++|++++.|+.|++||+
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~------------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNL------------------NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL  225 (319)
T ss_dssp             --CCEEEEEETTSCEEEEET------------------TTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             CCccEEEEEeCCCEEEEEEC------------------CcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence              458999999999999997                  566777888999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecc
Q 016982          234 VGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQ  313 (379)
Q Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (379)
                      .+.+. +..+. +..+|.+++|+|++.+|+++.++.+++|..+......   .+....                .     
T Consensus       226 ~~~~~-~~~~~-~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~---~~~~~~----------------~-----  279 (319)
T 3frx_A          226 AAKKA-MYTLS-AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD---DLRPEF----------------A-----  279 (319)
T ss_dssp             TTTEE-EEEEE-CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEE---EECCCC----------------T-----
T ss_pred             CCCcE-EEEec-CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeee---ccCccc----------------c-----
Confidence            88763 45555 3568999999999999999999999999987543221   111000                0     


Q ss_pred             ccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          314 SKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                    .....|...|.+++ |++++    ++|++|+.||.|++||+.++
T Consensus       280 --------------~~~~~~~~~v~~~~-~spdg----~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          280 --------------GYSKAAEPHAVSLA-WSADG----QTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             --------------TCCGGGCCCEEEEE-ECTTS----SEEEEEETTSCEEEEEEEEC
T ss_pred             --------------ccccCcCcceeEEE-ECCCC----CEEEEeecCceEEEEEEeec
Confidence                          01145778899999 87776    99999999999999999764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1e-48  Score=334.39  Aligned_cols=286  Identities=15%  Similarity=0.178  Sum_probs=246.9

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.++|++++|+|++++|++|+.||.|++||+.++  +.+..+..|...|.+++|+|++++|++++.|+.+++|++.
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~  127 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence            57789999999999999999999999999999999887  6778888999999999999999999999999999999998


Q ss_pred             CCce--eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           85 GSEW--VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        85 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +.+.  .......+|...|.++.|++++. +++++.|+.|++||++++.   ....+ .+|...|.+++|+|++++|+++
T Consensus       128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~---~~~~~-~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          128 TREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ---QTTTF-TGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             TCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE---EEEEE-CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc---EEEEE-cCCCCceEEEEECCCCCEEEEE
Confidence            7631  22334467999999999998775 8899999999999998876   45555 7899999999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      +.|+.|++||+                  +.+.++..+.+|...|.+++|+|++++|++++.|+.|++||++..... ..
T Consensus       203 ~~d~~v~~wd~------------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-~~  263 (340)
T 1got_B          203 ACDASAKLWDV------------------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MT  263 (340)
T ss_dssp             ETTSCEEEEET------------------TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EE
T ss_pred             eCCCcEEEEEC------------------CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE-EE
Confidence            99999999997                  667888899999999999999999999999999999999999886543 33


Q ss_pred             eee--ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCc
Q 016982          243 VAF--RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVG  319 (379)
Q Consensus       243 ~~~--~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
                      +..  +...|.+++|+|+|++|+ ++.|+.+++|+........                                     
T Consensus       264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~-------------------------------------  306 (340)
T 1got_B          264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG-------------------------------------  306 (340)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-------------------------------------
T ss_pred             EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee-------------------------------------
Confidence            332  234799999999999888 5678899999876543211                                     


Q ss_pred             ccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          320 NDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       320 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                               .+.+|.+.|++++ |++++    .+|+|||.||.|++||
T Consensus       307 ---------~~~~h~~~v~~~~-~s~dg----~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          307 ---------VLAGHDNRVSCLG-VTDDG----MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ---------EEECCSSCEEEEE-ECTTS----SCEEEEETTSCEEEEC
T ss_pred             ---------EeecCCCcEEEEE-EcCCC----CEEEEEcCCccEEecC
Confidence                     2258999999999 77666    8999999999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7e-48  Score=329.67  Aligned_cols=305  Identities=15%  Similarity=0.181  Sum_probs=248.7

Q ss_pred             cceeccCcceeEEEe-----CC-CCcEEEEEecCCeEEEEEecCCc-----eEEEEEeccCCCceEEEEEcCCCCEEEEE
Q 016982            4 IAVHQFAQCITCHAW-----SP-DHAMVAFCPNNNEVHIYKLIQEK-----WEKLHVLQKHDQIVSGIDWSVRSNRIVTV   72 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~-----s~-~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   72 (379)
                      ..+.+|.+.|++++|     ++ ++++|++|+.|+.|++||+.+.+     ..+...+.+|...|.+++|+|++.+|+++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~   94 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS   94 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence            357899999999999     77 89999999999999999997542     35677889999999999999999999999


Q ss_pred             eCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEE--eecCCcCEEEE
Q 016982           73 SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLI--RKRHDSSVTSV  150 (379)
Q Consensus        73 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--~~~~~~~v~~~  150 (379)
                      +.|++|++||+.+++....+  ..|...|.+++|+|++++|++++.|+.|++||+....    ....  ...|...|.++
T Consensus        95 s~D~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC----KFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEE--ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE----EEECCTTTSCSSCEEEE
T ss_pred             cCCCcEEEEECCCCcEEEEE--cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc----eeeeecccCCCceeeee
Confidence            99999999999998865554  6799999999999999999999999999999987432    2222  03688899999


Q ss_pred             EEcCCC----------cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEE
Q 016982          151 AWHPNN----------VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA  220 (379)
Q Consensus       151 ~~~p~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  220 (379)
                      +|+|++          .+|++++.|+.|++||.                   ..+....+..|...|.+++|+|+|++|+
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-------------------~~~~~~~~~~h~~~v~~~~~s~~g~~l~  229 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-------------------NFQIRYTFKAHESNVNHLSISPNGKYIA  229 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-------------------TTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEcC-------------------CCceeEEEcCccccceEEEECCCCCEEE
Confidence            999987          78999999999999984                   2456677889999999999999999999


Q ss_pred             EEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccC
Q 016982          221 YVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG  300 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (379)
                      +++.|+.|++||+.........+ .+...|.+++|+|++++++++.|+.+++|+........... +....         
T Consensus       230 sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~-~~~~~---------  298 (343)
T 2xzm_R          230 TGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCT-IEAEP---------  298 (343)
T ss_dssp             EEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEE-CCCCS---------
T ss_pred             EEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEE-eecCc---------
Confidence            99999999999996544333443 34667999999999999999999999999976533211111 00000         


Q ss_pred             CCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982          301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                            ..                 ......+|...|++++ |++++    ++|++|+.||.|++|++.+++
T Consensus       299 ------~~-----------------~~~~~~~~~~~v~~~~-~sp~g----~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          299 ------IT-----------------KAEGQKGKNPQCTSLA-WNALG----KKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             ------GG-----------------GBTTBCCSCCCEEEEE-ECSSS----CCEEEEETTSEEEEEEEEEEE
T ss_pred             ------ch-----------------hhhhhcCCCCceEEEE-ECCCC----CeEEEecCCceEEEEEEEccC
Confidence                  00                 0001247889999999 77666    899999999999999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-47  Score=325.68  Aligned_cols=301  Identities=19%  Similarity=0.282  Sum_probs=235.2

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe-cc-CCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL-QK-HDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      .+.+|.++|++++|+|+  +||+|+.|+.|++|++..+.......+ .+ |...|.+++|+|++++|++++.|++|++||
T Consensus         9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~   86 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA   86 (330)
T ss_dssp             EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            46789999999999987  999999999999999987654566666 44 999999999999999999999999999999


Q ss_pred             ccCCc-----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC-CceeEEEEEeecCCcCEEEEEEcCCC
Q 016982           83 QEGSE-----WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE-NNWWVSKLIRKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        83 ~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~  156 (379)
                      +....     ......+.+|...|.+++|+|++++|++++.|+.|++||++.. ........+ .+|...|.+++|+|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~  165 (330)
T 2hes_X           87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL-QEHSQDVKHVIWHPSE  165 (330)
T ss_dssp             C-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE-CCCSSCEEEEEECSSS
T ss_pred             cccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe-ccCCCceEEEEECCCC
Confidence            85421     1223344679999999999999999999999999999999543 222344555 7899999999999999


Q ss_pred             cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC--CCEEEEEcCCCeEEEEECC
Q 016982          157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS--GNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~d~~i~v~d~~  234 (379)
                      ++|++++.|+.|++||+.                ....+++..+.+|...|.+++|+|+  +.+|++++.|++|++||+.
T Consensus       166 ~~l~s~s~D~~i~iW~~~----------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          166 ALLASSSYDDTVRIWKDY----------------DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             SEEEEEETTSCEEEEEEE----------------TTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECC----------------CCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence            999999999999999962                0123677888999999999999998  7789999999999999986


Q ss_pred             CCC-------ceeeeeee-ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccc
Q 016982          235 GPS-------PLAQNVAF-RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEA  306 (379)
Q Consensus       235 ~~~-------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (379)
                      ...       .....+.. |...|.+++|++++.+++++.|+.+++|+.... .|.....                    
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~-~~~~~~~--------------------  288 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG-EWKVFAK--------------------  288 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT-EEEEEEE--------------------
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC-ceEEEec--------------------
Confidence            542       12233333 788999999998887777889999999987543 2332211                    


Q ss_pred             cceeeccccccCccccccccccccccccc-ceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          307 FGKLYGQSKYGVGNDAVESSRTRGGTHVN-CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                            ...+|.. .|++++ |++..  ++++|||||.||.|++|++++
T Consensus       289 ----------------------~~~~h~~~~v~~v~-~~~~~--~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          289 ----------------------RALCHGVYEINVVK-WLELN--GKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ----------------------ESCTTTTSCEEEEE-EC-------CCEEEEETTSEEEEEEC--
T ss_pred             ----------------------cccccccceEEEEE-EecCC--CceEEEEecCCCcEEEEEecc
Confidence                                  1146876 899999 55420  238999999999999999865

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.2e-47  Score=327.51  Aligned_cols=288  Identities=14%  Similarity=0.144  Sum_probs=246.7

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|.+.|++++|+|++++||+|+.||.|++||..++  +....+..|...|.+++|+|++.+|++++.|+.+++|++
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            357899999999999999999999999999999999887  566777888999999999999999999999999999998


Q ss_pred             cCCc----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC--CCc
Q 016982           84 EGSE----WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP--NNV  157 (379)
Q Consensus        84 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~  157 (379)
                      ....    ......+..|...|.+++|+|++..|++++.|++|++||++++.   ....+ .+|...|.+++|+|  +++
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~---~~~~~-~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ---LLQSF-HGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEE-ECCSSCEEEEEECCCSSCC
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe---EEEEE-cCCCCCeEEEEEEeCCCCC
Confidence            6431    11223345789999999999999999999999999999999887   45666 78999999999988  468


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      +|++++.|+.|++||+                  ++++++..+..|...|.+++|+|++.+|++++.|+.|++||++...
T Consensus       212 ~l~sgs~Dg~v~~wd~------------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~  273 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDM------------------RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR  273 (354)
T ss_dssp             EEEEEETTSCEEEEET------------------TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEEeCCCeEEEEEC------------------CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999997                  6788889999999999999999999999999999999999998865


Q ss_pred             ceeeeeeee--cCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccc
Q 016982          238 PLAQNVAFR--DLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQS  314 (379)
Q Consensus       238 ~~~~~~~~~--~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (379)
                      .. ..+..+  ...+.+++|+|+|++|+ ++.|+.+++|+........                                
T Consensus       274 ~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~--------------------------------  320 (354)
T 2pbi_B          274 EV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS--------------------------------  320 (354)
T ss_dssp             EE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE--------------------------------
T ss_pred             EE-EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE--------------------------------
Confidence            33 333322  34688999999999888 5568899999976543211                                


Q ss_pred             cccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          315 KYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                    .+.+|.+.|++++ |++++    ++|+||+.||.|++|+
T Consensus       321 --------------~l~~h~~~v~~l~-~spdg----~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 --------------ILFGHENRVSTLR-VSPDG----TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             --------------EECCCSSCEEEEE-ECTTS----SCEEEEETTSEEEEEC
T ss_pred             --------------EEECCCCcEEEEE-ECCCC----CEEEEEcCCCCEEecC
Confidence                          2257999999999 77766    8999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.4e-47  Score=319.08  Aligned_cols=291  Identities=15%  Similarity=0.118  Sum_probs=243.8

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .++.+|.+.|++++|+|++++|++|+.||.|++||+.++  ..+..+..|..+|.+++|+|++++|++++.|++|++||+
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            457889999999999999999999999999999999987  788889999999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEEEEe
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFLATT  162 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~  162 (379)
                      .+++....+  ..|...|.+++|+|++++|++++.|+.|++||++.+..  ....+ .+|...|.+++|+| ++.+|++|
T Consensus        85 ~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~-~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           85 NTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--LEQTF-EGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             TTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE--EEEEE-CCCCSCEEEEEECTTCTTEEEEE
T ss_pred             CCCcEEEEE--eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc--hhhhh-cccCCcEEEEEECCCCCCEEEEE
Confidence            999865554  67999999999999999999999999999999987642  34445 78999999999999 57899999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCce
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +.|+.|++||+                  ....+...+ ..|...+..+.|+|  ++.+|++++.|+.|++||++++. +
T Consensus       160 s~D~~v~iwd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~  220 (304)
T 2ynn_A          160 CLDRTVKVWSL------------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C  220 (304)
T ss_dssp             ETTSEEEEEET------------------TCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-E
T ss_pred             eCCCeEEEEEC------------------CCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-c
Confidence            99999999997                  333333333 35567789999987  78899999999999999998876 5


Q ss_pred             eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          240 AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      +..+.+|...|..++|+|++.+|+ ++.|+.+++|+.......   .                                 
T Consensus       221 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~---~---------------------------------  264 (304)
T 2ynn_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE---K---------------------------------  264 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE---E---------------------------------
T ss_pred             ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee---e---------------------------------
Confidence            588889999999999999999887 667899999997654321   1                                 


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                .+..|...+.+++++ +++  ...++++|+.|| +.+|++.+
T Consensus       265 ----------~~~~~~~~~~~~~~~-~~~--~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          265 ----------TLNVGLERSWCIATH-PTG--RKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             ----------EECCSSSSEEEEEEC-TTC--GGGCEEEEETTE-EEEEECC-
T ss_pred             ----------eccCCCccEEEEEEC-CCC--CceEEEEecCCc-eEEEEecc
Confidence                      124688899999954 433  123677777665 77777765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.4e-48  Score=336.07  Aligned_cols=299  Identities=14%  Similarity=0.196  Sum_probs=247.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.++|++++|+|++++|++|+.||+|++||+.++  +....+..|...|.+++|+|++++|++++.|+.+++|++.
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            47899999999999999999999999999999999887  7788899999999999999999999999999999999987


Q ss_pred             CCc-----eeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEE----eecCCcCEEEEEEcC
Q 016982           85 GSE-----WVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLI----RKRHDSSVTSVAWHP  154 (379)
Q Consensus        85 ~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p  154 (379)
                      +..     ......+.+|.+.+.++.|+|+ +..|++++.|+.|++||+.++..   ...+    ..+|...|.+++|+|
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR---ISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE---EEEECCCSSSSCCSCEEEEEECS
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE---EEEeecccCCCCccCeEEEEeec
Confidence            532     1112234678999999999996 46799999999999999998773   2222    146889999999987


Q ss_pred             -CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          155 -NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       155 -~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                       ++++|++|+.|+.|++||+.                 .....+..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~-----------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~  278 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLR-----------------ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM  278 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETT-----------------TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred             CCCCEEEEEECCCeEEEEECC-----------------CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence             78999999999999999972                 345677888999999999999999999999999999999999


Q ss_pred             CCCCceeeeeeeec-------CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccc
Q 016982          234 VGPSPLAQNVAFRD-------LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSE  305 (379)
Q Consensus       234 ~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (379)
                      +++... ..+..+.       ..+++++|+|+|++|+ ++.|+.+++|+...........                    
T Consensus       279 ~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~--------------------  337 (380)
T 3iz6_a          279 RTGHQL-QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG--------------------  337 (380)
T ss_dssp             TTTEEE-EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC--------------------
T ss_pred             CCCcEE-EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe--------------------
Confidence            987643 4443322       2489999999999888 5578899999876543211110                    


Q ss_pred             ccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982          306 AFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED  373 (379)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~  373 (379)
                                            ....+|.+.|++++ |++++    .+|+|||.||.|++|++...+.
T Consensus       338 ----------------------~~~~~h~~~v~~l~-~s~dg----~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          338 ----------------------TLQNSHEGRISCLG-LSSDG----SALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             ----------------------CSCSSCCCCCCEEE-ECSSS----SEEEEECTTSCEEEEECCSSSS
T ss_pred             ----------------------cccCCCCCceEEEE-ECCCC----CEEEEeeCCCCEEEEecCCCcc
Confidence                                  01257999999999 77766    8999999999999999987643

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-47  Score=325.72  Aligned_cols=291  Identities=14%  Similarity=0.170  Sum_probs=230.7

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC---------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE---------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR   76 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   76 (379)
                      ...|...|.+++|+|||++|++++ |+++++||....         ..........|...|.+++|+|++ .|++++.||
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg  103 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG  103 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence            345678899999999999999887 677888864311         000111112356689999999985 788999999


Q ss_pred             eEEEEeccCCceeeeE--EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           77 NSYVWNQEGSEWVPTL--VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      +|++||+.+++.....  ...+|...|++++|+|++++|++|+.|+.|++||++++.   ....+ .+|...|.+++|+|
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~---~~~~~-~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV---VLSSY-RAHAAQVTCVAASP  179 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEE-CCCSSCEEEEEECS
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc---EEEEE-cCcCCceEEEEecC
Confidence            9999999988754433  345799999999999999999999999999999999876   45666 88999999999999


Q ss_pred             CC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee--cCCcceEEEEECC-CCCEEEEEcCCCeEEE
Q 016982          155 NN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD--LSFSWAFGVKWSP-SGNTLAYVGHNSMIYF  230 (379)
Q Consensus       155 ~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v  230 (379)
                      ++ .+|++++.|+.|++||+                  +++++...+.  .+...+.+++|+| ++++|++|+.|+.|++
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~  241 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDT------------------RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL  241 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEET------------------TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             CCCCceeeeccccccccccc------------------cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEE
Confidence            88 57899999999999997                  5566666653  3455789999999 4678899999999999


Q ss_pred             EECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccc
Q 016982          231 VDDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFG  308 (379)
Q Consensus       231 ~d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (379)
                      ||+++++. +..+.+|...|++++|+|++ ++|+ ++.|+.+++|+.....   +.                        
T Consensus       242 wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~------------------------  293 (344)
T 4gqb_B          242 VDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LF------------------------  293 (344)
T ss_dssp             EESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EE------------------------
T ss_pred             EECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EE------------------------
Confidence            99998764 57888999999999999997 5666 6788999999865432   11                        


Q ss_pred             eeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982          309 KLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                                          .+.+|.+.|++++ |++++   ..+|+|||.||+|++|++.+..
T Consensus       294 --------------------~~~~H~~~V~~v~-~sp~~---~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          294 --------------------RSQAHRDFVRDAT-WSPLN---HSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             --------------------EECCCSSCEEEEE-ECSSS---TTEEEEEETTSCEEEEECCC--
T ss_pred             --------------------EEcCCCCCEEEEE-EeCCC---CeEEEEEcCCCeEEEEECCCCC
Confidence                                1157999999999 77665   2578899999999999998754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.8e-46  Score=318.24  Aligned_cols=302  Identities=14%  Similarity=0.143  Sum_probs=249.8

Q ss_pred             ceeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEecCCc---eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982            5 AVHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLIQEK---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      +|.+|.+.|++++|+|+ +++||+|+.|++|+|||+.+.+   ..+...+.+|...|.+++|+|++++|++++.|+.|++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            47899999999999997 6899999999999999997642   3567888999999999999999999999999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC--cE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN--VF  158 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~  158 (379)
                      |+..........  ..+...+..+.+++++++|++++.|+.+++||......   .......|...+..++|++++  .+
T Consensus       113 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          113 WDLTTGTTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EETTTTEEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             Eeecccceeeee--cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcE
Confidence            999988754444  55778889999999999999999999999999876542   222226788999999999875  67


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      +++++.|+.|++||+                  ..++++..+.+|...|++++|+|++++|++++.|+.|++||+++.+.
T Consensus       188 ~~s~~~d~~i~i~d~------------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~  249 (340)
T 4aow_A          188 IVSCGWDKLVKVWNL------------------ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH  249 (340)
T ss_dssp             EEEEETTSCEEEEET------------------TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE
T ss_pred             EEEEcCCCEEEEEEC------------------CCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCce
Confidence            889999999999997                  67788888999999999999999999999999999999999988764


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                       +..+. +...+..++|+|++.+++++.|+.+++|+.........   +....                           
T Consensus       250 -~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~---~~~~~---------------------------  297 (340)
T 4aow_A          250 -LYTLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDE---LKQEV---------------------------  297 (340)
T ss_dssp             -EEEEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEE---ECCC----------------------------
T ss_pred             -eeeec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEe---ccccc---------------------------
Confidence             35554 45689999999999999999999999999775432211   11100                           


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED  373 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~  373 (379)
                             ......+|...|++++ |++++    ++|+||+.||.|+|||+.+|+.
T Consensus       298 -------~~~~~~~h~~~v~~l~-~s~dg----~~l~sgs~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          298 -------ISTSSKAEPPQCTSLA-WSADG----QTLFAGYTDNLVRVWQVTIGTR  340 (340)
T ss_dssp             -------------CCCCCEEEEE-ECTTS----SEEEEEETTSCEEEEEEEC---
T ss_pred             -------eeeeccCCCCCEEEEE-ECCCC----CEEEEEeCCCEEEEEeCCCcCC
Confidence                   0002257999999999 77666    8999999999999999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-46  Score=324.13  Aligned_cols=289  Identities=17%  Similarity=0.206  Sum_probs=237.3

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC------------------CceEEEEEcCCCCE
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD------------------QIVSGIDWSVRSNR   68 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~   68 (379)
                      .+|.+.|++++|+|+|++||+|+ ++.+++|++.++  +.+..+..|.                  ..|.+++|+|++++
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            46999999999999999999986 689999999887  4555555443                  24999999999999


Q ss_pred             EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           69 IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        69 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      |++++.|+.|++||+.+++....+  .+|...|.+++|+|++++|++++.|+.|++||++++.   ....+  .+...+.
T Consensus       138 l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~---~~~~~--~~~~~v~  210 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTL--SIEDGVT  210 (393)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEE--ECSSCEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEE--ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe---eEEEE--EcCCCcE
Confidence            999999999999999998755544  7899999999999999999999999999999998876   33333  4677899


Q ss_pred             EEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-------ecCCcceEEEEECCCCCEEE
Q 016982          149 SVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-------DLSFSWAFGVKWSPSGNTLA  220 (379)
Q Consensus       149 ~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~l~  220 (379)
                      +++|+| ++++|++++.|+.|++||+                  .++..+..+       .+|...|.+++|+|+|++|+
T Consensus       211 ~~~~~~~~~~~l~~~s~d~~v~iwd~------------------~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          211 TVAVSPGDGKYIAAGSLDRAVRVWDS------------------ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEET------------------TTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEEC------------------CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence            999999 8899999999999999997                  445555444       57888999999999999999


Q ss_pred             EEcCCCeEEEEECCCCC-----------ceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEec
Q 016982          221 YVGHNSMIYFVDDVGPS-----------PLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLD  288 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~-----------~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~  288 (379)
                      +++.|+.|++||++...           .+...+.+|...|.+++|+|++++|+ ++.|+.+++|+........      
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~------  346 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL------  346 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE------
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE------
Confidence            99999999999987632           23345667889999999999999887 6678899999876543221      


Q ss_pred             ccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccC--CcccceEEEeecCceEEEE
Q 016982          289 ERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAG--SSRITRFTTSGLDGKIVTW  366 (379)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~~~~~l~t~~~Dg~v~iW  366 (379)
                                                              .+.+|.+.|.+++ +.++.  .|++++|||||.||+|++|
T Consensus       347 ----------------------------------------~l~~h~~~v~~v~-~~~~~~~~p~~~~l~sgs~Dg~i~iW  385 (393)
T 1erj_A          347 ----------------------------------------MLQGHRNSVISVA-VANGSSLGPEYNVFATGSGDCKARIW  385 (393)
T ss_dssp             ----------------------------------------EEECCSSCEEEEE-ECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred             ----------------------------------------EECCCCCCEEEEE-ecCCcCcCCCCCEEEEECCCCcEEEC
Confidence                                                    2257999999999 54421  2456899999999999999


Q ss_pred             eCCC
Q 016982          367 DLES  370 (379)
Q Consensus       367 ~~~~  370 (379)
                      ++..
T Consensus       386 ~~~~  389 (393)
T 1erj_A          386 KYKK  389 (393)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            9865

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-47  Score=328.90  Aligned_cols=290  Identities=17%  Similarity=0.230  Sum_probs=227.5

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEec------CCeEEEEEecCCce--EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPN------NNEVHIYKLIQEKW--EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN   77 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   77 (379)
                      ...|...|++++|||||++||+|+.      |+.|++|+..++..  .......+|...|.+++|+|+++ +++++.|++
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~  116 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA  116 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence            4568999999999999999999987      77899998766421  11233456888999999999975 556788999


Q ss_pred             EEEEeccCCceee--eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           78 SYVWNQEGSEWVP--TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        78 i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      |++||+.+++...  .+...+|...|.+++|+|++++|++++.|+.|++||++++.   ....+ ..|...|.+++|+|+
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~---~~~~~-~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA---VLKSY-NAHSSEVNCVAACPG  192 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE---EEEEE-CCCSSCEEEEEECTT
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc---EEEEE-cCCCCCEEEEEEccC
Confidence            9999998876433  23345789999999999999999999999999999998876   45566 789999999999998


Q ss_pred             C-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe--ecCCcceEEEEECCC-CCEEEEEcCCCeEEEE
Q 016982          156 N-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFV  231 (379)
Q Consensus       156 ~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~  231 (379)
                      + .++++++.|+.|++||+                  ++++++..+  ..+...+.+++|+|+ +.+|++++.|+.|++|
T Consensus       193 ~~~~~~s~~~dg~v~~wd~------------------~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w  254 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWDT------------------RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV  254 (357)
T ss_dssp             CSSCEEEEETTSCEEECCT------------------TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred             CCceeeeeccCCceEEEEC------------------CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence            7 57899999999999997                  344444333  345677999999997 5688899999999999


Q ss_pred             ECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccce
Q 016982          232 DDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGK  309 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (379)
                      |+++++. ...+..|...|++++|+|++ ++|+ ++.|+.+++|+.+...   ...                        
T Consensus       255 d~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~---~~~------------------------  306 (357)
T 4g56_B          255 NIKNPDS-AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE---VFR------------------------  306 (357)
T ss_dssp             ESSCGGG-CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE---EEE------------------------
T ss_pred             ECCCCcE-eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc---EeE------------------------
Confidence            9998764 47888899999999999987 5676 6678999999876532   111                        


Q ss_pred             eeccccccCcccccccccccccccccceeeeeeecc-cCCcccceEEEeecCceEEEEeCCCc
Q 016982          310 LYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLRE-AGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                          ..+|.+.|++|+ |+| ++    .+|+|||.||+|++|++.+.
T Consensus       307 --------------------~~~H~~~V~~va-fsP~d~----~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          307 --------------------DLSHRDFVTGVA-WSPLDH----SKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             --------------------ECCCSSCEEEEE-ECSSST----TEEEEEETTSCEEEEECC--
T ss_pred             --------------------ECCCCCCEEEEE-EeCCCC----CEEEEEcCCCeEEEEECCCC
Confidence                                136999999999 665 55    89999999999999999763

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.6e-46  Score=342.04  Aligned_cols=315  Identities=13%  Similarity=0.168  Sum_probs=244.8

Q ss_pred             ceeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            5 AVHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .+.+|...|++++|+|++. +|++|+.|+.|++||..+.  +....+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~--~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF--KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC--eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            4678999999999999987 6999999999999998776  778889999999999999999999999999999999999


Q ss_pred             cCCceeeeEEe-----ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee------------------------
Q 016982           84 EGSEWVPTLVI-----LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW------------------------  134 (379)
Q Consensus        84 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~------------------------  134 (379)
                      .+++....+..     ..|...|.+++|+|++++|++++.|++|++||+.+++...                        
T Consensus       220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  299 (611)
T 1nr0_A          220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS  299 (611)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred             CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence            98875554421     1689999999999999999999999999999987654211                        


Q ss_pred             ----------------EEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCC-----------
Q 016982          135 ----------------VSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGT-----------  187 (379)
Q Consensus       135 ----------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----------  187 (379)
                                      ....+ .+|...|.+++|+|++++|++++.|+.|++||+..............           
T Consensus       300 ~s~d~~i~~~~~~~~~~~~~~-~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~  378 (611)
T 1nr0_A          300 ISANGFINFVNPELGSIDQVR-YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK  378 (611)
T ss_dssp             EETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             EeCCCcEEEEeCCCCCcceEE-cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence                            11222 57899999999999999999999999999999853221100000000           


Q ss_pred             ----------------------cc------C----------Cccc----------------ceEEEeecCCcceEEEEEC
Q 016982          188 ----------------------SS------D----------TKFG----------------EQILQLDLSFSWAFGVKWS  213 (379)
Q Consensus       188 ----------------------~~------~----------~~~~----------------~~~~~~~~~~~~v~~~~~s  213 (379)
                                            ..      .          ...+                ..+..+. |...+.+++|+
T Consensus       379 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~-~~~~v~~va~s  457 (611)
T 1nr0_A          379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVP-ISYNSSCVALS  457 (611)
T ss_dssp             SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEE-CSSCEEEEEEC
T ss_pred             CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeee-cCCCceEEEEe
Confidence                                  00      0          0000                0011121 45568899999


Q ss_pred             CCCCEEEEEcCCCeEEEEECCCCCc-eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982          214 PSGNTLAYVGHNSMIYFVDDVGPSP-LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERK  291 (379)
Q Consensus       214 p~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~  291 (379)
                      |+|++|++++.|+.|++||+.+... .... ..|...|++++|+|+|++|+ ++.|+.+++|+....+  +...      
T Consensus       458 pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~------  528 (611)
T 1nr0_A          458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAH------  528 (611)
T ss_dssp             TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESC------
T ss_pred             CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceee------
Confidence            9999999999999999999876532 1233 57889999999999999998 6678899999876532  1100      


Q ss_pred             cCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                      .                   ..+.+|...|++++ |+|++    ++|||||.|++|++|++.++
T Consensus       529 ----------------~-------------------~~~~~H~~~V~~v~-fspdg----~~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          529 ----------------T-------------------NSWTFHTAKVACVS-WSPDN----VRLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             ----------------C-------------------CCCCCCSSCEEEEE-ECTTS----SEEEEEETTSCEEEEETTCT
T ss_pred             ----------------e-------------------eeeeecccceeEEE-ECCCC----CEEEEEECCCcEEEEECCCc
Confidence                            0                   01235999999999 87776    99999999999999999875


Q ss_pred             c
Q 016982          372 E  372 (379)
Q Consensus       372 ~  372 (379)
                      +
T Consensus       569 ~  569 (611)
T 1nr0_A          569 S  569 (611)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.3e-45  Score=308.57  Aligned_cols=288  Identities=17%  Similarity=0.250  Sum_probs=243.4

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|..+|++++|+|++++|++|+.||.|++|+..++  +....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            346789999999999999999999999999999999887  567788999999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .+++....+  ..|...|.+++|+|++++|++++.|+.|++||+++..   ....+ ..|..+|.+++|+|++++|++++
T Consensus        95 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
T 4ery_A           95 SSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK---CLKTL-PAHSDPVSAVHFNRDGSLIVSSS  168 (312)
T ss_dssp             TTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---EEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE---EEEEe-cCCCCcEEEEEEcCCCCEEEEEe
Confidence            999866555  6789999999999999999999999999999998876   45555 78999999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      .|+.|++||+                  ..++.+..+ ..+...+..++|+|++++|++++.|+.|++||+.+++ ....
T Consensus       169 ~d~~i~~wd~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~  229 (312)
T 4ery_A          169 YDGLCRIWDT------------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK-CLKT  229 (312)
T ss_dssp             TTSCEEEEET------------------TTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEE
T ss_pred             CCCcEEEEEC------------------CCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEE
Confidence            9999999997                  556666555 3456679999999999999999999999999998876 3466


Q ss_pred             eeeecCCeee--EEEe-cCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          243 VAFRDLPLRD--VLFV-SEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       243 ~~~~~~~i~~--~~~s-~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      +..|......  ..++ +++.+|+ ++.|+.+++|+........                                    
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~------------------------------------  273 (312)
T 4ery_A          230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ------------------------------------  273 (312)
T ss_dssp             ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE------------------------------------
T ss_pred             EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh------------------------------------
Confidence            6666554332  3444 5677777 5678899999977643221                                    


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEee--cCceEEEEeCC
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG--LDGKIVTWDLE  369 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~--~Dg~v~iW~~~  369 (379)
                                .+.+|.+.|.+++ +.+++    ++|++++  .|+.|++|+..
T Consensus       274 ----------~~~~h~~~v~~~~-~~p~~----~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          274 ----------KLQGHTDVVISTA-CHPTE----NIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ----------EECCCSSCEEEEE-ECSSS----SEEEEEECTTTCCEEEEECC
T ss_pred             ----------hhhccCCcEEEEe-ecCcC----CceEEEEccCCccEEEecCC
Confidence                      2257999999999 66555    8999987  69999999964

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-45  Score=337.27  Aligned_cols=329  Identities=11%  Similarity=0.144  Sum_probs=250.7

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      ..+.+.+.+++|+|+|++||+++ ++.|++|++.++  +....+.+|...|++++|+|+|++|++++.|++|+|||+.++
T Consensus        15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~   91 (611)
T 1nr0_A           15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   91 (611)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCc--ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence            34578899999999999999987 569999999876  567788999999999999999999999999999999999766


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-EEEE
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-FLAT  161 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~  161 (379)
                      +......+..|.+.|.+++|+|+++.|++++.+    +.|++||.  +.   ....+ .+|...|.+++|+|++. .|++
T Consensus        92 ~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~---~~~~l-~gh~~~v~~v~f~p~~~~~l~s  165 (611)
T 1nr0_A           92 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GT---SNGNL-TGQARAMNSVDFKPSRPFRIIS  165 (611)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CC---BCBCC-CCCSSCEEEEEECSSSSCEEEE
T ss_pred             cceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CC---Cccee-cCCCCCceEEEECCCCCeEEEE
Confidence            544444556789999999999999999998865    36777763  33   23344 78999999999999986 6999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      ++.|+.|++||.                  ...++...+.+|...|.+++|+|+|++|++++.|+.|++||+.++.. ..
T Consensus       166 ~s~D~~v~lwd~------------------~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-~~  226 (611)
T 1nr0_A          166 GSDDNTVAIFEG------------------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-TG  226 (611)
T ss_dssp             EETTSCEEEEET------------------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EE
T ss_pred             EeCCCeEEEEEC------------------CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-ee
Confidence            999999999996                  56778888999999999999999999999999999999999987764 34


Q ss_pred             eee-------eecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCC-----CCCccCCCcccccc
Q 016982          242 NVA-------FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSS-----SGPKYGSQFSEAFG  308 (379)
Q Consensus       242 ~~~-------~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  308 (379)
                      .+.       +|...|.+++|+|+|++|+ ++.|+.+++|+....................     ..............
T Consensus       227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence            442       6889999999999999887 6778999999987643222211000000000     00000000000000


Q ss_pred             eeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          309 KLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                      +++ ...       .......+.+|...|++++ |++++    ++|+|++.||.|++||+.+++....
T Consensus       307 ~~~-~~~-------~~~~~~~~~gh~~~v~~l~-~spdg----~~l~s~s~D~~v~~Wd~~~~~~~~~  361 (611)
T 1nr0_A          307 NFV-NPE-------LGSIDQVRYGHNKAITALS-SSADG----KTLFSADAEGHINSWDISTGISNRV  361 (611)
T ss_dssp             EEE-ETT-------TTEEEEEECCCSSCEEEEE-ECTTS----SEEEEEETTSCEEEEETTTCCEEEC
T ss_pred             EEE-eCC-------CCCcceEEcCCCCCEEEEE-EeCCC----CEEEEEeCCCcEEEEECCCCceeee
Confidence            000 000       0011224578999999999 77666    8999999999999999998766543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-43  Score=307.14  Aligned_cols=311  Identities=18%  Similarity=0.201  Sum_probs=246.1

Q ss_pred             ccceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            3 AIAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         3 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      ...+.+|.+.|++++|+|++++|++++.||.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            4568899999999999999999999999999999999887  68888999999999999999999999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CeEEEEEeecCCceeE--------EEEEeecCCc--CE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-----KTVCICYYEQENNWWV--------SKLIRKRHDS--SV  147 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~--------~~~~~~~~~~--~v  147 (379)
                      +.+++....+.   +...+.+++|+|+++++++++.+     +.|++||+........        ...+ ..|..  .+
T Consensus       103 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  178 (369)
T 3zwl_B          103 VSNGQCVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAA  178 (369)
T ss_dssp             TTTCCEEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCE
T ss_pred             CCCCcEEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccce
Confidence            99998666553   78899999999999999999998     9999999987652111        1222 34555  89


Q ss_pred             EEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcc-cceEEEeecCCcceEEEEECCCCCEEEEEcCCC
Q 016982          148 TSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKF-GEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS  226 (379)
Q Consensus       148 ~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~  226 (379)
                      .+++|+|++++|++++.||.|++||+                  .. ...+..+..|...|.+++|+|++++|++++.|+
T Consensus       179 ~~~~~~~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  240 (369)
T 3zwl_B          179 TVAGWSTKGKYIIAGHKDGKISKYDV------------------SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT  240 (369)
T ss_dssp             EEEEECGGGCEEEEEETTSEEEEEET------------------TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEcCCCCEEEEEcCCCEEEEEEC------------------CCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCc
Confidence            99999999999999999999999997                  34 677888888999999999999999999999999


Q ss_pred             eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccc
Q 016982          227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSE  305 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (379)
                      .|++||+.+... ...+. +..++..++|+|++++++ ++.++...++.......-......+....             
T Consensus       241 ~i~v~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------------  305 (369)
T 3zwl_B          241 NSFLVDVSTLQV-LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-------------  305 (369)
T ss_dssp             EEEEEETTTCCE-EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-------------
T ss_pred             eEEEEECCCCce-eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-------------
Confidence            999999988763 35554 678899999999999888 44555433333221110000010000000             


Q ss_pred             ccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          306 AFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                        .                 ....+.+|...|++++ |++++    ++|+|++.||.|++|+++++.....
T Consensus       306 --~-----------------~~~~~~~~~~~v~~~~-~s~~~----~~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          306 --E-----------------EIGRVQGHFGPLNTVA-ISPQG----TSYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             --C-----------------EEEEEECCSSCEEEEE-ECTTS----SEEEEEETTSEEEEEEECHHHHTCC
T ss_pred             --c-----------------chhheecccCcEEEEE-ECCCC----CEEEEEcCCCeEEEEECccccchhH
Confidence              0                 0012357999999999 77666    8999999999999999988665443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-44  Score=329.30  Aligned_cols=279  Identities=20%  Similarity=0.327  Sum_probs=242.6

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|+|++++|++++.|+.|++||....   .+..+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus       298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~  374 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN  374 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC
Confidence            45679999999999999999999999999999998764   566788999999999999999999999999999999965


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                       ++....  +..|...|.+++|+|++++|++++.|+.|++||... +   ....+ ..|...|.+++|+|++++|++++.
T Consensus       375 -~~~~~~--~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~---~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~  446 (577)
T 2ymu_A          375 -GQLLQT--LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q---LLQTL-TGHSSSVWGVAFSPDDQTIASASD  446 (577)
T ss_dssp             -CCEEEE--EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-C---EEEEE-ECCSSCEEEEEECTTSSEEEEEET
T ss_pred             -CCEEEE--ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-C---EEEEe-cCCCCCeEEEEECCCCCEEEEEcC
Confidence             443343  367899999999999999999999999999999543 2   35555 789999999999999999999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      |+.|++||.                   .++.+..+..|...|.+++|+|++++|++++.|+.|++||.. + ++++.+.
T Consensus       447 d~~v~~w~~-------------------~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~-~~~~~~~  505 (577)
T 2ymu_A          447 DKTVKLWNR-------------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLT  505 (577)
T ss_dssp             TSEEEEEET-------------------TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S-CEEEEEE
T ss_pred             CCEEEEEEC-------------------CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C-CEEEEEe
Confidence            999999984                   467788889999999999999999999999999999999954 3 3568888


Q ss_pred             eecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccc
Q 016982          245 FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAV  323 (379)
Q Consensus       245 ~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (379)
                      +|...|++++|+|+|++|+ ++.|+.+++|+.+..    ...                                      
T Consensus       506 ~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~----~~~--------------------------------------  543 (577)
T 2ymu_A          506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQ--------------------------------------  543 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSC----EEE--------------------------------------
T ss_pred             CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCC----EEE--------------------------------------
Confidence            9999999999999999888 667889999985421    111                                      


Q ss_pred             ccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          324 ESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       324 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                           .+.+|.+.|++++ |++++    ++|+|+|.||+|++||
T Consensus       544 -----~~~~h~~~v~~~~-fs~dg----~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          544 -----TLTGHSSSVWGVA-FSPDG----QTIASASSDKTVKLWN  577 (577)
T ss_dssp             -----EEECCSSCEEEEE-ECTTS----SCEEEEETTSCEEEEC
T ss_pred             -----EEcCCCCCEEEEE-EcCCC----CEEEEEeCCCEEEEeC
Confidence                 2258999999999 77776    8999999999999997

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-44  Score=336.86  Aligned_cols=311  Identities=15%  Similarity=0.188  Sum_probs=245.3

Q ss_pred             ceeccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCc---eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982            5 AVHQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEK---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      .+.+|.+.|++++|+|++ ++|++|+.|+.|++|++.+..   ......+.+|...|.+++|+|++++|++++.|++|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            577899999999999865 799999999999999997532   2456788999999999999999999999999999999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC--cE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN--VF  158 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~  158 (379)
                      ||+.++.....+  ..|...|.+++|+|++++|++++.|+.|++||............. .+|...|.+++|+|++  ..
T Consensus       457 wd~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          457 WDLAAGVSTRRF--VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG-EGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EETTTTEEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSST-TSCSSCEEEEEECSCSSSCE
T ss_pred             EECCCCcceeEE--eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCC-CCCCCcEEEEEEeCCCCcce
Confidence            999998865554  689999999999999999999999999999997654311111111 4688899999999987  68


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      |++++.|+.|++||+                  ...++...+.+|...|++++|+|++++|++++.|+.|++||+.+++.
T Consensus       534 l~s~s~d~~v~vwd~------------------~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          534 IVSASWDKTVKVWNL------------------SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             EEEEETTSCEEEEET------------------TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred             EEEEeCCCeEEEEEC------------------CCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence            999999999999997                  56778888999999999999999999999999999999999988764


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      + ..+. +...+.+++|+|++.+|+++.++.+++|+.........   +..........            .   ...+ 
T Consensus       596 ~-~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~~------------~---~~~~-  654 (694)
T 3dm0_A          596 L-YSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVED---LKVDLKAEAEK------------A---DNSG-  654 (694)
T ss_dssp             E-ECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEE---ECCCCC--------------------------
T ss_pred             E-EEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhh---hcccccccccc------------c---cccc-
Confidence            3 4444 45679999999999999999999999999876542222   11100000000            0   0000 


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                              ......|.-.+++++ |++++    ++|+||+.||.|++|++..
T Consensus       655 --------~~~~~~~~~~~~~l~-~spdg----~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          655 --------PAATKRKVIYCTSLN-WSADG----STLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             --------------CCCCEEEEE-ECTTS----SEEEEEETTSEEEEEEC--
T ss_pred             --------cccCCceeEEeeeEE-EcCCC----CEEEEEcCCCeEEEEeccC
Confidence                    000112334578888 77766    9999999999999999853

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.7e-43  Score=297.31  Aligned_cols=258  Identities=13%  Similarity=0.142  Sum_probs=220.6

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      +...++.+|.+.|.+++|+|++++|++++.|++|++||+.++.....+  ..|..+|.+++|+|++++|++++.|+.|++
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v   81 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI--QVTETPVRAGKFIARKNWIIVGSDDFRIRV   81 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE--ECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe--eccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence            456778899999999999999999999999999999999998865555  668899999999999999999999999999


Q ss_pred             EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc-ceEEEeecC
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG-EQILQLDLS  203 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  203 (379)
                      ||+++++   ....+ .+|...|.+++|+|++++|++++.|+.|++||+                  ..+ .....+.+|
T Consensus        82 wd~~~~~---~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~------------------~~~~~~~~~~~~h  139 (304)
T 2ynn_A           82 FNYNTGE---KVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW------------------ENNWALEQTFEGH  139 (304)
T ss_dssp             EETTTCC---EEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEG------------------GGTTEEEEEECCC
T ss_pred             EECCCCc---EEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEEC------------------CCCcchhhhhccc
Confidence            9999887   45556 789999999999999999999999999999997                  333 455678899


Q ss_pred             CcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEec--CCcEEE-EEeCCCeEEEEecCCC
Q 016982          204 FSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS--EKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       204 ~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      ...|.+++|+| ++.+|++++.|+.|++||+............+...+..+.|+|  ++.+|+ ++.|+.+++|+.....
T Consensus       140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~  219 (304)
T 2ynn_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (304)
T ss_dssp             CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc
Confidence            99999999999 6889999999999999999887655444455667899999987  666776 7789999999976543


Q ss_pred             cEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeec
Q 016982          280 IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGL  359 (379)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~  359 (379)
                      ...                                              .+.+|...|.+++ |++++    ++|+||+.
T Consensus       220 ~~~----------------------------------------------~~~~h~~~v~~~~-~~p~~----~~l~s~s~  248 (304)
T 2ynn_A          220 CVA----------------------------------------------TLEGHMSNVSFAV-FHPTL----PIIISGSE  248 (304)
T ss_dssp             EEE----------------------------------------------EEECCSSCEEEEE-ECSSS----SEEEEEET
T ss_pred             cce----------------------------------------------eeCCCCCCEEEEE-ECCCC----CEEEEEcC
Confidence            111                                              2257999999999 76665    89999999


Q ss_pred             CceEEEEeCCCccccccC
Q 016982          360 DGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       360 Dg~v~iW~~~~~~~~~~~  377 (379)
                      ||.|++||+.+++.++.+
T Consensus       249 Dg~i~iWd~~~~~~~~~~  266 (304)
T 2ynn_A          249 DGTLKIWNSSTYKVEKTL  266 (304)
T ss_dssp             TSCEEEEETTTCCEEEEE
T ss_pred             CCeEEEEECCCCceeeec
Confidence            999999999998877654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-43  Score=296.16  Aligned_cols=267  Identities=17%  Similarity=0.256  Sum_probs=220.5

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC--CCEEEEEeCCCeEEEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVW   81 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw   81 (379)
                      ..+.+|.+.|++++|+|+|++||+|+.|+.|+||++.+...+.+.++.+|..+|.+++|+|+  +++|++++.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            35678999999999999999999999999999999986544677889999999999999864  8899999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC----
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN----  155 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----  155 (379)
                      |+.+++.........|...|.+++|+|+  +.+|++++.|+.|++||++...... ...+ .+|...|.+++|+|+    
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~-~~~~-~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS-PIII-DAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-CEEE-ECCSSCEEEEEECCCC---
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-eeee-ecccCccceEeecCCcccc
Confidence            9998764444555678999999999997  8999999999999999998764211 2334 789999999999997    


Q ss_pred             ---------CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC---CEEEEEc
Q 016982          156 ---------NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG---NTLAYVG  223 (379)
Q Consensus       156 ---------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~  223 (379)
                               +++|++++.|+.|++||+...              .........+.+|...|.+++|+|++   .+|++++
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~--------------~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSD--------------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETT--------------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCC--------------CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence                     479999999999999997200              01122566788999999999999984   8999999


Q ss_pred             CCCeEEEEECCCCCc--eeeee--eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEE
Q 016982          224 HNSMIYFVDDVGPSP--LAQNV--AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKF  286 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~--~~~~~--~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~  286 (379)
                      .|++|++||+.....  ....+  ..|...|.+++|+|+|++|+ ++.|+.+++|+....+.|.....
T Consensus       227 ~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~~~  294 (297)
T 2pm7_B          227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE  294 (297)
T ss_dssp             TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC--
T ss_pred             CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEeccc
Confidence            999999999876431  11223  35678899999999999888 67889999999987788876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.2e-43  Score=321.29  Aligned_cols=287  Identities=20%  Similarity=0.329  Sum_probs=247.5

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|+|++++|++++.|+.|++|+...   +....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       257 ~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~  333 (577)
T 2ymu_A          257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN  333 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC---cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            4567899999999999999999999999999999765   4677889999999999999999999999999999999987


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ....   .....|...+.+++|+|+++++++++.|+.+++|+... +   ....+ ..|...|.+++|+|++++|++++.
T Consensus       334 ~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~---~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~  405 (577)
T 2ymu_A          334 GQHL---QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-Q---LLQTL-TGHSSSVRGVAFSPDGQTIASASD  405 (577)
T ss_dssp             SCEE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-C---EEEEE-ECCSSCEEEEEECTTSSCEEEEET
T ss_pred             CCee---EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-C---EEEEe-cCCCCCeEEEEECCCCCEEEEEeC
Confidence            6642   23367889999999999999999999999999999543 2   35555 789999999999999999999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      |+.|++||.                   .++.+..+..|...|++++|+|++++|++++.|+.|++||...  +.+..+.
T Consensus       406 d~~v~~~~~-------------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~  464 (577)
T 2ymu_A          406 DKTVKLWNR-------------------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLT  464 (577)
T ss_dssp             TSEEEEECT-------------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEE
T ss_pred             CCEEEEEeC-------------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEc
Confidence            999999984                   4677888899999999999999999999999999999999643  3557888


Q ss_pred             eecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccc
Q 016982          245 FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAV  323 (379)
Q Consensus       245 ~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (379)
                      .|..+|.+++|+|++++|+ ++.|+.+++|+.+..    ...                                      
T Consensus       465 ~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~----~~~--------------------------------------  502 (577)
T 2ymu_A          465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQ--------------------------------------  502 (577)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSC----EEE--------------------------------------
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC----EEE--------------------------------------
Confidence            8999999999999999988 567889999985431    111                                      


Q ss_pred             ccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          324 ESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       324 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                           .+.+|...|++++ |++++    ++|||++.||.|++||. +++.++.
T Consensus       503 -----~~~~h~~~v~~l~-~s~dg----~~l~s~~~dg~v~lwd~-~~~~~~~  544 (577)
T 2ymu_A          503 -----TLTGHSSSVRGVA-FSPDG----QTIASASDDKTVKLWNR-NGQLLQT  544 (577)
T ss_dssp             -----EEECCSSCEEEEE-ECTTS----SCEEEEETTSEEEEECT-TSCEEEE
T ss_pred             -----EEeCCCCCEEEEE-EcCCC----CEEEEEECcCEEEEEeC-CCCEEEE
Confidence                 1257999999999 77766    89999999999999996 5555543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-44  Score=319.17  Aligned_cols=298  Identities=15%  Similarity=0.124  Sum_probs=225.1

Q ss_pred             eeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEec
Q 016982            6 VHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~   83 (379)
                      ...|...|+|++|+| ++++||+|+.||.|+|||+.+++......+.+|.+.|++|+|+| ++++|++++.|++|++||+
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            356788999999999 56799999999999999998775566677889999999999998 6789999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-EEEEe
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-FLATT  162 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~  162 (379)
                      +++..........+...+.+++|+|++++|++|+.||.|++||++...    ...+ ..|...|.+++|+|++. +|+++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~----~~~~-~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE----LWNL-RMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB----CCCS-BCCSSCEEEEEECTTCSSEEEEE
T ss_pred             cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce----eEEE-ecccceEEeeeecCCCceEEEEe
Confidence            877543333222344567899999999999999999999999987654    3344 68999999999999875 78899


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      +.|+.|++||+...               .....+.....|...|++++|+|+|++|++++.|+.|++||+.++... ..
T Consensus       270 s~d~~v~iwd~~~~---------------~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~-~~  333 (435)
T 4e54_B          270 SVDQTVKIWDLRQV---------------RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP-LG  333 (435)
T ss_dssp             ETTSBCCEEETTTC---------------CSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE-EE
T ss_pred             cCcceeeEEecccc---------------cccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc-eE
Confidence            99999999997210               011122233568889999999999999999999999999999887644 33


Q ss_pred             eeeecC------CeeeEEEecCCcEEEEEe--CC-----------CeEEEEecCCCcEEEEEEecccccCCCCCccCCCc
Q 016982          243 VAFRDL------PLRDVLFVSEKMVIGVGF--DC-----------NPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQF  303 (379)
Q Consensus       243 ~~~~~~------~i~~~~~s~~~~~l~~~~--d~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (379)
                      +..|..      .+....|+|++.+++++.  ++           .+++|+.........                    
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~--------------------  393 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ--------------------  393 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE--------------------
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE--------------------
Confidence            333321      244567888877766432  22           355555433221110                    


Q ss_pred             ccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccc
Q 016982          304 SEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDL  374 (379)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~  374 (379)
                                               ...+|...|.++..|++++    ++||+|+ |+.|+||++++++..
T Consensus       394 -------------------------l~~~~~~~v~s~~~fspdg----~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          394 -------------------------LYDPESSGISSLNEFNPMG----DTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             -------------------------ECCSSCCCCCCEEEECTTS----SCEEEEC-SSEEEECCCC-----
T ss_pred             -------------------------EeCCCCCcEEEEEEECCCC----CEEEEEc-CCcEEEEECCcCeee
Confidence                                     1246888999986688776    8999876 889999999988654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.2e-44  Score=301.95  Aligned_cols=269  Identities=17%  Similarity=0.282  Sum_probs=220.2

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV--RSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~   82 (379)
                      .+.+|.+.|++++|+|+|++||+|+.|+.|+|||+.+++...+..+.+|..+|.+++|+|  ++++|++++.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            457899999999999999999999999999999998875456788999999999999986  488999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC-----
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN-----  155 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----  155 (379)
                      +++++......+..|...|.+++|+|+  +.+|++++.|+.|++||++....+.....+ ..|...+.+++|+|+     
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-NAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT-TSSSSCBCCCEECCCCCC--
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee-ccccCCcceEEEccccCCcc
Confidence            998754445555779999999999997  789999999999999999876533223333 678899999999997     


Q ss_pred             ------------CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC----CEE
Q 016982          156 ------------NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG----NTL  219 (379)
Q Consensus       156 ------------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l  219 (379)
                                  +++|++++.|+.|++||+..               ....+++..+.+|...|.+++|+|++    ++|
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~---------------~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l  231 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE---------------DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI  231 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECT---------------TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCC---------------CCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence                        46899999999999999720               00124567788999999999999986    889


Q ss_pred             EEEcCCCeEEEEECCCC---CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecc
Q 016982          220 AYVGHNSMIYFVDDVGP---SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDE  289 (379)
Q Consensus       220 ~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~  289 (379)
                      ++++.|++|++||+...   ......+..|...|.+++|+|++++|+ ++.|+.+++|+....+.|.....+..
T Consensus       232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~  305 (316)
T 3bg1_A          232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK  305 (316)
T ss_dssp             EEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC-
T ss_pred             EEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccC
Confidence            99999999999998763   112234566788999999999999887 67899999999987777887765544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.7e-43  Score=305.34  Aligned_cols=294  Identities=13%  Similarity=0.147  Sum_probs=229.3

Q ss_pred             ceeccCcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~   82 (379)
                      .+.+|...|++++|+|++ ++|++|+.||.|++||+.+++......+.+|...|.+++|+| ++++|++++.|+.|++||
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  147 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD  147 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence            456899999999999999 999999999999999999875555555557999999999999 679999999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-EEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-FLAT  161 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~  161 (379)
                      +.+...........+...|.+++|+|++++|++++.|+.|++||++ +.   ....+ ..|...|.+++|+|+++ +|++
T Consensus       148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~---~~~~~-~~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH---EIFKE-KLHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC---EEEEE-ECSSSCEEEEEECSSCTTEEEE
T ss_pred             CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC---EEEEe-ccCCCcEEEEEECCCCCCEEEE
Confidence            9975433222222345789999999999999999999999999984 33   34555 78999999999999998 9999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      ++.|+.|++||+...              .....++..+ .|...|.+++|+| ++++|++++.|+.|++||+++.... 
T Consensus       223 ~~~d~~i~iwd~~~~--------------~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-  286 (383)
T 3ei3_B          223 SSVDATVKLWDLRNI--------------KDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-  286 (383)
T ss_dssp             EETTSEEEEEEGGGC--------------CSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC-
T ss_pred             EeCCCEEEEEeCCCC--------------CcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-
Confidence            999999999997210              0114455555 6889999999999 9999999999999999999887643 


Q ss_pred             eeeeeec-------C----------CeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCc
Q 016982          241 QNVAFRD-------L----------PLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQF  303 (379)
Q Consensus       241 ~~~~~~~-------~----------~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (379)
                      ..+..|.       .          .+..++|+|++++ +++.|+.+++|+...........                  
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~------------------  347 (383)
T 3ei3_B          287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLR------------------  347 (383)
T ss_dssp             SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEEC------------------
T ss_pred             cccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeec------------------
Confidence            3443332       2          2333555555555 55578999999987654222110                  


Q ss_pred             ccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          304 SEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                                ...|...+.+++ |++++    ++|++|+ ||.|++||+++
T Consensus       348 --------------------------~~~~~~~~~~~~-~s~~g----~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          348 --------------------------DPNAAGIISLNK-FSPTG----DVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             --------------------------BTTBCSCCCEEE-ECTTS----SEEEEEE-TTEEEEEECC-
T ss_pred             --------------------------CCCCCceEEEEE-EecCc----cEEEEec-CCcEEEEecCC
Confidence                                      012566677778 77666    8999997 99999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.4e-42  Score=296.28  Aligned_cols=286  Identities=11%  Similarity=0.094  Sum_probs=241.7

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-eEEEEEe--ccCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-WEKLHVL--QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      ...+|...|++++|+|++++|++++ ||.|++|++.+++ ......+  ..|...|.+++|+|++++|++++.|+.|++|
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            3467999999999999999999998 9999999998652 1122233  3788999999999999999999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      |+.+++.........|...+.+++|+|+++++++++.|+.|++||+++.+   ....+ ..|...+.+++|+|++++|++
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~---~~~~~-~~~~~~i~~~~~~~~~~~l~~  200 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT---LVRQF-QGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc---eeeee-ecccCceEEEEECCCCCEEEE
Confidence            99988755555557788999999999999999999999999999998876   45555 779999999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      ++.|+.|++||+                  +.++.+..+. +...+.+++|+|++++|++++.++.|++||+.+...  .
T Consensus       201 ~~~dg~i~~~d~------------------~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~  259 (337)
T 1gxr_A          201 GGLDNTVRSWDL------------------REGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--Y  259 (337)
T ss_dssp             EETTSEEEEEET------------------TTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--E
T ss_pred             EecCCcEEEEEC------------------CCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--E
Confidence            999999999997                  5556665554 567899999999999999999999999999988653  4


Q ss_pred             eeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN  320 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
                      .+..|..++.+++|+|++++|+ ++.|+.+++|+.........                                     
T Consensus       260 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-------------------------------------  302 (337)
T 1gxr_A          260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-------------------------------------  302 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-------------------------------------
T ss_pred             EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-------------------------------------
Confidence            5667889999999999999887 56788999999776542211                                     


Q ss_pred             cccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                                ..|...|++++ +++++    ++|++++.||.|++|++
T Consensus       303 ----------~~~~~~v~~~~-~s~~~----~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          303 ----------SKESSSVLSCD-ISVDD----KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ----------EECSSCEEEEE-ECTTS----CEEEEEETTSCEEEEEE
T ss_pred             ----------ecCCCcEEEEE-ECCCC----CEEEEecCCCeEEEEEE
Confidence                      24778899999 77665    89999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.5e-43  Score=296.55  Aligned_cols=244  Identities=14%  Similarity=0.186  Sum_probs=222.6

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|.+++|+|++.++++++.|+.|++||+.++  +.+..+..|...+.+++|+|++++|++++.|+.|++|++.
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence            46789999999999999999999999999999999987  6788888899999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      +++....+  ..+...+.+++|+|++++|++++.|+.|++||+++++   ....+ .+|..+|.+++|+|++++|++++.
T Consensus       153 ~~~~~~~~--~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---~~~~~-~~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          153 SGKKEYSL--DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---LLHTL-EGHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             TCSEEEEE--ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEE-CCCSSCCCEEEECTTSCEEEEECT
T ss_pred             CCceeEEe--cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---EEEEE-cccCCceeEEEEcCCCCEEEEEcC
Confidence            98855444  5678899999999999999999999999999998876   45556 789999999999999999999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      |+.|++||+                  +.++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++. ++..+.
T Consensus       227 dg~i~iwd~------------------~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~  287 (321)
T 3ow8_A          227 DGYIKIYDV------------------QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT-CVHTFF  287 (321)
T ss_dssp             TSCEEEEET------------------TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEEC
T ss_pred             CCeEEEEEC------------------CCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE-EEEEEc
Confidence            999999997                  5677888899999999999999999999999999999999998876 457788


Q ss_pred             eecCCeeeEEEecCCcEEE-EEeCCCeEEEEe
Q 016982          245 FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       245 ~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      .|...|.+++|+|++++|+ ++.|+.+++|+.
T Consensus       288 ~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          288 DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            8999999999999998777 678889999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.8e-42  Score=293.72  Aligned_cols=246  Identities=17%  Similarity=0.220  Sum_probs=206.2

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCce--EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW--EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+|...|++++|+|++ .|++|+.||.|+|||+.+++.  .....+.+|...|++++|+|++++|++++.|++|++||+.
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            4567889999999985 678899999999999988742  2334566899999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEE-eecCCcCEEEEEEcCC-CcEEEE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLI-RKRHDSSVTSVAWHPN-NVFLAT  161 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~-~~~l~~  161 (379)
                      +++.+..+  .+|...|.+++|+|++. +|++++.|+.|++||+++++.   ...+ ...+...+.+++|+|+ +++|++
T Consensus       158 ~~~~~~~~--~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          158 QQVVLSSY--RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---ASQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             TTEEEEEE--CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---EEECC----CCCEEEEEECSSCTTEEEE
T ss_pred             CCcEEEEE--cCcCCceEEEEecCCCCCceeeeccccccccccccccce---eeeeecceeeccceeeeecCCCCcceEE
Confidence            99866554  78999999999999874 789999999999999998874   2222 1355667999999995 578999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCcee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG-NTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      |+.|+.|++||+                  ++++++..+.+|...|++++|+|++ ++|++++.|++|++||+.+++ + 
T Consensus       233 g~~dg~v~~wd~------------------~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~-  292 (344)
T 4gqb_B          233 GDENGTVSLVDT------------------KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-L-  292 (344)
T ss_dssp             EETTSEEEEEES------------------CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-E-
T ss_pred             eccCCcEEEEEC------------------CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-E-
Confidence            999999999997                  6788889999999999999999997 579999999999999998765 3 


Q ss_pred             eeeeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecCC
Q 016982          241 QNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~~  278 (379)
                      ..+.+|...|++++|+|+++ +|+ ++.|+.|++|.....
T Consensus       293 ~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          293 FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            45678999999999999886 565 678999999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-42  Score=304.12  Aligned_cols=244  Identities=15%  Similarity=0.237  Sum_probs=222.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.+.|++++|+|++++|++|+.|+.|++||+.+.  +.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus       145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~  222 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ  222 (410)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            46789999999999999999999999999999999886  6888999999999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC---------
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN---------  155 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---------  155 (379)
                      ++.+...+  ..|...|.++.|+|++++|++++.|+.|++||+.+..   ....+ ..|...|.+++|+|+         
T Consensus       223 ~~~~~~~~--~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~---~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~  296 (410)
T 1vyh_C          223 TGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE---CKAEL-REHRHVVECISWAPESSYSSISEA  296 (410)
T ss_dssp             TCCEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---EEEEE-CCCSSCEEEEEECCSCGGGGGGGC
T ss_pred             CCcEEEEE--eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---eeeEe-cCCCceEEEEEEcCcccccchhhh
Confidence            99866555  6799999999999999999999999999999998876   45555 789999999999996         


Q ss_pred             -----------CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC
Q 016982          156 -----------NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH  224 (379)
Q Consensus       156 -----------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  224 (379)
                                 +.+|++|+.|+.|++||+                  .++.++..+.+|...|.+++|+|+|++|++++.
T Consensus       297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~------------------~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  358 (410)
T 1vyh_C          297 TGSETKKSGKPGPFLLSGSRDKTIKMWDV------------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD  358 (410)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEET------------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEEC------------------CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC
Confidence                       668999999999999997                  678889999999999999999999999999999


Q ss_pred             CCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEe
Q 016982          225 NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       225 d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      |+.|++||+.+++ ++..+..|...|++++|+|++.+|+ ++.|+.+++|+.
T Consensus       359 D~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          359 DKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             TTEEEEECCTTSC-CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CCeEEEEECCCCc-eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            9999999998766 4578889999999999999998777 678999999964

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-41  Score=286.79  Aligned_cols=289  Identities=10%  Similarity=0.053  Sum_probs=243.4

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|.+.|++++| |++++|++|+.||.|++||+.++  +....+..|...|.+++|+|++++|++++.|+.+++|++
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~   88 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL   88 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence            357889999999999 99999999999999999999887  677788889999999999999999999999999999998


Q ss_pred             cCCce-eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEEEE
Q 016982           84 EGSEW-VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFLAT  161 (379)
Q Consensus        84 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~  161 (379)
                      ..... ........|...|.+++|  +++++++++.|+.|++||  ...   ....+ ..|...+.+++|.| +++++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~---~~~~~-~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS---LVYNL-QAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE---EEEEE-ECCSSCEEEEEEEETTTTEEEE
T ss_pred             eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc---EEEec-ccCCCceeEEEEccCCCCEEEE
Confidence            76521 123334678999999999  578999999999999999  332   34445 78999999999998 8899999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec-CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      ++.|+.|++||.                    .+....+.. |...+.+++|+|++. +++++.|+.|++||+++++ .+
T Consensus       161 ~~~d~~i~i~d~--------------------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-~~  218 (313)
T 3odt_A          161 ASADKTIKLWQN--------------------DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-VL  218 (313)
T ss_dssp             EETTSCEEEEET--------------------TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC-EE
T ss_pred             EECCCCEEEEec--------------------CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh-hh
Confidence            999999999985                    455566665 788999999999998 8899999999999998876 45


Q ss_pred             eeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982          241 QNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN  320 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
                      ..+..|..+|.+++|+|++.+++++.|+.+++|+........                                      
T Consensus       219 ~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--------------------------------------  260 (313)
T 3odt_A          219 RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQ--------------------------------------  260 (313)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEE--------------------------------------
T ss_pred             hhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeE--------------------------------------
Confidence            778889999999999999988889999999999976653222                                      


Q ss_pred             cccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                              .+..|...|++++ +++++    + +++++.||.|++||+++++.+...
T Consensus       261 --------~~~~~~~~i~~~~-~~~~~----~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          261 --------VITLPAISIWSVD-CMSNG----D-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             --------EEECSSSCEEEEE-ECTTS----C-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             --------EEeccCceEEEEE-EccCC----C-EEEEeCCCcEEEEeCCCCceeehh
Confidence                    1146888999999 77665    5 678999999999999987766543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.4e-43  Score=304.59  Aligned_cols=318  Identities=12%  Similarity=0.058  Sum_probs=244.3

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc----eEEEEEeccCCCceEEEEEcCC----C---CEEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK----WEKLHVLQKHDQIVSGIDWSVR----S---NRIVTVS   73 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~   73 (379)
                      .+.+|.++|++++|+|  ++|++|+.||.|++|++.+++    ......+.+|...|.+++|+|+    +   ++|++++
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEc
Confidence            4678999999999998  899999999999999999873    2257778899999999999999    9   9999999


Q ss_pred             CCCeEEEEeccCCce-----eeeEEeecC-----CCceeEEEEC----CCCCE-EEEEeCCCeEEEEEeec------CCc
Q 016982           74 HDRNSYVWNQEGSEW-----VPTLVILRL-----NRAALCVQWS----PKENK-FAVGSGAKTVCICYYEQ------ENN  132 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~-----~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~v~i~~~~~------~~~  132 (379)
                      .|+.|++|++.+++.     ...+  ..|     ...|.+++|+    |++++ |++++.|+.|++||+..      ...
T Consensus        89 ~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           89 FSGDLLFYRITREDETKKVIFEKL--DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEE--CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             CCCCEEEEEccCCcccccccceee--cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            999999999988764     3333  556     4899999999    99999 99999999999999998      442


Q ss_pred             ee--EEEEEe------ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec--
Q 016982          133 WW--VSKLIR------KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL--  202 (379)
Q Consensus       133 ~~--~~~~~~------~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  202 (379)
                      ..  ....+.      ..|...+.+++|+|++ +|++++.|+.|++||+                  +.++.+..+..  
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~  227 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL------------------STLRPLYNFESQH  227 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET------------------TTTEEEEEEECCC
T ss_pred             eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEEC------------------CCCceeEEEeccc
Confidence            11  000221      3478899999999999 9999999999999997                  56778888888  


Q ss_pred             -C---CcceEEEEECCCCCEEEEEcCC---CeEEEEECCCCCceeeeeee-------------ecCCeeeEEEecCCcEE
Q 016982          203 -S---FSWAFGVKWSPSGNTLAYVGHN---SMIYFVDDVGPSPLAQNVAF-------------RDLPLRDVLFVSEKMVI  262 (379)
Q Consensus       203 -~---~~~v~~~~~sp~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l  262 (379)
                       |   ...|.+++|+|++++|++++.|   +.|++||+.+++ .+..+..             |...|.+++|+|++++|
T Consensus       228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence             8   8999999999999999999999   999999998876 4467777             89999999999999988


Q ss_pred             E-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeee
Q 016982          263 G-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIV  341 (379)
Q Consensus       263 ~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  341 (379)
                      + ++.|+.+++|+.........   +........ ..      .+       ...+        .......|...|++++
T Consensus       307 ~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~-~~------~~-------~~~g--------~~~~~~~~~~~v~~~~  361 (397)
T 1sq9_A          307 CSAGWDGKLRFWDVKTKERITT---LNMHCDDIE-IE------ED-------ILAV--------DEHGDSLAEPGVFDVK  361 (397)
T ss_dssp             EEEETTSEEEEEETTTTEEEEE---EECCGGGCS-SG------GG-------CCCB--------CTTSCBCSSCCEEEEE
T ss_pred             EEEeCCCeEEEEEcCCCceeEE---EecccCccc-ch------hh-------hhcc--------ccccccccCCceeEEE
Confidence            8 56788999999876532222   210000000 00      00       0000        0001245699999999


Q ss_pred             eecccC------CcccceEEEeecCceEEEEeCCCcc
Q 016982          342 PLREAG------SSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       342 ~~~~~~------~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                       |++++      ..++++|++++.||.|++|++.+++
T Consensus       362 -~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          362 -FLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             -EECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             -eccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence             66553      0111699999999999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.2e-42  Score=295.74  Aligned_cols=310  Identities=12%  Similarity=0.091  Sum_probs=232.0

Q ss_pred             eeccCcceeEEEeCCCCcEE-EEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC---CCEEEEEeCCCeE
Q 016982            6 VHQFAQCITCHAWSPDHAMV-AFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR---SNRIVTVSHDRNS   78 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l-~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i   78 (379)
                      +.+|...|++++|+|++..+ ++|+.   ||.|++||+.+++......+ +|...|.+++|+|+   +++|++++.|+.|
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            45689999999999999655 56655   89999999998754443333 68899999999998   6999999999999


Q ss_pred             EEEeccCCc-eeeeEEeecCCCceeEEE------ECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC----cCE
Q 016982           79 YVWNQEGSE-WVPTLVILRLNRAALCVQ------WSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD----SSV  147 (379)
Q Consensus        79 ~vw~~~~~~-~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~----~~v  147 (379)
                      ++||+.+++ ....+  ..|...|.++.      |+|++++|++++.|+.|++||++....  ....+ ..|.    ..+
T Consensus        93 ~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~-~~~~~~~~~~v  167 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSV--KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD--PVANM-EPVQGENKRDC  167 (357)
T ss_dssp             EEECTTSCSSCSEEE--CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--CSEEE-CCCTTSCCCCE
T ss_pred             EEEeCCCCCccEEEE--EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--cceec-cccCCCCCCce
Confidence            999999876 44433  67999999995      578999999999999999999987652  12333 3333    388


Q ss_pred             EEEE----EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC---CCCEEE
Q 016982          148 TSVA----WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP---SGNTLA  220 (379)
Q Consensus       148 ~~~~----~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~  220 (379)
                      .+++    |+|++++|++++.|+.|++||+                  +.++.. ....|...|.+++|+|   ++.+|+
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~------------------~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDL------------------RNMALR-WETNIKNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEETTSEEEEEET------------------TTTEEE-EEEECSSCEEEEEESCSSSSCCEEE
T ss_pred             EEEEEEeccCCCCCEEEEEccCCeEEEEEC------------------ccCcee-eecCCCCceEEEEcCCCCCCCCEEE
Confidence            8998    7889999999999999999997                  444443 3456788899999999   999999


Q ss_pred             EEcCCCeEEEEECCCCCceeee-----eeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecCCCcEEEEEEecccccC
Q 016982          221 YVGHNSMIYFVDDVGPSPLAQN-----VAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADETGIWTFIKFLDERKTS  293 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      +++.||.|++||+++.... ..     +..|...|.+++|+|+++ +++ ++.|+.+++|+..........   +     
T Consensus       229 ~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~-----  299 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQHPT-KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK---D-----  299 (357)
T ss_dssp             EEESTTEEEEEEEEEEETT-TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C---C-----
T ss_pred             EECCCCeEEEEeCcCCCcc-cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc---c-----
Confidence            9999999999998775432 22     237889999999999988 565 677899999997654311100   0     


Q ss_pred             CCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEE-EeecCceEEEEeCCCcc
Q 016982          294 SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT-TSGLDGKIVTWDLESQE  372 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~-t~~~Dg~v~iW~~~~~~  372 (379)
                      ..+..  ..........                 ..+.+|...|++++ |++++    ++|+ |++.||.|++||+.+.+
T Consensus       300 ~~g~~--~~~~~~~~~~-----------------~~~~~~~~~v~~~~-~s~~~----~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          300 SEGIE--MGVAGSVSLL-----------------QNVTLSTQPISSLD-WSPDK----RGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             TTSCC--CCCCCEEEEE-----------------EEEECCSSCEEEEE-ECSSS----TTEEEEEETTSEEEEEEECC--
T ss_pred             CCCCc--ccccccccee-----------------eccccCCCCeeEEE-EcCCC----CeEEEEecCCCcEEEEECCCcc
Confidence            00000  0000000111                 13468999999999 77666    7787 89999999999998866


Q ss_pred             c
Q 016982          373 D  373 (379)
Q Consensus       373 ~  373 (379)
                      .
T Consensus       356 ~  356 (357)
T 3i2n_A          356 K  356 (357)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-43  Score=311.60  Aligned_cols=336  Identities=15%  Similarity=0.091  Sum_probs=233.5

Q ss_pred             eeccCcceeEEEeCCCC---------cEEEEE-------------------ecCCeEEEEEecCCceE--EEEEeccCCC
Q 016982            6 VHQFAQCITCHAWSPDH---------AMVAFC-------------------PNNNEVHIYKLIQEKWE--KLHVLQKHDQ   55 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~---------~~l~~~-------------------~~dg~i~i~~~~~~~~~--~~~~~~~~~~   55 (379)
                      ...+.+.|.+|+|+|++         ++||+|                   +.|+.|+||++.+++..  ....+.+|.+
T Consensus       129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~  208 (524)
T 2j04_B          129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG  208 (524)
T ss_dssp             EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCC
T ss_pred             EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC
Confidence            34467899999999976         677764                   46789999999876422  2345677888


Q ss_pred             ceEEEEEcCC------CCEEEEEeCCCeEEEEeccCCcee---------eeEEeecCCCceeEEEECCCCCEEEEEeCCC
Q 016982           56 IVSGIDWSVR------SNRIVTVSHDRNSYVWNQEGSEWV---------PTLVILRLNRAALCVQWSPKENKFAVGSGAK  120 (379)
Q Consensus        56 ~v~~~~~~~~------~~~l~~~~~d~~i~vw~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  120 (379)
                      .|.+++|+|+      +.+|++++.|++|++||+..+...         +...+..|...|++++|+++ ..|++|+.||
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~Dg  287 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNG  287 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCC
Confidence            9999999997      579999999999999999876421         12344678899999999986 4899999999


Q ss_pred             eEEEEEeecCCceeEEEEEeecCCcCEEEE--EEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceE
Q 016982          121 TVCICYYEQENNWWVSKLIRKRHDSSVTSV--AWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI  197 (379)
Q Consensus       121 ~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
                      +|++||++++..  ....+ ..|...|.++  +|+|++ ++|++++.|++|+|||+                  +.++++
T Consensus       288 tV~lWD~~~~~~--~~~~~-~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~------------------~~~~~~  346 (524)
T 2j04_B          288 FVAEFDLTDPEV--PSFYD-QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP------------------KDIATT  346 (524)
T ss_dssp             EEEEEETTBCSS--CSEEE-ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG------------------GGHHHH
T ss_pred             EEEEEECCCCCC--ceEEe-ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC------------------CCCCcc
Confidence            999999987642  22334 7899999999  578887 89999999999999997                  445555


Q ss_pred             EEeecCC--cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          198 LQLDLSF--SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       198 ~~~~~~~--~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      ..+.+|.  ..|.+++|+|+++.+++++.|++|++||++++.. ...+.+|...|++++|+|+|++|+ ++.|+.+++|+
T Consensus       347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence            5555554  2478999999999999999999999999998764 366778999999999999998877 67899999998


Q ss_pred             ecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc--cccccccccccccccceeeeeeecccCCcccc
Q 016982          275 ADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN--DAVESSRTRGGTHVNCINCIVPLREAGSSRIT  352 (379)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  352 (379)
                      .... .+.......  ............+++....+...+ .....  .........+.+|...|++|+ |+|++ +.+.
T Consensus       426 ~~~~-~~~~~~~~~--~~~~~~~v~~v~~sp~g~~~~~~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Va-fsp~~-~~~~  499 (524)
T 2j04_B          426 AARR-LLHGIKNSS--ATQKSLRLWKWDYSIKDDKYRIDS-SYEVYPLTVNDVSKAKIDAHGINITCTK-WNETS-AGGK  499 (524)
T ss_dssp             SCSS-TTTCC--------CCCCEEEECBCCSSSCEEEECC-CCCCCC-------------CCCSCCCEE-ECCST-TTTT
T ss_pred             chHh-hccccccCc--cceeeeEEEEeccCCCCCeEEccC-CceecccccCCcceeeecCCCceEEEEE-CCCCC-CccH
Confidence            6432 111000000  000000000111222111111000 00000  000122335689999999999 88776 3356


Q ss_pred             eEEEeecCceEEEEeCCC
Q 016982          353 RFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       353 ~l~t~~~Dg~v~iW~~~~  370 (379)
                      .+|+|+.||.||||++.-
T Consensus       500 ~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          500 CYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEEEECTTSEEEEEECSC
T ss_pred             HHHhhccCceEEEEEccc
Confidence            999999999999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-43  Score=307.25  Aligned_cols=298  Identities=13%  Similarity=0.181  Sum_probs=241.7

Q ss_pred             eccCcceeEEEeCCCCc-EEEEE----------ecCCeEEEEEecCCceE-EEEEeccCCCceEEEEEcCCCCEEEEEeC
Q 016982            7 HQFAQCITCHAWSPDHA-MVAFC----------PNNNEVHIYKLIQEKWE-KLHVLQKHDQIVSGIDWSVRSNRIVTVSH   74 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~-~l~~~----------~~dg~i~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   74 (379)
                      ..+...|.+++|+|+++ +|++|          +.|+.|++|++.++... .+..+ .|...|.+++|+|++++|++++.
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~   87 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALD   87 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEES
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEcc
Confidence            44567899999999987 99999          88999999999876321 23333 58889999999999999999999


Q ss_pred             CCeEEEEeccCC--ceeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCC------ceeEEEEEeecCCc
Q 016982           75 DRNSYVWNQEGS--EWVPTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQEN------NWWVSKLIRKRHDS  145 (379)
Q Consensus        75 d~~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~~~  145 (379)
                      |+.|++||+.+.  .......+..|...|.+++|+|+ +++|++++.|+.|++||+....      ........ ..|..
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~  166 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVD  166 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc-cCCCC
Confidence            999999999872  11123344679999999999998 8999999999999999998765      21111122 57889


Q ss_pred             CEEEEEEcCC-CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC------CcceEEEEECCCC-C
Q 016982          146 SVTSVAWHPN-NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS------FSWAFGVKWSPSG-N  217 (379)
Q Consensus       146 ~v~~~~~~p~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~-~  217 (379)
                      .|.+++|+|+ +.+|++++.|+.|++||+                  ..++.+..+..+      ...+.+++|+|++ .
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSNFASIWDL------------------KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSSCEEEEET------------------TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             CeeEEEeCCCCCcEEEEEcCCCCEEEEEC------------------CCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence            9999999999 789999999999999997                  566777777665      7889999999997 6


Q ss_pred             EEEEEcCCC---eEEEEECCCCCceeeeee-eecCCeeeEEEec-CCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982          218 TLAYVGHNS---MIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVS-EKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERK  291 (379)
Q Consensus       218 ~l~~~~~d~---~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~-~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~  291 (379)
                      +|++++.|+   .|++||+++.......+. .|...|.+++|+| ++++|+ ++.|+.+++|+........         
T Consensus       229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~---------  299 (416)
T 2pm9_A          229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS---------  299 (416)
T ss_dssp             EEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE---------
T ss_pred             EEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce---------
Confidence            899999998   999999998755567777 8999999999999 888777 6678999999876543211         


Q ss_pred             cCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                                           .+.+|...|++++ |++++   ..+|++++.||.|++|++.+.
T Consensus       300 -------------------------------------~~~~~~~~v~~~~-~s~~~---~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          300 -------------------------------------QFPARGNWCFKTK-FAPEA---PDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             -------------------------------------EEECSSSCCCCEE-ECTTC---TTEEEECCSSSEEEEEESCCC
T ss_pred             -------------------------------------eecCCCCceEEEE-ECCCC---CCEEEEEecCCcEEEEEccCC
Confidence                                                 1246889999999 66554   179999999999999999876


Q ss_pred             ccc
Q 016982          372 EDL  374 (379)
Q Consensus       372 ~~~  374 (379)
                      +..
T Consensus       339 ~~~  341 (416)
T 2pm9_A          339 TNT  341 (416)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.1e-42  Score=296.83  Aligned_cols=309  Identities=11%  Similarity=0.073  Sum_probs=234.3

Q ss_pred             eccCcceeEEEeCCC----CcEEEEEecCCeEEEEEecCCce-EEEEEec--cCCCceEEEEEcCC----CCEEEEEeCC
Q 016982            7 HQFAQCITCHAWSPD----HAMVAFCPNNNEVHIYKLIQEKW-EKLHVLQ--KHDQIVSGIDWSVR----SNRIVTVSHD   75 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~~-~~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~~d   75 (379)
                      .+|.++|++++|+|+    ...+++++.++.|++|++.+++. ..+....  .|...|.+++|+|+    +++|++++.|
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d   94 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR   94 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC
Confidence            479999999999984    45566666778999999986531 2222222  26678999999999    6699999999


Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCEEEEEE
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSVTSVAW  152 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~~  152 (379)
                      +.|++||+.+++....+  ..|...|.+++|+| ++++|++++.||.|++||++.++.   ...+.  ..|...|.+++|
T Consensus        95 g~i~v~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           95 GIIRIINPITMQCIKHY--VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL---VAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             CEEEEECTTTCCEEEEE--ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE---EEEECSTTSCSSCEEEEEE
T ss_pred             CEEEEEEchhceEeeee--cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE---EEEecccccccCceeEEEE
Confidence            99999999998865554  57999999999999 999999999999999999988762   33321  478999999999


Q ss_pred             cCCCcEEEEeeCCCeEEEEeccccccccc--------cccC--CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE
Q 016982          153 HPNNVFLATTSTDGKCRVFSTFIKGVDIK--------EKKE--GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV  222 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  222 (379)
                      +|++++|++++.|+.|++||+........        ....  .................|...|.+++|+  +++|+++
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~  247 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK  247 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence            99999999999999999999853211100        0000  0000000111233445588999999999  7799999


Q ss_pred             cCCCeEEEEECCCCCc-------------eeeeeeeecCCeeeEEEecC--CcEEE-EEeCCCeEEEEecCCCcEE-EEE
Q 016982          223 GHNSMIYFVDDVGPSP-------------LAQNVAFRDLPLRDVLFVSE--KMVIG-VGFDCNPMVFAADETGIWT-FIK  285 (379)
Q Consensus       223 ~~d~~i~v~d~~~~~~-------------~~~~~~~~~~~i~~~~~s~~--~~~l~-~~~d~~~~i~~~~~~~~~~-~~~  285 (379)
                      +.|+.|++||+.+...             .+..+..|...|.+++|+|+  +++|+ ++.|+.+++|+........ ...
T Consensus       248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  327 (366)
T 3k26_A          248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCT  327 (366)
T ss_dssp             CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEE
T ss_pred             ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccce
Confidence            9999999999877543             34666778889999999999  99888 5678899999977543111 110


Q ss_pred             EecccccCCCCCccCCCcccccceeeccccccCccccccccccccccc--ccceeeeeeecccCCcccceEEEeecCceE
Q 016982          286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTH--VNCINCIVPLREAGSSRITRFTTSGLDGKI  363 (379)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v  363 (379)
                                                                 .+.+|  ...|++++ |++++    ++|++++.||.|
T Consensus       328 -------------------------------------------~~~~~~~~~~v~~~~-~s~~~----~~l~s~~~dg~i  359 (366)
T 3k26_A          328 -------------------------------------------TLTHHKCGAAIRQTS-FSRDS----SILIAVCDDASI  359 (366)
T ss_dssp             -------------------------------------------EECCTTCCSCEEEEE-ECTTS----SEEEEEETTSEE
T ss_pred             -------------------------------------------EEcccccCCceEEEE-eCCCC----CeEEEEeCCCEE
Confidence                                                       11345  78999999 77665    899999999999


Q ss_pred             EEEeCCC
Q 016982          364 VTWDLES  370 (379)
Q Consensus       364 ~iW~~~~  370 (379)
                      ++||+.+
T Consensus       360 ~iwd~~~  366 (366)
T 3k26_A          360 WRWDRLR  366 (366)
T ss_dssp             EEEEC--
T ss_pred             EEEEecC
Confidence            9999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-41  Score=298.39  Aligned_cols=289  Identities=12%  Similarity=0.175  Sum_probs=235.5

Q ss_pred             eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEe----cCCce----EEEEEecc----------CCCceEEEEEcCCC
Q 016982            6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKL----IQEKW----EKLHVLQK----------HDQIVSGIDWSVRS   66 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~----~~~~~----~~~~~~~~----------~~~~v~~~~~~~~~   66 (379)
                      .+.|.++|++++|+|+++ +||+|+.||.|++|++    .+++.    .....+..          |...|.+++|+|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            355679999999999999 9999999999999999    76631    03344443          67799999999999


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC
Q 016982           67 NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS  146 (379)
Q Consensus        67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~  146 (379)
                      ++|++++.|+.|++|| .+++....  +..|...|.+++|+|++++|++++.|+.|++||+.++.   ....+ ..+...
T Consensus       121 ~~l~~~~~dg~i~i~~-~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~-~~~~~~  193 (425)
T 1r5m_A          121 NSIVTGVENGELRLWN-KTGALLNV--LNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT---VMQHF-ELKETG  193 (425)
T ss_dssp             SEEEEEETTSCEEEEE-TTSCEEEE--ECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE---EEEEE-CCC---
T ss_pred             CEEEEEeCCCeEEEEe-CCCCeeee--ccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc---EEEEe-eccccC
Confidence            9999999999999999 44554443  36789999999999999999999999999999998776   34444 445444


Q ss_pred             ---------------EEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE
Q 016982          147 ---------------VTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK  211 (379)
Q Consensus       147 ---------------v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  211 (379)
                                     +.+++|+|++ .+++++.++.|++||+                  ..++.+..+..|...|.+++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~------------------~~~~~~~~~~~~~~~i~~~~  254 (425)
T 1r5m_A          194 GSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQI------------------TEKTPTGKLIGHHGPISVLE  254 (425)
T ss_dssp             ------------CCCBSCCEEEETT-EEEEECGGGCEEEEET------------------TCSSCSEEECCCSSCEEEEE
T ss_pred             ccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEc------------------CCCceeeeeccCCCceEEEE
Confidence                           8899999875 5888899999999997                  55677778888999999999


Q ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982          212 WSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERK  291 (379)
Q Consensus       212 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~  291 (379)
                      |+|++++|++++.|+.|++||+.+... ...+..|...|.+++|+|++.+++++.|+.+++|+.....   ...      
T Consensus       255 ~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~------  324 (425)
T 1r5m_A          255 FNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT---LLA------  324 (425)
T ss_dssp             EETTTTEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE---EEE------
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc---EeE------
Confidence            999999999999999999999988664 4677778999999999999955557889999999976542   111      


Q ss_pred             cCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                                           .+.+|...|.+++ +++++    ++|++++.||.|++||+.++
T Consensus       325 -------------------------------------~~~~~~~~i~~~~-~s~~~----~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          325 -------------------------------------LSIVDGVPIFAGR-ISQDG----QKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             -------------------------------------EEECTTCCEEEEE-ECTTS----SEEEEEETTSCEEEEECHHH
T ss_pred             -------------------------------------ecccCCccEEEEE-EcCCC----CEEEEEECCCeEEEEECCCC
Confidence                                                 1146888999999 77665    89999999999999999887


Q ss_pred             c
Q 016982          372 E  372 (379)
Q Consensus       372 ~  372 (379)
                      +
T Consensus       363 ~  363 (425)
T 1r5m_A          363 N  363 (425)
T ss_dssp             H
T ss_pred             c
Confidence            6

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-40  Score=290.75  Aligned_cols=284  Identities=14%  Similarity=0.214  Sum_probs=229.7

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      +.+++|++  ..+++++.|+.|++|++.+++  ....+.. |...|.+++|+|++++|++++.||.|++||+.+++....
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  171 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGS--VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT  171 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCC--EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCc--EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE
Confidence            44566665  557778899999999999884  3344433 788999999999999999999999999999999886555


Q ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982           92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF  171 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~  171 (379)
                      +  ..|...|.+++|  +++.+++++.|+.|++||++....  ....+ ..|...|.+++|+|++++|++++.|+.|++|
T Consensus       172 ~--~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          172 M--AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH--QIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             E--CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC--EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             e--cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc--eeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence            4  679999999999  467999999999999999985442  34455 7899999999999999999999999999999


Q ss_pred             eccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC-EEEEEc--CCCeEEEEECCCCCceeeeeeeecC
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN-TLAYVG--HNSMIYFVDDVGPSPLAQNVAFRDL  248 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~  248 (379)
                      |+                  ..++++..+..|...|.+++|+|++. ++++++  .|+.|++||+.++.. ...+. +..
T Consensus       245 d~------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-~~~~~-~~~  304 (401)
T 4aez_A          245 DA------------------RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-VNTVD-AGS  304 (401)
T ss_dssp             ET------------------TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-EEEEE-CSS
T ss_pred             cC------------------CCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-EEEEe-CCC
Confidence            97                  56778888888999999999999765 555554  799999999988764 35554 677


Q ss_pred             CeeeEEEecCCcEEEEE---eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccc
Q 016982          249 PLRDVLFVSEKMVIGVG---FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVES  325 (379)
Q Consensus       249 ~i~~~~~s~~~~~l~~~---~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (379)
                      .+.+++|+|++++++++   .|+.+.+|+..........                                         
T Consensus       305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~-----------------------------------------  343 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV-----------------------------------------  343 (401)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE-----------------------------------------
T ss_pred             cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE-----------------------------------------
Confidence            89999999999988853   5899999997654311111                                         


Q ss_pred             ccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          326 SRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       326 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                         .+.+|...|++++ +++++    ++|++++.||.|++|++.+++.++.
T Consensus       344 ---~~~~h~~~v~~~~-~s~dg----~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          344 ---DIPAHDTRVLYSA-LSPDG----RILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             ---EEECCSSCCCEEE-ECTTS----SEEEEECTTSEEEEEECCC------
T ss_pred             ---EecCCCCCEEEEE-ECCCC----CEEEEEeCCCcEEEEECCCCccccc
Confidence               1247999999999 77665    8999999999999999999877654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-42  Score=304.42  Aligned_cols=325  Identities=11%  Similarity=0.125  Sum_probs=246.7

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEEeccCCCceEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDWSVR-SNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~   82 (379)
                      ...|...|++++|+|++++|++|+.||.|++|++.+.  ..+....+.+|...|.+++|+|+ +++|++++.|+.|++||
T Consensus        63 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd  142 (416)
T 2pm9_A           63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD  142 (416)
T ss_dssp             CCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred             EEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence            3568899999999999999999999999999999871  12578888999999999999998 89999999999999999


Q ss_pred             ccCCc------eeee-EEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC------CcCEE
Q 016982           83 QEGSE------WVPT-LVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH------DSSVT  148 (379)
Q Consensus        83 ~~~~~------~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~------~~~v~  148 (379)
                      +.+++      .... .....|...|.+++|+|+ +.+|++++.|+.|++||++...   ....+ ..+      ...+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~-~~~~~~~~~~~~v~  218 (416)
T 2pm9_A          143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK---EVIHL-SYTSPNSGIKQQLS  218 (416)
T ss_dssp             TTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE---EEEEE-CCCCCSSCCCCCEE
T ss_pred             CCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC---cceEE-eccccccccCCceE
Confidence            98875      2211 122468889999999998 7899999999999999998876   34444 333      78899


Q ss_pred             EEEEcCCC-cEEEEeeCCC---eEEEEeccccccccccccCCCccCCcccceEEEee-cCCcceEEEEECC-CCCEEEEE
Q 016982          149 SVAWHPNN-VFLATTSTDG---KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSFSWAFGVKWSP-SGNTLAYV  222 (379)
Q Consensus       149 ~~~~~p~~-~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~  222 (379)
                      +++|+|++ .++++++.|+   .|++||+.                 ....++..+. .|...|.+++|+| ++++|+++
T Consensus       219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~-----------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~  281 (416)
T 2pm9_A          219 VVEWHPKNSTRVATATGSDNDPSILIWDLR-----------------NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS  281 (416)
T ss_dssp             EEEECSSCTTEEEEEECCSSSCCCCEEETT-----------------STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE
T ss_pred             EEEECCCCCCEEEEEECCCCCceEEEEeCC-----------------CCCCCcEEeecCccCceeEEEeCCCCCCeEEEE
Confidence            99999997 6899999998   99999972                 2224556666 8899999999999 99999999


Q ss_pred             cCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCC-cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccC
Q 016982          223 GHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEK-MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG  300 (379)
Q Consensus       223 ~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (379)
                      +.|+.|++||+.+++ .+..+..|...|.+++|+|++ .+|+ ++.|+.+++|+......-.........   .      
T Consensus       282 ~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~---~------  351 (416)
T 2pm9_A          282 GRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETK---Q------  351 (416)
T ss_dssp             ESSSEEEEECSSSCC-EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------
T ss_pred             eCCCCEEEeeCCCCc-cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccc---c------
Confidence            999999999998876 457788899999999999998 6777 567889999998754311100000000   0      


Q ss_pred             CCcccccceeecccc---ccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          301 SQFSEAFGKLYGQSK---YGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       301 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                       .  .....+.....   .+... ..-.. .....|...+++++ |++++    ++|++++.||.|+||++.+.
T Consensus       352 -~--~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~-~s~dg----~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          352 -Q--ESETDFWNNVSREESKEKP-SVFHL-QAPTWYGEPSPAAH-WAFGG----KLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ------------------CCSCC-CSSCC-CCCSTTCCCSCCCE-EETTT----EEECBCTTSSCBCCBCCCCC
T ss_pred             -c--CCccccccccccccccccc-ccccc-cCCccccCCccceE-EeeCC----eEEEEeCCCCeEEEEEeccC
Confidence             0  00000000000   00000 00001 23345788898999 88776    99999999999999999874

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.2e-42  Score=295.73  Aligned_cols=294  Identities=11%  Similarity=0.024  Sum_probs=217.9

Q ss_pred             Ccccceec----cCcceeEEEeCCCCcEEEEEecC-------CeEEEEEecCCc------e--EEEEEeccCCCceEEEE
Q 016982            1 MAAIAVHQ----FAQCITCHAWSPDHAMVAFCPNN-------NEVHIYKLIQEK------W--EKLHVLQKHDQIVSGID   61 (379)
Q Consensus         1 m~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d-------g~i~i~~~~~~~------~--~~~~~~~~~~~~v~~~~   61 (379)
                      |+.|++..    ..-||++++|+||+++|++|+.+       +.|++|++....      .  .....+.+|...|.+++
T Consensus         1 m~~m~~~~~~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~   80 (365)
T 4h5i_A            1 MASMKFVTASYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAID   80 (365)
T ss_dssp             ---CCCCEEEEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEE
T ss_pred             CCcccceeeecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEE
Confidence            66655533    25699999999999999998753       369999987542      1  22345778888888887


Q ss_pred             EcCCCCEEEEEe-----------CCCeEEEEeccCCceeeeE-E------eecCCCceeEEEECCCCCEEEEEe--CCCe
Q 016982           62 WSVRSNRIVTVS-----------HDRNSYVWNQEGSEWVPTL-V------ILRLNRAALCVQWSPKENKFAVGS--GAKT  121 (379)
Q Consensus        62 ~~~~~~~l~~~~-----------~d~~i~vw~~~~~~~~~~~-~------~~~~~~~v~~~~~~~~~~~l~~~~--~d~~  121 (379)
                      ++  ++.++++.           .|+.+++|++......... .      ...+...+.+++|+|||+++++++  .|+.
T Consensus        81 ~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~  158 (365)
T 4h5i_A           81 AS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAI  158 (365)
T ss_dssp             EE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCE
T ss_pred             eC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCE
Confidence            65  55666653           4678999998765321111 1      112334588999999999987554  6899


Q ss_pred             EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE--E
Q 016982          122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL--Q  199 (379)
Q Consensus       122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~  199 (379)
                      |++||+++..   ....+  .|...|.+++|+|+++++++++.++ +.+|+.                  .+++.+.  .
T Consensus       159 i~iwd~~~~~---~~~~~--~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~------------------~~~~~~~~~~  214 (365)
T 4h5i_A          159 MRIIDPSDLT---EKFEI--ETRGEVKDLHFSTDGKVVAYITGSS-LEVIST------------------VTGSCIARKT  214 (365)
T ss_dssp             EEEEETTTTE---EEEEE--ECSSCCCEEEECTTSSEEEEECSSC-EEEEET------------------TTCCEEEEEC
T ss_pred             EEEeECCCCc---EEEEe--CCCCceEEEEEccCCceEEecccee-EEEEEe------------------ccCcceeeee
Confidence            9999998876   33443  5778899999999999999998665 555553                  3344433  3


Q ss_pred             eecCCcceEEEEECCCCCEEEEEcCCC----eEEEEECCCCCce---eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeE
Q 016982          200 LDLSFSWAFGVKWSPSGNTLAYVGHNS----MIYFVDDVGPSPL---AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPM  271 (379)
Q Consensus       200 ~~~~~~~v~~~~~sp~~~~l~~~~~d~----~i~v~d~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~  271 (379)
                      ...|...|.+++|+|+++++++++.|+    .+++|++......   ...+..|..+|++++|+|||++|| ++.|+.|+
T Consensus       215 ~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~  294 (365)
T 4h5i_A          215 DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA  294 (365)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence            456788899999999999999998776    6888987765422   234567788999999999999998 66788999


Q ss_pred             EEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCccc
Q 016982          272 VFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRI  351 (379)
Q Consensus       272 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  351 (379)
                      +|+.....   ....                                          .+.+|...|++|+ |+|++    
T Consensus       295 iwd~~~~~---~~~~------------------------------------------~~~gH~~~V~~v~-fSpdg----  324 (365)
T 4h5i_A          295 LVKLKDLS---MSKI------------------------------------------FKQAHSFAITEVT-ISPDS----  324 (365)
T ss_dssp             EEETTTTE---EEEE------------------------------------------ETTSSSSCEEEEE-ECTTS----
T ss_pred             EEECCCCc---EEEE------------------------------------------ecCcccCCEEEEE-ECCCC----
Confidence            99976542   1110                                          2368999999999 88776    


Q ss_pred             ceEEEeecCceEEEEeCCC
Q 016982          352 TRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       352 ~~l~t~~~Dg~v~iW~~~~  370 (379)
                      ++|||||.|++||||++..
T Consensus       325 ~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          325 TYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CEEEEEETTSEEEEEECCT
T ss_pred             CEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999964

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=8.8e-41  Score=285.16  Aligned_cols=292  Identities=13%  Similarity=0.102  Sum_probs=241.0

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      .-+.++|.+++|+|||++++++..++.+.+|.....  .......+|...|.+++|+|++++|++++ |+.|++||+.++
T Consensus         6 ~~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~   82 (337)
T 1gxr_A            6 AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH--ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP   82 (337)
T ss_dssp             EEEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE--EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTST
T ss_pred             cccCCceeEEEECCCCCEEEeecCCCcEeccccCCc--cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCC
Confidence            345789999999999999999887777777655443  33334447999999999999999999998 999999999876


Q ss_pred             ceeee---EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           87 EWVPT---LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        87 ~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      +....   +....|...|.+++|+|++++|++++.|+.|++||++..... ....+ ..|...+.+++|+|++++|++++
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  160 (337)
T 1gxr_A           83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAEL-TSSAPACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEE-ECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeec-ccCCCceEEEEECCCCCEEEEEe
Confidence            53222   222368899999999999999999999999999999887531 22333 67889999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      .|+.|++||+                  ..++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++.. ..+
T Consensus       161 ~dg~v~~~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~  221 (337)
T 1gxr_A          161 SDGNIAVWDL------------------HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL-QQH  221 (337)
T ss_dssp             TTSCEEEEET------------------TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEE
T ss_pred             CCCcEEEEeC------------------CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE-eee
Confidence            9999999997                  667788888889999999999999999999999999999999887643 444


Q ss_pred             eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccc
Q 016982          244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDA  322 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (379)
                       .+...+.+++|+|++++++ ++.++.+++|+........                                        
T Consensus       222 -~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~----------------------------------------  260 (337)
T 1gxr_A          222 -DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ----------------------------------------  260 (337)
T ss_dssp             -ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE----------------------------------------
T ss_pred             -cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE----------------------------------------
Confidence             4678899999999999888 5568899999877644211                                        


Q ss_pred             cccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccc
Q 016982          323 VESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLL  375 (379)
Q Consensus       323 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~  375 (379)
                             +.+|...|.+++ +++++    ++|++++.||.|++||+.+++.+.
T Consensus       261 -------~~~~~~~v~~~~-~~~~~----~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          261 -------LHLHESCVLSLK-FAYCG----KWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             -------ECCCSSCEEEEE-ECTTS----SEEEEEETTSEEEEEETTTCCEEE
T ss_pred             -------EcCCccceeEEE-ECCCC----CEEEEecCCCcEEEEECCCCeEEE
Confidence                   146888999999 77665    899999999999999999877653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-41  Score=296.80  Aligned_cols=300  Identities=13%  Similarity=0.172  Sum_probs=240.2

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      |.+.|++++|+|++++|++++.||.|++|+.. +  +.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G--ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S--CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C--CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence            68899999999999999999999999999943 3  57788899999999999999999999999999999999999886


Q ss_pred             eeeEEeecCCCc---------------eeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982           89 VPTLVILRLNRA---------------ALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH  153 (379)
Q Consensus        89 ~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  153 (379)
                      ...+  ..+...               +.+++|+|++ .+++++.++.|++||+.....   ...+ ..|...|.+++|+
T Consensus       184 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~---~~~~-~~~~~~i~~~~~~  256 (425)
T 1r5m_A          184 MQHF--ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP---TGKL-IGHHGPISVLEFN  256 (425)
T ss_dssp             EEEE--CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC---SEEE-CCCSSCEEEEEEE
T ss_pred             EEEe--eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce---eeee-ccCCCceEEEEEC
Confidence            5554  334444               8999999875 588889999999999988763   4445 6899999999999


Q ss_pred             CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                      |++++|++++.|+.|++||+                  ..++.+..+..|...|.+++|+|++ ++++++.|+.|++||+
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHG------------------GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL  317 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECS------------------SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEcCCCEEEEEEC------------------CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence            99999999999999999997                  5667778888899999999999999 9999999999999999


Q ss_pred             CCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeec
Q 016982          234 VGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYG  312 (379)
Q Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (379)
                      .++. .+..+..|..++.+++|+|++++|+ ++.|+.+++|+......-.  ..+......        .          
T Consensus       318 ~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~--------~----------  376 (425)
T 1r5m_A          318 KQNT-LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS--RSLYGNRDG--------I----------  376 (425)
T ss_dssp             TTTE-EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------------------------
T ss_pred             CCCc-EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce--eeeeccccc--------c----------
Confidence            8876 4577777889999999999999888 5668899999976432100  000000000        0          


Q ss_pred             cccccCccccccccccccccccc--ceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          313 QSKYGVGNDAVESSRTRGGTHVN--CINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                            ......+....+.+|..  .|++++ |++++    ++|++++.||.|++|+++
T Consensus       377 ------~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~----~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          377 ------LNPLPIPLYASYQSSQDNDYIFDLS-WNCAG----NKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             --------CEECCEEEEECCTTCCCCEEEEE-ECTTS----SEEEEEESSSCCEEEECC
T ss_pred             ------cCcccchhhhhhcCcccCCceEEEE-ccCCC----ceEEEEecCceEEEEeec
Confidence                  00000011124467866  999999 77666    899999999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-40  Score=282.67  Aligned_cols=268  Identities=19%  Similarity=0.263  Sum_probs=215.0

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      .+|...|++++|+|++++||+|+.|+.|++|+...+..+.+..+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            57999999999999999999999999999999988766788899999999999999999999999999999999999876


Q ss_pred             cee-eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           87 EWV-PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        87 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ... ....+..|...|.+++|+|++++|++++.|+.|++||.+.... .....+ .+|...|.+++|+|++++|++++.|
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~-~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW-VCCATL-EGHESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE-EEEEEE-CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE-EEEEEe-cCCCCceEEEEECCCCCEEEEEeCC
Confidence            422 2333467889999999999999999999999999999987642 123444 7899999999999999999999999


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeec-CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc------
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP------  238 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~------  238 (379)
                      +.|++||.........   ...........++..+.+ |...|.+++|+|++..|++++.|+.|++|+......      
T Consensus       216 ~~v~iW~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~  292 (345)
T 3fm0_A          216 RTVRIWRQYLPGNEQG---VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF  292 (345)
T ss_dssp             SCEEEEEEECTTCTTC---CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE
T ss_pred             CeEEEeccccCCCCcc---ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE
Confidence            9999998632111000   000001123345556654 788999999999999999999999999999765421      


Q ss_pred             --eeeeeeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecCCC
Q 016982          239 --LAQNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       239 --~~~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~~~  279 (379)
                        ......+|...|++++|+|++. +|+ ++.|+.+++|+.....
T Consensus       293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             EEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence              1122346888999999999874 776 6789999999987643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.8e-40  Score=282.17  Aligned_cols=260  Identities=13%  Similarity=0.164  Sum_probs=221.0

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      ....++.+|...|.+++|+|++++|++++.|++|++||+.+++....+  ..|...|.+++|+|++++|++++.|+.+++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE--ECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe--ecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            567789999999999999999999999999999999999998865554  568899999999999999999999999999


Q ss_pred             EEeecCCc-eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          125 CYYEQENN-WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       125 ~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      |++..... ......+ .+|...|.++.|++++. +++++.|+.|++||+                  .+++++..+.+|
T Consensus       124 w~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~------------------~~~~~~~~~~~h  183 (340)
T 1got_B          124 YNLKTREGNVRVSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI------------------ETGQQTTTFTGH  183 (340)
T ss_dssp             EETTTCSBSCEEEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEET------------------TTTEEEEEECCC
T ss_pred             EECccCCCcceeEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEEC------------------CCCcEEEEEcCC
Confidence            99977542 1234445 78999999999998875 889999999999997                  677888899999


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEE
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWT  282 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~  282 (379)
                      ...|.+++|+|++++|++++.|+.|++||++++. ....+.+|...|.+++|+|++++|+ ++.|+.+++|+........
T Consensus       184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~  262 (340)
T 1got_B          184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM  262 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence            9999999999999999999999999999998876 4578888999999999999999887 6678899999976543111


Q ss_pred             EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCce
Q 016982          283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK  362 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  362 (379)
                      .   +                                         ....+...|++++ |++++    ++|++|+.||.
T Consensus       263 ~---~-----------------------------------------~~~~~~~~v~~~~-~s~~g----~~l~~g~~d~~  293 (340)
T 1got_B          263 T---Y-----------------------------------------SHDNIICGITSVS-FSKSG----RLLLAGYDDFN  293 (340)
T ss_dssp             E---E-----------------------------------------CCTTCCSCEEEEE-ECTTS----SEEEEEETTSE
T ss_pred             E---E-----------------------------------------ccCCcccceEEEE-ECCCC----CEEEEECCCCe
Confidence            1   0                                         0023445799999 77666    89999999999


Q ss_pred             EEEEeCCCcccccc
Q 016982          363 IVTWDLESQEDLLN  376 (379)
Q Consensus       363 v~iW~~~~~~~~~~  376 (379)
                      |++||+.+++.+..
T Consensus       294 i~vwd~~~~~~~~~  307 (340)
T 1got_B          294 CNVWDALKADRAGV  307 (340)
T ss_dssp             EEEEETTTCCEEEE
T ss_pred             EEEEEcccCcEeeE
Confidence            99999988766543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-40  Score=329.40  Aligned_cols=357  Identities=15%  Similarity=0.158  Sum_probs=262.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|.+.|++++|+|+|++||+|+.||.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            45689999999999999999999999999999999987  6788899999999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +++....+  ..|...|.+++|+|  ++.++++++.|+.|++||++++.   ....+ .+|...|.+++|+|++++|+++
T Consensus       688 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~---~~~~~-~~h~~~v~~~~~sp~~~~l~s~  761 (1249)
T 3sfz_A          688 TGKLVHTY--DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE---CRNTM-FGHTNSVNHCRFSPDDELLASC  761 (1249)
T ss_dssp             TCCEEEEE--ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS---EEEEE-CCCSSCEEEEEECSSTTEEEEE
T ss_pred             CCceEEEE--cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc---hhhee-cCCCCCEEEEEEecCCCEEEEE
Confidence            99866655  67999999999999  55689999999999999999887   45556 7899999999999999999999


Q ss_pred             eCCCeEEEEeccccccccccc--------------------cCCCcc----------------CCcccceEEEe-ecCCc
Q 016982          163 STDGKCRVFSTFIKGVDIKEK--------------------KEGTSS----------------DTKFGEQILQL-DLSFS  205 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~--------------------~~~~~~----------------~~~~~~~~~~~-~~~~~  205 (379)
                      +.||.|++||+..........                    ...+..                +..++..+..+ .+|..
T Consensus       762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~  841 (1249)
T 3sfz_A          762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS  841 (1249)
T ss_dssp             ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred             ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC
Confidence            999999999985321110000                    000000                01122333333 36788


Q ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC---c-
Q 016982          206 WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG---I-  280 (379)
Q Consensus       206 ~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~---~-  280 (379)
                      .+.+++|+|+++++++++.|+.|++||+.++. ....+.+|...|.+++|+|+|++++ ++.|+.+++|+.....   . 
T Consensus       842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~  920 (1249)
T 3sfz_A          842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI  920 (1249)
T ss_dssp             CCCEEEECSSTTEEEEECSSSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence            99999999999999999999999999998876 4577888999999999999998777 6788999999864210   0 


Q ss_pred             -------------------------EEEEEEecccc-cCCCCCccCCCcccccceeeccccccCcc--c-cccccccccc
Q 016982          281 -------------------------WTFIKFLDERK-TSSSGPKYGSQFSEAFGKLYGQSKYGVGN--D-AVESSRTRGG  331 (379)
Q Consensus       281 -------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~  331 (379)
                                               ........... ...........+++....+......+...  + ........+.
T Consensus       921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A          921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp             SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred             cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence                                     00000000000 00000000111111111111111111100  0 0112223457


Q ss_pred             ccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccc
Q 016982          332 THVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLL  375 (379)
Q Consensus       332 ~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~  375 (379)
                      +|...|++++ |++++    ++|++++.||.|++||+.+++.+.
T Consensus      1001 ~h~~~v~~l~-~s~dg----~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A         1001 GHKKAVRHIQ-FTADG----KTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp             CCSSCCCCEE-ECSSS----SCEEEECSSSBEEEEETTTTEEEC
T ss_pred             cCCCceEEEE-ECCCC----CEEEEEcCCCEEEEEECCCCceEE
Confidence            8999999999 77666    899999999999999999876653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.2e-42  Score=302.43  Aligned_cols=283  Identities=12%  Similarity=0.037  Sum_probs=228.6

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..+++++|+|++++|++++.|+.|++||+.+.  +....+..| ..+....|+|++++|++++.|+.|++||+.+++...
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  133 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE  133 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSE--ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEeccc--ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence            34568999999999999999999999999875  344444555 445556789999999999999999999999887543


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEE
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV  170 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v  170 (379)
                      .  ...|...|.+++|+|++++|++++.|+.|++||+++.+.   ...+ .+|...|.+++|+|++++|++++.|+.|++
T Consensus       134 ~--~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          134 I--DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRL  207 (420)
T ss_dssp             E--TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC---CEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             e--cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC---ceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            3  357999999999999999999999999999999988763   4555 789999999999999999999999999999


Q ss_pred             EeccccccccccccCCCccCCcccceEEEeec------------------------CCcceEEEEECCCCCEEEEEcCCC
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL------------------------SFSWAFGVKWSPSGNTLAYVGHNS  226 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~v~~~~~sp~~~~l~~~~~d~  226 (379)
                      ||+                  ++++.+..+..                        +...+.+++|+|++++|++++.||
T Consensus       208 wd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  269 (420)
T 3vl1_A          208 WEC------------------GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG  269 (420)
T ss_dssp             EET------------------TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred             eEC------------------CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence            997                  44555555543                        234556667789999999999999


Q ss_pred             eEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecCCCc-EEEEEEecccccCCCCCccCCCc
Q 016982          227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADETGI-WTFIKFLDERKTSSSGPKYGSQF  303 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  303 (379)
                      .|++||++++.........|...|.+++|+|+++ +|+ ++.|+.+++|+...... ...                    
T Consensus       270 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--------------------  329 (420)
T 3vl1_A          270 VITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE--------------------  329 (420)
T ss_dssp             CEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE--------------------
T ss_pred             eEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh--------------------
Confidence            9999999988766555556788999999999998 666 66788999999765431 111                    


Q ss_pred             ccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          304 SEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                            +                   ...|...|+++. ++ ++    ++|++++.||.|++|++.+.
T Consensus       330 ------~-------------------~~~~~~~v~~~~-~~-~~----~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          330 ------F-------------------LINEGTPINNVY-FA-AG----ALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             ------E-------------------EESTTSCEEEEE-EE-TT----EEEEEETTTEEEEEEEECCT
T ss_pred             ------h-------------------hccCCCCceEEE-eC-CC----CEEEEecCCccEEEEeccCC
Confidence                  1                   023677788886 54 33    79999999999999998763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-41  Score=297.79  Aligned_cols=324  Identities=13%  Similarity=0.071  Sum_probs=229.4

Q ss_pred             eccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecC---Cc-eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982            7 HQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQ---EK-WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         7 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~---~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      .+|.+.|++++|+| ++++||+|+.||.|++||+.+   +. ......+ .|...|.+++|+|++++|++++.|+.|++|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  138 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL  138 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            67899999999999 999999999999999999976   32 1122233 489999999999999999999999999999


Q ss_pred             ecc---CCceeeeE--------Eeec--CCCceeEEE--ECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec--CC
Q 016982           82 NQE---GSEWVPTL--------VILR--LNRAALCVQ--WSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR--HD  144 (379)
Q Consensus        82 ~~~---~~~~~~~~--------~~~~--~~~~v~~~~--~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--~~  144 (379)
                      |+.   +++.....        ....  +...+.++.  +++++++|++++.|+.|++||+++..   ....+ ..  |.
T Consensus       139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~-~~~~h~  214 (437)
T 3gre_A          139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE---RLQII-ENSPRH  214 (437)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC---EEEEE-ECCGGG
T ss_pred             EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe---eeEEE-ccCCCC
Confidence            995   44332222        1112  455666766  66889999999999999999998877   45555 44  88


Q ss_pred             cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cCCcceEEEEEC----CCCCEE
Q 016982          145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSFSWAFGVKWS----PSGNTL  219 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s----p~~~~l  219 (379)
                      ..|.+++|+|++++|++++.||.|++||+                  +.++++..+. .|...|.+++|+    |++.+|
T Consensus       215 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l  276 (437)
T 3gre_A          215 GAVSSICIDEECCVLILGTTRGIIDIWDI------------------RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV  276 (437)
T ss_dssp             CCEEEEEECTTSCEEEEEETTSCEEEEET------------------TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEEc------------------CCccEEEEEecCCCCceEEEEeccccCCCccEE
Confidence            99999999999999999999999999997                  5677888775 677899999655    468899


Q ss_pred             EEEcCCCeEEEEECCCCCceeeeeee--------------------------ecCCeeeEEEecCCcEEE-EEeCCCeEE
Q 016982          220 AYVGHNSMIYFVDDVGPSPLAQNVAF--------------------------RDLPLRDVLFVSEKMVIG-VGFDCNPMV  272 (379)
Q Consensus       220 ~~~~~d~~i~v~d~~~~~~~~~~~~~--------------------------~~~~i~~~~~s~~~~~l~-~~~d~~~~i  272 (379)
                      ++++.|+.|++||+.++.. ...+..                          |...|++++|+ ++++|+ ++.|+.+++
T Consensus       277 ~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~  354 (437)
T 3gre_A          277 VGGSSKTFLTIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM  354 (437)
T ss_dssp             EEESTTEEEEEEETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred             EEEcCCCcEEEEEcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence            9999999999999987653 233332                          55668889999 667666 667999999


Q ss_pred             EEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccc
Q 016982          273 FAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT  352 (379)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  352 (379)
                      |+................    ........+..........     ..............|.+.|++++ +.++.  ++.
T Consensus       355 wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~h~~~I~~i~-~~~~~--~~~  422 (437)
T 3gre_A          355 FSLNELSSSKAVISPSRF----SDVFIPTQVTANLTMLLRK-----MKRTSTHSVDDSLYHHDIINSIS-TCEVD--ETP  422 (437)
T ss_dssp             EETTCGGGCEEEECC--C----CCEEEEEEEETTEEEEEEE-----CC-------------CCCEEEEE-EEESS--SSE
T ss_pred             EECCCcccceEEeccccc----CceEEEEEeecceEEEEEe-----cccccccccCcccccccceeeEe-eeccC--Cce
Confidence            998765533332211000    0000000000011110000     00000111123456999999999 44441  237


Q ss_pred             eEEEeecCceEEEEe
Q 016982          353 RFTTSGLDGKIVTWD  367 (379)
Q Consensus       353 ~l~t~~~Dg~v~iW~  367 (379)
                      +|+||+.||.|+||+
T Consensus       423 ~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          423 LLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEETTSCEEEEC
T ss_pred             EEEEEcCCceEEEeC
Confidence            999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.5e-40  Score=277.82  Aligned_cols=260  Identities=18%  Similarity=0.216  Sum_probs=218.2

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEE
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVC  123 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  123 (379)
                      ......+.+|...|++++|+|++++|++++.|+.|++|++.+++....+  ..|...|.+++|+|++++|++++.|+.|+
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh--ccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            4667788999999999999999999999999999999999988865554  67899999999999999999999999999


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      +||++++.   ....+ ..|...|.+++|+|++++|++++.|+.|++||+                  ++++++..+..|
T Consensus        91 vwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~------------------~~~~~~~~~~~~  148 (312)
T 4ery_A           91 IWDVSSGK---CLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV------------------KTGKCLKTLPAH  148 (312)
T ss_dssp             EEETTTCC---EEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEET------------------TTCCEEEEECCC
T ss_pred             EEECCCCc---EEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------------------CCCEEEEEecCC
Confidence            99998877   45556 789999999999999999999999999999997                  667888889999


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEE
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWT  282 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~  282 (379)
                      ...|.+++|+|++++|++++.|+.|++||+++++........+..++..++|+|++++|+ ++.|+.+++|+......  
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--  226 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC--  226 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE--
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--
Confidence            999999999999999999999999999999987654333445567899999999999887 66788999999765431  


Q ss_pred             EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeee--eeecccCCcccceEEEeecC
Q 016982          283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCI--VPLREAGSSRITRFTTSGLD  360 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~~~~l~t~~~D  360 (379)
                       ...                                           +.+|...+.++  .+..++    +.+|++|+.|
T Consensus       227 -~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~----~~~l~sg~~d  258 (312)
T 4ery_A          227 -LKT-------------------------------------------YTGHKNEKYCIFANFSVTG----GKWIVSGSED  258 (312)
T ss_dssp             -EEE-------------------------------------------ECSSCCSSSCCCEEEECSS----SCEEEECCTT
T ss_pred             -EEE-------------------------------------------EEecCCceEEEEEEEEeCC----CcEEEEECCC
Confidence             111                                           13454443333  223233    3899999999


Q ss_pred             ceEEEEeCCCccccccC
Q 016982          361 GKIVTWDLESQEDLLNY  377 (379)
Q Consensus       361 g~v~iW~~~~~~~~~~~  377 (379)
                      |.|++||+.+++.++.+
T Consensus       259 g~i~vwd~~~~~~~~~~  275 (312)
T 4ery_A          259 NLVYIWNLQTKEIVQKL  275 (312)
T ss_dssp             SCEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCchhhhhh
Confidence            99999999998776654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.1e-39  Score=284.91  Aligned_cols=285  Identities=12%  Similarity=0.190  Sum_probs=230.1

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      ++.|+||++ ++||+|. |++|+|||..+++...+..+.+|...|++++|+|+|++|++|+.|+.|++||+.+++.+..+
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            567999975 5888875 89999999999865555566778889999999999999999999999999999999866554


Q ss_pred             EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEe
Q 016982           93 VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFS  172 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d  172 (379)
                        ..|...+.+++++  +..+++|+.|+.+++||......  ....+ .+|...+..+.|+|+++++++++.|+.+++|+
T Consensus       186 --~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~--~~~~~-~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          186 --TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH--HVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP  258 (420)
T ss_dssp             --CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             --eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccce--eeEEe-cccccceeeeeecCCCCeeeeeeccccceEEe
Confidence              6789999988875  67999999999999999877653  34445 78999999999999999999999999999999


Q ss_pred             ccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC-EEEE--EcCCCeEEEEECCCCCceeeeeeeecCC
Q 016982          173 TFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN-TLAY--VGHNSMIYFVDDVGPSPLAQNVAFRDLP  249 (379)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~  249 (379)
                      .....              .....+.....|...|.+++|+|++. ++++  |+.|+.|++||+.++.. ...+. +...
T Consensus       259 ~~~~~--------------~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-~~~~~-~~~~  322 (420)
T 4gga_A          259 SAPGE--------------GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVD-AHSQ  322 (420)
T ss_dssp             SSCCS--------------SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-EEEEE-CSSC
T ss_pred             ecccc--------------ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-ceeec-cccc
Confidence            72100              11234556677889999999999654 5554  35799999999998764 34544 4567


Q ss_pred             eeeEEEecCCcEEEEE---eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982          250 LRDVLFVSEKMVIGVG---FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS  326 (379)
Q Consensus       250 i~~~~~s~~~~~l~~~---~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (379)
                      +.++.|+++++.++++   .|+.+++|+........                                            
T Consensus       323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~--------------------------------------------  358 (420)
T 4gga_A          323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA--------------------------------------------  358 (420)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE--------------------------------------------
T ss_pred             eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE--------------------------------------------
Confidence            8999999998877643   57899999976543211                                            


Q ss_pred             cccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982          327 RTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED  373 (379)
Q Consensus       327 ~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~  373 (379)
                        .+.||.+.|++++ |++++    ++|||||.||+|+|||+.+...
T Consensus       359 --~l~gH~~~V~~l~-~spdg----~~l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          359 --ELKGHTSRVLSLT-MSPDG----ATVASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             --EECCCSSCEEEEE-ECTTS----SCEEEEETTTEEEEECCSCSSC
T ss_pred             --EEcCCCCCEEEEE-EcCCC----CEEEEEecCCeEEEEECCCCCc
Confidence              2368999999999 77766    8999999999999999976443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.6e-40  Score=287.71  Aligned_cols=295  Identities=10%  Similarity=0.067  Sum_probs=231.8

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..+....|+|++++|++|+.||.|++||+.++  +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  175 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR  175 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence            44555678999999999999999999999887  6777888999999999999999999999999999999999988655


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCE---------------------
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSV---------------------  147 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v---------------------  147 (379)
                      .+  ..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.  ..+...+                     
T Consensus       176 ~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v  250 (420)
T 3vl1_A          176 TL--IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT---TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK  250 (420)
T ss_dssp             EE--ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE---EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred             EE--cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc---eeEEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence            54  6799999999999999999999999999999998876   333331  1233444                     


Q ss_pred             EEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCC-EEEEEcCC
Q 016982          148 TSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGN-TLAYVGHN  225 (379)
Q Consensus       148 ~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~-~l~~~~~d  225 (379)
                      .+++|+|++++|++++.||.|++||+                  +.++.+..+ ..|...|.+++|+|++. +|++++.|
T Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d  312 (420)
T 3vl1_A          251 NNLEFGTYGKYVIAGHVSGVITVHNV------------------FSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN  312 (420)
T ss_dssp             CTTCSSCTTEEEEEEETTSCEEEEET------------------TTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT
T ss_pred             cceEEcCCCCEEEEEcCCCeEEEEEC------------------CCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC
Confidence            44556789999999999999999997                  455555555 45788999999999998 99999999


Q ss_pred             CeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCc
Q 016982          226 SMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQF  303 (379)
Q Consensus       226 ~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (379)
                      |.|++||++++...+..+.. |...+..+.| +++++|+ ++.|+.+++|+......-......                
T Consensus       313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~----------------  375 (420)
T 3vl1_A          313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEF----------------  375 (420)
T ss_dssp             SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECT----------------
T ss_pred             CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceec----------------
Confidence            99999999987665566666 5677877755 5676666 667889999987652211000000                


Q ss_pred             ccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          304 SEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                           .....+.+|...|.+++ |++++..++ .|+++|.+|.+++|++++
T Consensus       376 ---------------------~~~~~~~~~~~~v~~~~-~s~~~~~~g-~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          376 ---------------------ETPTFLVSNDDAVSQFC-YVSDDESNG-EVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             ---------------------TSCEEECCSSCCCCEEE-EECCSSSSC-EEEEEETTTEEEEEESCC
T ss_pred             ---------------------cCccEEccCCcceEEEE-EccCCCCcc-eEEEEcCCceEEEEeccC
Confidence                                 00002357899999999 777761111 677777899999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-39  Score=289.01  Aligned_cols=289  Identities=14%  Similarity=0.155  Sum_probs=240.3

Q ss_pred             ceeccCcc-eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            5 AVHQFAQC-ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         5 ~~~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .+.+|... ++++.+  ++++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+|++ +|++++.|++|++||+
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC--cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence            56788777 466666  5689999999999999999987  7888999999999999999988 9999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCeEEEEEeecCCcee--------------------EEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWS--PKENKFAVGSGAKTVCICYYEQENNWW--------------------VSKLIRK  141 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~~~~~~~~~~--------------------~~~~~~~  141 (379)
                      .+++....+  ..|...|.+++|+  ++++++++++.|+.|++||++......                    ....+ .
T Consensus       191 ~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  267 (464)
T 3v7d_B          191 KKGCCTHVF--EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-R  267 (464)
T ss_dssp             TTTEEEEEE--CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-C
T ss_pred             CCCcEEEEE--CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-c
Confidence            999865554  6799999999998  578999999999999999998765321                    12233 6


Q ss_pred             cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEE
Q 016982          142 RHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       142 ~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  221 (379)
                      +|...+.++  +++++++++++.|+.|++||+                  .+++++..+.+|...|.+++|+|++++|++
T Consensus       268 ~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  327 (464)
T 3v7d_B          268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDV------------------AQMKCLYILSGHTDRIYSTIYDHERKRCIS  327 (464)
T ss_dssp             CCSSCEEEE--EEETTEEEEEETTSCEEEEET------------------TTTEEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             CccceEEEE--cCCCCEEEEEeCCCeEEEEEC------------------CCCcEEEEecCCCCCEEEEEEcCCCCEEEE
Confidence            788888877  567899999999999999997                  678888999999999999999999999999


Q ss_pred             EcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982          222 VGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS  301 (379)
Q Consensus       222 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
                      ++.|+.|++||+.+++ .+..+..|...|.+++|++ ..+++++.|+.+++|+........  .                
T Consensus       328 g~~dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~--~----------------  387 (464)
T 3v7d_B          328 ASMDTTIRIWDLENGE-LMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKF--S----------------  387 (464)
T ss_dssp             EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEE--E----------------
T ss_pred             EeCCCcEEEEECCCCc-EEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceee--e----------------
Confidence            9999999999998876 5578888999999999973 344457889999999987543111  0                


Q ss_pred             CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                                                   ..|...+..++ +++++    ++|++|+ ||.|++||+.+++.++.
T Consensus       388 -----------------------------~~~~~~~~~~~-~~~~~----~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          388 -----------------------------YHHTNLSAITT-FYVSD----NILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             -----------------------------EECTTCCCEEE-EEECS----SEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             -----------------------------ecCCCCccEEE-EEeCC----CEEEEec-CCeEEEEECCCCcEEeh
Confidence                                         12444555666 66665    8999988 99999999999988765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=282.03  Aligned_cols=270  Identities=17%  Similarity=0.260  Sum_probs=228.6

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC--CCEEEEEeCCCeEEEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVW   81 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw   81 (379)
                      ..+.+|.+.|++++|+|++++||+|+.||.|++|++.....+....+.+|...|.+++|+|+  +++|++++.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            45788999999999999999999999999999999986656888899999999999999987  8999999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-----
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-----  154 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-----  154 (379)
                      |+.+++.........|...|.+++|+|+  +++|++++.|+.|++||++...... ...+ ..|...|.+++|+|     
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIII-DAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC-EEEE-ECCTTCEEEEEECCCC---
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee-eEEe-cCCCCceEEEEEcCccccc
Confidence            9999875555566778999999999999  9999999999999999998875322 2233 68999999999999     


Q ss_pred             --------CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC---CCEEEEEc
Q 016982          155 --------NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS---GNTLAYVG  223 (379)
Q Consensus       155 --------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~  223 (379)
                              ++++|++++.|+.|++||+...              .........+..|...|.+++|+|+   +++|++++
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSD--------------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETT--------------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCC--------------CcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence                    6899999999999999997210              0123455677889999999999999   89999999


Q ss_pred             CCCeEEEEECCCCCce----eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecc
Q 016982          224 HNSMIYFVDDVGPSPL----AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDE  289 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~  289 (379)
                      .||.|++||+......    ......|...|.+++|+|++++|+ ++.|+.+++|+.+..+.|........
T Consensus       229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  299 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQ  299 (379)
T ss_dssp             TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEEEC-
T ss_pred             CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccccceec
Confidence            9999999999876321    122233778899999999999877 67899999999998887887765544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.7e-40  Score=280.89  Aligned_cols=306  Identities=15%  Similarity=0.160  Sum_probs=218.5

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEEeccCCCceEEEEEcC--CCCEEEEEeCCCeEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQIVSGIDWSV--RSNRIVTVSHDRNSY   79 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~   79 (379)
                      ..+.+|.+.|++++|+|++++||+|+.||.|++||+.++  ..+....+.+|...|.+++|+|  ++++|++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            346789999999999999999999999999999999864  2357788889999999999999  589999999999999


Q ss_pred             EEeccCCce-------eeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeE---EEEE------ee
Q 016982           80 VWNQEGSEW-------VPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWV---SKLI------RK  141 (379)
Q Consensus        80 vw~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~---~~~~------~~  141 (379)
                      +||+.+++.       ........|...|.+++|+|+  ++++++++.|+.|++||++.......   ....      ..
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            999987632       233444678999999999999  99999999999999999987653111   1111      02


Q ss_pred             cCCcCEEEEEEcCC---CcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc--ceEEEeecCCcceEEEEECCCC
Q 016982          142 RHDSSVTSVAWHPN---NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG--EQILQLDLSFSWAFGVKWSPSG  216 (379)
Q Consensus       142 ~~~~~v~~~~~~p~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~  216 (379)
                      .|...+.+++|+|+   +.++++++.++.+.+|+.                  ..+  ..+..+..|...|.+++|+|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~h~~~i~~~~~~p~~  226 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG------------------KDGKLHVAAKLPGHKSLIRSISWAPSI  226 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC------------------TTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc------------------CCCceeeeeecCCCCcceeEEEECCCC
Confidence            67789999999997   899999999999977764                  223  3467788899999999999998


Q ss_pred             ----CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEe-CCC-eEEEEecCCCcEEEEEEeccc
Q 016982          217 ----NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGF-DCN-PMVFAADETGIWTFIKFLDER  290 (379)
Q Consensus       217 ----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-d~~-~~i~~~~~~~~~~~~~~~~~~  290 (379)
                          ++|++++.||.|++||++..... .....+........+++....++.+. ++. ...+...........      
T Consensus       227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  299 (351)
T 3f3f_A          227 GRWYQLIATGCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL------  299 (351)
T ss_dssp             SCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEEEEE------
T ss_pred             CCcceEEEEEcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCcccccccccccccccceeeeecccccccEE------
Confidence                89999999999999998876433 22222222333334444443333221 111 101000000000110      


Q ss_pred             ccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          291 KTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                                           ..+.+|...|++++ |++++    ++|+||+.||.|++|++.+
T Consensus       300 -------------------------------------~~~~~h~~~v~~~~-~s~~~----~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          300 -------------------------------------SEHDDHNGEVWSVS-WNLTG----TILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             -------------------------------------EEECTTSSCEEEEE-ECSSS----CCEEEEETTSCEEEEEECT
T ss_pred             -------------------------------------EEEecccccEEEEE-EcCCC----CEEEEecCCCcEEEEecCc
Confidence                                                 13368999999999 77665    8999999999999999998


Q ss_pred             cccccc
Q 016982          371 QEDLLN  376 (379)
Q Consensus       371 ~~~~~~  376 (379)
                      ++.++.
T Consensus       338 ~~~~~~  343 (351)
T 3f3f_A          338 SNEFKC  343 (351)
T ss_dssp             TSCEEE
T ss_pred             Ccchhh
Confidence            765543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-39  Score=287.91  Aligned_cols=319  Identities=11%  Similarity=0.107  Sum_probs=230.6

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc---------eEEEEEeccCC------------CceEEEEEcCCC
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK---------WEKLHVLQKHD------------QIVSGIDWSVRS   66 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~---------~~~~~~~~~~~------------~~v~~~~~~~~~   66 (379)
                      .+.+.|++++|+|+|++||+|+.||.|+||++.+++         ++....+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999998752         23578889998            889999999998


Q ss_pred             --CEEEEEeCCCeEEEEeccCCceee--------------------------------------eEEeecCCCceeEEEE
Q 016982           67 --NRIVTVSHDRNSYVWNQEGSEWVP--------------------------------------TLVILRLNRAALCVQW  106 (379)
Q Consensus        67 --~~l~~~~~d~~i~vw~~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~  106 (379)
                        .+|++++.|+.|++||+.+++...                                      ......|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              799999999999999997654311                                      0112568899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEeecCCceeEEEEE------eecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccc
Q 016982          107 SPKENKFAVGSGAKTVCICYYEQENNWWVSKLI------RKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVD  179 (379)
Q Consensus       107 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~  179 (379)
                      +|++++|+++ .|+.|++||++....  ....+      ...|...|.+++|+|++ ++|++++.|+.|++||+      
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~------  256 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDR--SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM------  256 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEE--EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET------
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCc--eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC------
Confidence            9999999998 799999999984331  12211      15789999999999998 99999999999999997      


Q ss_pred             cccccCCCccCCcccce----EEEeecCCc------------ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          180 IKEKKEGTSSDTKFGEQ----ILQLDLSFS------------WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~------------~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                                  +.++.    +..+..|..            .|.+++|+|+|++|++++. +.|++||++.....+..+
T Consensus       257 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~  323 (447)
T 3dw8_B          257 ------------RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY  323 (447)
T ss_dssp             ------------TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE
T ss_pred             ------------cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee
Confidence                        33333    556666654            8999999999999999988 999999998744455777


Q ss_pred             eeecCC---------------eeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccccc
Q 016982          244 AFRDLP---------------LRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAF  307 (379)
Q Consensus       244 ~~~~~~---------------i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (379)
                      ..|...               +..++|+|++++|+ ++.|+.+++|+........+....+.. ...  ....      .
T Consensus       324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~-~~~--~~~~------~  394 (447)
T 3dw8_B          324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENN-KPR--TVLK------P  394 (447)
T ss_dssp             ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTC-CTT--CBCC------C
T ss_pred             eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccc-ccc--cccC------C
Confidence            766532               23499999999887 667899999998876543222111100 000  0000      0


Q ss_pred             ceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          308 GKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                      ..+.......     ..........+...|..++ |+|++    ++||+++.|+ +++|..
T Consensus       395 ~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~-~~p~~----~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          395 RKVCASGKRK-----KDEISVDSLDFNKKILHTA-WHPKE----NIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CCEECSSCCC-----TTCEEGGGCCTTSCCCEEE-ECSSS----SEEEEECSSC-EEEEEC
T ss_pred             ccccccCCcc-----cccccccccccCCceeEEE-ECCCC----CEEEEEecce-eeeecc
Confidence            0000000000     0000001124567899999 66555    8999999886 777764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.1e-39  Score=271.36  Aligned_cols=258  Identities=18%  Similarity=0.219  Sum_probs=206.7

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEE
Q 016982           48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCIC  125 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~  125 (379)
                      ..+.+|...|.+++|+|+|++|++++.|++|++||+.+........+.+|..+|.+++|+|+  +++|++++.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45788999999999999999999999999999999976532233445789999999999874  8999999999999999


Q ss_pred             EeecCCceeEEEEEeecCCcCEEEEEEcCC--CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          126 YYEQENNWWVSKLIRKRHDSSVTSVAWHPN--NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      |++.+... ....+ ..|...|.+++|+|+  +.+|++++.|+.|++||+..                ........+..|
T Consensus        83 d~~~~~~~-~~~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~----------------~~~~~~~~~~~h  144 (297)
T 2pm7_B           83 KEENGRWS-QIAVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE----------------NGTTSPIIIDAH  144 (297)
T ss_dssp             EBSSSCBC-CCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS----------------SSCBCCEEEECC
T ss_pred             EcCCCceE-EEEEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC----------------CCceeeeeeecc
Confidence            99876411 12334 679999999999997  78999999999999999721                001123556789


Q ss_pred             CcceEEEEECCC-------------CCEEEEEcCCCeEEEEECCCCCc---eeeeeeeecCCeeeEEEecCC---cEEE-
Q 016982          204 FSWAFGVKWSPS-------------GNTLAYVGHNSMIYFVDDVGPSP---LAQNVAFRDLPLRDVLFVSEK---MVIG-  263 (379)
Q Consensus       204 ~~~v~~~~~sp~-------------~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~i~~~~~s~~~---~~l~-  263 (379)
                      ...|.+++|+|+             +++|++++.|+.|++||+++...   +...+.+|...|.+++|+|++   .+|+ 
T Consensus       145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las  224 (297)
T 2pm7_B          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS  224 (297)
T ss_dssp             SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE
Confidence            999999999997             57999999999999999887653   345677899999999999984   6776 


Q ss_pred             EEeCCCeEEEEecCCC-cEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeee
Q 016982          264 VGFDCNPMVFAADETG-IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVP  342 (379)
Q Consensus       264 ~~~d~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  342 (379)
                      ++.|+.+++|+.+... .|.... +                                         ...+|...|.+++ 
T Consensus       225 ~s~D~~v~iWd~~~~~~~~~~~~-~-----------------------------------------~~~~~~~~v~~~~-  261 (297)
T 2pm7_B          225 VSQDRTCIIWTQDNEQGPWKKTL-L-----------------------------------------KEEKFPDVLWRAS-  261 (297)
T ss_dssp             EETTSCEEEEEESSTTSCCEEEE-S-----------------------------------------SSSCCSSCEEEEE-
T ss_pred             EECCCcEEEEEeCCCCCccceee-e-----------------------------------------ecccCCCcEEEEE-
Confidence            6789999999876532 122100 0                                         0135788999999 


Q ss_pred             ecccCCcccceEEEeecCceEEEEeCCC
Q 016982          343 LREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       343 ~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      |++++    ++||+++.||.|++|+...
T Consensus       262 ~s~~g----~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          262 WSLSG----NVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             ECSSS----CCEEEEETTSCEEEEEECT
T ss_pred             ECCCC----CEEEEEcCCCcEEEEEECC
Confidence            77666    8999999999999999873

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.5e-39  Score=306.88  Aligned_cols=292  Identities=16%  Similarity=0.137  Sum_probs=245.9

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|.+.|++++|+|++++||+++.||.|++||+.++  +.+..+.+|..+|.+++|+|++++|++++.|+.|++||+
T Consensus         7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            356789999999999999999999999999999999887  788889999999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEEEEe
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFLATT  162 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~  162 (379)
                      .+++....+  ..|...|.+++|+|++++|++++.||.|++||++.+..  ....+ ..|...|.+++|+| +++.|+++
T Consensus        85 ~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~-~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           85 NTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA--LEQTF-EGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             TTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE--EEEEE-ECCSSCEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEE--ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce--EEEEE-cCCCCcEEEEEEEcCCCCEEEEE
Confidence            999866555  67899999999999999999999999999999987642  34455 78999999999999 88999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-CcceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCce
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-FSWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +.||.|++||+                  ..+.....+..+ ...+..++|+|  ++.+|++++.||.|++||+.++. .
T Consensus       160 ~~dg~v~vwd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~  220 (814)
T 3mkq_A          160 CLDRTVKVWSL------------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-C  220 (814)
T ss_dssp             ETTSEEEEEET------------------TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-E
T ss_pred             eCCCeEEEEEC------------------CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-E
Confidence            99999999997                  344445555444 37899999999  99999999999999999998876 4


Q ss_pred             eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          240 AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      ...+..|...|.+++|+|++.+++ ++.|+.+++|+........                                    
T Consensus       221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~------------------------------------  264 (814)
T 3mkq_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK------------------------------------  264 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE------------------------------------
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE------------------------------------
Confidence            577888999999999999999887 5568999999876543111                                    


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                .+..|...|.+++ +++++   ...+++++.|+.+.+|++..+
T Consensus       265 ----------~~~~~~~~v~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          265 ----------TLNVGLERSWCIA-THPTG---RKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             ----------EECCSSSSEEEEE-ECTTC---GGGEEEEEETTEEEEEECSCC
T ss_pred             ----------EeecCCCcEEEEE-EccCC---CceEEEEEeCCCEEEEEcCCC
Confidence                      1145778899999 66665   133355555777889988654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.1e-39  Score=282.14  Aligned_cols=311  Identities=14%  Similarity=0.176  Sum_probs=230.8

Q ss_pred             ceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEE-----------eccCCCceEEEEEcC-CCCEEEE
Q 016982            5 AVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHV-----------LQKHDQIVSGIDWSV-RSNRIVT   71 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~-~~~~l~~   71 (379)
                      .+.+|.++|++++|+| ++++|++|+.||.|++||+.++.......           ..+|...|.+++|+| ++++|++
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s  117 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS  117 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence            3567999999999999 99999999999999999998763211111           135899999999999 7789999


Q ss_pred             EeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC---CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           72 VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK---ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        72 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      ++.|+.|++||+.+++....+   .+...+.++.|+|.   +.++++++.|+.|++||++.+.   ....+ ..|...|.
T Consensus       118 ~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~-~~~~~~v~  190 (408)
T 4a11_B          118 SSFDKTLKVWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS---CSHIL-QGHRQEIL  190 (408)
T ss_dssp             EETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---CCEEE-CCCCSCEE
T ss_pred             EeCCCeEEEeeCCCCccceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---eeeee-cCCCCcEE
Confidence            999999999999998855554   36788999999984   4599999999999999998876   34555 78999999


Q ss_pred             EEEEcCCCc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCe
Q 016982          149 SVAWHPNNV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM  227 (379)
Q Consensus       149 ~~~~~p~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  227 (379)
                      +++|+|+++ +|++++.||.|++||+...............  ............|...|.+++|+|++++|++++.|+.
T Consensus       191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG--KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT--CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc--ccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            999999997 6899999999999998421100000000000  0001111222567889999999999999999999999


Q ss_pred             EEEEECCCCCceeeeeeee------cCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982          228 IYFVDDVGPSPLAQNVAFR------DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS  301 (379)
Q Consensus       228 i~v~d~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
                      |++||+.++... .....+      ......+.....+.+++++.++.+.+|+........                   
T Consensus       269 i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------------------  328 (408)
T 4a11_B          269 MRLWNSSNGENT-LVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT-------------------  328 (408)
T ss_dssp             EEEEETTTCCBC-CCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE-------------------
T ss_pred             EEEEECCCCccc-eeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee-------------------
Confidence            999999887643 222111      111222233345677788999999999976543221                   


Q ss_pred             CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                                                 .+.+|...|++++ |++++    ++|+||+.||.|++||+.+++.+..
T Consensus       329 ---------------------------~~~~~~~~v~~~~-~s~~~----~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          329 ---------------------------MLKGHYKTVDCCV-FQSNF----QELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             ---------------------------EECCCSSCEEEEE-EETTT----TEEEEEETTSCEEEEEECC------
T ss_pred             ---------------------------eeccCCCeEEEEE-EcCCC----CEEEEECCCCeEEEEeCCCCCccCC
Confidence                                       2257999999999 77665    8999999999999999998776643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.5e-39  Score=276.62  Aligned_cols=261  Identities=15%  Similarity=0.185  Sum_probs=219.4

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      .....+.+|...|++++|+|++++|++++.|++|++||..+++....+  ..+...|.+++|+|++..+++++.|+.+++
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV--TMPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE--ecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            466788999999999999999999999999999999999988755554  557889999999999999999999999999


Q ss_pred             EEeecCCc---eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          125 CYYEQENN---WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       125 ~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      |++.....   ......+ ..|...|.+++|+|+++.|++++.|++|++||+                  .+++++..+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~------------------~~~~~~~~~~  193 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDV------------------ESGQLLQSFH  193 (354)
T ss_dssp             EECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEET------------------TTCCEEEEEE
T ss_pred             EEEeccccccccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeC------------------CCCeEEEEEc
Confidence            99865421   0112344 689999999999999999999999999999997                  6788899999


Q ss_pred             cCCcceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982          202 LSFSWAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       202 ~~~~~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      +|...|.+++|+|  ++++|++++.|+.|++||++++. .+..+..|...|.+++|+|++.+|+ ++.|+.+++|+....
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~  272 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD  272 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            9999999999988  57899999999999999999876 4578888999999999999999887 667899999997654


Q ss_pred             CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee
Q 016982          279 GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG  358 (379)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~  358 (379)
                      .....   +.                                         ...+...+.+++ |++++    ++|++|+
T Consensus       273 ~~~~~---~~-----------------------------------------~~~~~~~~~~~~-~s~~g----~~l~~g~  303 (354)
T 2pbi_B          273 REVAI---YS-----------------------------------------KESIIFGASSVD-FSLSG----RLLFAGY  303 (354)
T ss_dssp             EEEEE---EC-----------------------------------------CTTCCSCEEEEE-ECTTS----SEEEEEE
T ss_pred             cEEEE---Ec-----------------------------------------CCCcccceeEEE-EeCCC----CEEEEEE
Confidence            31111   00                                         012344688888 77666    8999999


Q ss_pred             cCceEEEEeCCCcccccc
Q 016982          359 LDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       359 ~Dg~v~iW~~~~~~~~~~  376 (379)
                      .||.|++||+.+++.+..
T Consensus       304 ~d~~i~vwd~~~~~~~~~  321 (354)
T 2pbi_B          304 NDYTINVWDVLKGSRVSI  321 (354)
T ss_dssp             TTSCEEEEETTTCSEEEE
T ss_pred             CCCcEEEEECCCCceEEE
Confidence            999999999988776544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-40  Score=283.83  Aligned_cols=248  Identities=15%  Similarity=0.203  Sum_probs=202.0

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEE--EEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEK--LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+|...|++++|+|++++| +++.||.|+|||+.+++...  .....+|...|++++|+|++++|++++.|+.|++||+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            35688999999999998655 56789999999998763221  2234579999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEE-eecCCcCEEEEEEcCCC-cEEE
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLI-RKRHDSSVTSVAWHPNN-VFLA  160 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~-~~l~  160 (379)
                      .+++....+  ..|...|.+++|+|++. ++++++.|+.|++||+++++.   ...+ ...+...+.+++|+|++ .+|+
T Consensus       169 ~~~~~~~~~--~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~---~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          169 SQKAVLKSY--NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP---ATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             TTTEEEEEE--CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC---BCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             CCCcEEEEE--cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce---eeeeeeccccccccchhhhhcccceEE
Confidence            999866555  67999999999999875 789999999999999988763   2222 14567789999999975 7899


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCce
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG-NTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +|+.|+.|++||+                  +.++++..+..|...|++++|+|++ ++|++++.|++|+|||+++++ +
T Consensus       244 ~g~~d~~i~~wd~------------------~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-~  304 (357)
T 4g56_B          244 CGDETGNVSLVNI------------------KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE-V  304 (357)
T ss_dssp             EEESSSCEEEEES------------------SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE-E
T ss_pred             EeecccceeEEEC------------------CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc-E
Confidence            9999999999997                  6677888899999999999999987 579999999999999998765 3


Q ss_pred             eeeeeeecCCeeeEEEec-CCcEEE-EEeCCCeEEEEecCCC
Q 016982          240 AQNVAFRDLPLRDVLFVS-EKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~-~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      +.. .+|...|++++|+| ++++|+ ++.|+.|++|+....+
T Consensus       305 ~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          305 FRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             eEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            344 46999999999998 788777 6789999999986544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-39  Score=275.73  Aligned_cols=255  Identities=20%  Similarity=0.309  Sum_probs=196.5

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC-----ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-----KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      |...|++++|+|++++||+|+.|+.|++|++...     ..+.+..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            8999999999999999999999999999998532     23567888999999999999999999999999999999999


Q ss_pred             cCC-c-eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC--CcEE
Q 016982           84 EGS-E-WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN--NVFL  159 (379)
Q Consensus        84 ~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l  159 (379)
                      ... . ......+..|...|.+++|+|++++|++++.|+.|++||...... .....+ .+|...|.+++|+|+  +.+|
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~-~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-ECVAVL-NGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEE-CCCSSCEEEEEECCSSSSCEE
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-eEEEEc-cCCCCcEEEEEecCCCCeeEE
Confidence            532 1 122333467999999999999999999999999999999876531 134455 789999999999998  6789


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec-CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS-  237 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~-  237 (379)
                      ++++.|+.|++||+......          ......+...+.. |...|.+++|++++ +|++++.||.|++||..++. 
T Consensus       215 ~s~s~D~~v~iw~~~~~~~~----------~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~  283 (330)
T 2hes_X          215 CSGSDDSTVRVWKYMGDDED----------DQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW  283 (330)
T ss_dssp             EEEETTSCEEEEEEEEECTT----------SCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE
T ss_pred             EEEeCCCeEEEEEecCCCcc----------ccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce
Confidence            99999999999997321100          0011134445554 88899999999765 78999999999999987653 


Q ss_pred             -ceeeeeeeecC-CeeeEEEec--CCcEEE-EEeCCCeEEEEec
Q 016982          238 -PLAQNVAFRDL-PLRDVLFVS--EKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       238 -~~~~~~~~~~~-~i~~~~~s~--~~~~l~-~~~d~~~~i~~~~  276 (379)
                       ........|.. .|.+++|+|  ++++|+ ++.|+.+++|+..
T Consensus       284 ~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          284 KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred             EEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence             12223345666 899999999  677776 6789999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.7e-39  Score=271.05  Aligned_cols=243  Identities=14%  Similarity=0.166  Sum_probs=207.7

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|+|++++|++|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            46789999999999999999999999999999999988  7888999999999999999999999999999999999997


Q ss_pred             CCceeeeEEeecCCCceeEEEECCC------CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPK------ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      ... .  ..+.+|...|.++.|+|.      +..+++++.|+.|++||++...   ....+ .+|...|.+++|+|++++
T Consensus       138 ~~~-~--~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~-~~h~~~v~~~~~sp~g~~  210 (319)
T 3frx_A          138 GQC-L--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ---IEADF-IGHNSNINTLTASPDGTL  210 (319)
T ss_dssp             SCE-E--EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE---EEEEE-CCCCSCEEEEEECTTSSE
T ss_pred             CCe-E--EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch---hheee-cCCCCcEEEEEEcCCCCE
Confidence            543 2  334679999999999985      4489999999999999998765   34555 789999999999999999


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      |++++.|+.|++||+                  ..++++..+.. ...|.+++|+|++.+|++++. +.+++|++.... 
T Consensus       211 l~s~~~dg~i~iwd~------------------~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~-  269 (319)
T 3frx_A          211 IASAGKDGEIMLWNL------------------AAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQY-  269 (319)
T ss_dssp             EEEEETTCEEEEEET------------------TTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEE-
T ss_pred             EEEEeCCCeEEEEEC------------------CCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCe-
Confidence            999999999999997                  56677777765 467999999999999988765 459999987643 


Q ss_pred             eeeeee--------eecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          239 LAQNVA--------FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       239 ~~~~~~--------~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      ....+.        .+...+.+++|+|||++|+ ++.|+.+++|+...
T Consensus       270 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            222222        2456788999999999888 66788999998653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1e-38  Score=277.88  Aligned_cols=251  Identities=17%  Similarity=0.199  Sum_probs=209.8

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..|++++|+|+|++||+|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+++...
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence            35999999999999999999999999999987  7888899999999999999999999999999999999999987554


Q ss_pred             eEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEe------ecCCcCEEEEEEcCCCcEEEEee
Q 016982           91 TLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIR------KRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .+   .+...+.+++|+| ++++|++++.|+.|++||++++..   ...+.      .+|...|.+++|+|++++|++++
T Consensus       202 ~~---~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~---~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  275 (393)
T 1erj_A          202 TL---SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL---VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  275 (393)
T ss_dssp             EE---ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE---EEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EE---EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE---EEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence            44   3567899999999 899999999999999999987762   22221      46889999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      .|+.|++||+........      ......+.+...+.+|...|.+++|+|++.+|++++.|+.|++||+.++. .+..+
T Consensus       276 ~d~~v~~wd~~~~~~~~~------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~-~~~~l  348 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSD------SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLML  348 (393)
T ss_dssp             TTSEEEEEEC---------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-EEEEE
T ss_pred             CCCEEEEEECCCCCCccc------ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEE
Confidence            999999999742111000      00012345677788999999999999999999999999999999998876 45788


Q ss_pred             eeecCCeeeEEEec------CCcEEE-EEeCCCeEEEEec
Q 016982          244 AFRDLPLRDVLFVS------EKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       244 ~~~~~~i~~~~~s~------~~~~l~-~~~d~~~~i~~~~  276 (379)
                      .+|...|.+++|++      ++.+|+ ++.|+.+++|+..
T Consensus       349 ~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            89999999999986      577777 6789999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-38  Score=281.67  Aligned_cols=287  Identities=15%  Similarity=0.187  Sum_probs=232.9

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      +|...|++++|  ++++|++|+.||.|++||+.++  +....+.+|...|.+++|  ++++|++++.||.|++||+.+++
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence            45677998887  7899999999999999999887  678889999999999999  68899999999999999999998


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      ....+  ..|...|.+++|+  +..+++++.|+.|++||+...........+ .+|...|.+++|  +++++++++.||.
T Consensus       205 ~~~~~--~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~  277 (435)
T 1p22_A          205 MLNTL--IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRT  277 (435)
T ss_dssp             EEEEE--CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             EEEEE--cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence            66555  6789999999997  459999999999999999887754333555 789999999999  7889999999999


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD  247 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  247 (379)
                      |++||+                  .+++.+..+..|...|.+++|  +++++++++.||.|++||++++. .+..+..|.
T Consensus       278 i~vwd~------------------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~  336 (435)
T 1p22_A          278 IKVWNT------------------STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA-CLRVLEGHE  336 (435)
T ss_dssp             EEEEET------------------TTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC-EEEEECCCS
T ss_pred             EEEEEC------------------CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC-EEEEEeCCc
Confidence            999997                  677888999999999999999  47899999999999999999876 457888899


Q ss_pred             CCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982          248 LPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS  326 (379)
Q Consensus       248 ~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (379)
                      ..|.+++|  ++.+|+ ++.|+.+++|+......-         . ..          ......                
T Consensus       337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~---------~-~~----------~~~~~~----------------  378 (435)
T 1p22_A          337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDP---------R-AP----------AGTLCL----------------  378 (435)
T ss_dssp             SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTST---------T-SC----------TTTTEE----------------
T ss_pred             CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCc---------c-cc----------ccchhe----------------
Confidence            99999999  566666 678999999986532100         0 00          000000                


Q ss_pred             cccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccc
Q 016982          327 RTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDL  374 (379)
Q Consensus       327 ~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~  374 (379)
                       ..+.+|.+.|++++ +  ++    .+|++|+.||.|++||+.+....
T Consensus       379 -~~~~~h~~~v~~l~-~--~~----~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          379 -RTLVEHSGRVFRLQ-F--DE----FQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             -EEECCCSSCCCCEE-E--CS----SCEEECCSSSEEEEEC-------
T ss_pred             -eeccCCCCCeEEEE-e--CC----CEEEEEeCCCEEEEEECCCCCCc
Confidence             12368999999999 4  33    78999999999999999876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.6e-38  Score=265.23  Aligned_cols=283  Identities=11%  Similarity=0.172  Sum_probs=224.6

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      .++|+||+++ +||+| .|++|+|||+.+++......+.+|...|++++|+|++++|++|+.|++|++||+++++....+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4679999876 77776 589999999999854444555678889999999999999999999999999999999866655


Q ss_pred             EeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEe
Q 016982           93 VILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFS  172 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d  172 (379)
                        ..|...+.++.+  ++..+++++.++.+++|+......  ....+ .+|...+..+.+.+++++|++++.|+.|++||
T Consensus       106 --~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd  178 (318)
T 4ggc_A          106 --TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH--HVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP  178 (318)
T ss_dssp             --ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC--EEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             --cCccceEEEeec--CCCEEEEEecCCceEeeecCCCce--eEEEE-cCccCceEEEEEcCCCCEEEEEecCcceeEEE
Confidence              568877776655  567999999999999998877653  34444 78999999999999999999999999999999


Q ss_pred             ccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE---EEEcCCCeEEEEECCCCCceeeeeeeecCC
Q 016982          173 TFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL---AYVGHNSMIYFVDDVGPSPLAQNVAFRDLP  249 (379)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l---~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  249 (379)
                      +...+              ...........+.+.|..++++|++..+   ++++.++.|++||.......  ....+...
T Consensus       179 ~~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~--~~~~~~~~  242 (318)
T 4ggc_A          179 SAPGE--------------GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--SAVDAHSQ  242 (318)
T ss_dssp             SSCBT--------------TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--EEEECSSC
T ss_pred             CCCCc--------------ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--ccccceee
Confidence            73110              1122334455677889999999976543   35678899999998876532  33446778


Q ss_pred             eeeEEEecCCcEEEE-E--eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccc
Q 016982          250 LRDVLFVSEKMVIGV-G--FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESS  326 (379)
Q Consensus       250 i~~~~~s~~~~~l~~-~--~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (379)
                      +..+.|+|++..+++ +  .|+.+++|+........                                            
T Consensus       243 v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~--------------------------------------------  278 (318)
T 4ggc_A          243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA--------------------------------------------  278 (318)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE--------------------------------------------
T ss_pred             eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE--------------------------------------------
Confidence            999999999887663 2  58899999976543221                                            


Q ss_pred             cccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          327 RTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       327 ~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                        .+.+|.+.|++++ |++++    ++|||||.||+|+|||+.+.
T Consensus       279 --~l~gH~~~V~~l~-~spdg----~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          279 --ELKGHTSRVLSLT-MSPDG----ATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             --EECCCSSCEEEEE-ECTTS----SCEEEEETTTEEEEECCSCC
T ss_pred             --EEcCCCCCEEEEE-EcCCC----CEEEEEecCCeEEEEECCCC
Confidence              2258999999999 77666    89999999999999999764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.3e-40  Score=284.66  Aligned_cols=277  Identities=17%  Similarity=0.205  Sum_probs=224.1

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCE
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENK  112 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  112 (379)
                      .+..|+..+.  ....++.+|.+.|++++|+|++++|++++.|++|++||+.+++....+  ..|...|.+++|+|++++
T Consensus        47 ~~~~~~~~~~--~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~--~~h~~~v~~~~~s~~g~~  122 (380)
T 3iz6_a           47 TAVSFNPTDL--VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI--KLHCPWVMECAFAPNGQS  122 (380)
T ss_dssp             GCCCCCCCCC--EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE--ECCCTTCCCCEECTTSSE
T ss_pred             ccccccccee--EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE--ecCCCCEEEEEECCCCCE
Confidence            3444555443  678899999999999999999999999999999999999998865554  678899999999999999


Q ss_pred             EEEEeCCCeEEEEEeecCCc----eeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCC
Q 016982          113 FAVGSGAKTVCICYYEQENN----WWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGT  187 (379)
Q Consensus       113 l~~~~~d~~v~i~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  187 (379)
                      |++++.|+.+++|++.....    ......+ .+|.+.+.++.|.|++ ..|++++.|+.|++||+              
T Consensus       123 las~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~--------------  187 (380)
T 3iz6_a          123 VACGGLDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV--------------  187 (380)
T ss_dssp             EEECCSSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT--------------
T ss_pred             EEEeeCCCcEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc--------------
Confidence            99999999999999875321    1122334 7899999999999974 67999999999999997              


Q ss_pred             ccCCcccceEEEe-----ecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcE
Q 016982          188 SSDTKFGEQILQL-----DLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMV  261 (379)
Q Consensus       188 ~~~~~~~~~~~~~-----~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  261 (379)
                          .+++++..+     .+|...|.+++|+| ++++|++++.|+.|++||++.....+..+.+|...|.+++|+|++++
T Consensus       188 ----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  263 (380)
T 3iz6_a          188 ----TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR  263 (380)
T ss_dssp             ----TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE
T ss_pred             ----CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe
Confidence                566666665     57888999999987 88999999999999999998665566888899999999999999998


Q ss_pred             EE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeee
Q 016982          262 IG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCI  340 (379)
Q Consensus       262 l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  340 (379)
                      |+ ++.|+.+++|+...........   ....                                    ....+...|+++
T Consensus       264 l~s~s~D~~i~lwd~~~~~~~~~~~---~~~~------------------------------------~~~~~~~~v~~~  304 (380)
T 3iz6_a          264 FGTGSDDGTCRLFDMRTGHQLQVYN---REPD------------------------------------RNDNELPIVTSV  304 (380)
T ss_dssp             EEEECSSSCEEEEETTTTEEEEEEC---CCCS------------------------------------SSCCSSCSCSEE
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEec---cccc------------------------------------ccccccCceEEE
Confidence            87 6688999999987653222211   0000                                    002344568899


Q ss_pred             eeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          341 VPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       341 ~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                      + |++++    ++|++|+.||.|++||+.+++.+..
T Consensus       305 ~-~s~~g----~~l~~g~~dg~i~vwd~~~~~~~~~  335 (380)
T 3iz6_a          305 A-FSISG----RLLFAGYSNGDCYVWDTLLAEMVLN  335 (380)
T ss_dssp             E-ECSSS----SEEEEECTTSCEEEEETTTCCEEEE
T ss_pred             E-ECCCC----CEEEEEECCCCEEEEECCCCceEEE
Confidence            9 77666    8999999999999999988766543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1e-38  Score=272.84  Aligned_cols=246  Identities=14%  Similarity=0.145  Sum_probs=200.4

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|+|++.+|++|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            46789999999999999999999999999999999987  6778899999999999999999999999999999999998


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCC----------CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKE----------NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      ............|...|.+++|+|++          .++++++.|+.|++||... .   ....+ ..|...|.+++|+|
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~-~~h~~~v~~~~~s~  223 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q---IRYTF-KAHESNVNHLSISP  223 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E---EEEEE-ECCSSCEEEEEECT
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-c---eeEEE-cCccccceEEEECC
Confidence            54322221122578899999999987          7899999999999999432 2   34445 78999999999999


Q ss_pred             CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      ++++|++++.|+.|++||+.                 ........+. +...|.+++|+|++.+++++ .|+.|++||+.
T Consensus       224 ~g~~l~sgs~dg~v~iwd~~-----------------~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~  284 (343)
T 2xzm_R          224 NGKYIATGGKDKKLLIWDIL-----------------NLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLM  284 (343)
T ss_dssp             TSSEEEEEETTCEEEEEESS-----------------CCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESS
T ss_pred             CCCEEEEEcCCCeEEEEECC-----------------CCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeC
Confidence            99999999999999999972                 2222233332 34569999999999887755 58889999987


Q ss_pred             CCCcee-eeee-----------eecCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982          235 GPSPLA-QNVA-----------FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       235 ~~~~~~-~~~~-----------~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~  276 (379)
                      +..... ..+.           +|...+.+++|+|+|++|+ ++.|+.+++|+..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          285 TQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             SCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred             CCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence            754321 1222           5677899999999998887 6678899999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.8e-38  Score=271.49  Aligned_cols=279  Identities=9%  Similarity=0.010  Sum_probs=229.0

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-eEEEEEeccCCCceEEEEEcCCCC-EEEEEeCCCeEEEEec-
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-WEKLHVLQKHDQIVSGIDWSVRSN-RIVTVSHDRNSYVWNQ-   83 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~-   83 (379)
                      ..|.+.|++++|+|++++|++++.||.|++|++.+++ ......+..|...|.+++|+|+++ +|++++.|+.|++||+ 
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            5789999999999999999999999999999998763 223455568999999999999999 9999999999999999 


Q ss_pred             cCCceeeeEEeec--CCCceeEEEECCCCCEEEEEeCCCeEEEEEeec---------CCceeEEEEEeecCCcCEEEEEE
Q 016982           84 EGSEWVPTLVILR--LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ---------ENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        84 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                      .+++.   ..+..  |...|.+++|+| ++.+++++.|+.|++||++.         ..   ....+  .|...+.+++|
T Consensus        88 ~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~--~~~~~v~~~~~  158 (342)
T 1yfq_A           88 GSPSF---QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL---NSNNT--KVKNKIFTMDT  158 (342)
T ss_dssp             SSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES---CSSSS--SSCCCEEEEEE
T ss_pred             cCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC---eeeEE--eeCCceEEEEe
Confidence            88763   34466  899999999999 99999999999999999986         43   12233  48889999999


Q ss_pred             cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcc-cc--eEEEeecCCcceEEEEECC-CCCEEEEEcCCCeE
Q 016982          153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKF-GE--QILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMI  228 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i  228 (379)
                      +|++  +++++.++.|++||+.                  . ..  .......|...+.+++|+| +++++++++.||.|
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i  218 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLP------------------LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV  218 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESS------------------CCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred             cCCc--EEEEeCCCeEEEEECC------------------ccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence            9887  9999999999999972                  2 11  2233446678899999999 99999999999999


Q ss_pred             EEEECCCC-----CceeeeeeeecC---------CeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccC
Q 016982          229 YFVDDVGP-----SPLAQNVAFRDL---------PLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTS  293 (379)
Q Consensus       229 ~v~d~~~~-----~~~~~~~~~~~~---------~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      ++|++...     ......+..|..         +|.+++|+|++++|+ ++.|+.+++|+......   ..        
T Consensus       219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~--------  287 (342)
T 1yfq_A          219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK---IK--------  287 (342)
T ss_dssp             EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE---EE--------
T ss_pred             EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH---hh--------
Confidence            99999876     245567777754         899999999998777 56788999999765431   11        


Q ss_pred             CCCCccCCCcccccceeeccccccCccccccccccccccc-ccceeeeeeecccCCcccceEEEeecCce-EEEEe
Q 016982          294 SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTH-VNCINCIVPLREAGSSRITRFTTSGLDGK-IVTWD  367 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~-v~iW~  367 (379)
                                                         .+.+| ...|++++   +++    ++|++|+.||. .+.|.
T Consensus       288 -----------------------------------~~~~~h~~~v~~~~---~~~----~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          288 -----------------------------------NFAKFNEDSVVKIA---CSD----NILCLATSDDTFKTNAA  321 (342)
T ss_dssp             -----------------------------------ECCCCSSSEEEEEE---ECS----SEEEEEEECTHHHHCSS
T ss_pred             -----------------------------------hhhcccCCCceEec---CCC----CeEEEEecCCccccccc
Confidence                                               12466 89999988   555    89999999999 55555

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-39  Score=309.18  Aligned_cols=311  Identities=11%  Similarity=0.099  Sum_probs=222.0

Q ss_pred             eeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEecCCceEEEEEeccC------------------CCceEEEEEcCCC
Q 016982            6 VHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH------------------DQIVSGIDWSVRS   66 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~   66 (379)
                      +.+|.++|++++|+|+ +..|++|+.||.| +||+.++  +.+..+..|                  ...|.+++|+|+|
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg  223 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN--EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS  223 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT--EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC--ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence            4678999999999996 5789999999999 9999987  566666655                  5679999999999


Q ss_pred             CEEEEEeCCCeEEEEeccCCceeeeEEee----------------cCCCceeEEEEC----CCC-CEEEEEeCC-----C
Q 016982           67 NRIVTVSHDRNSYVWNQEGSEWVPTLVIL----------------RLNRAALCVQWS----PKE-NKFAVGSGA-----K  120 (379)
Q Consensus        67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~----------------~~~~~v~~~~~~----~~~-~~l~~~~~d-----~  120 (379)
                      ++|++++.|+.|++||+.+++.+....+.                .+...|.+++|+    |++ .++++|+.+     .
T Consensus       224 ~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~  303 (902)
T 2oaj_A          224 LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ  303 (902)
T ss_dssp             SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred             CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence            99999999999999999988754321110                134578999994    443 456666554     2


Q ss_pred             eEEEEEeecC-----------------------------Cc-----------------e---eE--------EEEEe---
Q 016982          121 TVCICYYEQE-----------------------------NN-----------------W---WV--------SKLIR---  140 (379)
Q Consensus       121 ~v~i~~~~~~-----------------------------~~-----------------~---~~--------~~~~~---  140 (379)
                      .+.+|++...                             ..                 .   .+        .+.+.   
T Consensus       304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~  383 (902)
T 2oaj_A          304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS  383 (902)
T ss_dssp             CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred             eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence            5666663200                             00                 0   00        00000   


Q ss_pred             --------------ecCCcCEE----------------------------------EEEEcCCCcEEEEeeCCCeEEEEe
Q 016982          141 --------------KRHDSSVT----------------------------------SVAWHPNNVFLATTSTDGKCRVFS  172 (379)
Q Consensus       141 --------------~~~~~~v~----------------------------------~~~~~p~~~~l~~~~~d~~i~v~d  172 (379)
                                    ..|...|+                                  .++|+|++++|++|+.|++|++||
T Consensus       384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd  463 (902)
T 2oaj_A          384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD  463 (902)
T ss_dssp             CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred             CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE
Confidence                          01112333                                  345578899999999999999999


Q ss_pred             ccccccccccccCCCccCCcccceE-EEe-----ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---------
Q 016982          173 TFIKGVDIKEKKEGTSSDTKFGEQI-LQL-----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS---------  237 (379)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~---------  237 (379)
                      +.....             .....+ ..+     .+|...|.+++|+|+|++||+|+.||+|++||+.+++         
T Consensus       464 ~~~g~~-------------~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~  530 (902)
T 2oaj_A          464 ASHGDI-------------QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE  530 (902)
T ss_dssp             SSCCTT-------------TTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred             CCCccc-------------cCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence            732210             000001 111     2788899999999999999999999999999987652         


Q ss_pred             -----------------------------------ceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcE
Q 016982          238 -----------------------------------PLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIW  281 (379)
Q Consensus       238 -----------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~  281 (379)
                                                         +++..+.+|..+|++++|+||| +|| ++.|+.+++|+.......
T Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~  609 (902)
T 2oaj_A          531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAII  609 (902)
T ss_dssp             -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEE
T ss_pred             CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEE
Confidence                                               1246677899999999999999 888 556788999996543211


Q ss_pred             EEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccc-ccccceeeeeeec-----ccCCcccceEE
Q 016982          282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGG-THVNCINCIVPLR-----EAGSSRITRFT  355 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~-----~~~~~~~~~l~  355 (379)
                      .. ..+                                        ..+. +|.+.|++|+ |+     +|+ +++++|+
T Consensus       610 ~~-~~~----------------------------------------~~~~~gh~~~V~sv~-Fs~~~~~~Dg-~~~~~l~  646 (902)
T 2oaj_A          610 YM-ENI----------------------------------------REISGAQSACVTCIE-FVIMEYGDDG-YSSILMV  646 (902)
T ss_dssp             EE-EEG----------------------------------------GGTCSSCCCCEEEEE-EEEEECTTSS-SEEEEEE
T ss_pred             EE-eeh----------------------------------------hHhccccccceEEEE-EEEEecCCCC-CcceEEE
Confidence            00 000                                        0223 8999999999 88     776 6679999


Q ss_pred             EeecCceEEEEeC---CCcccccc
Q 016982          356 TSGLDGKIVTWDL---ESQEDLLN  376 (379)
Q Consensus       356 t~~~Dg~v~iW~~---~~~~~~~~  376 (379)
                      +|+.||+|++||+   .+|+.+..
T Consensus       647 sgs~D~tv~~wd~~p~~~g~~~~~  670 (902)
T 2oaj_A          647 CGTDMGEVITYKILPASGGKFDVQ  670 (902)
T ss_dssp             EEETTSEEEEEEEEECGGGCEEEE
T ss_pred             EEecCCcEEEEEEecCCCCcEEEE
Confidence            9999999999999   66665543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=300.41  Aligned_cols=244  Identities=11%  Similarity=0.096  Sum_probs=194.9

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ..++|.+.|++++|+|++++||+|+.||.|+||+..+.  +....+ .|..+|.+++|+| +++|++++.|++|++||+.
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~--~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV--EVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC--EEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc--EEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            35789999999999999999999999999999998775  444444 4788999999999 8899999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE--------EEEeecCCcCEEEEEEcCC-
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS--------KLIRKRHDSSVTSVAWHPN-  155 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~--------~~~~~~~~~~v~~~~~~p~-  155 (379)
                      +++....+   .+...|++++|+|+++++++|+.||.|++||++........        ..+ .+|.+.|.+++|+|+ 
T Consensus        88 ~~~~~~~~---~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~-~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           88 SQKVLTTV---FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFP-AARLSPIVSIQWNPRD  163 (902)
T ss_dssp             TCSEEEEE---ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCS-SSCCCCCCEEEEETTE
T ss_pred             CCcEEEEE---cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccc-ccCCCCeEEEEEccCC
Confidence            98866555   36789999999999999999999999999999876521000        112 568899999999996 


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC------------------CcceEEEEECCCCC
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS------------------FSWAFGVKWSPSGN  217 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~sp~~~  217 (379)
                      +..|++++.|+.| +||+                  +.++++..+..|                  ...|.+++|+|+|+
T Consensus       164 ~~~l~~g~~dg~v-lWd~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          164 IGTVLISYEYVTL-TYSL------------------VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             EEEEEEECSSCEE-EEET------------------TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred             CCEEEEEeCCCcE-EEEC------------------CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence            4789999999999 9997                  445555555443                  46799999999999


Q ss_pred             EEEEEcCCCeEEEEECCCCCceee-eee---e-------------ecCCeeeEEEec----CC-cEEEEE-eCC-----C
Q 016982          218 TLAYVGHNSMIYFVDDVGPSPLAQ-NVA---F-------------RDLPLRDVLFVS----EK-MVIGVG-FDC-----N  269 (379)
Q Consensus       218 ~l~~~~~d~~i~v~d~~~~~~~~~-~~~---~-------------~~~~i~~~~~s~----~~-~~l~~~-~d~-----~  269 (379)
                      +|++++.|+.|++||+++++.+.. .+.   .             +..+|++++|++    ++ .+|+++ .+.     .
T Consensus       225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~  304 (902)
T 2oaj_A          225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS  304 (902)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred             EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence            999999999999999988764321 121   1             244799999964    43 566655 432     6


Q ss_pred             eEEEEe
Q 016982          270 PMVFAA  275 (379)
Q Consensus       270 ~~i~~~  275 (379)
                      +.+|..
T Consensus       305 v~~~~~  310 (902)
T 2oaj_A          305 LTMIDL  310 (902)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            777763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.2e-37  Score=273.28  Aligned_cols=284  Identities=16%  Similarity=0.219  Sum_probs=238.2

Q ss_pred             ceeccCcce-eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            5 AVHQFAQCI-TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         5 ~~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .+.+|.+.| +++.  +++++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+  +++|++++.|+.|++||+
T Consensus       113 ~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~  186 (445)
T 2ovr_B          113 VLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA  186 (445)
T ss_dssp             EEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence            467888765 5544  56899999999999999999987  6888999999999999998  569999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .+++....+  ..|...|.++.|+  ++.+++++.|+.|++||+.+++   ....+ ..|...+.+++|  +++++++++
T Consensus       187 ~~~~~~~~~--~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~---~~~~~-~~~~~~v~~~~~--~~~~l~~~~  256 (445)
T 2ovr_B          187 ETGECIHTL--YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ---CLHVL-MGHVAAVRCVQY--DGRRVVSGA  256 (445)
T ss_dssp             TTTEEEEEE--CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC---EEEEE-ECCSSCEEEEEE--CSSCEEEEE
T ss_pred             CcCcEEEEE--CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc---EEEEE-cCCcccEEEEEE--CCCEEEEEc
Confidence            999865554  6789999999996  6789999999999999999877   45555 789999999999  788999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      .|+.|++||+                  .+++++..+..|...|.+++|  ++.++++++.|+.|++||+.+++ .+..+
T Consensus       257 ~dg~i~iwd~------------------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~  315 (445)
T 2ovr_B          257 YDFMVKVWDP------------------ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTL  315 (445)
T ss_dssp             TTSCEEEEEG------------------GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEE
T ss_pred             CCCEEEEEEC------------------CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEE
Confidence            9999999997                  667888899999999999999  78999999999999999998876 45777


Q ss_pred             eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccc
Q 016982          244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDA  322 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (379)
                      ..|...+.++.++  +.+++ ++.|+.+++|+...........                                     
T Consensus       316 ~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------------------------------  356 (445)
T 2ovr_B          316 TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ-------------------------------------  356 (445)
T ss_dssp             CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-------------------------------------
T ss_pred             cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc-------------------------------------
Confidence            8888888888774  45555 6779999999986543222110                                     


Q ss_pred             cccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          323 VESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       323 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                            ....|...|++++ ++  +    ++|++|+.||.|++||+.+++.++.+
T Consensus       357 ------~~~~~~~~v~~~~-~~--~----~~l~s~~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          357 ------GPNKHQSAVTCLQ-FN--K----NFVITSSDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             ------STTSCSSCEEEEE-EC--S----SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ------cCCCCCCCEEEEE-EC--C----CEEEEEeCCCeEEEEECCCCceeeee
Confidence                  1134888999999 43  2    79999999999999999998877654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.4e-39  Score=272.52  Aligned_cols=257  Identities=19%  Similarity=0.221  Sum_probs=201.1

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEE
Q 016982           48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCIC  125 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~  125 (379)
                      ..+.+|.+.|++++|+|+|++|++++.|++|++||+.+++......+.+|...|.+++|+|  ++++|++++.|+.|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3457899999999999999999999999999999999876444445578999999999986  48999999999999999


Q ss_pred             EeecCCceeEEEEEeecCCcCEEEEEEcCC--CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          126 YYEQENNWWVSKLIRKRHDSSVTSVAWHPN--NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      |++++... ....+ .+|...|.+++|+|+  +.+|++++.|+.|++||+...               ........+..|
T Consensus        87 d~~~~~~~-~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~---------------~~~~~~~~~~~h  149 (316)
T 3bg1_A           87 REENGTWE-KSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE---------------GQWEVKKINNAH  149 (316)
T ss_dssp             CCSSSCCC-EEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS---------------SCEEECCBTTSS
T ss_pred             ECCCCcce-EEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC---------------CCcceeeeeccc
Confidence            99876411 23344 689999999999998  789999999999999997210               001123445678


Q ss_pred             CcceEEEEECCC-----------------CCEEEEEcCCCeEEEEECCCCC--ceeeeeeeecCCeeeEEEecCC----c
Q 016982          204 FSWAFGVKWSPS-----------------GNTLAYVGHNSMIYFVDDVGPS--PLAQNVAFRDLPLRDVLFVSEK----M  260 (379)
Q Consensus       204 ~~~v~~~~~sp~-----------------~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~i~~~~~s~~~----~  260 (379)
                      ...+.+++|+|+                 +++|++++.|+.|++||+....  .....+.+|...|.+++|+|++    .
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence            888999999997                 4789999999999999987543  2456778899999999999986    6


Q ss_pred             EEE-EEeCCCeEEEEecCCC--cEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccce
Q 016982          261 VIG-VGFDCNPMVFAADETG--IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCI  337 (379)
Q Consensus       261 ~l~-~~~d~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  337 (379)
                      +|+ ++.|+.+++|+.....  .+..                        .                    .+.+|.+.|
T Consensus       230 ~las~s~D~~v~iw~~~~~~~~~~~~------------------------~--------------------~~~~~~~~v  265 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDDASSNTWSP------------------------K--------------------LLHKFNDVV  265 (316)
T ss_dssp             EEEEEETTCEEEEEECSSTTCCCCBC------------------------C--------------------EEEECSSCE
T ss_pred             eEEEEcCCCeEEEEEccCccccchhh------------------------h--------------------hhhcCCCcE
Confidence            666 7789999999875421  1100                        0                    124688899


Q ss_pred             eeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          338 NCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       338 ~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                      .+++ |++++    ++||+|+.||.|++|+...
T Consensus       266 ~~v~-~sp~g----~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          266 WHVS-WSITA----NILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEE-ECTTT----CCEEEEESSSCEEEEEECT
T ss_pred             EEEE-EcCCC----CEEEEEcCCCeEEEEEECC
Confidence            9999 77666    8999999999999999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.3e-38  Score=312.00  Aligned_cols=335  Identities=13%  Similarity=0.181  Sum_probs=243.1

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC--CCEEEEEeCCCeEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~   82 (379)
                      .+.+|.+.|++++|+|++++||+++.||.|++||+.++  +.+..+.+|...|.+++|+|+  +.++++++.|+.|++||
T Consensus       652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd  729 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD  729 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEE
Confidence            45689999999999999999999999999999999987  688889999999999999994  56899999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeE---------------------------
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWV---------------------------  135 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~---------------------------  135 (379)
                      +.+++....+  .+|...|.+++|+|+++++++++.||.|++||+........                           
T Consensus       730 ~~~~~~~~~~--~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  807 (1249)
T 3sfz_A          730 LNQKECRNTM--FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS  807 (1249)
T ss_dssp             TTSSSEEEEE--CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred             CCCcchhhee--cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence            9999865554  67999999999999999999999999999999876532100                           


Q ss_pred             ------------------------EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCC
Q 016982          136 ------------------------SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDT  191 (379)
Q Consensus       136 ------------------------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~  191 (379)
                                              ...+..+|...+.+++|+|+++++++++.++.|++||+                  
T Consensus       808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~------------------  869 (1249)
T 3sfz_A          808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI------------------  869 (1249)
T ss_dssp             TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET------------------
T ss_pred             CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc------------------
Confidence                                    11111367788999999999999999999999999997                  


Q ss_pred             cccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce----------------------------e---
Q 016982          192 KFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL----------------------------A---  240 (379)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~----------------------------~---  240 (379)
                      .++..+..+.+|...|.+++|+|+|++|++++.|+.|++||+.+....                            .   
T Consensus       870 ~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  949 (1249)
T 3sfz_A          870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI  949 (1249)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEE
T ss_pred             CCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEE
Confidence            667788888999999999999999999999999999999986431000                            0   


Q ss_pred             -----eeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEe-cCCCcEEEEEEecc---cccCCCCCccCCCccccccee
Q 016982          241 -----QNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA-DETGIWTFIKFLDE---RKTSSSGPKYGSQFSEAFGKL  310 (379)
Q Consensus       241 -----~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  310 (379)
                           .....+...+.+++|+|++++++ ++.++.+.+|+. ..............   ......+.............+
T Consensus       950 ~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~v 1029 (1249)
T 3sfz_A          950 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1029 (1249)
T ss_dssp             EESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEE
T ss_pred             ecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence                 00011234577888888888777 556777888773 11111111100000   000000000000000000011


Q ss_pred             eccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          311 YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                      + ..        .........+|...|.+++ +++++     .+++++.||.|++||+.+++.++.
T Consensus      1030 w-d~--------~~~~~~~~~~~~~~v~~~~-~~~~~-----~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A         1030 W-NW--------QTGDYVFLQAHQETVKDFR-LLQDS-----RLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp             E-ET--------TTTEEECCBCCSSCEEEEE-ECSSS-----EEEEEESSSEEEEEETTTTCCCEE
T ss_pred             E-EC--------CCCceEEEecCCCcEEEEE-EcCCC-----cEEEEECCCcEEEEECCCCceeEE
Confidence            0 00        0011113457999999999 66554     789999999999999998876654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.6e-38  Score=288.22  Aligned_cols=296  Identities=14%  Similarity=0.110  Sum_probs=242.1

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCC--ceEEEEEeccCCCc-eEEEEEcC--CCCEEEEEeCCCeEEEE
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE--KWEKLHVLQKHDQI-VSGIDWSV--RSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~vw   81 (379)
                      ..|.+.|++++|+|++++|++++ ++.|++|++.++  ..+....+.+|... |.+++|+|  ++++|++++.|+.|++|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            45789999999999999999998 789999999864  11366778999999 99999999  99999999999999999


Q ss_pred             eccCC------ceeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982           82 NQEGS------EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        82 ~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  151 (379)
                      |+.++      +......+..|...|.+++|+|++++|++++.+    +.|++||  .+.   ....+ ..|...|.+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~---~~~~~-~~~~~~v~~~~  167 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN---SLGEV-SGHSQRINACH  167 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC---EEEEC-CSCSSCEEEEE
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC---cceee-ecCCccEEEEE
Confidence            99765      333444456789999999999999999999987    6788877  333   34555 78999999999


Q ss_pred             EcCCCc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc---ceEEEEECCC-CCEEEEEcCCC
Q 016982          152 WHPNNV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS---WAFGVKWSPS-GNTLAYVGHNS  226 (379)
Q Consensus       152 ~~p~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~l~~~~~d~  226 (379)
                      |+|+++ ++++++.|+.|++||+                  ..++.+..+..|..   .|.+++|+|+ +++|++++.|+
T Consensus       168 ~~~~~~~~l~~~~~d~~v~vwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  229 (615)
T 1pgu_A          168 LKQSRPMRSMTVGDDGSVVFYQG------------------PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR  229 (615)
T ss_dssp             ECSSSSCEEEEEETTTEEEEEET------------------TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred             ECCCCCcEEEEEeCCCcEEEEeC------------------CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence            999997 8999999999999996                  66788888988988   9999999999 99999999999


Q ss_pred             eEEEEECCCCCceeeee-e---eecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982          227 MIYFVDDVGPSPLAQNV-A---FRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS  301 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~-~---~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
                      .|++||+.+++. +..+ .   .|..+|.+++|+ ++++|+ ++.|+.+++|+...........   ..           
T Consensus       230 ~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~-----------  293 (615)
T 1pgu_A          230 KISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT---LD-----------  293 (615)
T ss_dssp             CEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE---CC-----------
T ss_pred             eEEEEECCCCCE-eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc---CC-----------
Confidence            999999988764 4566 5   789999999999 888877 5668899999987543211111   00           


Q ss_pred             CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                                                  ...+...+.++. ++ ++    .+|++++.||.|++||+.+++.+..+
T Consensus       294 ----------------------------~~~~~~~~~~~~-~~-~~----~~l~~~~~~g~i~~~d~~~~~~~~~~  335 (615)
T 1pgu_A          294 ----------------------------KQQLGNQQVGVV-AT-GN----GRIISLSLDGTLNFYELGHDEVLKTI  335 (615)
T ss_dssp             ----------------------------TTCGGGCEEEEE-EE-ET----TEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred             ----------------------------CCcccCceeEEE-eC-CC----CeEEEEECCCCEEEEECCCCcEEEEE
Confidence                                        012445677777 54 43    79999999999999999887665443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.1e-37  Score=294.67  Aligned_cols=248  Identities=13%  Similarity=0.177  Sum_probs=219.2

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+..|..+|++++|+|++++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~  127 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE  127 (814)
T ss_dssp             EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred             EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence            45679999999999999999999999999999999987  6778889999999999999999999999999999999998


Q ss_pred             CC-ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC--CCcEEE
Q 016982           85 GS-EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP--NNVFLA  160 (379)
Q Consensus        85 ~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~  160 (379)
                      ++ ....  ....|...|.+++|+| +++.+++++.||.|++||+.....   ...+...+...+.+++|+|  ++++|+
T Consensus       128 ~~~~~~~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (814)
T 3mkq_A          128 NNWALEQ--TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMI  202 (814)
T ss_dssp             GTSEEEE--EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred             CCceEEE--EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---eeEEecCCCCCEEEEEEEECCCCCEEE
Confidence            87 4333  3367889999999999 889999999999999999987663   3333245558899999999  899999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      +++.||.|++||+                  ..++++..+..|...|.+++|+|++++|++++.||.|++||+.++. ..
T Consensus       203 ~~~~dg~i~~~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~  263 (814)
T 3mkq_A          203 TASDDLTIKIWDY------------------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK-VE  263 (814)
T ss_dssp             EECTTSEEEEEET------------------TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS-EE
T ss_pred             EEeCCCEEEEEEC------------------CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EE
Confidence            9999999999997                  6677888899999999999999999999999999999999998876 45


Q ss_pred             eeeeeecCCeeeEEEecCCc--EEEEEeCCCeEEEEecCC
Q 016982          241 QNVAFRDLPLRDVLFVSEKM--VIGVGFDCNPMVFAADET  278 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~--~l~~~~d~~~~i~~~~~~  278 (379)
                      ..+..+...+.+++|+|++.  +++++.++.+.+|.....
T Consensus       264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          264 KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (814)
T ss_dssp             EEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred             EEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence            77777888999999999987  688899999999987543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-37  Score=286.13  Aligned_cols=242  Identities=15%  Similarity=0.184  Sum_probs=196.9

Q ss_pred             cceeccCcc-eeEEEeCC--CCcEEEEEecCCeEEEEEecCC------ceEEEEEeccCCCceEEEEEcCCCCEEEEEeC
Q 016982            4 IAVHQFAQC-ITCHAWSP--DHAMVAFCPNNNEVHIYKLIQE------KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH   74 (379)
Q Consensus         4 ~~~~~~~~~-i~~~~~s~--~~~~l~~~~~dg~i~i~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   74 (379)
                      ..+.+|... |++++|+|  ++++||+|+.||.|++||+.++      .......+..|..+|.+++|+|++++|++++.
T Consensus        57 ~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  136 (615)
T 1pgu_A           57 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE  136 (615)
T ss_dssp             EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             eEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence            346789999 99999999  9999999999999999999755      45778888999999999999999999999998


Q ss_pred             C----CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc---C
Q 016982           75 D----RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS---S  146 (379)
Q Consensus        75 d----~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~---~  146 (379)
                      +    +.|.+||  .++...  .+..|...|.+++|+|+++ .+++++.|+.|++||+...+   ....+ ..|..   .
T Consensus       137 ~~~~~~~v~~~d--~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~---~~~~~-~~~~~~~~~  208 (615)
T 1pgu_A          137 GRDNFGVFISWD--SGNSLG--EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK---FSASD-RTHHKQGSF  208 (615)
T ss_dssp             CSSCSEEEEETT--TCCEEE--ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE---EEEEE-CSSSCTTCC
T ss_pred             CCCCccEEEEEE--CCCcce--eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc---eeeee-cccCCCCce
Confidence            7    6888888  444333  3467999999999999998 89999999999999987766   45555 77888   9


Q ss_pred             EEEEEEcCC-CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-e---cCCcceEEEEECCCCCEEEE
Q 016982          147 VTSVAWHPN-NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-D---LSFSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       147 v~~~~~~p~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~l~~  221 (379)
                      |.+++|+|+ +++|++++.|+.|++||+                  .+++.+..+ .   .|...|.+++|+ ++++|++
T Consensus       209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~------------------~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~  269 (615)
T 1pgu_A          209 VRDVEFSPDSGEFVITVGSDRKISCFDG------------------KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT  269 (615)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEET------------------TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEEC------------------CCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence            999999999 999999999999999997                  667788888 5   889999999999 9999999


Q ss_pred             EcCCCeEEEEECCCCCceeeeeeee----cCCeeeEEEecCCcEEE-EEeCCCeEEEE
Q 016982          222 VGHNSMIYFVDDVGPSPLAQNVAFR----DLPLRDVLFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       222 ~~~d~~i~v~d~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      ++.|+.|++||+.+++. ...+..+    ...+.++.|+ ++.+++ ++.++.+++|+
T Consensus       270 ~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d  325 (615)
T 1pgu_A          270 VGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYE  325 (615)
T ss_dssp             EETTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred             EcCCCcEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEE
Confidence            99999999999987543 2333333    2334445554 333322 44455555554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6.9e-37  Score=272.65  Aligned_cols=281  Identities=15%  Similarity=0.093  Sum_probs=233.4

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEc--CCCCEEEEEeCCCeEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS--VRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~vw~   82 (379)
                      .+.+|.+.|++++|+|++ +|++|+.||.|++||+.++  +.+..+.+|...|.+++|+  +++++|++++.|+.|++||
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC--cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            456799999999999988 8999999999999999987  7888999999999999998  5778999999999999999


Q ss_pred             ccCCceee---------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEee
Q 016982           83 QEGSEWVP---------------------TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRK  141 (379)
Q Consensus        83 ~~~~~~~~---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  141 (379)
                      +.++....                     .....+|...+.++  +++++++++++.|+.|++||+.+..   ....+ .
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~-~  307 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK---CLYIL-S  307 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE---EEEEE-C
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc---EEEEe-c
Confidence            98775322                     22335677777776  5678999999999999999998876   45555 7


Q ss_pred             cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEE
Q 016982          142 RHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       142 ~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~  221 (379)
                      +|...|.+++|+|+++++++++.|+.|++||+                  .+++++..+.+|...|.+++|+  +.+|++
T Consensus       308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~------------------~~~~~~~~~~~h~~~v~~~~~~--~~~l~s  367 (464)
T 3v7d_B          308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDL------------------ENGELMYTLQGHTALVGLLRLS--DKFLVS  367 (464)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEET------------------TTTEEEEEECCCSSCEEEEEEC--SSEEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------------------CCCcEEEEEeCCCCcEEEEEEc--CCEEEE
Confidence            89999999999999999999999999999997                  6788899999999999999998  579999


Q ss_pred             EcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982          222 VGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS  301 (379)
Q Consensus       222 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
                      ++.||.|++||+.+.... ... .+...+..++|++++++++++.|+.+++|+.........                  
T Consensus       368 ~s~dg~v~vwd~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~------------------  427 (464)
T 3v7d_B          368 AAADGSIRGWDANDYSRK-FSY-HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA------------------  427 (464)
T ss_dssp             EETTSEEEEEETTTCCEE-EEE-ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEES------------------
T ss_pred             EeCCCcEEEEECCCCcee-eee-cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEeh------------------
Confidence            999999999999887643 222 356678889999999999988899999999876542110                  


Q ss_pred             CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                                 ...+|...|.+++ |+. .    .++++++.||.+.+|-
T Consensus       428 ---------------------------~~~~~~~~v~~v~-~~~-~----~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          428 ---------------------------NILKDADQIWSVN-FKG-K----TLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             ---------------------------CTTTTCSEEEEEE-EET-T----EEEEEEEETTEEEEEE
T ss_pred             ---------------------------hhccCCCcEEEEE-ecC-C----EEEEEEEeCCeEEEEE
Confidence                                       1246888999999 542 2    5777777888766553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.4e-38  Score=272.99  Aligned_cols=290  Identities=12%  Similarity=0.117  Sum_probs=229.4

Q ss_pred             ceeEEEeCCCCcEE-EEEecCCeEEEEEecCCce--EEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccCCc
Q 016982           12 CITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKW--EKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus        12 ~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      ....++++|+...+ ++++.||.|++|++.....  .....+.+|...|++++|+| ++++|++++.|+.|++||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            34457888876544 4578899999999865411  23445778999999999999 89999999999999999999873


Q ss_pred             e-----eeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEE
Q 016982           88 W-----VPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        88 ~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~  160 (379)
                      .     .....+..|...|.+++|+|++ ++|++++.|+.|++||++++.   ....+. ..|...|.+++|+|++++|+
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~  192 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA---AVLTLGPDVHPDTIYSVDWSRDGALIC  192 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE---EEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC---ccEEEecCCCCCceEEEEECCCCCEEE
Confidence            2     2333446799999999999998 699999999999999998876   333332 46899999999999999999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcc-eEEEEECCCCCEEEEE---cCCCeEEEEECCC
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSW-AFGVKWSPSGNTLAYV---GHNSMIYFVDDVG  235 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~sp~~~~l~~~---~~d~~i~v~d~~~  235 (379)
                      +++.|+.|++||+                  +.++.+..+ ..|.+. +..+.|+|++++|+++   +.|+.|++||+++
T Consensus       193 ~~~~d~~i~iwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~  254 (402)
T 2aq5_A          193 TSCRDKRVRVIEP------------------RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKH  254 (402)
T ss_dssp             EEETTSEEEEEET------------------TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTB
T ss_pred             EEecCCcEEEEeC------------------CCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcc
Confidence            9999999999997                  567777777 677665 8999999999999999   7999999999988


Q ss_pred             CCceeeeee-eecCCeeeEEEecCCcEEE-EE-eCCCeEEEEecCCCc-EEEEEEecccccCCCCCccCCCcccccceee
Q 016982          236 PSPLAQNVA-FRDLPLRDVLFVSEKMVIG-VG-FDCNPMVFAADETGI-WTFIKFLDERKTSSSGPKYGSQFSEAFGKLY  311 (379)
Q Consensus       236 ~~~~~~~~~-~~~~~i~~~~~s~~~~~l~-~~-~d~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (379)
                      ......... .+...+.+++|+|++++|+ ++ .|+.+++|+...... ......                         
T Consensus       255 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~-------------------------  309 (402)
T 2aq5_A          255 LEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-------------------------  309 (402)
T ss_dssp             CSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE-------------------------
T ss_pred             ccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc-------------------------
Confidence            765333333 4667899999999999886 55 589999999876542 222110                         


Q ss_pred             ccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982          312 GQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED  373 (379)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~  373 (379)
                                         ..|...|++++ |++++    .++++  .|+.+++|++.+++.
T Consensus       310 -------------------~~~~~~v~~~~-~sp~~----~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          310 -------------------FSSKESQRGMG-YMPKR----GLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             -------------------ECCSSCCSEEE-ECCGG----GSCGG--GTEEEEEEEEETTEE
T ss_pred             -------------------cccCCcccceE-Eeccc----cccee--cceeEEEEEcCCCcE
Confidence                               12568899999 76655    67654  577999999987543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-37  Score=266.33  Aligned_cols=263  Identities=17%  Similarity=0.196  Sum_probs=212.4

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTV  122 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v  122 (379)
                      +.+..+.+|...|++++|+|++++|++++.|+.|++||+..........+..|...|.+++|+|+  +++|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            35667889999999999999999999999999999999986554455555789999999999987  9999999999999


Q ss_pred             EEEEeecCCceeEEEEEeecCCcCEEEEEEcCC--CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe
Q 016982          123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN--NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL  200 (379)
Q Consensus       123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (379)
                      ++||++.+... ....+ ..|...|.+++|+|+  +++|++++.|+.|++||+..                ........+
T Consensus        82 ~iwd~~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------------~~~~~~~~~  143 (379)
T 3jrp_A           82 LIWKEENGRWS-QIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE----------------NGTTSPIII  143 (379)
T ss_dssp             EEEEEETTEEE-EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT----------------TSCCCEEEE
T ss_pred             EEEEcCCCcee-Eeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC----------------CCceeeEEe
Confidence            99999987521 23333 678999999999999  89999999999999999721                112334556


Q ss_pred             ecCCcceEEEEECC-------------CCCEEEEEcCCCeEEEEECCCCCc---eeeeeeeecCCeeeEEEecC---CcE
Q 016982          201 DLSFSWAFGVKWSP-------------SGNTLAYVGHNSMIYFVDDVGPSP---LAQNVAFRDLPLRDVLFVSE---KMV  261 (379)
Q Consensus       201 ~~~~~~v~~~~~sp-------------~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~i~~~~~s~~---~~~  261 (379)
                      ..|...|.+++|+|             ++.+|++++.|+.|++||++....   +...+..|..+|.+++|+|+   +.+
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  223 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY  223 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence            78899999999999             699999999999999999987653   33566778999999999999   788


Q ss_pred             EE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeee
Q 016982          262 IG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCI  340 (379)
Q Consensus       262 l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  340 (379)
                      |+ ++.|+.+++|+.............                                         ....|...|+++
T Consensus       224 l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------------------~~~~~~~~v~~~  262 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQGPWKKTLL-----------------------------------------KEEKFPDVLWRA  262 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEES-----------------------------------------SSSCCSSCEEEE
T ss_pred             EEEEeCCCEEEEEeCCCCCccceeeee-----------------------------------------ccccCCCcEEEE
Confidence            77 667899999998764311111100                                         113588899999


Q ss_pred             eeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          341 VPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       341 ~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                      + |++++    ++|++++.||.|++|++..+
T Consensus       263 ~-~s~~g----~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          263 S-WSLSG----NVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             E-ECSSS----CCEEEEESSSSEEEEEEEET
T ss_pred             E-EcCCC----CEEEEecCCCcEEEEeCCCC
Confidence            9 77666    89999999999999999853

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=266.53  Aligned_cols=288  Identities=13%  Similarity=0.113  Sum_probs=224.7

Q ss_pred             ceeccCcceeEEEeCCC---CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982            5 AVHQFAQCITCHAWSPD---HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      .+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+........+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            45689999999999999   699999999999999999974335557888999999999999999999999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEE--CCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQW--SPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL  159 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  159 (379)
                      |+.+++...   ...|...|.+++|  +|++++|++++.|+.|++||+++...   ...+ ..+ ..+.++.+.+  ..+
T Consensus       114 d~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~-~~~-~~~~~~~~~~--~~~  183 (368)
T 3mmy_A          114 DLSSNQAIQ---IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP---MMVL-QLP-ERCYCADVIY--PMA  183 (368)
T ss_dssp             ETTTTEEEE---EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC---SEEE-ECS-SCEEEEEEET--TEE
T ss_pred             EcCCCCcee---eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE---EEEE-ecC-CCceEEEecC--Cee
Confidence            999987544   3568999999999  89999999999999999999988773   4444 333 4667777654  578


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCE----EEEEcCCCeEEEEECC
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNT----LAYVGHNSMIYFVDDV  234 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~----l~~~~~d~~i~v~d~~  234 (379)
                      ++++.++.+++|++.                 ........+ ..+...+..+.+.++...    +++++.|+.|++||+.
T Consensus       184 ~~~~~~~~i~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  246 (368)
T 3mmy_A          184 VVATAERGLIVYQLE-----------------NQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN  246 (368)
T ss_dssp             EEEEGGGCEEEEECS-----------------SSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred             EEEeCCCcEEEEEec-----------------cccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence            888899999999972                 112222222 122344555655554444    9999999999999998


Q ss_pred             CCC--ceeeeeeeecC------------CeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCcc
Q 016982          235 GPS--PLAQNVAFRDL------------PLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKY  299 (379)
Q Consensus       235 ~~~--~~~~~~~~~~~------------~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (379)
                      ...  .....+..|..            +|.+++|+|++++|+ ++.|+.+++|+.....   ...              
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---~~~--------------  309 (368)
T 3mmy_A          247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART---KLK--------------  309 (368)
T ss_dssp             CSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---EEE--------------
T ss_pred             CCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc---EEE--------------
Confidence            763  23355555554            799999999998777 6679999999977542   111              


Q ss_pred             CCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          300 GSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                                   .+.+|...|++++ |++++    ++|++|+.|+..+.|++.+
T Consensus       310 -----------------------------~~~~~~~~v~~~~-~s~~g----~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          310 -----------------------------TSEQLDQPISACC-FNHNG----NIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             -----------------------------ECCCCSSCEEEEE-ECTTS----SCEEEEECCCSTTCGGGCC
T ss_pred             -----------------------------EecCCCCCceEEE-ECCCC----CeEEEEecccccccccccC
Confidence                                         2257899999999 77666    8999999998766666543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-36  Score=268.10  Aligned_cols=253  Identities=10%  Similarity=0.062  Sum_probs=203.7

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-eEEEEEec-------------------------------------
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-WEKLHVLQ-------------------------------------   51 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~-------------------------------------   51 (379)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++ .+.+..+.                                     
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4689999999999976665 57899999998874 11333333                                     


Q ss_pred             -----------------cCCCceEEEEEcCCCCEE-EEEeCCCeEEEEecc--CCceeeeEEeecCCCceeEEEECCCCC
Q 016982           52 -----------------KHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQE--GSEWVPTLVILRLNRAALCVQWSPKEN  111 (379)
Q Consensus        52 -----------------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (379)
                                       +|...|.+++|+|++++| ++++.|+.|++||+.  +++....+....+...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                             234479999999999996 889999999999999  777666665446788999999999999


Q ss_pred             EEEEEeCCCeEEEEEeecCCcee-EEEEEeecCCcCEEEEEEcCC---CcEEEEeeCCCeEEEEeccccccccccccCCC
Q 016982          112 KFAVGSGAKTVCICYYEQENNWW-VSKLIRKRHDSSVTSVAWHPN---NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGT  187 (379)
Q Consensus       112 ~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  187 (379)
                      +|++++.++.+++|++....... ....+ .+|...|.+++|+|+   +++|++++.|+.|++||+              
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~--------------  227 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY--------------  227 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE--------------
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC--------------
Confidence            99999999999999987765321 11234 679999999999999   999999999999999997              


Q ss_pred             ccCCcccceEEE-eecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee---------------------
Q 016982          188 SSDTKFGEQILQ-LDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF---------------------  245 (379)
Q Consensus       188 ~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------------------  245 (379)
                          ..++++.. +.+|...|.+++|+ ++++|++++.|+.|++||+.+++. +..+..                     
T Consensus       228 ----~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          228 ----PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             ----SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC-------
T ss_pred             ----CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhccccccccccc
Confidence                55666666 56899999999999 999999999999999999998763 344432                     


Q ss_pred             ----ecCCeeeEEEecCCcEEEEE--eCCCeEEEEe--cCCCcEEEE
Q 016982          246 ----RDLPLRDVLFVSEKMVIGVG--FDCNPMVFAA--DETGIWTFI  284 (379)
Q Consensus       246 ----~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~--~~~~~~~~~  284 (379)
                          ....+.+++|+|++++|+++  .++.+++|+.  ...+.+...
T Consensus       302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~  348 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALK  348 (450)
T ss_dssp             ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEE
T ss_pred             ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeec
Confidence                23568899999999988854  5889999998  444444443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8e-36  Score=264.28  Aligned_cols=282  Identities=16%  Similarity=0.184  Sum_probs=237.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|+  +++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+  ++.|++++.|+.|++||+.
T Consensus       154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~  227 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE  227 (445)
T ss_dssp             ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred             EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC--cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence            456799999999997  579999999999999999987  7888999999999999996  5689999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      +++....+  ..|...+.+++|  +++.+++++.|+.|++||+++..   ....+ ..|...|.+++|  +++++++++.
T Consensus       228 ~~~~~~~~--~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~---~~~~~-~~~~~~v~~~~~--~~~~l~~~~~  297 (445)
T 2ovr_B          228 TGQCLHVL--MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET---CLHTL-QGHTNRVYSLQF--DGIHVVSGSL  297 (445)
T ss_dssp             SCCEEEEE--ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE---EEEEE-CCCSSCEEEEEE--CSSEEEEEET
T ss_pred             CCcEEEEE--cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc---EeEEe-cCCCCceEEEEE--CCCEEEEEeC
Confidence            98865554  678999999999  68899999999999999998876   45555 789999999999  7899999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      |+.|++||+                  .+++++..+..|...+.++.++  +++|++++.||.|++||+.+++. +..+.
T Consensus       298 d~~i~i~d~------------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~-~~~~~  356 (445)
T 2ovr_B          298 DTSIRVWDV------------------ETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC-LQTLQ  356 (445)
T ss_dssp             TSCEEEEET------------------TTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-EEEEC
T ss_pred             CCeEEEEEC------------------CCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcE-EEEEc
Confidence            999999997                  6788888999999999888874  67999999999999999988764 46666


Q ss_pred             e---ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982          245 F---RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN  320 (379)
Q Consensus       245 ~---~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
                      .   |..+|.+++|+  +.+|+ ++.|+.+++|+.............                                 
T Consensus       357 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---------------------------------  401 (445)
T 2ovr_B          357 GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTL---------------------------------  401 (445)
T ss_dssp             STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEEC---------------------------------
T ss_pred             cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecc---------------------------------
Confidence            4   77889999996  45555 677999999998765433222111                                 


Q ss_pred             cccccccccccccccceeeeeeecccCCcccceEEEeecCce----EEEEeCCCc
Q 016982          321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK----IVTWDLESQ  371 (379)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~----v~iW~~~~~  371 (379)
                              ...+|.+.|++++ |++++    .+|++|+.||.    |.+||+...
T Consensus       402 --------~~~~~~~~v~~~~-~s~~~----~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          402 --------ESGGSGGVVWRIR-ASNTK----LVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             --------TTGGGTCEEEEEE-ECSSE----EEEEEECSSSSSCCEEEEEECCCC
T ss_pred             --------ccCCCCceEEEEE-ecCCE----EEEEEcccCCCCccEEEEEECCCC
Confidence                    1136888999999 76655    89999999997    999999763

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-38  Score=279.19  Aligned_cols=304  Identities=13%  Similarity=0.088  Sum_probs=224.1

Q ss_pred             EeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe-ccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccC---Cceee-
Q 016982           17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL-QKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEG---SEWVP-   90 (379)
Q Consensus        17 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~---~~~~~-   90 (379)
                      .|+|+++.+++++      .|+...   +.+..+ .+|.+.|++++|+| ++++|++++.|++|++||+.+   +.... 
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g---~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  104 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRG---KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS  104 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCC---CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred             hcCCccccccccc------cccccc---eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence            4678888887765      377544   577777 89999999999999 999999999999999999976   43222 


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEee---cCCcee-----EEEEEe-ec--CCcCEEEEE--EcCCCc
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYE---QENNWW-----VSKLIR-KR--HDSSVTSVA--WHPNNV  157 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~---~~~~~~-----~~~~~~-~~--~~~~v~~~~--~~p~~~  157 (379)
                      ... ..|...|.+++|+|++++|++++.|+.|++||++   .+....     ....+. ..  +...+.++.  ++|+++
T Consensus       105 ~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (437)
T 3gre_A          105 SLT-YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS  183 (437)
T ss_dssp             SEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred             eee-ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence            222 3589999999999999999999999999999995   333110     011110 11  566777777  568899


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec--CCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL--SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      +|++++.|+.|++||+                  +.++++..+..  |...|++++|+|++++|++++.||.|++||+++
T Consensus       184 ~l~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          184 LLVALTNLSRVIIFDI------------------RTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF  245 (437)
T ss_dssp             EEEEEETTSEEEEEET------------------TTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             EEEEEeCCCeEEEEeC------------------CCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence            9999999999999997                  67788888887  789999999999999999999999999999998


Q ss_pred             CCceeeeee-eecCCeeeEEEec----CCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccce
Q 016982          236 PSPLAQNVA-FRDLPLRDVLFVS----EKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGK  309 (379)
Q Consensus       236 ~~~~~~~~~-~~~~~i~~~~~s~----~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (379)
                      +. .+..+. .|..+|.+++|+|    ++.+|+ ++.|+.+++|+...........   .......    ...+.+.-..
T Consensus       246 ~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~  317 (437)
T 3gre_A          246 NV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI---NSDEQPS----MEHFLPIEKG  317 (437)
T ss_dssp             TE-EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE---SSSSCCC----GGGGSCBCSS
T ss_pred             cc-EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE---cCCCCCc----cceecccccc
Confidence            65 445554 5677899996654    677777 5567889999987654322221   1110000    0000000000


Q ss_pred             eeccccccCcccccccccccccc--cccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          310 LYGQSKYGVGNDAVESSRTRGGT--HVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      +               ....+.+  |...|++++ ++ ++    ++|+||+.||.|++||+.+++.++.+
T Consensus       318 l---------------~~~~~~~~~~~~~v~~l~-~~-~~----~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          318 L---------------EELNFCGIRSLNALSTIS-VS-ND----KILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             G---------------GGCCCCCCCSGGGGCCEE-EE-TT----EEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             c---------------ccceecccccCCceEEEE-EC-Cc----eEEEecCCCCeEEEEECCCcccceEE
Confidence            0               0012344  999999999 65 44    79999999999999999998876543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-37  Score=291.29  Aligned_cols=265  Identities=17%  Similarity=0.267  Sum_probs=222.2

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC--CCEEEEEeCCCeEEEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR--SNRIVTVSHDRNSYVW   81 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw   81 (379)
                      ..+.+|.++|++++|+|++++|++|+.||.|++|++.++.......+.+|..+|.+++|+|+  +++|++++.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            35689999999999999999999999999999999986666888899999999999999988  8999999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-----
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-----  154 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-----  154 (379)
                      |+.+++.........|...|.+++|+|+  ++.+++++.||.|++||++...... ...+ ..|...|.+++|+|     
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~-~~~~-~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-PIII-DAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC-CEEE-ECCSSCEEEEEECCCC---
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc-eeEe-ecCCCceEEEEecCccccc
Confidence            9999875555666789999999999999  9999999999999999998874321 2233 68999999999999     


Q ss_pred             --------CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC---CCEEEEEc
Q 016982          155 --------NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS---GNTLAYVG  223 (379)
Q Consensus       155 --------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~  223 (379)
                              +++++++++.||.|++||+...              .........+..|...|.+++|+|+   +++|++++
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~--------------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSD--------------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETT--------------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCC--------------cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence                    5899999999999999997210              0122566778899999999999999   89999999


Q ss_pred             CCCeEEEEECCCCCc----eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEE
Q 016982          224 HNSMIYFVDDVGPSP----LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFI  284 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~  284 (379)
                      .||.|++||+.++..    .......|...|++++|+|+|++++ ++.|+.+++|+.+..+.|...
T Consensus       227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~~~  292 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA  292 (753)
T ss_dssp             SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCBCC
T ss_pred             cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcccc
Confidence            999999999987632    1223345778899999999998877 678999999998876655543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-38  Score=274.43  Aligned_cols=264  Identities=11%  Similarity=0.069  Sum_probs=210.1

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      +.....|.+++|+|||+++|+++.|++|+  |....     ..+.+|...|.+++|+|+|       .++.+.+|+.+..
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~   77 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN   77 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc-----ceecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence            34568999999999999999999999999  65443     3457999999999999999       4666666654433


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-----CEEEEEEcCCCcEEEE
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-----SVTSVAWHPNNVFLAT  161 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~l~~  161 (379)
                      .   .+. ..+...|.+++|+|+|+.||+++.||.|++||.+.     +...+ . |..     .+.+++|+|||++|++
T Consensus        78 ~---~~~-~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAs  146 (588)
T 2j04_A           78 G---LLN-SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVV  146 (588)
T ss_dssp             C---SST-TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred             e---Eee-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEE
Confidence            2   222 24578899999999999999999999999999433     34444 4 554     5999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccc-------eEEEe----ecCCcceEEEEECCCCCEEEEEcCCCeEEE
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE-------QILQL----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYF  230 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v  230 (379)
                      |+.||+|++||+.                  .+.       .+.++    .+|..+|.+++|+|+|  +++++.|+.|++
T Consensus       147 gs~DGtVkIWd~~------------------~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrl  206 (588)
T 2j04_A          147 GNEDGELQFFSIR------------------KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFS  206 (588)
T ss_dssp             EETTSEEEEEECC------------------CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEE
T ss_pred             EcCCCEEEEEECC------------------CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEE
Confidence            9999999999972                  232       35665    5677899999999999  778889999999


Q ss_pred             EECCCCCc--eeeee-eeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccccc
Q 016982          231 VDDVGPSP--LAQNV-AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAF  307 (379)
Q Consensus       231 ~d~~~~~~--~~~~~-~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (379)
                      ||+.++..  ..+++ .+|...|.+++|+  |+.|+++.++.+++|+..+...-..                        
T Consensus       207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~------------------------  260 (588)
T 2j04_A          207 MTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSL------------------------  260 (588)
T ss_dssp             ECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEE------------------------
T ss_pred             EECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEE------------------------
Confidence            99988763  22455 3678899999999  6888877789999999776431111                        


Q ss_pred             ceeeccccccCcccccccccccccccccceeeeeee--cccCCcccceEEEeecCceEEEEeCC
Q 016982          308 GKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPL--REAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                            ..+|.+.|..++ +  ++++    ..|++++.||+ ++|.++
T Consensus       261 ----------------------~~gh~~~V~~va-~~~s~d~----~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          261 ----------------------KTGSLENFHIIP-LNHEKES----TILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             ----------------------ECSCCSCCCEEE-ETTCSSC----EEEEECSSCEE-EEEESS
T ss_pred             ----------------------EcCCCceEEEEE-eeeCCCC----CEEEEEcCCCC-EEEeec
Confidence                                  137999999999 6  6555    89999999999 999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.9e-36  Score=255.66  Aligned_cols=268  Identities=18%  Similarity=0.204  Sum_probs=211.7

Q ss_pred             EEEEEecCCceEEEEEeccCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeccCCce---eeeEEeecCCCceeEEEECCC
Q 016982           34 VHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR-SNRIVTVSHDRNSYVWNQEGSEW---VPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        34 i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      ++++...+.+.....+|++|.+.|++++|+|+ +++|+||+.|++|++||+.+.+.   .+...+.+|...|.+++|+|+
T Consensus        18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d   97 (340)
T 4aow_A           18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD   97 (340)
T ss_dssp             --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC
Confidence            55555556656777889999999999999998 58999999999999999987542   233345678999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCcc
Q 016982          110 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS  189 (379)
Q Consensus       110 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  189 (379)
                      +++|++++.|+.|++|+.....   ..... ..+...+..+.+++++++|++++.|+.+++||+.               
T Consensus        98 g~~l~s~~~d~~i~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~---------------  158 (340)
T 4aow_A           98 GQFALSGSWDGTLRLWDLTTGT---TTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL---------------  158 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTTE---EEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT---------------
T ss_pred             CCEEEEEcccccceEEeecccc---eeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeC---------------
Confidence            9999999999999999988776   23333 6778889999999999999999999999999972               


Q ss_pred             CCcccceEEEeecCCcceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEe
Q 016982          190 DTKFGEQILQLDLSFSWAFGVKWSPSG--NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGF  266 (379)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~  266 (379)
                        ...........|...+..++|++++  .++++++.|+.|++||+.+.+ ....+.+|..+|++++|+|++++|+ ++.
T Consensus       159 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  235 (340)
T 4aow_A          159 --GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSPDGSLCASGGK  235 (340)
T ss_dssp             --SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             --CCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence              2334445567788899999999864  578899999999999998876 4577888999999999999999888 668


Q ss_pred             CCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeeccc
Q 016982          267 DCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREA  346 (379)
Q Consensus       267 d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  346 (379)
                      |+.+++|+.........                          +                     .+...|.+++ ++++
T Consensus       236 Dg~i~iwd~~~~~~~~~--------------------------~---------------------~~~~~v~~~~-~~~~  267 (340)
T 4aow_A          236 DGQAMLWDLNEGKHLYT--------------------------L---------------------DGGDIINALC-FSPN  267 (340)
T ss_dssp             TCEEEEEETTTTEEEEE--------------------------E---------------------ECSSCEEEEE-ECSS
T ss_pred             CCeEEEEEeccCceeee--------------------------e---------------------cCCceEEeee-cCCC
Confidence            89999998765432111                          1                     2445788888 6665


Q ss_pred             CCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          347 GSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       347 ~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                      +     ++++++.|+.|++||++++..+..
T Consensus       268 ~-----~~~~~~~d~~i~iwd~~~~~~~~~  292 (340)
T 4aow_A          268 R-----YWLCAATGPSIKIWDLEGKIIVDE  292 (340)
T ss_dssp             S-----SEEEEEETTEEEEEETTTTEEEEE
T ss_pred             C-----ceeeccCCCEEEEEECCCCeEEEe
Confidence            4     677888899999999988765543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.7e-36  Score=264.23  Aligned_cols=308  Identities=15%  Similarity=0.191  Sum_probs=232.9

Q ss_pred             CcceeEEEeCCCC----------cEEEEEec----CCeEEEEEec--------------------------CCceEEEEE
Q 016982           10 AQCITCHAWSPDH----------AMVAFCPN----NNEVHIYKLI--------------------------QEKWEKLHV   49 (379)
Q Consensus        10 ~~~i~~~~~s~~~----------~~l~~~~~----dg~i~i~~~~--------------------------~~~~~~~~~   49 (379)
                      .-+..++.|.|+.          .++++|+.    ...|.++++.                          +++.+ ...
T Consensus        45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~  123 (430)
T 2xyi_A           45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIE-IEI  123 (430)
T ss_dssp             SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEE-EEE
T ss_pred             CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceE-EEE
Confidence            4577899999965          46788765    3578888653                          01111 344


Q ss_pred             eccCCCceEEEEEcCC-CCEEEEEeCCCeEEEEeccC--------CceeeeEEeecCCCceeEEEECCCCC-EEEEEeCC
Q 016982           50 LQKHDQIVSGIDWSVR-SNRIVTVSHDRNSYVWNQEG--------SEWVPTLVILRLNRAALCVQWSPKEN-KFAVGSGA  119 (379)
Q Consensus        50 ~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d  119 (379)
                      ...|.+.|++++|+|+ +++|++++.||.|++|++..        +.......+..|...+.+++|+|++. +|++++.|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  203 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD  203 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence            5668999999999997 67899999999999999986        22334455578999999999999988 99999999


Q ss_pred             CeEEEEEeecCCc--e--eEEEEEeecCCcCEEEEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc
Q 016982          120 KTVCICYYEQENN--W--WVSKLIRKRHDSSVTSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG  194 (379)
Q Consensus       120 ~~v~i~~~~~~~~--~--~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  194 (379)
                      |.|++|++.....  .  .....+ ..|...|.+++|+| ++.+|++++.|+.|++||+...               ...
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~---------------~~~  267 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN---------------NTS  267 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS---------------CSS
T ss_pred             CeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC---------------CCC
Confidence            9999999987331  1  112333 68999999999999 6789999999999999997210               112


Q ss_pred             ceEEEeecCCcceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEE-EEeCCCeE
Q 016982          195 EQILQLDLSFSWAFGVKWSPSGN-TLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPM  271 (379)
Q Consensus       195 ~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~  271 (379)
                      ..+..+..|...|++++|+|++. +|++++.||.|++||++.....+..+..|...|.+++|+|+++ +|+ ++.|+.++
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~  347 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLH  347 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCE
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEE
Confidence            56667778899999999999887 6889999999999999986666688888999999999999985 455 67899999


Q ss_pred             EEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCccc
Q 016982          272 VFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRI  351 (379)
Q Consensus       272 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  351 (379)
                      +|+....+....   .......                             .......+.+|...|++++ |++++    
T Consensus       348 iwd~~~~~~~~~---~~~~~~~-----------------------------~~~~~~~~~~h~~~v~~~~-~~p~~----  390 (430)
T 2xyi_A          348 VWDLSKIGEEQS---TEDAEDG-----------------------------PPELLFIHGGHTAKISDFS-WNPNE----  390 (430)
T ss_dssp             EEEGGGTTCCCC---HHHHHHC-----------------------------CTTEEEECCCCSSCEEEEE-ECSSS----
T ss_pred             EEeCCCCccccC---ccccccC-----------------------------CcceEEEcCCCCCCceEEE-ECCCC----
Confidence            999875331100   0000000                             0001113468999999999 66655    


Q ss_pred             c-eEEEeecCceEEEEeCCCc
Q 016982          352 T-RFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       352 ~-~l~t~~~Dg~v~iW~~~~~  371 (379)
                      + +|++++.||.|++|++.+.
T Consensus       391 ~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          391 PWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTEEEEEETTSEEEEEEECHH
T ss_pred             CCEEEEEECCCCEEEeEcccc
Confidence            6 9999999999999999753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-36  Score=265.70  Aligned_cols=250  Identities=19%  Similarity=0.232  Sum_probs=211.8

Q ss_pred             cceeccCcceeEEEeCCC----C---cEEEEEecCCeEEEEEecCCce---EEEEEeccC-----CCceEEEEEc----C
Q 016982            4 IAVHQFAQCITCHAWSPD----H---AMVAFCPNNNEVHIYKLIQEKW---EKLHVLQKH-----DQIVSGIDWS----V   64 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~----~---~~l~~~~~dg~i~i~~~~~~~~---~~~~~~~~~-----~~~v~~~~~~----~   64 (379)
                      ..+.+|..+|++++|+|+    +   ++|++++.||.|++|++.+++.   .....+..|     ...|.+++|+    |
T Consensus        56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  135 (397)
T 1sq9_A           56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR  135 (397)
T ss_dssp             EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred             eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence            346789999999999999    9   9999999999999999987631   116777788     5899999999    9


Q ss_pred             CCCE-EEEEeCCCeEEEEeccC------Cceee-----eEEe-----ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           65 RSNR-IVTVSHDRNSYVWNQEG------SEWVP-----TLVI-----LRLNRAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        65 ~~~~-l~~~~~d~~i~vw~~~~------~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                      ++++ |++++.|+.|++||+.+      ++...     .+..     ..|...+.+++|+|++ ++++++.|+.|++||+
T Consensus       136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~  214 (397)
T 1sq9_A          136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL  214 (397)
T ss_dssp             --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET
T ss_pred             CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEEC
Confidence            9999 99999999999999988      55433     3322     4478899999999999 9999999999999999


Q ss_pred             ecCCceeEEEEEeec---C---CcCEEEEEEcCCCcEEEEeeCC---CeEEEEeccccccccccccCCCccCCcccceEE
Q 016982          128 EQENNWWVSKLIRKR---H---DSSVTSVAWHPNNVFLATTSTD---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL  198 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
                      +...   ....+ ..   |   ...+.+++|+|++++|++++.|   +.|++||+                  ..++.+.
T Consensus       215 ~~~~---~~~~~-~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~------------------~~~~~~~  272 (397)
T 1sq9_A          215 STLR---PLYNF-ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET------------------EFGERIG  272 (397)
T ss_dssp             TTTE---EEEEE-ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET------------------TTCCEEE
T ss_pred             CCCc---eeEEE-eccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC------------------CCCcccc
Confidence            8876   34555 56   8   8999999999999999999999   99999997                  5677788


Q ss_pred             Eeec-------------CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee------ee-------------
Q 016982          199 QLDL-------------SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA------FR-------------  246 (379)
Q Consensus       199 ~~~~-------------~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~------~~-------------  246 (379)
                      .+..             |...|.+++|+|++++|++++.|+.|++||+.+.+ .+..+.      .|             
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~  351 (397)
T 1sq9_A          273 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-RITTLNMHCDDIEIEEDILAVDEHGDS  351 (397)
T ss_dssp             EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc-eeEEEecccCcccchhhhhcccccccc
Confidence            8887             89999999999999999999999999999998876 446676      66             


Q ss_pred             --cCCeeeEEEecCC----------cEEE-EEeCCCeEEEEecC
Q 016982          247 --DLPLRDVLFVSEK----------MVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       247 --~~~i~~~~~s~~~----------~~l~-~~~d~~~~i~~~~~  277 (379)
                        ..+|.+++|+|++          ++|+ ++.|+.+++|+...
T Consensus       352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence              8899999999998          5666 67799999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.5e-36  Score=259.10  Aligned_cols=250  Identities=13%  Similarity=0.151  Sum_probs=210.9

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|+|++++|++++.||.|++||+.+++......+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~  126 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE  126 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence            45679999999999999999999999999999999988555566667899999999999999999999999999999998


Q ss_pred             CCcee--eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEee------------------cCCceeEEEEEeecCC
Q 016982           85 GSEWV--PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYE------------------QENNWWVSKLIRKRHD  144 (379)
Q Consensus        85 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~------------------~~~~~~~~~~~~~~~~  144 (379)
                      .++..  .......|...|.+++|+|++++|++++.|+.|++||++                  ...   ....+ ..|.
T Consensus       127 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~  202 (372)
T 1k8k_C          127 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE---LMFES-SSSC  202 (372)
T ss_dssp             TTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC---EEEEC-CCCS
T ss_pred             CCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh---heEec-CCCC
Confidence            87631  122224578999999999999999999999999999965                  222   34445 6889


Q ss_pred             cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC
Q 016982          145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH  224 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  224 (379)
                      ..+.+++|+|++++|++++.|+.|++||+                  ..++++..+..|...|.+++|+|++.+|+++ .
T Consensus       203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  263 (372)
T 1k8k_C          203 GWVHGVCFSANGSRVAWVSHDSTVCLADA------------------DKKMAVATLASETLPLLAVTFITESSLVAAG-H  263 (372)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEG------------------GGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T
T ss_pred             CeEEEEEECCCCCEEEEEeCCCEEEEEEC------------------CCCceeEEEccCCCCeEEEEEecCCCEEEEE-e
Confidence            99999999999999999999999999997                  6778889999999999999999999988887 8


Q ss_pred             CCeEEEEECCC--CC-------------------------------ce-------eeeeeeecCCeeeEEEe-cCC---c
Q 016982          225 NSMIYFVDDVG--PS-------------------------------PL-------AQNVAFRDLPLRDVLFV-SEK---M  260 (379)
Q Consensus       225 d~~i~v~d~~~--~~-------------------------------~~-------~~~~~~~~~~i~~~~~s-~~~---~  260 (379)
                      |+.|++|++..  +.                               ..       .....+|..+|++++|. ++|   .
T Consensus       264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~  343 (372)
T 1k8k_C          264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS  343 (372)
T ss_dssp             TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred             CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence            99999999877  21                               00       11224788999999977 565   7


Q ss_pred             EEE-EEeCCCeEEEEecC
Q 016982          261 VIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       261 ~l~-~~~d~~~~i~~~~~  277 (379)
                      +|+ ++.|+.+++|+...
T Consensus       344 ~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          344 QFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             EEEEEETTSEEEEEEHHH
T ss_pred             eEEEecCCCceEEEEecC
Confidence            776 67799999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.5e-36  Score=280.05  Aligned_cols=245  Identities=17%  Similarity=0.170  Sum_probs=204.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|+|++++|++|+.||.|++||+.++  .....+.+|...|.+++|+|++++|++++.|++|++||..
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            46789999999999999999999999999999999987  7788899999999999999999999999999999999987


Q ss_pred             CCceeeeE-EeecCCCceeEEEECCCC--CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           85 GSEWVPTL-VILRLNRAALCVQWSPKE--NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        85 ~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ........ ....|...|.+++|+|++  ..+++++.|+.|++||++...   ....+ .+|...|.+++|+|++++|++
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~---~~~~~-~~h~~~v~~v~~spdg~~l~s  578 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK---LRSTL-AGHTGYVSTVAVSPDGSLCAS  578 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC---EEEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc---EEEEE-cCCCCCEEEEEEeCCCCEEEE
Confidence            65321111 113577889999999986  589999999999999998876   45556 789999999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      ++.|+.|++||+                  .+++++..+.. ...+.+++|+|++.+|++++ ++.|++||+.+... +.
T Consensus       579 g~~Dg~i~iwd~------------------~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~-~~  637 (694)
T 3dm0_A          579 GGKDGVVLLWDL------------------AEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSI-VE  637 (694)
T ss_dssp             EETTSBCEEEET------------------TTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred             EeCCCeEEEEEC------------------CCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCC-hh
Confidence            999999999997                  56677766654 46799999999999887765 56799999987653 23


Q ss_pred             eeeee-------------------cCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982          242 NVAFR-------------------DLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       242 ~~~~~-------------------~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~  276 (379)
                      .+..+                   ...+++++|+|+|++|+ ++.|+.|++|+..
T Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             hhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            33211                   11368899999999888 6678999999854

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.3e-36  Score=260.26  Aligned_cols=245  Identities=12%  Similarity=0.080  Sum_probs=196.0

Q ss_pred             eccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982            7 HQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         7 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      .+|...|++++|+| ++++|++++.|+.|++||+.+...........|...|.+++|+|++++|++++.|+.|++||+. 
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-  193 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-  193 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-
Confidence            46999999999999 7899999999999999999975333333334455889999999999999999999999999994 


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCce-eEEEEEeecCCcCEEEEEEcC-CCcEEEEe
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNW-WVSKLIRKRHDSSVTSVAWHP-NNVFLATT  162 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~  162 (379)
                      ++...  .+..|...|.+++|+|+++ ++++++.|+.|++||++..... .....+  .|...|.+++|+| ++++|+++
T Consensus       194 ~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          194 GHEIF--KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             SCEEE--EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEE
T ss_pred             CCEEE--EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEE
Confidence            44333  3467999999999999998 9999999999999999874311 133333  6999999999999 99999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-----------------CcceEEEEECCCCCEEEEEcCC
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-----------------FSWAFGVKWSPSGNTLAYVGHN  225 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~~~sp~~~~l~~~~~d  225 (379)
                      +.|+.|++||+..                  ++....+..|                 ...+..++|+|++++  +++.|
T Consensus       270 ~~d~~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d  329 (383)
T 3ei3_B          270 DQRNEIRVYSSYD------------------WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK  329 (383)
T ss_dssp             ESSSEEEEEETTB------------------TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred             cCCCcEEEEECCC------------------CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence            9999999999732                  2222222211                 234556778888877  77899


Q ss_pred             CeEEEEECCCCCceeeeeee--ecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          226 SMIYFVDDVGPSPLAQNVAF--RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       226 ~~i~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                      +.|++||+.+++. +..+..  +...+..++|+|++++|+++.|+.+++|+.++
T Consensus       330 ~~i~iwd~~~~~~-~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~  382 (383)
T 3ei3_B          330 RTIDIYDANSGGL-VHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED  382 (383)
T ss_dssp             CCEEEEETTTCCE-EEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred             CeEEEEecCCCce-eeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence            9999999988764 466665  45667778999999999988899999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.8e-37  Score=263.72  Aligned_cols=259  Identities=14%  Similarity=0.146  Sum_probs=209.8

Q ss_pred             cCcceeEEEeCCC----CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEec
Q 016982            9 FAQCITCHAWSPD----HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         9 ~~~~i~~~~~s~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~   83 (379)
                      |...|++++|+|+    +++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+| ++++|++++.|+.|++||+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            5688999999998    679999999999999999887  67888899999999999999 8999999999999999999


Q ss_pred             cCCceeeeEEe-ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee-------------------------EEE
Q 016982           84 EGSEWVPTLVI-LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW-------------------------VSK  137 (379)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-------------------------~~~  137 (379)
                      .+++....+.. ..|...|.+++|+|++++|++++.|+.|++||++......                         ...
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (366)
T 3k26_A          146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS  225 (366)
T ss_dssp             TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred             ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence            99875444311 4688999999999999999999999999999998653100                         001


Q ss_pred             EEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCC--
Q 016982          138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS--  215 (379)
Q Consensus       138 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--  215 (379)
                      .. ..|...|.+++|+  +++|++++.|+.|++||+...........    ........+..+..|...|.+++|+|+  
T Consensus       226 ~~-~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  298 (366)
T 3k26_A          226 TR-DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIK----PSESNVTILGRFDYSQCDIWYMRFSMDFW  298 (366)
T ss_dssp             EC-SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCC----TTCCCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred             cc-cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccc----cCCcchheeccccccCCcEEEEEEcCCCC
Confidence            11 3489999999998  77999999999999999743221111110    011223557788889999999999999  


Q ss_pred             CCEEEEEcCCCeEEEEECCCCCc---eeeeeeee--cCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPSP---LAQNVAFR--DLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~--~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~  276 (379)
                      +++|++++.||.|++||+.++..   ....+..|  ...|.+++|+|++++|+ ++.|+.+++|+..
T Consensus       299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999999999999999988653   23356666  68999999999999888 6678899999853

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.6e-36  Score=264.30  Aligned_cols=255  Identities=16%  Similarity=0.217  Sum_probs=212.9

Q ss_pred             ceeccCcceeEEEeCCC-CcEEEEEecCCeEEEEEecC--------CceEEEEEeccCCCceEEEEEcCCCC-EEEEEeC
Q 016982            5 AVHQFAQCITCHAWSPD-HAMVAFCPNNNEVHIYKLIQ--------EKWEKLHVLQKHDQIVSGIDWSVRSN-RIVTVSH   74 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~   74 (379)
                      ....|.+.|++++|+|+ +.+||+++.+|.|++|++..        +.......+.+|...|.+++|+|++. +|++++.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            45778999999999997 68999999999999999986        22366778889999999999999998 9999999


Q ss_pred             CCeEEEEeccCCce-----eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           75 DRNSYVWNQEGSEW-----VPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        75 d~~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      ||.|++|++..+..     ........|...|.+++|+| ++.+|++++.|+.|++||++..........+ ..|...|.
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~v~  281 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV-DAHTAEVN  281 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-ECCSSCEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-ecCCCCeE
Confidence            99999999987421     11233457889999999999 7789999999999999999876321134444 68999999


Q ss_pred             EEEEcCCCc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC-EEEEEcCCC
Q 016982          149 SVAWHPNNV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN-TLAYVGHNS  226 (379)
Q Consensus       149 ~~~~~p~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~  226 (379)
                      +++|+|++. +|++++.||.|++||+.                 ....++..+..|...|.+++|+|+++ +|++++.|+
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~-----------------~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLR-----------------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR  344 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETT-----------------CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCC-----------------CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence            999999986 78999999999999972                 33566788888999999999999985 688999999


Q ss_pred             eEEEEECCCCC-------------ceeeeeeeecCCeeeEEEecCCc-EEE-EEeCCCeEEEEecC
Q 016982          227 MIYFVDDVGPS-------------PLAQNVAFRDLPLRDVLFVSEKM-VIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       227 ~i~v~d~~~~~-------------~~~~~~~~~~~~i~~~~~s~~~~-~l~-~~~d~~~~i~~~~~  277 (379)
                      .|++||+....             .++....+|...|.+++|+|++. +|+ ++.|+.+++|..+.
T Consensus       345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            99999987622             35566677888999999999998 666 67788999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.4e-37  Score=269.83  Aligned_cols=253  Identities=15%  Similarity=0.104  Sum_probs=194.1

Q ss_pred             ceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            5 AVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .+.+|.+.|++++|+| ++++|++|+.||+|++||++++..........+...+.+++|+|++++|++|+.||.|++||+
T Consensus       159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~  238 (435)
T 4e54_B          159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM  238 (435)
T ss_dssp             CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred             EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence            4568999999999998 789999999999999999988633333333344556889999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      .+.. +  ..+..|...|.+++|+|++. ++++++.|+.|++||++........... .+|...|.+++|+|++++|+++
T Consensus       239 ~~~~-~--~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~s~  314 (435)
T 4e54_B          239 DGKE-L--WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS-LPHRHPVNAACFSPDGARLLTT  314 (435)
T ss_dssp             SSCB-C--CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC-CBCSSCEEECCBCTTSSEEEEE
T ss_pred             Ccce-e--EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe-eeccccccceeECCCCCeeEEE
Confidence            7654 2  23467899999999999876 7888999999999999876532112222 5789999999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc------ceEEEEECCCCCEEEEEc------------C
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS------WAFGVKWSPSGNTLAYVG------------H  224 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~sp~~~~l~~~~------------~  224 (379)
                      +.|+.|++||+                  ..+.+...+..|..      .+....|+|++.++++++            .
T Consensus       315 ~~D~~i~iwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  376 (435)
T 4e54_B          315 DQKSEIRVYSA------------------SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYE  376 (435)
T ss_dssp             ESSSCEEEEES------------------SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTC
T ss_pred             cCCCEEEEEEC------------------CCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecC
Confidence            99999999997                  33444444433321      123445666666555543            3


Q ss_pred             CCeEEEEECCCCCceeeeeeeecCCeeeE-EEecCCcEEEEEeCCCeEEEEecCCC
Q 016982          225 NSMIYFVDDVGPSPLAQNVAFRDLPLRDV-LFVSEKMVIGVGFDCNPMVFAADETG  279 (379)
Q Consensus       225 d~~i~v~d~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~d~~~~i~~~~~~~  279 (379)
                      ++.|++||..+++.+......|...|.++ +|+|+|++|+++.|+.|++|+..+.+
T Consensus       377 ~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk  432 (435)
T 4e54_B          377 LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEAR  432 (435)
T ss_dssp             CCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC---
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCe
Confidence            45799999988875534445677888887 69999999999999999999876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.6e-36  Score=260.25  Aligned_cols=253  Identities=15%  Similarity=0.164  Sum_probs=208.4

Q ss_pred             ceeccCcceeEEEeCC-CCcEEEEEecCCeEEEEEecCCce-----EEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCe
Q 016982            5 AVHQFAQCITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKW-----EKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRN   77 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~   77 (379)
                      .+.+|.+.|++++|+| ++++|++|+.||.|++|++.++..     +.+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            4668999999999999 999999999999999999987632     4567788999999999999998 69999999999


Q ss_pred             EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcC-EEEEEEcCCC
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSS-VTSVAWHPNN  156 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~  156 (379)
                      |++||+.+++....+....|...|.+++|+|++++|++++.|+.|++||++.+.   ....+...|.+. +.++.|+|++
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  232 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT---VVAEKDRPHEGTRPVHAVFVSEG  232 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---EEEEEECSSCSSSCCEEEECSTT
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc---eeeeeccCCCCCcceEEEEcCCC
Confidence            999999998755444225688999999999999999999999999999998876   333432466655 8999999999


Q ss_pred             cEEEEe---eCCCeEEEEeccccccccccccCCCccCCcccc-eEEEee-cCCcceEEEEECCCCCEEEE-EcCCCeEEE
Q 016982          157 VFLATT---STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE-QILQLD-LSFSWAFGVKWSPSGNTLAY-VGHNSMIYF  230 (379)
Q Consensus       157 ~~l~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~l~~-~~~d~~i~v  230 (379)
                      ++|+++   +.|+.|++||+.                  ..+ .+.... .+...+.+++|+|++++|++ ++.|+.|++
T Consensus       233 ~~l~~g~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i  294 (402)
T 2aq5_A          233 KILTTGFSRMSERQVALWDTK------------------HLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY  294 (402)
T ss_dssp             EEEEEEECTTCCEEEEEEETT------------------BCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred             cEEEEeccCCCCceEEEEcCc------------------cccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence            999999   789999999972                  222 122222 45677999999999999864 557999999


Q ss_pred             EECCCCCceeeeeeee--cCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982          231 VDDVGPSPLAQNVAFR--DLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG  279 (379)
Q Consensus       231 ~d~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~  279 (379)
                      ||+.++++.+..+..+  ..++.+++|+|++.++++ .++.+++|......
T Consensus       295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          295 FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHERK  344 (402)
T ss_dssp             EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEETTE
T ss_pred             EEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcCCCc
Confidence            9999877544555544  488999999999998775 56689999988643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-35  Score=256.28  Aligned_cols=242  Identities=15%  Similarity=0.214  Sum_probs=206.0

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC-c
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS-E   87 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-~   87 (379)
                      |...|++++|+|++++|++|+.||.|++||+.++  +.+..+.+|...|.+++|+  +++|++++.|+.|++||+... .
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~  208 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH  208 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc
Confidence            7889999999999999999999999999999887  6788889999999999994  679999999999999999843 3


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEee--C
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTS--T  164 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~--~  164 (379)
                      ...  ....|...|.+++|+|++++|++++.|+.|++||++...   ....+ ..|...|.+++|+|++ .++++++  .
T Consensus       209 ~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---~~~~~-~~~~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          209 QIG--TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI---PKFTK-TNHNAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             EEE--EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS---EEEEE-CCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred             eee--EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC---ccEEe-cCCcceEEEEEECCCCCCEEEEecCCC
Confidence            333  346799999999999999999999999999999998876   34455 6899999999999976 5666655  7


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE--cCCCeEEEEECCCCCc-eee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV--GHNSMIYFVDDVGPSP-LAQ  241 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~i~v~d~~~~~~-~~~  241 (379)
                      |+.|++||+                  .+++++..+. +...+.+++|+|++++++++  +.||.|++||+.++.. ...
T Consensus       283 d~~i~i~d~------------------~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~  343 (401)
T 4aez_A          283 DKQIHFWNA------------------ATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV  343 (401)
T ss_dssp             TCEEEEEET------------------TTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred             CCEEEEEEC------------------CCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence            999999997                  5677777775 46779999999999999984  4899999999987542 223


Q ss_pred             eeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      .+..|...|.+++|+|++++|+ ++.|+.+++|+.....
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            4567889999999999999888 6678899999987654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=270.71  Aligned_cols=249  Identities=8%  Similarity=0.022  Sum_probs=198.0

Q ss_pred             eeccCcceeEEEeCCC------CcEEEEEecCCeEEEEEecCCce---------EEEEEeccCCCceEEEEEcCCCCEEE
Q 016982            6 VHQFAQCITCHAWSPD------HAMVAFCPNNNEVHIYKLIQEKW---------EKLHVLQKHDQIVSGIDWSVRSNRIV   70 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~------~~~l~~~~~dg~i~i~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~   70 (379)
                      +.+|.+.|.+++|+|+      +.+||+++.||+|++||+.++..         .+...+.+|...|++++|+|++ .|+
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la  281 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV  281 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE
Confidence            4567889999999997      57999999999999999976521         1234678899999999999864 899


Q ss_pred             EEeCCCeEEEEeccCCceeeeEEeecCCCceeEE--EECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC--c
Q 016982           71 TVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCV--QWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD--S  145 (379)
Q Consensus        71 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~--~  145 (379)
                      +|+.||+|++||+.++.. +...+..|...|.++  .|+|++ .+|++++.|++|++||++....   ...+ .+|.  .
T Consensus       282 sgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~---~~~~-~~~~~~~  356 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT---TKTT-VSRFRGS  356 (524)
T ss_dssp             EEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH---HCEE-EEECSCC
T ss_pred             EEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc---cccc-ccccccC
Confidence            999999999999987642 223346799999999  578887 8999999999999999987653   2233 3443  3


Q ss_pred             CEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC
Q 016982          146 SVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN  225 (379)
Q Consensus       146 ~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d  225 (379)
                      .|.+++|+|+++.+++++.|++|++||+                  +.+.++..+.+|...|++++|+|+|++|++|+.|
T Consensus       357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~------------------~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D  418 (524)
T 2j04_B          357 NLVPVVYCPQIYSYIYSDGASSLRAVPS------------------RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD  418 (524)
T ss_dssp             SCCCEEEETTTTEEEEECSSSEEEEEET------------------TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred             cccceEeCCCcCeEEEeCCCCcEEEEEC------------------cccccceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence            5789999999999999999999999997                  5667777888999999999999999999999999


Q ss_pred             CeEEEEECCCC-----C--------------------------------------ceeeeeeeecCCeeeEEEecCCc--
Q 016982          226 SMIYFVDDVGP-----S--------------------------------------PLAQNVAFRDLPLRDVLFVSEKM--  260 (379)
Q Consensus       226 ~~i~v~d~~~~-----~--------------------------------------~~~~~~~~~~~~i~~~~~s~~~~--  260 (379)
                      ++|++||+...     +                                      .....+.+|..+|.+++|+|++.  
T Consensus       419 gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~  498 (524)
T 2j04_B          419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG  498 (524)
T ss_dssp             TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred             CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence            99999985321     0                                      01122345677899999999854  


Q ss_pred             -EEEEE-eCCCeEEEEecCC
Q 016982          261 -VIGVG-FDCNPMVFAADET  278 (379)
Q Consensus       261 -~l~~~-~d~~~~i~~~~~~  278 (379)
                       ++|+| .++.++||.+...
T Consensus       499 ~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          499 KCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             TEEEEECTTSEEEEEECSCC
T ss_pred             HHHHhhccCceEEEEEcccc
Confidence             88855 4589999987654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=258.48  Aligned_cols=245  Identities=19%  Similarity=0.235  Sum_probs=203.6

Q ss_pred             eccCcceeEEEeCCC---CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEE------EcCCCCEEEEEeCCCe
Q 016982            7 HQFAQCITCHAWSPD---HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGID------WSVRSNRIVTVSHDRN   77 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~   77 (379)
                      .+|..+|++++|+|+   +++|++|+.||.|++||+.+++ ..+..+.+|...|.+++      |+|++++|++++.|+.
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            478999999999998   6999999999999999999862 26777889999999995      5788999999999999


Q ss_pred             EEEEeccCCc-eeeeEEeecCC----CceeEEE----ECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           78 SYVWNQEGSE-WVPTLVILRLN----RAALCVQ----WSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        78 i~vw~~~~~~-~~~~~~~~~~~----~~v~~~~----~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      |++||+.+++ ....+  ..+.    ..+.+++    |+|+++++++++.|+.|++||++...   . ... ..|...|.
T Consensus       141 i~vwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~-~~~~~~v~  213 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANM--EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---L-RWE-TNIKNGVC  213 (357)
T ss_dssp             EEEECTTSCSSCSEEE--CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE---E-EEE-EECSSCEE
T ss_pred             EEEEeCCCCCCcceec--cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc---e-eee-cCCCCceE
Confidence            9999999876 33333  3333    3788888    78899999999999999999998876   2 233 57889999


Q ss_pred             EEEEcC---CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE-----EeecCCcceEEEEECCCCC-EE
Q 016982          149 SVAWHP---NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-----QLDLSFSWAFGVKWSPSGN-TL  219 (379)
Q Consensus       149 ~~~~~p---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~sp~~~-~l  219 (379)
                      +++|+|   ++++|++++.||.|++||+.                  .++.+.     .+..|...|.+++|+|+++ +|
T Consensus       214 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  275 (357)
T 3i2n_A          214 SLEFDRKDISMNKLVATSLEGKFHVFDMR------------------TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELF  275 (357)
T ss_dssp             EEEESCSSSSCCEEEEEESTTEEEEEEEE------------------EEETTTEEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred             EEEcCCCCCCCCEEEEECCCCeEEEEeCc------------------CCCcccceeeeccCCCcCCEEEEEECCCCCcEE
Confidence            999999   89999999999999999973                  222222     3448899999999999998 89


Q ss_pred             EEEcCCCeEEEEECCCCC------------------ceeeeeeeecCCeeeEEEecCCcEEE--EEeCCCeEEEEecC
Q 016982          220 AYVGHNSMIYFVDDVGPS------------------PLAQNVAFRDLPLRDVLFVSEKMVIG--VGFDCNPMVFAADE  277 (379)
Q Consensus       220 ~~~~~d~~i~v~d~~~~~------------------~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~d~~~~i~~~~~  277 (379)
                      ++++.||.|++||+....                  ..+..+..|..+|.+++|+|++++|+  ++.|+.+++|+...
T Consensus       276 ~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          276 LTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             EEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            999999999999987543                  23566778899999999999998775  56789999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-34  Score=248.95  Aligned_cols=267  Identities=12%  Similarity=0.112  Sum_probs=217.9

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEE
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVC  123 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  123 (379)
                      ......+.+|...|++++|+|++++|++++.|+.|++||+.+++....+  ..|...|.+++|+|++++|++++.|+.|+
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL--DGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh--hhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            4566778999999999999999999999999999999999998865554  67999999999999999999999999999


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-----CeEEEEeccccccccccccCCCccCCcccceEE
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL  198 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
                      +||+.++.   ....+  .+...+.+++|+|+++++++++.+     +.|++||+..........       ......+.
T Consensus       100 iwd~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-------~~~~~~~~  167 (369)
T 3zwl_B          100 LWDVSNGQ---CVATW--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT-------KVSEEPIH  167 (369)
T ss_dssp             EEETTTCC---EEEEE--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE-------EECSSCSE
T ss_pred             EEECCCCc---EEEEe--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec-------ccccceee
Confidence            99998887   44554  388899999999999999999998     999999984221110000       01123344


Q ss_pred             EeecCCc--ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEe
Q 016982          199 QLDLSFS--WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       199 ~~~~~~~--~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      .+..|..  .+.+++|+|++++|++++.||.|++||+.+.......+..|...|.+++|+|++++|+ ++.|+.+++|+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             EEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence            5555655  8999999999999999999999999999986556788888999999999999999887 567889999997


Q ss_pred             cCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEE
Q 016982          276 DETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT  355 (379)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~  355 (379)
                      .........                                               .|...+.+++ +++++    ++++
T Consensus       248 ~~~~~~~~~-----------------------------------------------~~~~~~~~~~-~~~~~----~~l~  275 (369)
T 3zwl_B          248 STLQVLKKY-----------------------------------------------ETDCPLNTAV-ITPLK----EFII  275 (369)
T ss_dssp             TTCCEEEEE-----------------------------------------------ECSSCEEEEE-ECSSS----SEEE
T ss_pred             CCCceeeee-----------------------------------------------cCCCCceeEE-ecCCC----ceEE
Confidence            764422211                                               2566788898 76665    8999


Q ss_pred             EeecCc--------------eEEEEeCCCcccccc
Q 016982          356 TSGLDG--------------KIVTWDLESQEDLLN  376 (379)
Q Consensus       356 t~~~Dg--------------~v~iW~~~~~~~~~~  376 (379)
                      +++.++              .+++||+.+++.+..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  310 (369)
T 3zwl_B          276 LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR  310 (369)
T ss_dssp             EEECCC-------------CEEEEEETTTCCEEEE
T ss_pred             EeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence            999988              899999988776654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-35  Score=246.04  Aligned_cols=253  Identities=15%  Similarity=0.161  Sum_probs=213.3

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEE
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVC  123 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  123 (379)
                      .+....+.+|.+.|++++| |++++|++++.||.|++||+.+++....+  ..|...|.+++|+|+++++++++.|+.++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV--YTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE--EECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe--ecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            4788899999999999999 99999999999999999999888755544  56899999999999999999999999999


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      +|++...........+ ..|...|.+++|  +++++++++.|+.|++||.                    .+.+..+..|
T Consensus        85 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--------------------~~~~~~~~~~  141 (313)
T 3odt_A           85 GVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--------------------GSLVYNLQAH  141 (313)
T ss_dssp             EEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--------------------TEEEEEEECC
T ss_pred             EEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--------------------CcEEEecccC
Confidence            9998766433334455 789999999999  5789999999999999974                    5667778889


Q ss_pred             CcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcE
Q 016982          204 FSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIW  281 (379)
Q Consensus       204 ~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~  281 (379)
                      ...+.+++|+| +++++++++.|+.|++||...   ....+.. |...+.+++|+|++.+++++.|+.+++|+.......
T Consensus       142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~  218 (313)
T 3odt_A          142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL  218 (313)
T ss_dssp             SSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh
Confidence            99999999998 999999999999999999332   3355555 788999999999999777889999999998754322


Q ss_pred             EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982          282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG  361 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg  361 (379)
                      .                                              .+.+|...|++++ +++++     .|++++.||
T Consensus       219 ~----------------------------------------------~~~~~~~~i~~~~-~~~~~-----~l~~~~~dg  246 (313)
T 3odt_A          219 R----------------------------------------------TYEGHESFVYCIK-LLPNG-----DIVSCGEDR  246 (313)
T ss_dssp             E----------------------------------------------EEECCSSCEEEEE-ECTTS-----CEEEEETTS
T ss_pred             h----------------------------------------------hhhcCCceEEEEE-EecCC-----CEEEEecCC
Confidence            1                                              1246889999999 76654     599999999


Q ss_pred             eEEEEeCCCccccccC
Q 016982          362 KIVTWDLESQEDLLNY  377 (379)
Q Consensus       362 ~v~iW~~~~~~~~~~~  377 (379)
                      .|++||+.+++.++.+
T Consensus       247 ~v~iwd~~~~~~~~~~  262 (313)
T 3odt_A          247 TVRIWSKENGSLKQVI  262 (313)
T ss_dssp             EEEEECTTTCCEEEEE
T ss_pred             EEEEEECCCCceeEEE
Confidence            9999999998776543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=253.82  Aligned_cols=236  Identities=11%  Similarity=0.066  Sum_probs=184.2

Q ss_pred             EeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc---------CCc
Q 016982           17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE---------GSE   87 (379)
Q Consensus        17 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~---------~~~   87 (379)
                      .+.+++++|++|+.||.|++||+.++  +.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +++
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~--~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~  115 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDS--KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK  115 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSS--SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCC--cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc
Confidence            44568889999999999999999987  3444444  457888899988   9999999999999765         344


Q ss_pred             eeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           88 WVPTLVILRLNRAALCVQWSP--KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ...... ..|...|.+++|+|  +++++++++.|+.|++||++++..   .......+...+.+++|+|++++|++|+.|
T Consensus       116 ~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~~d  191 (343)
T 3lrv_A          116 VLREIE-VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYSPD  191 (343)
T ss_dssp             EEEEEE-CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred             eeEEee-cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence            333332 35668899999999  999999999999999999998873   333324566689999999999999999999


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceE-EEeec-CCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDL-SFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      |.|++||+                  ++++.+ ..+.. |..+|.+++|+|++.+|++++ ++.|++||+++.... ..+
T Consensus       192 g~i~iwd~------------------~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-~~~  251 (343)
T 3lrv_A          192 GILDVYNL------------------SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-LAY  251 (343)
T ss_dssp             SCEEEEES------------------SCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-BSS
T ss_pred             CEEEEEEC------------------CCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-eee
Confidence            99999997                  555655 67777 999999999999999999999 559999999987643 333


Q ss_pred             e---eecCCee--eEEEecCCcEEEE-Ee-CCCeEEEEecCC-CcEEE
Q 016982          244 A---FRDLPLR--DVLFVSEKMVIGV-GF-DCNPMVFAADET-GIWTF  283 (379)
Q Consensus       244 ~---~~~~~i~--~~~~s~~~~~l~~-~~-d~~~~i~~~~~~-~~~~~  283 (379)
                      .   .|..++.  +++|+|+|++|++ +. |+.+++|+.... ..|..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred             cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence            2   2444444  5999999999986 33 889999998643 34553

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-37  Score=264.65  Aligned_cols=251  Identities=14%  Similarity=0.150  Sum_probs=194.8

Q ss_pred             ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC
Q 016982           51 QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE  130 (379)
Q Consensus        51 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~  130 (379)
                      ..+..+|++++|+|++++|++++.|+.|++||+.++.......+..|...|.+++|+|++++|++++.|+.|++||+..+
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~   87 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD   87 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence            34667999999999999999999999999999998843333444679999999999999999999999999999999886


Q ss_pred             CceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccc---eEEEeec-CCcc
Q 016982          131 NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE---QILQLDL-SFSW  206 (379)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~  206 (379)
                      ........+ ..|...|.+++|+|++++|++++.|+.|++||+                  ..++   ....+.. |...
T Consensus        88 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~------------------~~~~~~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           88 GTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYF------------------EQENDWWVSKHLKRPLRST  148 (377)
T ss_dssp             -CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----------------------CCCCEEECSSCCSC
T ss_pred             CceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEE------------------CCcccceeeeEeecccCCC
Confidence            522123334 689999999999999999999999999999997                  3333   3566766 8999


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCC-----------------CceeeeeeeecCCeeeEEEecCCcEEE-EEeCC
Q 016982          207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGP-----------------SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDC  268 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~-----------------~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~  268 (379)
                      |.+++|+|++++|++++.|+.|++||+...                 ..+...+ .|...|.+++|+|++++|+ ++.|+
T Consensus       149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~  227 (377)
T 3dwl_C          149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS  227 (377)
T ss_dssp             EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT
T ss_pred             eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC
Confidence            999999999999999999999999998532                 1233444 7889999999999999777 66788


Q ss_pred             CeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCC
Q 016982          269 NPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGS  348 (379)
Q Consensus       269 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  348 (379)
                      .+++|+..........                      ..                    .+.+|...|++++ |++++ 
T Consensus       228 ~i~iwd~~~~~~~~~~----------------------~~--------------------~~~~~~~~v~~~~-~s~~~-  263 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRA----------------------LI--------------------TVKLSQLPLRSLL-WANES-  263 (377)
T ss_dssp             EEC-CEECSTTSCEEE----------------------CC--------------------CEECSSSCEEEEE-EEETT-
T ss_pred             cEEEEECCCCCCccee----------------------eE--------------------eecCCCCceEEEE-EcCCC-
Confidence            9999987754320000                      00                    2357999999999 77766 


Q ss_pred             cccceEEEeecCceEEEEeCC
Q 016982          349 SRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       349 ~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                         ++|++|+.|+.+ +|+..
T Consensus       264 ---~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          264 ---AIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ---EEEEEESSSSEE-EECCC
T ss_pred             ---CEEEEEcCCcEE-EEEeC
Confidence               899999877766 66554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.9e-35  Score=259.45  Aligned_cols=253  Identities=11%  Similarity=0.133  Sum_probs=195.8

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce---------eeeEEeecCC------------CceeEEEECCCC-
Q 016982           53 HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW---------VPTLVILRLN------------RAALCVQWSPKE-  110 (379)
Q Consensus        53 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~---------~~~~~~~~~~------------~~v~~~~~~~~~-  110 (379)
                      +.+.|++++|+|++++|++|+.||.|++||+.+++.         .....+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            578999999999999999999999999999987651         1123346787            889999999998 


Q ss_pred             -CEEEEEeCCCeEEEEEeecCCce------------------------------------eEEEEEeecCCcCEEEEEEc
Q 016982          111 -NKFAVGSGAKTVCICYYEQENNW------------------------------------WVSKLIRKRHDSSVTSVAWH  153 (379)
Q Consensus       111 -~~l~~~~~d~~v~i~~~~~~~~~------------------------------------~~~~~~~~~~~~~v~~~~~~  153 (379)
                       ..|++++.|+.|++|++......                                    ...+.+..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             79999999999999999864310                                    00112225799999999999


Q ss_pred             CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE-------EeecCCcceEEEEECCCC-CEEEEEcCC
Q 016982          154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-------QLDLSFSWAFGVKWSPSG-NTLAYVGHN  225 (379)
Q Consensus       154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~sp~~-~~l~~~~~d  225 (379)
                      |++++|+++ .|+.|++||+.                 .....+.       .+..|...|.+++|+|++ ++|++++.|
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~-----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d  248 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLE-----------------ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK  248 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETT-----------------EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT
T ss_pred             CCCCEEEEe-CCCeEEEEECC-----------------CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC
Confidence            999999998 79999999972                 1233333       356788999999999998 999999999


Q ss_pred             CeEEEEECCCCCce---eeeeeeecC------------CeeeEEEecCCcEEEEEeCCCeEEEEecC-CCcEEEEEEecc
Q 016982          226 SMIYFVDDVGPSPL---AQNVAFRDL------------PLRDVLFVSEKMVIGVGFDCNPMVFAADE-TGIWTFIKFLDE  289 (379)
Q Consensus       226 ~~i~v~d~~~~~~~---~~~~~~~~~------------~i~~~~~s~~~~~l~~~~d~~~~i~~~~~-~~~~~~~~~~~~  289 (379)
                      |.|++||++++...   ...+..|..            .|.+++|+|+|++|+++.++.+++|+... ......      
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~------  322 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVET------  322 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCC------
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccce------
Confidence            99999999887641   366666665            89999999999999977779999999764 221111      


Q ss_pred             cccCCCCCccCCCcccccceeeccccccCccccccccccccccccc------------c---eeeeeeecccCCcccceE
Q 016982          290 RKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN------------C---INCIVPLREAGSSRITRF  354 (379)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------~---v~~~~~~~~~~~~~~~~l  354 (379)
                                                              +.+|..            .   +..++ |++++    ++|
T Consensus       323 ----------------------------------------~~~~~~~~~~l~~~~~~~~i~~~~~~~-~s~~~----~~l  357 (447)
T 3dw8_B          323 ----------------------------------------YQVHEYLRSKLCSLYENDCIFDKFECC-WNGSD----SVV  357 (447)
T ss_dssp             ----------------------------------------EESCGGGTTTHHHHHHTSGGGCCCCEE-ECTTS----SEE
T ss_pred             ----------------------------------------eeccccccccccccccccccccceEEE-ECCCC----CEE
Confidence                                                    122321            1   33477 77665    899


Q ss_pred             EEeecCceEEEEeCCCcccc
Q 016982          355 TTSGLDGKIVTWDLESQEDL  374 (379)
Q Consensus       355 ~t~~~Dg~v~iW~~~~~~~~  374 (379)
                      ++|+.||.|++||+.+++.+
T Consensus       358 ~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          358 MTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEECSTTEEEEEETTTCCEE
T ss_pred             EEeccCCEEEEEEcCCCcce
Confidence            99999999999999987654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-34  Score=253.31  Aligned_cols=247  Identities=17%  Similarity=0.259  Sum_probs=209.1

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++|+|+|+|++||+|+.||.|+|||+.++  +.+..+.+|...+.+++++  +..|++++.|+.+++||..
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~  217 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVR  217 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETT
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeec
Confidence            34578889999999999999999999999999999987  7888999999999998875  6799999999999999988


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee-EEEEEeecCCcCEEEEEEcCCC-cEEEE-
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW-VSKLIRKRHDSSVTSVAWHPNN-VFLAT-  161 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~-~~l~~-  161 (379)
                      ..... ...+..|...+..+.|+|+++++++++.|+.+++|+...+.... ..... ..|...|.+++|+|++ ..+++ 
T Consensus       218 ~~~~~-~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          218 VAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             SSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEE
T ss_pred             cccee-eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEE
Confidence            75432 23346799999999999999999999999999999998765321 12333 6889999999999976 55554 


Q ss_pred             -eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc--CCCeEEEEECCCCCc
Q 016982          162 -TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--HNSMIYFVDDVGPSP  238 (379)
Q Consensus       162 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~v~d~~~~~~  238 (379)
                       |+.|+.|++||+                  .+++++..+..+ ..+.++.|+|+++.+++++  .|+.|++||+.+++ 
T Consensus       296 ~gs~D~~I~iwd~------------------~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~-  355 (420)
T 4gga_A          296 GGTSDRHIRIWNV------------------CSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-  355 (420)
T ss_dssp             ECTTTCEEEEEET------------------TTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-
T ss_pred             eecCCCEEEEEeC------------------Cccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc-
Confidence             457999999997                  677777777664 5688999999999988765  78999999998876 


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      ++..+.+|...|++++|+|+|++|+ ++.|+.|++|+..+
T Consensus       356 ~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            4588899999999999999999887 67889999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-35  Score=275.71  Aligned_cols=261  Identities=17%  Similarity=0.191  Sum_probs=209.3

Q ss_pred             EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCeEEEE
Q 016982           48 HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK--ENKFAVGSGAKTVCIC  125 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~i~  125 (379)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+.++..........|...|.+++|+|+  +++|++++.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            46789999999999999999999999999999999986654455556789999999999988  9999999999999999


Q ss_pred             EeecCCceeEEEEEeecCCcCEEEEEEcCC--CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          126 YYEQENNWWVSKLIRKRHDSSVTSVAWHPN--NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      |+.++... ....+ ..|...|.+++|+|+  ++++++++.||.|++||+..                ........+..|
T Consensus        83 d~~~~~~~-~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~----------------~~~~~~~~~~~~  144 (753)
T 3jro_A           83 KEENGRWS-QIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE----------------NGTTSPIIIDAH  144 (753)
T ss_dssp             EEETTEEE-EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS----------------SSCCCCEEEECC
T ss_pred             ECCCCccc-ccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec----------------CCCcceeEeecC
Confidence            99987521 23334 689999999999999  99999999999999999721                112334556788


Q ss_pred             CcceEEEEECC-------------CCCEEEEEcCCCeEEEEECCCCC---ceeeeeeeecCCeeeEEEecC---CcEEE-
Q 016982          204 FSWAFGVKWSP-------------SGNTLAYVGHNSMIYFVDDVGPS---PLAQNVAFRDLPLRDVLFVSE---KMVIG-  263 (379)
Q Consensus       204 ~~~v~~~~~sp-------------~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~i~~~~~s~~---~~~l~-  263 (379)
                      ...|.+++|+|             ++.+|++++.||.|++||++++.   .....+..|..+|.+++|+|+   +++++ 
T Consensus       145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s  224 (753)
T 3jro_A          145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  224 (753)
T ss_dssp             SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence            89999999999             58999999999999999998764   244566788999999999999   88877 


Q ss_pred             EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeee
Q 016982          264 VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPL  343 (379)
Q Consensus       264 ~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  343 (379)
                      ++.|+.+++|+.........                        ...                 ....+|...|++++ |
T Consensus       225 ~s~Dg~I~iwd~~~~~~~~~------------------------~~~-----------------~~~~~~~~~v~~l~-~  262 (753)
T 3jro_A          225 VSQDRTCIIWTQDNEQGPWK------------------------KTL-----------------LKEEKFPDVLWRAS-W  262 (753)
T ss_dssp             EESSSCEEEEEESSSSSCCB------------------------CCB-----------------SSSSCCSSCCCCEE-E
T ss_pred             EecCCEEEEecCCCCCCcce------------------------eEE-----------------eccCCCCCceEEEE-E
Confidence            66788999998765321000                        000                 02246888999999 7


Q ss_pred             cccCCcccceEEEeecCceEEEEeCCCcc
Q 016982          344 REAGSSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       344 ~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                      ++++    ++|++|+.||.|++|++.++.
T Consensus       263 spdg----~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          263 SLSG----NVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CTTT----CCEEEECSSSCEECCBCCSSS
T ss_pred             cCCC----CEEEEEcCCCEEEEEecCCCC
Confidence            7665    899999999999999998643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.4e-35  Score=249.07  Aligned_cols=271  Identities=15%  Similarity=0.121  Sum_probs=206.4

Q ss_pred             EEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc-eeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCeEEE
Q 016982           47 LHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-WVPTLVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCI  124 (379)
Q Consensus        47 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i  124 (379)
                      .....+|.+.|.+++|+|++++|++++.|+.|++|++.+++ .........|...|.+++|+|+++ +|++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            44456899999999999999999999999999999998876 111223357899999999999999 9999999999999


Q ss_pred             EEe-ecCCceeEEEEEeec--CCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          125 CYY-EQENNWWVSKLIRKR--HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       125 ~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      ||+ ....    ...+ ..  |...|.+++|+| +++|++++.|+.|++||+........         ....+++..+.
T Consensus        84 wd~~~~~~----~~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~  148 (342)
T 1yfq_A           84 VDLIGSPS----FQAL-TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI---------AVKNLNSNNTK  148 (342)
T ss_dssp             ECSSSSSS----EEEC-BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE---------EEEESCSSSSS
T ss_pred             EEeccCCc----eEec-cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc---------cccCCeeeEEe
Confidence            999 7775    2444 67  999999999999 99999999999999999721000000         00033444444


Q ss_pred             cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCc-eeeeeeeecCCeeeEEEec-CCcEEE-EEeCCCeEEEEecC
Q 016982          202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG-PSP-LAQNVAFRDLPLRDVLFVS-EKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~-~~~-~~~~~~~~~~~i~~~~~s~-~~~~l~-~~~d~~~~i~~~~~  277 (379)
                       |...+.+++|+|++  +++++.|+.|++||+++ ... .......+...+.+++|+| ++++++ ++.|+.+.+|+.+.
T Consensus       149 -~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~  225 (342)
T 1yfq_A          149 -VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             -SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             -eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcC
Confidence             67889999999988  88899999999999987 543 2233445778899999999 998877 66788999998765


Q ss_pred             C------CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCccc
Q 016982          278 T------GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRI  351 (379)
Q Consensus       278 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  351 (379)
                      .      ............   .                                  .-.+|...|++++ |++++    
T Consensus       226 ~~~~~~~~~~~~~~~~~~~---~----------------------------------~~~~~~~~i~~~~-~s~~~----  263 (342)
T 1yfq_A          226 QGDDYNSSKRFAFRCHRLN---L----------------------------------KDTNLAYPVNSIE-FSPRH----  263 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCC---T----------------------------------TCCSSCCCEEEEE-ECTTT----
T ss_pred             CCcccccccceeeeccccc---c----------------------------------cccccceeEEEEE-EcCCC----
Confidence            4      111111100000   0                                  0024667999999 76665    


Q ss_pred             ceEEEeecCceEEEEeCCCccccccC
Q 016982          352 TRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       352 ~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      ++|++++.||.|++||+.+++.+..+
T Consensus       264 ~~l~~~~~dg~i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          264 KFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             CCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             CEEEEecCCceEEEEcCccHhHhhhh
Confidence            89999999999999999998877654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-34  Score=247.98  Aligned_cols=317  Identities=9%  Similarity=0.028  Sum_probs=210.2

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEecc
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQE   84 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~   84 (379)
                      ...|.+.|++++|+|||++||+|+.+ .+++|++.+.  +.......  ..+..+++.++++.+ ++++.|++|++||+.
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~   89 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPV--AHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV   89 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSS-EEEEEEETTE--EEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETT
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCc--ceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECC
Confidence            36689999999999999999999876 5789999875  33333322  247788899888877 567778999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecC-CceeEEEEEeecCCcCEEEEEEcCCCcEEEE--
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE-NNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT--  161 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~--  161 (379)
                      +++.+..+   .+...|.+++|+++.  ++++ .++.|++||+... +.   ...+ ..   +...+++++  .++++  
T Consensus        90 ~~~~~~~~---~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~---~~~~-~~---~~~~~~~s~--~~la~~s  154 (355)
T 3vu4_A           90 KKQDVSRI---KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR---ITDD-IR---FGGVCEFSN--GLLVYSN  154 (355)
T ss_dssp             TTEEEEEE---ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB---SSCC-EE---EEEEEEEET--TEEEEEE
T ss_pred             CCcEEEEE---ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee---eEEe-cc---CCceEEEEc--cEEEEeC
Confidence            99866654   367799999999764  4444 3789999999877 32   2222 11   344566676  56665  


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccce-EEEeecCCcceEEEEECCCCCEEEEEcCCCe-EEEEECCCCCce
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ-ILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM-IYFVDDVGPSPL  239 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~-i~v~d~~~~~~~  239 (379)
                      |+.+|.|++||+............   .......+ +..+.+|...|.+++|+|+|++|++++.|++ |++||+++++. 
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~---~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~-  230 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQG---VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL-  230 (355)
T ss_dssp             SSCTTCEEEEECCC---------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE-
T ss_pred             CCcCcEEEEEECCCCCcccccccc---ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE-
Confidence            688999999997321100000000   00000112 6778899999999999999999999999998 99999998774 


Q ss_pred             eeeee-e-ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccc
Q 016982          240 AQNVA-F-RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKY  316 (379)
Q Consensus       240 ~~~~~-~-~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (379)
                      +..+. + |..+|.+++|+|+|++|+ ++.|+.+++|+......-+. ..+.....+   .......  .+..+.     
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~-~~~~~~~~~---~~~~~~~--~~~~~~-----  299 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKR-HALKGWINM---KYFQSEW--SLCNFK-----  299 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCS-EETTTTEEC---CCCCCSS--CSEEEE-----
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccc-ccccceeec---ccccccc--ceeEEE-----
Confidence            46666 4 889999999999999888 66788999999865321000 000000000   0000000  000000     


Q ss_pred             cCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccc
Q 016982          317 GVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDL  374 (379)
Q Consensus       317 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~  374 (379)
                                  ....+......++ |++++    .+|++++.||.+++|++..++..
T Consensus       300 ------------~~~~~~~~~~~~a-~~~d~----~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          300 ------------LSVDKHVRGCKIA-WISES----SLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             ------------CCCCTTCCCCEEE-ESSSS----EEEEEETTTTEEEEEEEEEETTT
T ss_pred             ------------eccCCCCCceEEE-EeCCC----CEEEEEeCCCeEEEEEEEcCCCC
Confidence                        1112233345567 77666    89999999999999999875543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.5e-35  Score=250.20  Aligned_cols=206  Identities=11%  Similarity=0.006  Sum_probs=172.4

Q ss_pred             cCcceeEEEeCCCCcEEEEE--ecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            9 FAQCITCHAWSPDHAMVAFC--PNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      +...+.+++|||||+++|++  +.|+.|+|||+.+.  +.+..+. |...|.+++|+|+|++|++++.+ .+.+|+..++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~  207 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG  207 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT--EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC--cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence            44568899999999998755  46899999999987  6666665 77889999999999999998865 5677777777


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC----eEEEEEeecCCceeE-EEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK----TVCICYYEQENNWWV-SKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~i~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      +.........|...+.+++|+|+++.+++++.|+    .+++|++........ ...+ ..|...|++++|+|++++||+
T Consensus       208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~Spdg~~las  286 (365)
T 4h5i_A          208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV-TNRFKGITSMDVDMKGELAVL  286 (365)
T ss_dssp             CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE-ESSCSCEEEEEECTTSCEEEE
T ss_pred             cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeee-cCCCCCeEeEEECCCCCceEE
Confidence            6555544466888999999999999999999877    577888876653222 2233 688999999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      |+.|+.|+|||+                  .+++++..+ .+|...|++++|+|||++|++++.|++|+|||+....
T Consensus       287 gs~D~~V~iwd~------------------~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          287 ASNDNSIALVKL------------------KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             EETTSCEEEEET------------------TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             EcCCCEEEEEEC------------------CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            999999999997                  678888875 7899999999999999999999999999999997643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.7e-34  Score=251.08  Aligned_cols=261  Identities=13%  Similarity=0.111  Sum_probs=181.0

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceE---EEEEeccCCCceEEEEEcC--------CCCEEEEEeCCCeEEEE
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWE---KLHVLQKHDQIVSGIDWSV--------RSNRIVTVSHDRNSYVW   81 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~---~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~vw   81 (379)
                      +....+++++.+||+++.|++|+|||..+++..   .+..+.+|.+.|++++|+|        ++++|++++.|++|+||
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            333444456678999999999999999987432   3345789999999999998        78999999999999999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEE---------------------EE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSK---------------------LI  139 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~---------------------~~  139 (379)
                      |+.++.....  ...|..++.+++|+|++ ++|++++.|+.|++||+.++.......                     ..
T Consensus       172 d~~~~~~~~~--~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          172 RLTDEGPILA--GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             EEETTEEEEE--EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred             ECCCCceeee--ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence            9988874443  36788999999999987 489999999999999998764210000                     00


Q ss_pred             eecCCcCEEEEEEc-CCCcEEEEeeCCCeEEEEeccccccccccccC-CCccCCcccceEEEeecCCcceEEEEECC--C
Q 016982          140 RKRHDSSVTSVAWH-PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE-GTSSDTKFGEQILQLDLSFSWAFGVKWSP--S  215 (379)
Q Consensus       140 ~~~~~~~v~~~~~~-p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~  215 (379)
                      ..+|...+.++.|+ |+++.|++++.|+.+++||+............ .................+...+ ...|+|  +
T Consensus       250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  328 (393)
T 4gq1_A          250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACPHPRYM  328 (393)
T ss_dssp             --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEECSSCT
T ss_pred             cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEEccCCC
Confidence            13577788899987 79999999999999999997421110000000 0000000001111122222222 233444  4


Q ss_pred             CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                      +.++++++.||.|++||+.++... .....|..+|.+++|+|||++||+++++.+.+|.+.+
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~-~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~g  389 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSN-SIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLMG  389 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCC-EEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred             CEEEEEECCCCEEEEEECCCCcEE-EEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence            456778889999999999887754 5566788899999999999999999999998887543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.9e-33  Score=245.25  Aligned_cols=250  Identities=11%  Similarity=0.061  Sum_probs=200.9

Q ss_pred             ccCcceeEEEeCCCCcEE-EEEecCCeEEEEEec--CCceEEEEEec--cCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            8 QFAQCITCHAWSPDHAMV-AFCPNNNEVHIYKLI--QEKWEKLHVLQ--KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      .|.+.|++++|+|++++| ++|+.||.|++||+.  ++  +.+..+.  .|...|.+++|+|++++|++++.++.+++|+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            566789999999999996 889999999999998  65  4445554  5678999999999999999999999999999


Q ss_pred             ccCCceee--eEEeecCCCceeEEEECCC---CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           83 QEGSEWVP--TLVILRLNRAALCVQWSPK---ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        83 ~~~~~~~~--~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      +.+++...  ...+..|...|.+++|+|+   +++|++++.|+.|++||+..+..   ...+..+|...|.+++|+ +++
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~h~~~v~~~~~s-d~~  253 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI---VDKWLFGHKHFVSSICCG-KDY  253 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC---EEEECCCCSSCEEEEEEC-STT
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce---eeeeecCCCCceEEEEEC-CCC
Confidence            98876432  1133568899999999999   99999999999999999988763   334326899999999999 999


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-------------------------cCCcceEEEEE
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------------------------LSFSWAFGVKW  212 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~v~~~~~  212 (379)
                      +|++++.|+.|++||+                  .+++++..+.                         .....|..++|
T Consensus       254 ~l~s~~~d~~v~vwd~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDW------------------KTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             EEEEEESSSEEEEEET------------------TTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             EEEEEeCCCeEEEEEC------------------CCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            9999999999999997                  4455555443                         22356899999


Q ss_pred             CCCCCEEEEEc-CCCeEEEEEC--CCCC--ceeeeeeeecCCeeeEEEecCCcEEEEEe-------CCCeEEEEecC-CC
Q 016982          213 SPSGNTLAYVG-HNSMIYFVDD--VGPS--PLAQNVAFRDLPLRDVLFVSEKMVIGVGF-------DCNPMVFAADE-TG  279 (379)
Q Consensus       213 sp~~~~l~~~~-~d~~i~v~d~--~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------d~~~~i~~~~~-~~  279 (379)
                      +|++++|++++ .++.|++|++  ....  ..+..+..+ ..+.+++|+|++.+++++.       +..+.+|..+. .+
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~  394 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNEN  394 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence            99999999988 8999999999  4432  344556665 7899999999655555443       44578998775 34


Q ss_pred             cEE
Q 016982          280 IWT  282 (379)
Q Consensus       280 ~~~  282 (379)
                      .|.
T Consensus       395 ~~~  397 (450)
T 2vdu_B          395 SFV  397 (450)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            454

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-35  Score=254.93  Aligned_cols=221  Identities=12%  Similarity=0.054  Sum_probs=178.8

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCC-----ceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ-----IVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      +|.+.|++++|||+|.+||+++.||.|++|+.++    .+..+. |..     .|.+++|||+|++|++|+.||+|++||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence            5578999999999999999999999999999543    666667 665     499999999999999999999999999


Q ss_pred             ccCCce-------eeeEE--eecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982           83 QEGSEW-------VPTLV--ILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH  153 (379)
Q Consensus        83 ~~~~~~-------~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  153 (379)
                      +.++..       ...+.  ..+|...|.+++|+|+|  +++++.|+.+++|++..+........+...|...|.+++|+
T Consensus       158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs  235 (588)
T 2j04_A          158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV  235 (588)
T ss_dssp             CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE
T ss_pred             CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE
Confidence            998753       22221  14567899999999999  88888999999999988763111233424788999999999


Q ss_pred             CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEE--CCCCCEEEEEcCCCeEEEE
Q 016982          154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKW--SPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~l~~~~~d~~i~v~  231 (379)
                        ++.|++++ ++.|++||+                  ..++......+|...+..++|  +|++..|++++.+|. ++|
T Consensus       236 --g~~LASa~-~~tIkLWd~------------------~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          236 --DYKVVLTC-PGYVHKIDL------------------KNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             --TTEEEEEC-SSEEEEEET------------------TTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred             --CCEEEEEe-CCeEEEEEC------------------CCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence              68888887 699999996                  334442333379999999999  999999999999999 999


Q ss_pred             ECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEe
Q 016982          232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~  275 (379)
                      ...                 .++++||+.++++. |+.+++|+.
T Consensus       294 ~~d-----------------~~~~spd~~l~a~~-d~~v~lW~~  319 (588)
T 2j04_A          294 LED-----------------ELHVTADNIIAPYL-EKKFKKWST  319 (588)
T ss_dssp             ESS-----------------SEEEECCCSSHHHH-HHHHHHTTT
T ss_pred             eec-----------------cEEECCCceEEEEc-CCEEEEEEC
Confidence            866                 25688888887764 778877764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.7e-32  Score=231.99  Aligned_cols=248  Identities=15%  Similarity=0.228  Sum_probs=203.5

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|+|++++||+|+.||.|++|++.++  +.+..+.+|...+.++.+  ++..+++++.++.+++|+..
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~  137 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR  137 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecC
Confidence            34578889999999999999999999999999999988  788889999988877655  46799999999999999988


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-E--EEE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-F--LAT  161 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~--l~~  161 (379)
                      ..... ......|...+..+.++++++++++++.|+.|++||+.+++...........+...|.+++++|++. .  +++
T Consensus       138 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  216 (318)
T 4ggc_A          138 VAEHH-VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG  216 (318)
T ss_dssp             SSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE
T ss_pred             CCcee-EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe
Confidence            76532 2334678999999999999999999999999999999876532111222267888999999999764 3  346


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc--CCCeEEEEECCCCCce
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--HNSMIYFVDDVGPSPL  239 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~v~d~~~~~~~  239 (379)
                      ++.++.|++||.                  ........ ..+...+..+.|+|++..+++++  .|+.|++||+.+++ +
T Consensus       217 ~~~~~~i~lwd~------------------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~-~  276 (318)
T 4ggc_A          217 GTSDRHIRIWNV------------------CSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA-K  276 (318)
T ss_dssp             CTTTCEEEEEET------------------TTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC-E
T ss_pred             cCCCCEEEEEec------------------cccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc-E
Confidence            678999999996                  33444333 34567799999999999887654  78999999999876 5


Q ss_pred             eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecC
Q 016982          240 AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADE  277 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~  277 (379)
                      +..+.+|..+|++++|+|+|++|+ ++.|+.+++|+..+
T Consensus       277 ~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            588899999999999999999887 67889999998654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.9e-32  Score=241.83  Aligned_cols=279  Identities=8%  Similarity=0.004  Sum_probs=216.3

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEE-----EeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLH-----VLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ...+.+++|+|++.++++++.++.|++||+.++  +...     .+.+|...|.+++|+|+++++++++.|+.|++||+.
T Consensus       122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred             CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence            455779999998788888888999999999987  3444     455788899999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      +++....+  ..+...+.+++|+|+++.+++++ .|+.|++||++++.   ....+  .....+.+++|+|+++++++++
T Consensus       200 ~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---~~~~~--~~~~~~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          200 TLAYKATV--DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL---EIRKT--DKIGLPRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             TCCEEEEE--ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---EEEEC--CCCSEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEE--cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---EEEEe--cCCCCceEEEEcCCCCEEEEEE
Confidence            98866555  46788999999999999886554 79999999998775   33443  3345689999999999998887


Q ss_pred             --------CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE-EEEcCCCeEEEEECC
Q 016982          164 --------TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL-AYVGHNSMIYFVDDV  234 (379)
Q Consensus       164 --------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~v~d~~  234 (379)
                              .|+.|++||+                  .+++.+..+ .+...+.+++|+|+++.+ ++++.++.|++||+.
T Consensus       273 ~~~~~~~~~dg~i~~~d~------------------~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSM------------------DKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             EESCTTCSCCEEEEEEET------------------TTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             CCCCccccCCCeEEEEEC------------------CCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence                    4889999997                  445554444 344578899999999755 566899999999998


Q ss_pred             CCCceeeeeeeecCCeeeEEEecCCcEEEEEe----------------CCCeEEEEecCCCcEEEEEEecccccCCCCCc
Q 016982          235 GPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGF----------------DCNPMVFAADETGIWTFIKFLDERKTSSSGPK  298 (379)
Q Consensus       235 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----------------d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (379)
                      +++ ....+. +...+.+++|+|+|++++++.                |+.+++|+.....   ....+           
T Consensus       334 ~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---~~~~~-----------  397 (433)
T 3bws_A          334 EKK-VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---VKEFW-----------  397 (433)
T ss_dssp             TTE-EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---EEEEE-----------
T ss_pred             CCc-EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc---EEEEe-----------
Confidence            765 334544 667899999999999777443                3478888865432   11111           


Q ss_pred             cCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee-cCceEEEEeCCC
Q 016982          299 YGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTWDLES  370 (379)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~v~iW~~~~  370 (379)
                                                      . +...+.+++ +++++    ++|++++ .|+.|++|+++.
T Consensus       398 --------------------------------~-~~~~~~~~~-~s~dg----~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          398 --------------------------------E-AGNQPTGLD-VSPDN----RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             --------------------------------E-CSSSEEEEE-ECTTS----CEEEEEETTTTEEEEEEETT
T ss_pred             --------------------------------c-CCCCCceEE-EcCCC----CEEEEEECCCCeEEEEEecC
Confidence                                            1 234678888 77665    7888776 499999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.1e-31  Score=233.86  Aligned_cols=271  Identities=13%  Similarity=0.116  Sum_probs=210.3

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeeEEeecCCCce
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA  101 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v  101 (379)
                      .++++++.|+.|++||+.++  +.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++....+.   +...+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~--~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~---~~~~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN--KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AGSSP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT--EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CSSSE
T ss_pred             EEEEEcCCCCEEEEEECCCC--eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE---CCCCc
Confidence            46788889999999999987  6777777765 58999999999877 667789999999999998665543   34489


Q ss_pred             eEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE-EEeeCCCeEEEEeccccccc
Q 016982          102 LCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL-ATTSTDGKCRVFSTFIKGVD  179 (379)
Q Consensus       102 ~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~~i~v~d~~~~~~~  179 (379)
                      .+++|+|+++.|++++ .++.|++||+.+++   ....+  .+...+.+++|+|+++++ ++++.++.|++||+      
T Consensus        77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~---~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~------  145 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNT---VAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT------  145 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEET------
T ss_pred             cceEECCCCCEEEEEECCCCEEEEEECCCCe---EEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEEC------
Confidence            9999999999886554 57999999998876   34444  345578999999999877 67888999999997      


Q ss_pred             cccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE-EEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecC
Q 016982          180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL-AYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE  258 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~  258 (379)
                                  .+++.+..+..+ ..+..++|+|++++| ++++.++.|++||+.+++ ....+. +...+.+++|+|+
T Consensus       146 ------------~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~  210 (391)
T 1l0q_A          146 ------------VTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVK-VEAAPSGIAVNPE  210 (391)
T ss_dssp             ------------TTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSEEEEEEECTT
T ss_pred             ------------CCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEEe-cCCCccceEECCC
Confidence                        566777777665 456999999999987 567789999999998865 334443 4667899999999


Q ss_pred             CcEEEEE----eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccc
Q 016982          259 KMVIGVG----FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHV  334 (379)
Q Consensus       259 ~~~l~~~----~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  334 (379)
                      |++|+++    .++.+.+|+.........   +                                           ..|.
T Consensus       211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~---~-------------------------------------------~~~~  244 (391)
T 1l0q_A          211 GTKAYVTNVDKYFNTVSMIDTGTNKITAR---I-------------------------------------------PVGP  244 (391)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEE---E-------------------------------------------ECCS
T ss_pred             CCEEEEEecCcCCCcEEEEECCCCeEEEE---E-------------------------------------------ecCC
Confidence            9877744    478999998765432111   1                                           1232


Q ss_pred             cceeeeeeecccCCcccceE-EEeecCceEEEEeCCCccccccC
Q 016982          335 NCINCIVPLREAGSSRITRF-TTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       335 ~~v~~~~~~~~~~~~~~~~l-~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                       .+.+++ +++++    ++| ++++.|+.|++||+.+++.++.+
T Consensus       245 -~~~~~~-~s~dg----~~l~~s~~~d~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          245 -DPAGIA-VTPDG----KKVYVALSFXNTVSVIDTATNTITATM  282 (391)
T ss_dssp             -SEEEEE-ECTTS----SEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             -CccEEE-EccCC----CEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence             467888 77665    655 78899999999999988776544

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=246.30  Aligned_cols=224  Identities=17%  Similarity=0.160  Sum_probs=187.7

Q ss_pred             CCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeeEEe-----------ecCC
Q 016982           31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQEGSEWVPTLVI-----------LRLN   98 (379)
Q Consensus        31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----------~~~~   98 (379)
                      ++.+++|++...  +....+.+|.+.|++++|+| ++++|++++.||.|++||+.+++....+..           ..|.
T Consensus        22 ~~~~~v~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (408)
T 4a11_B           22 ESTRRVLGLELN--KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR   99 (408)
T ss_dssp             HHHHHHHTEEEC--TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred             cCcceeeccccC--cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence            445777877765  45667788999999999999 999999999999999999998865544432           1388


Q ss_pred             CceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC---cEEEEeeCCCeEEEEecc
Q 016982           99 RAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN---VFLATTSTDGKCRVFSTF  174 (379)
Q Consensus        99 ~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~~d~~i~v~d~~  174 (379)
                      ..|.+++|+| ++++|++++.|+.|++||+....   ....+  .+...+.++.|+|.+   .++++++.++.|++||+ 
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~-  173 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ---TADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL-  173 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE---EEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES-
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc---cceec--cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC-
Confidence            9999999999 78899999999999999998876   34443  477889999999854   59999999999999997 


Q ss_pred             ccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCceeeee----------
Q 016982          175 IKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN-TLAYVGHNSMIYFVDDVGPSPLAQNV----------  243 (379)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~----------  243 (379)
                                       ..++.+..+..|...|.+++|+|++. +|++++.||.|++||++........+          
T Consensus       174 -----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          174 -----------------KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQA  236 (408)
T ss_dssp             -----------------SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred             -----------------CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccccee
Confidence                             56777888889999999999999998 58899999999999998765444444          


Q ss_pred             -----eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          244 -----AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       244 -----~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                           ..|...|.+++|+|++++|+ ++.|+.+++|+.....
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             eccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence                 46788899999999998877 6678899999977543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.8e-32  Score=240.73  Aligned_cols=238  Identities=14%  Similarity=0.227  Sum_probs=203.1

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .+.+|...|++++|  ++++|++|+.||.|++||+.++  +.+..+.+|...|.+++|++  ++|++++.|+.|++||+.
T Consensus       168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  241 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA  241 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECS
T ss_pred             EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCC
Confidence            45679999999999  7889999999999999999987  67888999999999999974  599999999999999998


Q ss_pred             CCceeee-EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           85 GSEWVPT-LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        85 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      +++.... ....+|...|.+++|  +++++++++.|+.|++||+++..   ....+ ..|...|.+++|  +++++++|+
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~---~~~~~-~~~~~~v~~~~~--~~~~l~~g~  313 (435)
T 1p22_A          242 SPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE---FVRTL-NGHKRGIACLQY--RDRLVVSGS  313 (435)
T ss_dssp             SSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCC---EEEEE-ECCSSCEEEEEE--ETTEEEEEE
T ss_pred             CCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCc---EEEEE-cCCCCcEEEEEe--CCCEEEEEe
Confidence            8764322 334678899999999  68899999999999999999887   45666 789999999999  468999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc-----
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP-----  238 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~-----  238 (379)
                      .||.|++||+                  .+++++..+.+|...|.+++|  ++.+|++++.||.|++||+.+...     
T Consensus       314 ~dg~i~iwd~------------------~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  373 (435)
T 1p22_A          314 SDNTIRLWDI------------------ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA  373 (435)
T ss_dssp             TTSCEEEEET------------------TTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred             CCCeEEEEEC------------------CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence            9999999997                  678889999999999999999  788999999999999999865431     


Q ss_pred             ---eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCC
Q 016982          239 ---LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       239 ---~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                         ....+..|..+|.+++|  ++.+|+ ++.|+.+++|+....
T Consensus       374 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          374 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             TTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred             cchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence               45777889999999999  566555 667999999987654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.3e-32  Score=234.14  Aligned_cols=302  Identities=12%  Similarity=0.041  Sum_probs=192.0

Q ss_pred             CcceeEEEeC---CCCcEEEEEecCCeEEEEEecCCc--------eEEEEEeccCCCceEEEEEc---------------
Q 016982           10 AQCITCHAWS---PDHAMVAFCPNNNEVHIYKLIQEK--------WEKLHVLQKHDQIVSGIDWS---------------   63 (379)
Q Consensus        10 ~~~i~~~~~s---~~~~~l~~~~~dg~i~i~~~~~~~--------~~~~~~~~~~~~~v~~~~~~---------------   63 (379)
                      +....++.|.   |++..+++++.++.|.+|+.....        ...+..+. +..++..+.|+               
T Consensus        15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (393)
T 4gq1_A           15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQ-TGLPTLHLSFSSSCSYSENLHDGDGN   93 (393)
T ss_dssp             TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEE-CSSCEEEEEECTTCEEECC-------
T ss_pred             CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEe-cCCCeeeEeecCCccccccccCCCcc
Confidence            4456677774   444444444567899999874321        12222222 33344444443               


Q ss_pred             -----CCCCEEEEEeCCCeEEEEeccCCceeeeEE---eecCCCceeEEEECC--------CCCEEEEEeCCCeEEEEEe
Q 016982           64 -----VRSNRIVTVSHDRNSYVWNQEGSEWVPTLV---ILRLNRAALCVQWSP--------KENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        64 -----~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~v~i~~~  127 (379)
                           +++++|++++.|++|++||+.+++......   +.+|...|.+++|+|        ++++|++++.|++|+|||+
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence                 445689999999999999999886543222   357999999999997        7899999999999999999


Q ss_pred             ecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCcc-------CCcccceEEE
Q 016982          128 EQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS-------DTKFGEQILQ  199 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  199 (379)
                      ....   ....+ ..|...+.+++|+|++ ++|++++.|+.|++||+................       ..........
T Consensus       174 ~~~~---~~~~~-~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  249 (393)
T 4gq1_A          174 TDEG---PILAG-YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH  249 (393)
T ss_dssp             ETTE---EEEEE-EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred             CCCc---eeeee-cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence            8876   23344 6788999999999987 589999999999999985332211111000000       0000111122


Q ss_pred             eecCCcceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCC------------------eeeEEEec--C
Q 016982          200 LDLSFSWAFGVKWS-PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLP------------------LRDVLFVS--E  258 (379)
Q Consensus       200 ~~~~~~~v~~~~~s-p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~------------------i~~~~~s~--~  258 (379)
                      ..+|...+.++.|+ |+++.|++++.|+.+++||+...... ..+..|...                  .....|+|  +
T Consensus       250 ~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (393)
T 4gq1_A          250 SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY-NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM  328 (393)
T ss_dssp             --CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCT
T ss_pred             cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC-ceEeeecCccccEEEccccccccccCcceeEEEccCCC
Confidence            34677788999987 79999999999999999998765422 222222222                  22333444  3


Q ss_pred             CcEEEE-EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccce
Q 016982          259 KMVIGV-GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCI  337 (379)
Q Consensus       259 ~~~l~~-~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  337 (379)
                      +.++++ +.|+.+++|+.........                                              +.+|...|
T Consensus       329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~----------------------------------------------~~~~~~~V  362 (393)
T 4gq1_A          329 DYFATAHSQHGLIQLINTYEKDSNSI----------------------------------------------PIQLGMPI  362 (393)
T ss_dssp             TEEEEEETTTTEEEEEETTCTTCCEE----------------------------------------------EEECSSCE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEE----------------------------------------------ecCCCCcE
Confidence            445554 4588999998765432211                                              13688899


Q ss_pred             eeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          338 NCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       338 ~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                      ++|+ |+++|    ++||+++.|| +.+|++.
T Consensus       363 ~sva-fspdG----~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          363 VDFC-WHQDG----SHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEE-ECTTS----SEEEEEESSE-EEEEEEG
T ss_pred             EEEE-EcCCC----CEEEEEeCCC-eEEEEEe
Confidence            9999 77776    9999999776 5555543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.2e-32  Score=232.75  Aligned_cols=271  Identities=15%  Similarity=0.173  Sum_probs=203.7

Q ss_pred             EEEEEeccCCCceEEEEEcCC---CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe
Q 016982           45 EKLHVLQKHDQIVSGIDWSVR---SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT  121 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  121 (379)
                      +.+..+.+|...|++++|+|+   |++|++++.|+.|++||+.+...........|...|.+++|+|++++|++++.|+.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            567788999999999999999   59999999999999999997332232344679999999999999999999999999


Q ss_pred             EEEEEeecCCceeEEEEEeecCCcCEEEEEE--cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE
Q 016982          122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAW--HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ  199 (379)
Q Consensus       122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (379)
                      |++||++...   ... + ..|...|.+++|  +|++++|++++.|+.|++||+                  +.++++..
T Consensus       110 v~iwd~~~~~---~~~-~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~------------------~~~~~~~~  166 (368)
T 3mmy_A          110 AKMWDLSSNQ---AIQ-I-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT------------------RSSNPMMV  166 (368)
T ss_dssp             EEEEETTTTE---EEE-E-EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS------------------SCSSCSEE
T ss_pred             EEEEEcCCCC---cee-e-ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC------------------CCCcEEEE
Confidence            9999998876   233 3 579999999999  899999999999999999997                  55667777


Q ss_pred             eecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCCc-----EEEEEeCCCeEEE
Q 016982          200 LDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEKM-----VIGVGFDCNPMVF  273 (379)
Q Consensus       200 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~~-----~l~~~~d~~~~i~  273 (379)
                      +..+. .+.++.+.+  ..+++++.++.+++|++........... .+...+..+.+.++..     +++++.|+.+++|
T Consensus       167 ~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          167 LQLPE-RCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             EECSS-CEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             EecCC-CceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            76654 466666654  4788888999999999987654433332 2334566666666543     5558889999999


Q ss_pred             EecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccce
Q 016982          274 AADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITR  353 (379)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  353 (379)
                      +.+..........+.....                               ........+|...|++++ +++++    ++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~v~~~~-~sp~~----~~  287 (368)
T 3mmy_A          244 YINPPNPAKDNFTFKCHRS-------------------------------NGTNTSAPQDIYAVNGIA-FHPVH----GT  287 (368)
T ss_dssp             ESSCSCHHHHSEEEECSEE-------------------------------C----CCCEEECCEEEEE-ECTTT----CC
T ss_pred             ecCCCCccccceeeeeeec-------------------------------ccccccccccccceEEEE-EecCC----CE
Confidence            9876421000000000000                               000002245666899999 77665    89


Q ss_pred             EEEeecCceEEEEeCCCccccccC
Q 016982          354 FTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       354 l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      |++|+.||.|++||+.+++.++.+
T Consensus       288 l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          288 LATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EEEEccCCeEEEEECCCCcEEEEe
Confidence            999999999999999998877655

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-32  Score=234.81  Aligned_cols=238  Identities=9%  Similarity=0.015  Sum_probs=182.7

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCC------cee
Q 016982           61 DWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN------NWW  134 (379)
Q Consensus        61 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~------~~~  134 (379)
                      .+.+++++|++|+.||.|++||+.+++....+.    ...|.++.|+|+   +++++.|+.|++|+.....      ...
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~  115 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK  115 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc
Confidence            345678899999999999999999998666554    467888899988   9999999999999765321      111


Q ss_pred             EEEEEeecCCcCEEEEEEcC--CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cCCcceEEEE
Q 016982          135 VSKLIRKRHDSSVTSVAWHP--NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSFSWAFGVK  211 (379)
Q Consensus       135 ~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  211 (379)
                      ........|...|.+++|+|  +++++++++.|+.|++||+                  ..++++.... .+...+.+++
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~------------------~~~~~~~~~~~~~~~~i~~~~  177 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY------------------EDDSQYIVHSAKSDVEYSSGV  177 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES------------------SSSCEEEEECCCSSCCCCEEE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC------------------CCCcEEEEEecCCCCceEEEE
Confidence            23333357778999999999  9999999999999999997                  5566655553 3455799999


Q ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEeccc
Q 016982          212 WSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDER  290 (379)
Q Consensus       212 ~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~  290 (379)
                      |+|++.+|++|+.||.|++||++++......+.. |..+|.+++|+|+|.+|+++.++.+++|+.........       
T Consensus       178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~-------  250 (343)
T 3lrv_A          178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLA-------  250 (343)
T ss_dssp             ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBS-------
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCccee-------
Confidence            9999999999999999999999988755366776 89999999999999999977788999998765431110       


Q ss_pred             ccCCCCCccCCCcccccceeeccccccCccccccccccccccccccee--eeeeecccCCcccceEEEeec-CceEEEEe
Q 016982          291 KTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCIN--CIVPLREAGSSRITRFTTSGL-DGKIVTWD  367 (379)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~~~~l~t~~~-Dg~v~iW~  367 (379)
                                      +.                    .+..|...+.  +++ |++++    ++|++++. |+.|++|+
T Consensus       251 ----------------~~--------------------~~~~~~~~~~~~~~~-~~~~g----~~l~~~s~~d~~i~v~~  289 (343)
T 3lrv_A          251 ----------------YP--------------------TYTIPEFKTGTVTYD-IDDSG----KNMIAYSNESNSLTIYK  289 (343)
T ss_dssp             ----------------SC--------------------CCBC-----CCEEEE-ECTTS----SEEEEEETTTTEEEEEE
T ss_pred             ----------------ec--------------------ccccccccccceEEE-ECCCC----CEEEEecCCCCcEEEEE
Confidence                            00                    0012333333  577 77665    89999998 99999999


Q ss_pred             CCCc
Q 016982          368 LESQ  371 (379)
Q Consensus       368 ~~~~  371 (379)
                      +.+.
T Consensus       290 ~~~~  293 (343)
T 3lrv_A          290 FDKK  293 (343)
T ss_dssp             ECTT
T ss_pred             Eccc
Confidence            8654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.2e-30  Score=223.25  Aligned_cols=232  Identities=15%  Similarity=0.285  Sum_probs=183.8

Q ss_pred             ceeccCcceeEEEeCC--CCcEEEEEecCCeEEEEEecCCc-------eEEEEEeccCCCceEEEEEcCC--CCEEEEEe
Q 016982            5 AVHQFAQCITCHAWSP--DHAMVAFCPNNNEVHIYKLIQEK-------WEKLHVLQKHDQIVSGIDWSVR--SNRIVTVS   73 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~   73 (379)
                      .+.+|..+|++++|+|  ++++|++|+.||.|++||+.+++       ++....+..|...|.+++|+|+  +++|++++
T Consensus        52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  131 (351)
T 3f3f_A           52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG  131 (351)
T ss_dssp             EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence            3467999999999999  69999999999999999998752       2567888899999999999999  99999999


Q ss_pred             CCCeEEEEeccCCceeeeEEe-----------ecCCCceeEEEECCC---CCEEEEEeCCCeEEEEEeecCCceeEEEEE
Q 016982           74 HDRNSYVWNQEGSEWVPTLVI-----------LRLNRAALCVQWSPK---ENKFAVGSGAKTVCICYYEQENNWWVSKLI  139 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  139 (379)
                      .|+.|++||+.+++....+..           ..+...+.+++|+|+   +..+++++.++.+.+|+...... .....+
T Consensus       132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~  210 (351)
T 3f3f_A          132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL-HVAAKL  210 (351)
T ss_dssp             TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE-EEEEEC
T ss_pred             CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce-eeeeec
Confidence            999999999988764433321           246788999999997   89999999999997766655542 223344


Q ss_pred             eecCCcCEEEEEEcCCC----cEEEEeeCCCeEEEEeccccccccccccC----------------------------CC
Q 016982          140 RKRHDSSVTSVAWHPNN----VFLATTSTDGKCRVFSTFIKGVDIKEKKE----------------------------GT  187 (379)
Q Consensus       140 ~~~~~~~v~~~~~~p~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----------------------------~~  187 (379)
                       ..|...|.+++|+|++    ++|++++.||.|++||+............                            ..
T Consensus       211 -~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
T 3f3f_A          211 -PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE  289 (351)
T ss_dssp             -CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred             -CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence             6899999999999998    89999999999999998532110000000                            00


Q ss_pred             ccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          188 SSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      .......+.+..+.+|...|++++|+|++++|++++.||.|++||+..+..
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             -CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             ecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence            001123366777888999999999999999999999999999999987654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3e-29  Score=218.39  Aligned_cols=239  Identities=13%  Similarity=0.140  Sum_probs=190.0

Q ss_pred             cCcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCeEEEEeccCC
Q 016982            9 FAQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRNSYVWNQEGS   86 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~   86 (379)
                      +...+.+++|+|++++| ++++.|+.|++||+.++  +.+..+..+. .+.+++|+|++++|+.+ +.++.|++||+.++
T Consensus        30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~  106 (391)
T 1l0q_A           30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (391)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC--eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence            44568999999999977 66668999999999887  5666666554 89999999999987554 46799999999998


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEE-EEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE-EEeeC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKF-AVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL-ATTST  164 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~  164 (379)
                      +....+   .+...+.+++|+|+++.+ ++++.++.|++||+.+++   ....+ .. ...+.+++|+|+++++ ++++.
T Consensus       107 ~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~-~~-~~~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          107 TVAGTV---KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---VINTV-SV-GRSPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             EEEEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEE-EC-CSSEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEE---eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc---EEEEE-ec-CCCcceEEECCCCCEEEEEeCC
Confidence            865544   345678999999999977 677779999999998776   34444 33 3567999999999877 57778


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc---CCCeEEEEECCCCCceee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG---HNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~v~d~~~~~~~~~  241 (379)
                      ++.|++||+                  .+++.+..+.. ...+.+++|+|++++|++++   .++.|++||+.+++ .+.
T Consensus       179 ~~~v~~~d~------------------~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~-~~~  238 (391)
T 1l0q_A          179 SMSISVIDT------------------VTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITA  238 (391)
T ss_dssp             TTEEEEEET------------------TTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEE
T ss_pred             CCEEEEEEC------------------CCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe-EEE
Confidence            999999997                  55566655543 56789999999999999887   68999999998875 345


Q ss_pred             eeeeecCCeeeEEEecCCcEEE-E-EeCCCeEEEEecCCC
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIG-V-GFDCNPMVFAADETG  279 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~-~-~~d~~~~i~~~~~~~  279 (379)
                      .+..+ ..+.+++|+|+|++|+ + +.|+.+++|+.....
T Consensus       239 ~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~  277 (391)
T 1l0q_A          239 RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT  277 (391)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence            56544 4578999999998764 4 568899999987643

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2e-30  Score=222.24  Aligned_cols=248  Identities=10%  Similarity=0.040  Sum_probs=174.8

Q ss_pred             EEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEE-E
Q 016982           36 IYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKF-A  114 (379)
Q Consensus        36 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~  114 (379)
                      ||++.+.  .++..+..|...|.+++|+|+|++|++|+.++ +++|++.+.+.....    +...+..+++.++++.+ +
T Consensus         3 i~s~~~~--~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~   75 (355)
T 3vu4_A            3 LGSMITR--NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ----EMRHLSKVRMLHRTNYVAF   75 (355)
T ss_dssp             ------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE----ECSCCCEEEECTTSSEEEE
T ss_pred             ccccccc--CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee----ecCCeEEEEEcCCCCEEEE
Confidence            4555554  55667788999999999999999999988765 789999877643332    22357888999988877 4


Q ss_pred             EEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc
Q 016982          115 VGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG  194 (379)
Q Consensus       115 ~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  194 (379)
                      +++.|+.|++||..+++   ....+  .+...|.+++|+++.  ++++ .++.|++||+.                  ..
T Consensus        76 ~~~~d~~v~iWd~~~~~---~~~~~--~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~------------------~~  129 (355)
T 3vu4_A           76 VTGVKEVVHIWDDVKKQ---DVSRI--KVDAPVKDLFLSREF--IVVS-YGDVISVFKFG------------------NP  129 (355)
T ss_dssp             ECSSTTEEEEEETTTTE---EEEEE--ECSSCEEEEEECSSE--EEEE-ETTEEEEEESS------------------TT
T ss_pred             EECCccEEEEEECCCCc---EEEEE--ECCCceEEEEEcCCE--EEEE-EcCEEEEEECC------------------CC
Confidence            57778999999998876   34444  467799999998764  4433 47899999972                  22


Q ss_pred             -ceEEEeecCCcceEEEEECCCCCEEEE--EcCCCeEEEEECCCCC---------------ceeeeeeeecCCeeeEEEe
Q 016982          195 -EQILQLDLSFSWAFGVKWSPSGNTLAY--VGHNSMIYFVDDVGPS---------------PLAQNVAFRDLPLRDVLFV  256 (379)
Q Consensus       195 -~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~i~v~d~~~~~---------------~~~~~~~~~~~~i~~~~~s  256 (379)
                       +.+..+..   +...+++++  .++++  ++.+|.|++||+.++.               +....+.+|..+|.+++|+
T Consensus       130 ~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s  204 (355)
T 3vu4_A          130 WKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN  204 (355)
T ss_dssp             CCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEEC
T ss_pred             ceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC
Confidence             33333333   334456676  66666  5789999999998754               1147788899999999999


Q ss_pred             cCCcEEE-EEeCCC-eEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccc-c
Q 016982          257 SEKMVIG-VGFDCN-PMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGT-H  333 (379)
Q Consensus       257 ~~~~~l~-~~~d~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h  333 (379)
                      |+|++|+ ++.|+. +++|+...........                                             .+ |
T Consensus       205 ~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~---------------------------------------------~g~h  239 (355)
T 3vu4_A          205 RKSDMVATCSQDGTIIRVFKTEDGVLVREFR---------------------------------------------RGLD  239 (355)
T ss_dssp             TTSSEEEEEETTCSEEEEEETTTCCEEEEEE---------------------------------------------CTTC
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCcEEEEEE---------------------------------------------cCCC
Confidence            9999888 667887 9999987644222110                                             24 8


Q ss_pred             ccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          334 VNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       334 ~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                      ...|++++ |++++    ++|++++.|+.|++||+.++
T Consensus       240 ~~~v~~~~-~s~~~----~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          240 RADVVDMK-WSTDG----SKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             CSCEEEEE-ECTTS----CEEEEEETTCEEEEEESSCC
T ss_pred             CCcEEEEE-ECCCC----CEEEEEECCCEEEEEEccCC
Confidence            99999999 77766    89999999999999999764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.98  E-value=1.1e-29  Score=208.52  Aligned_cols=277  Identities=9%  Similarity=0.030  Sum_probs=185.9

Q ss_pred             eeEEEeCCCCc---EEEEEecCCeEEEEEecCC-ceEEEEEeccCCCceEEEEEcCCCC-EEEEEeCCCeE-EEEec---
Q 016982           13 ITCHAWSPDHA---MVAFCPNNNEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVRSN-RIVTVSHDRNS-YVWNQ---   83 (379)
Q Consensus        13 i~~~~~s~~~~---~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i-~vw~~---   83 (379)
                      +.++-|-..|-   .++++++ ..|++|+..+. ++++++++..|..+|..+.+.||.. ++..+-.+-.+ .++-+   
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            55666654432   5667765 69999999876 5799999999999999999999763 33333222111 11111   


Q ss_pred             -cCCceeeeEEeecCCCceeEEEECCCCCEEEEEe--CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC---CCc
Q 016982           84 -EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS--GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP---NNV  157 (379)
Q Consensus        84 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~  157 (379)
                       ++......+...++...+..+   ++++.+.+++  .|+.|++|++.....  ....+ ..|...+..++|+|   ++.
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~--~~~s~-~~~~~~v~~l~fs~~~g~~~  194 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGG--GKENQ-FLMPPEETILTFAEVQGMQE  194 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSC--EEEEE-EECCCSSCEEEEEEEETSTT
T ss_pred             CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCc--eeeee-ccCCCceeeEEeeccCCCCc
Confidence             111111222223344445544   5666666644  599999999965332  34444 68888899999999   779


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC---cceEEEEECCCCCEE------------EEE
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF---SWAFGVKWSPSGNTL------------AYV  222 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l------------~~~  222 (379)
                      +|++++.|++|+|||+                  +++++++++.+|.   ..+.+++|+|+|.++            ++|
T Consensus       195 ~LaSgS~D~TIkIWDl------------------~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG  256 (356)
T 2w18_A          195 ALLGTTIMNNIVIWNL------------------KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR  256 (356)
T ss_dssp             EEEEEETTSEEEEEET------------------TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred             eEEEecCCCcEEEEEC------------------CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence            9999999999999997                  7899999997654   357788999999886            567


Q ss_pred             cCCCeEEEEECCCCCceeeee-----eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCC
Q 016982          223 GHNSMIYFVDDVGPSPLAQNV-----AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSG  296 (379)
Q Consensus       223 ~~d~~i~v~d~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  296 (379)
                      +.|++|++||..+++.+ ..+     .+|...+.+..+  ++.+++ ++.|+++++|+........              
T Consensus       257 s~D~tIklWd~~tgk~l-~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~--------------  319 (356)
T 2w18_A          257 SPVFQLIVINPKTTLSV-GVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTA--------------  319 (356)
T ss_dssp             -CCEEEEEEETTTTEEE-EEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEE--------------
T ss_pred             CCCcEEEEEECCCCEEE-EEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEE--------------
Confidence            78999999999877532 332     244434333333  367777 4569999999987655332              


Q ss_pred             CccCCCcccccceeeccccccCcccccccccccccccccceee-eeeecccCCcccceEEEeecCceEEEEeC
Q 016982          297 PKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINC-IVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                                                      .+.+|...+.+ ++ |+|++    ++|+||+.|++|||||+
T Consensus       320 --------------------------------tL~gH~~~vvs~va-fSPDG----~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          320 --------------------------------LLPPVSDQHWSFVK-WSGTD----SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --------------------------------EECCC--CCCCEEE-ECSSS----SEEEEECTTSCEEEEEE
T ss_pred             --------------------------------EecCCCCCeEEEEE-ECCCC----CEEEEEECCCcEEEecC
Confidence                                            22468776664 77 88776    99999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=4.3e-29  Score=220.36  Aligned_cols=290  Identities=9%  Similarity=-0.009  Sum_probs=216.3

Q ss_pred             CcceeEEE---eCCCCcEEEEEe--------------cCC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE
Q 016982           10 AQCITCHA---WSPDHAMVAFCP--------------NNN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV   70 (379)
Q Consensus        10 ~~~i~~~~---~s~~~~~l~~~~--------------~dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   70 (379)
                      ...+..++   |+|+++.+++.+              .++  .|..+|..++..+.+..+..+. .+.+++|+|++.+++
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~  138 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI  138 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE
Confidence            45677888   898877665432              223  4444444445456677776554 456999999777778


Q ss_pred             EEeCCCeEEEEeccCCceeeeEE---eecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE
Q 016982           71 TVSHDRNSYVWNQEGSEWVPTLV---ILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV  147 (379)
Q Consensus        71 ~~~~d~~i~vw~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v  147 (379)
                      +++.++.|++||+.+++......   ...|...+.+++|+|+++++++++.|+.|++||+++..   ....+ ..|...+
T Consensus       139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~---~~~~~-~~~~~~~  214 (433)
T 3bws_A          139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA---YKATV-DLTGKWS  214 (433)
T ss_dssp             EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---EEEEE-ECSSSSE
T ss_pred             EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---EEEEE-cCCCCCe
Confidence            88888999999999987654321   23577899999999999999999999999999998876   34555 6788899


Q ss_pred             EEEEEcCCCcEEE-EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc---
Q 016982          148 TSVAWHPNNVFLA-TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG---  223 (379)
Q Consensus       148 ~~~~~~p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---  223 (379)
                      .+++|+|++++++ +++.++.|++||+                  .+++.+..+..+ ..+.+++|+|++++|++++   
T Consensus       215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~------------------~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~  275 (433)
T 3bws_A          215 KILLYDPIRDLVYCSNWISEDISVIDR------------------KTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA  275 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEET------------------TTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred             eEEEEcCCCCEEEEEecCCCcEEEEEC------------------CCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence            9999999998775 5557999999997                  556666666653 4589999999999999887   


Q ss_pred             -----CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEE-EE-EeCCCeEEEEecCCCcEEEEEEecccccCCCC
Q 016982          224 -----HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVI-GV-GFDCNPMVFAADETGIWTFIKFLDERKTSSSG  296 (379)
Q Consensus       224 -----~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~-~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  296 (379)
                           .|+.|++||+.+++. ...+ .+...+.+++|+|+++.+ ++ +.++.+.+|+.........   +         
T Consensus       276 ~~~~~~dg~i~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~---~---------  341 (433)
T 3bws_A          276 SNQESGGGRLGIYSMDKEKL-IDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS---I---------  341 (433)
T ss_dssp             CTTCSCCEEEEEEETTTTEE-EEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE---E---------
T ss_pred             CccccCCCeEEEEECCCCcE-Eeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE---e---------
Confidence                 588999999987653 3333 455688999999999754 43 6788999998775321111   1         


Q ss_pred             CccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeec---------------Cc
Q 016982          297 PKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGL---------------DG  361 (379)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~---------------Dg  361 (379)
                                                         .|...+.+++ +++++    ++|++++.               ||
T Consensus       342 -----------------------------------~~~~~~~~~~-~s~dg----~~l~~~~~~~~~~~~~~~~~g~~dg  381 (433)
T 3bws_A          342 -----------------------------------PVFDKPNTIA-LSPDG----KYLYVSCRGPNHPTEGYLKKGLVLG  381 (433)
T ss_dssp             -----------------------------------ECSSSEEEEE-ECTTS----SEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred             -----------------------------------cCCCCCCeEE-EcCCC----CEEEEEecCCCccccccccccccce
Confidence                                               2445677888 66665    77777665               68


Q ss_pred             eEEEEeCCCccccccC
Q 016982          362 KIVTWDLESQEDLLNY  377 (379)
Q Consensus       362 ~v~iW~~~~~~~~~~~  377 (379)
                      .|++||+.+++.++.+
T Consensus       382 ~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          382 KVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCcEEEEe
Confidence            9999999988766543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.7e-30  Score=210.65  Aligned_cols=200  Identities=12%  Similarity=0.089  Sum_probs=149.1

Q ss_pred             CcceeEEEeCCC----CcEEEEEec--------------------CCeEEEEEecCCceEEEEEeccCCCceEEEEEcC-
Q 016982           10 AQCITCHAWSPD----HAMVAFCPN--------------------NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-   64 (379)
Q Consensus        10 ~~~i~~~~~s~~----~~~l~~~~~--------------------dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-   64 (379)
                      ...|.+++|+||    ++.+++++.                    |+.|++|++... .+.+..+.+|...++.++|+| 
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d-G~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED-GGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT-SCEEEEEEECCCSSCEEEEEEE
T ss_pred             ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC-CceeeeeccCCCceeeEEeecc
Confidence            347888999999    778877653                    777888887442 145566667777888888888 


Q ss_pred             --CCCEEEEEeCCCeEEEEeccCCceeeeEEeec-CCCceeEEEECCCCCEE------------EEEeCCCeEEEEEeec
Q 016982           65 --RSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR-LNRAALCVQWSPKENKF------------AVGSGAKTVCICYYEQ  129 (379)
Q Consensus        65 --~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l------------~~~~~d~~v~i~~~~~  129 (379)
                        ++.+|++++.|++|+|||+.+++++..+.... +...+.+++|+|+|.++            ++|+.|+++++||..+
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence              66889999999999999999999777763111 23467788999999876            5677899999999987


Q ss_pred             CCceeEEEEE----eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982          130 ENNWWVSKLI----RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS  205 (379)
Q Consensus       130 ~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
                      +..   ...+    ..+|...+.+..+  ++.++++++.|++|+|||+                  .+++++.++.+|..
T Consensus       270 gk~---l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl------------------~tGk~l~tL~gH~~  326 (356)
T 2w18_A          270 TLS---VGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL------------------LLGQCTALLPPVSD  326 (356)
T ss_dssp             TEE---EEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET------------------TTCSEEEEECCC--
T ss_pred             CEE---EEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC------------------CCCcEEEEecCCCC
Confidence            762   2222    1356555554444  4789999999999999997                  78999999998877


Q ss_pred             ceE-EEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          206 WAF-GVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       206 ~v~-~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                      .+. .++|+|||++|++|+.|++|+|||+
T Consensus       327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            655 5899999999999999999999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.2e-29  Score=220.11  Aligned_cols=280  Identities=17%  Similarity=0.151  Sum_probs=207.9

Q ss_pred             CcceeEEEeCCCCc-EEEEEe----cCC----eEEEEEe--cCCceEEEEEeccCCCceEEEEEcC--------------
Q 016982           10 AQCITCHAWSPDHA-MVAFCP----NNN----EVHIYKL--IQEKWEKLHVLQKHDQIVSGIDWSV--------------   64 (379)
Q Consensus        10 ~~~i~~~~~s~~~~-~l~~~~----~dg----~i~i~~~--~~~~~~~~~~~~~~~~~v~~~~~~~--------------   64 (379)
                      ...+...+|++.|. ++++|+    .+|    .|++||+  .+++......+.+|...+..+++++              
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            34677888988774 566775    467    8999999  7774333356888888888777765              


Q ss_pred             CCCEEEEEeCC------CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC---eEEEEEeecCCceeE
Q 016982           65 RSNRIVTVSHD------RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK---TVCICYYEQENNWWV  135 (379)
Q Consensus        65 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~  135 (379)
                      .+..++.++.+      +.|++||+.++. ..  .+..|...+.+++|+|+|+.|++++.++   .|++||+.+++    
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~--~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~----  214 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF--VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----  214 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSCS-CE--EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCCC-CE--EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc----
Confidence            15567666654      799999998654 22  3356788999999999999999999875   99999998876    


Q ss_pred             EEEEeecCCcCEEEEEEcCCCcEEE-EeeCCCe--EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEE
Q 016982          136 SKLIRKRHDSSVTSVAWHPNNVFLA-TTSTDGK--CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKW  212 (379)
Q Consensus       136 ~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  212 (379)
                      ...+ ..+...+.+++|+|||++|+ +++.++.  |++||+                  .+++. ..+..|...+.+++|
T Consensus       215 ~~~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~------------------~~~~~-~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          215 VRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL------------------ASGQI-RQVTDGRSNNTEPTW  274 (415)
T ss_dssp             EEEE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET------------------TTCCE-EECCCCSSCEEEEEE
T ss_pred             EEEe-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC------------------CCCCE-EeCcCCCCcccceEE
Confidence            2344 57788999999999999888 5655554  889986                  34443 566777888999999


Q ss_pred             CCCCCEEEEEcC-CC--eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE-eC---CCeEEEEecCCCcEEEEE
Q 016982          213 SPSGNTLAYVGH-NS--MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG-FD---CNPMVFAADETGIWTFIK  285 (379)
Q Consensus       213 sp~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~d---~~~~i~~~~~~~~~~~~~  285 (379)
                      +|||++|++++. ++  .|++||+.++..  ..+..+...+.+++|+|+|++|+.+ .+   ..+.+|+...... .   
T Consensus       275 spdg~~l~~~s~~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~---  348 (415)
T 2hqs_A          275 FPDSQNLAFTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---  348 (415)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTSSCC--EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-E---
T ss_pred             CCCCCEEEEEECCCCCcEEEEEECCCCCE--EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-E---
Confidence            999999988775 44  688889887652  4455566788899999999988844 33   3577776654331 1   


Q ss_pred             EecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc---e
Q 016982          286 FLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG---K  362 (379)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg---~  362 (379)
                                                                 .+..|. .+.+++ |++++    ++|++++.|+   .
T Consensus       349 -------------------------------------------~l~~~~-~~~~~~-~spdg----~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          349 -------------------------------------------VLSSTF-LDETPS-LAPNG----TMVIYSSSQGMGSV  379 (415)
T ss_dssp             -------------------------------------------ECCCSS-SCEEEE-ECTTS----SEEEEEEEETTEEE
T ss_pred             -------------------------------------------EecCCC-CcCCeE-EcCCC----CEEEEEEcCCCccE
Confidence                                                       112343 678888 77666    8899888877   8


Q ss_pred             EEEEeCCCc
Q 016982          363 IVTWDLESQ  371 (379)
Q Consensus       363 v~iW~~~~~  371 (379)
                      |++||+..+
T Consensus       380 l~~~d~~g~  388 (415)
T 2hqs_A          380 LNLVSTDGR  388 (415)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEECCCC
Confidence            999998753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=7.2e-28  Score=216.73  Aligned_cols=299  Identities=10%  Similarity=0.018  Sum_probs=223.0

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEe--cCCceEEEEEeccCCCceEEEEEcC----CCCEEEEEe-CCCeEEEEecc
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKL--IQEKWEKLHVLQKHDQIVSGIDWSV----RSNRIVTVS-HDRNSYVWNQE   84 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~-~d~~i~vw~~~   84 (379)
                      .+.+++|+|||++|++++.|+.|.+||+  .+.  +.+..+.. ...+..++|+|    +|++|++++ .+++|.+||..
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            3889999999999999999999999999  665  67777774 45679999999    999998887 48999999999


Q ss_pred             CCceeeeEEeec--------C-CCceeEEEECCCCCE-EEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           85 GSEWVPTLVILR--------L-NRAALCVQWSPKENK-FAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        85 ~~~~~~~~~~~~--------~-~~~v~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      +++.+..+...+        | ...+..+.++|++.. +++...++.|.+||+....... ...+  .+...+.++.|+|
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-~~~i--~~~~~~~~~~~sp  333 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT-VTSI--GAAPFLHDGGWDS  333 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE-EEEE--ECCSSCCCEEECT
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce-eEEe--ccCcCccCceECC
Confidence            998777665322        2 237889999997664 5556678999999998765322 1222  4566788899999


Q ss_pred             CCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEeec----CCcceEEEEECCC-CCEEEEEc-CCCe
Q 016982          155 NNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL----SFSWAFGVKWSPS-GNTLAYVG-HNSM  227 (379)
Q Consensus       155 ~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~-~~~l~~~~-~d~~  227 (379)
                      ++++|++++ .+++|.+||+                  .+++++..+..    |.+....+ ++|+ +..+++++ .|++
T Consensus       334 dg~~l~va~~~~~~v~v~D~------------------~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~  394 (543)
T 1nir_A          334 SHRYFMTAANNSNKVAVIDS------------------KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS  394 (543)
T ss_dssp             TSCEEEEEEGGGTEEEEEET------------------TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE
T ss_pred             CCCEEEEEecCCCeEEEEEC------------------CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce
Confidence            999776554 5889999997                  66777777764    44333333 4776 66666765 6899


Q ss_pred             EEEEECCCC------CceeeeeeeecCCeeeEEEecCCcEEEEEe--------CCCeEEEEecCCCcE-EEEEEeccccc
Q 016982          228 IYFVDDVGP------SPLAQNVAFRDLPLRDVLFVSEKMVIGVGF--------DCNPMVFAADETGIW-TFIKFLDERKT  292 (379)
Q Consensus       228 i~v~d~~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--------d~~~~i~~~~~~~~~-~~~~~~~~~~~  292 (379)
                      |.+||+.+.      .++++++..|...+..+.|+|+|++|.++.        ++.|.+|+....... +.+..- .   
T Consensus       395 V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~-~---  470 (543)
T 1nir_A          395 ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA-E---  470 (543)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH-H---
T ss_pred             EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeech-h---
Confidence            999998872      346788888888889999999999999765        679999998764421 211000 0   


Q ss_pred             CCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEe-----ecCceEEEEe
Q 016982          293 SSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS-----GLDGKIVTWD  367 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~-----~~Dg~v~iW~  367 (379)
                                       .                 .-+..|...+..++ |+++|    +.|+.+     +.|+.|.|||
T Consensus       471 -----------------~-----------------~~~~~~~~~~~~~~-~~~~g----~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          471 -----------------W-----------------ADLGEGAKRVVQPE-YNKRG----DEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             -----------------H-----------------HCCCSSCCEEEEEE-ECSSS----SEEEEEEECCTTSCCEEEEEE
T ss_pred             -----------------h-----------------cccCCCCCceEecc-CCCCC----CEEEEEeecCCCCCCeEEEEE
Confidence                             0                 00134567899999 88777    666644     2489999999


Q ss_pred             CCCccccccCC
Q 016982          368 LESQEDLLNYH  378 (379)
Q Consensus       368 ~~~~~~~~~~~  378 (379)
                      .+++++++.++
T Consensus       512 ~~t~~~~~~i~  522 (543)
T 1nir_A          512 DKTLKLKAVVK  522 (543)
T ss_dssp             TTTTEEEEEEC
T ss_pred             CCCceEEEeec
Confidence            99998887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.6e-28  Score=213.27  Aligned_cols=238  Identities=14%  Similarity=0.100  Sum_probs=179.7

Q ss_pred             eeccCcceeEEEeCC--------------CCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCC
Q 016982            6 VHQFAQCITCHAWSP--------------DHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR   65 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~--------------~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   65 (379)
                      +.+|...+..+++++              .+..+++++.+      +.|++||+.+.   ....+..|...+.+++|+|+
T Consensus       113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTT
T ss_pred             EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCC
Confidence            455666666666654              25667666654      79999999864   34566778899999999999


Q ss_pred             CCEEEEEeCCC---eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEE-EEeCCCe--EEEEEeecCCceeEEEEE
Q 016982           66 SNRIVTVSHDR---NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFA-VGSGAKT--VCICYYEQENNWWVSKLI  139 (379)
Q Consensus        66 ~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--v~i~~~~~~~~~~~~~~~  139 (379)
                      |++|++++.++   .|++||+.+++..   .+..+...+.+++|+|+|+.|+ +++.++.  |++||+.++.    ...+
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~---~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~----~~~l  262 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR---QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ----IRQV  262 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE---EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----EEEC
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE---EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC----EEeC
Confidence            99999999875   8999999998753   2356778899999999999888 5555554  8888887765    2444


Q ss_pred             eecCCcCEEEEEEcCCCcEEEEeeC-CC--eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC
Q 016982          140 RKRHDSSVTSVAWHPNNVFLATTST-DG--KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG  216 (379)
Q Consensus       140 ~~~~~~~v~~~~~~p~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~  216 (379)
                       ..|...+.+++|+|+|++|++++. ++  .|.+||+                  ..++ ...+..+...+.+++|+|+|
T Consensus       263 -~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~------------------~~~~-~~~l~~~~~~~~~~~~spdG  322 (415)
T 2hqs_A          263 -TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI------------------NGGA-PQRITWEGSQNQDADVSSDG  322 (415)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET------------------TSSC-CEECCCSSSEEEEEEECTTS
T ss_pred             -cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC------------------CCCC-EEEEecCCCcccCeEECCCC
Confidence             678889999999999999988876 45  5777775                  3333 34455566788999999999


Q ss_pred             CEEEEEcCC---CeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCC---CeEEEEec
Q 016982          217 NTLAYVGHN---SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDC---NPMVFAAD  276 (379)
Q Consensus       217 ~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~---~~~i~~~~  276 (379)
                      ++|++++.+   ..|++||+.++..  ..+..+. .+.+++|+|+|++|+ ++.++   .+.+|+.+
T Consensus       323 ~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          323 KFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             SEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            999988754   6899999988653  3444443 789999999999877 44444   46666554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=5.4e-28  Score=227.59  Aligned_cols=282  Identities=11%  Similarity=0.086  Sum_probs=203.2

Q ss_pred             CcceeEEEeCCCCcEEEEEec-CC-----eEEEEEecCCceEEEEEeccCC----------------------CceEEEE
Q 016982           10 AQCITCHAWSPDHAMVAFCPN-NN-----EVHIYKLIQEKWEKLHVLQKHD----------------------QIVSGID   61 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~-dg-----~i~i~~~~~~~~~~~~~~~~~~----------------------~~v~~~~   61 (379)
                      ...|.+++|||||++|++++. |+     .|++||+.+++...+.....+.                      ..+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457999999999999999988 88     8999999987433333322222                      3478999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeccCC---ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEE
Q 016982           62 WSVRSNRIVTVSHDRNSYVWNQEGS---EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKL  138 (379)
Q Consensus        62 ~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~  138 (379)
                      |+|||++|++++. +.|.+||+.++   +...   +..+...+..++|+|||++|++++ ++.|++||+.++.   ..+.
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~---l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~---~~~~  187 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ---LTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR---QMQL  187 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCB---CCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE---EEEC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEE---cccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC---EEEe
Confidence            9999999999886 89999999987   5322   245678899999999999999988 4689999988765   2222


Q ss_pred             EeecCCcC----------------EEEEEEcCCCcEEEEeeCCC---------------------------------eEE
Q 016982          139 IRKRHDSS----------------VTSVAWHPNNVFLATTSTDG---------------------------------KCR  169 (379)
Q Consensus       139 ~~~~~~~~----------------v~~~~~~p~~~~l~~~~~d~---------------------------------~i~  169 (379)
                      . ..+...                +..++|+|||++|++++.|+                                 .|.
T Consensus       188 ~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          188 T-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             C-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             c-cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            2 222222                47799999999999987665                                 677


Q ss_pred             EEeccccccccccccCCCccCCcc-cceEEEee--cCCcceEEEEECCCCCEEEEEcC-----CCeEEEEECCCCCceee
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKF-GEQILQLD--LSFSWAFGVKWSPSGNTLAYVGH-----NSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~-----d~~i~v~d~~~~~~~~~  241 (379)
                      +||+                  .+ ++......  .+...+..++| |||++|++++.     +..|++||+.+++. ..
T Consensus       267 ~~d~------------------~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~-~~  326 (741)
T 2ecf_A          267 VISP------------------AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ-RV  326 (741)
T ss_dssp             EECS------------------STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE-EE
T ss_pred             EEEC------------------CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce-EE
Confidence            7775                  33 33322221  36678999999 99999987653     57899999988763 34


Q ss_pred             eeeeecC----CeeeEEEecCCcEEEE-EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccc
Q 016982          242 NVAFRDL----PLRDVLFVSEKMVIGV-GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKY  316 (379)
Q Consensus       242 ~~~~~~~----~i~~~~~s~~~~~l~~-~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (379)
                      .+..+..    .+..++|+|||+++++ +.++...+|..+..+..   .                               
T Consensus       327 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~---~-------------------------------  372 (741)
T 2ecf_A          327 LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKA---A-------------------------------  372 (741)
T ss_dssp             EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCE---E-------------------------------
T ss_pred             EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCe---e-------------------------------
Confidence            4444432    4568999999997774 45667888877643321   1                               


Q ss_pred             cCcccccccccccccccccceeeeeeecccCCcccceE-EEeecCc--eEEEEeCCC
Q 016982          317 GVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRF-TTSGLDG--KIVTWDLES  370 (379)
Q Consensus       317 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l-~t~~~Dg--~v~iW~~~~  370 (379)
                                  .+..|...|..+..|++++    +.| ++++.|+  .+++|++..
T Consensus       373 ------------~l~~~~~~v~~~~~~s~dg----~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          373 ------------ALTHGNWSVDELLAVDEKA----GLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             ------------ESCCSSSCEEEEEEEETTT----TEEEEEECSSCTTCBEEEEEET
T ss_pred             ------------eeeecceEEEeEeEEeCCC----CEEEEEEeCCCCceEEEEEEEc
Confidence                        1235666777774477776    655 5566666  899999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=6.4e-27  Score=210.54  Aligned_cols=280  Identities=10%  Similarity=0.102  Sum_probs=208.8

Q ss_pred             EeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec--cCCceeeeEEe
Q 016982           17 AWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ--EGSEWVPTLVI   94 (379)
Q Consensus        17 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~   94 (379)
                      +|+|++.++++++.++.|.+||..++  +.+.++..+.. +..++|+|+|++|++++.|+.|.+||+  .+++.+..+. 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-  219 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-  219 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC--CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc--eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence            48899999999999999999999887  56777774333 889999999999999999999999999  7777555443 


Q ss_pred             ecCCCceeEEEECC----CCCEEEEEeC-CCeEEEEEeecCCceeEEEEEee-c--------C-CcCEEEEEEcCCCc-E
Q 016982           95 LRLNRAALCVQWSP----KENKFAVGSG-AKTVCICYYEQENNWWVSKLIRK-R--------H-DSSVTSVAWHPNNV-F  158 (379)
Q Consensus        95 ~~~~~~v~~~~~~~----~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~-~--------~-~~~v~~~~~~p~~~-~  158 (379)
                        +...+..++|+|    +|+++++++. +++|.+||..+.+   +.+.+.. +        | ...+..+.++|++. +
T Consensus       220 --~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~---~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          220 --IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE---PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             --CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC---EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             --cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc---cceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence              456789999999    9999999885 8999999988776   3444411 1        2 23789999999774 5


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceE--EEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCC
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI--LQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVG  235 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~  235 (379)
                      +++...++.|.+||+.                  ..+.+  ..+. +...+..+.|+|+|++|+++ ..+++|.+||..+
T Consensus       295 ~vs~~~~g~i~vvd~~------------------~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          295 IVNVKETGKVLLVNYK------------------DIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             EEEETTTTEEEEEECT------------------TSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEECCCCeEEEEEec------------------CCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence            5667778999999972                  22222  2333 35567889999999987655 4688999999998


Q ss_pred             CCceeeeeee----ecCCeeeEEEecC-CcEEEEE--eCCCeEEEEecCCC----cEEEEEEecccccCCCCCccCCCcc
Q 016982          236 PSPLAQNVAF----RDLPLRDVLFVSE-KMVIGVG--FDCNPMVFAADETG----IWTFIKFLDERKTSSSGPKYGSQFS  304 (379)
Q Consensus       236 ~~~~~~~~~~----~~~~i~~~~~s~~-~~~l~~~--~d~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
                      ++ +...+..    |......+ ++|+ |.+++++  .++.|.+|+.+..+    .|++.+.+                 
T Consensus       356 g~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l-----------------  416 (543)
T 1nir_A          356 RR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL-----------------  416 (543)
T ss_dssp             TE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE-----------------
T ss_pred             Ce-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE-----------------
Confidence            75 4455553    33222222 4676 6666665  47899999987632    15554422                 


Q ss_pred             cccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee-------cCceEEEEeCCCcccc
Q 016982          305 EAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-------LDGKIVTWDLESQEDL  374 (379)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-------~Dg~v~iW~~~~~~~~  374 (379)
                                                .+|.+.+..|+ ++|++    ++|++++       .|++|.+||+.+++..
T Consensus       417 --------------------------~~~g~~~~~v~-~~pdg----~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          417 --------------------------QGQGGGSLFIK-THPKS----SHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             --------------------------ECSCSCCCCEE-CCTTC----CEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             --------------------------EcCCCCceEEE-cCCCC----CcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence                                      46777788888 66665    8999987       3789999999988765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=3.1e-25  Score=189.30  Aligned_cols=276  Identities=12%  Similarity=0.071  Sum_probs=186.2

Q ss_pred             EEEEEecCCeEEEEEec-CCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-CeEEEEecc--CCceeeeEEeecCCC
Q 016982           24 MVAFCPNNNEVHIYKLI-QEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-RNSYVWNQE--GSEWVPTLVILRLNR   99 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~vw~~~--~~~~~~~~~~~~~~~   99 (379)
                      ++++++.++.|++|++. +++.+.+..+ .+...+.+++|+|++++|++++.+ +.|.+|++.  +++........ ...
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPG   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc-cCC
Confidence            34444779999999996 3333444444 366788999999999999888876 899999998  55543333322 234


Q ss_pred             ceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccc
Q 016982          100 AALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKG  177 (379)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~  177 (379)
                      .+..++|+|+++++++++. ++.|.+||+..+........+  .....+.+++|+|+++++++++ .++.|.+||+.   
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~---  159 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--EGLDGCHSANISPDNRTLWVPALKQDRICLFTVS---  159 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE--CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC---
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc--cCCCCceEEEECCCCCEEEEecCCCCEEEEEEec---
Confidence            8899999999998877765 889999999632211123333  3345688999999999888777 89999999972   


Q ss_pred             cccccccCCCccCCcccceE--E--Eeec-CCcceEEEEECCCCCEEEEE-cCCCeEEEEECCC--CCce-eeeeee---
Q 016982          178 VDIKEKKEGTSSDTKFGEQI--L--QLDL-SFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVG--PSPL-AQNVAF---  245 (379)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~--~--~~~~-~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~--~~~~-~~~~~~---  245 (379)
                                    ..++..  .  .+.. ....+..++|+|++++|+++ ..++.|.+||+..  +... ......   
T Consensus       160 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~  225 (343)
T 1ri6_A          160 --------------DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE  225 (343)
T ss_dssp             --------------TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT
T ss_pred             --------------CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc
Confidence                          112221  1  2222 23467889999999977655 4889999999854  2211 112211   


Q ss_pred             e---cCCeeeEEEecCCcEEE-EE-eCCCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCc
Q 016982          246 R---DLPLRDVLFVSEKMVIG-VG-FDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVG  319 (379)
Q Consensus       246 ~---~~~i~~~~~s~~~~~l~-~~-~d~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
                      .   ...+..++|+|+|++|+ +. .++.+.+|+.+. .+........                                
T Consensus       226 ~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~--------------------------------  273 (343)
T 1ri6_A          226 NFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ--------------------------------  273 (343)
T ss_dssp             TCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE--------------------------------
T ss_pred             cccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee--------------------------------
Confidence            0   12456799999998776 33 577899999874 2223333211                                


Q ss_pred             ccccccccccccccccceeeeeeecccCCcccceEEEee-cCceEEEEeCC
Q 016982          320 NDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTWDLE  369 (379)
Q Consensus       320 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~v~iW~~~  369 (379)
                                 ..+.. +.+++ +++++    ++|++++ .|+.|.+|++.
T Consensus       274 -----------~~~~~-~~~~~-~s~dg----~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          274 -----------PTETQ-PRGFN-VDHSG----KYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             -----------ECSSS-CCCEE-ECTTS----SEEEEECTTTCEEEEEEEE
T ss_pred             -----------cCCCc-cceEE-ECCCC----CEEEEecCCCCeEEEEEEc
Confidence                       12222 77888 77666    7677666 78999999654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=1.8e-27  Score=223.50  Aligned_cols=226  Identities=10%  Similarity=0.064  Sum_probs=164.0

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCC---ceEEEEEcCCCCEEEEEeCC---------CeE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ---IVSGIDWSVRSNRIVTVSHD---------RNS   78 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i   78 (379)
                      ..+.+++|+|||+++++ +.||.|++||+.++  +....+..|..   .|.+++|||||++|++++.+         +.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            45788999999997766 68999999999987  44555666654   48999999999999998764         778


Q ss_pred             EEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-------------
Q 016982           79 YVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-------------  145 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-------------  145 (379)
                      .+||+.+++.........+...+..++|+|||+.|++++. +.|++||+.++..   .+.. ..+..             
T Consensus        94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~---~~~~-~~~~~~~~~~g~~~~v~~  168 (723)
T 1xfd_A           94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA---IRVV-STGKEGVIYNGLSDWLYE  168 (723)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC---EEEE-CCCBTTTEEEEECCHHHH
T ss_pred             EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce---EEEe-cCCCCCceECcccceeEE
Confidence            8999998874222211223445889999999999999986 7899999988763   3333 33222             


Q ss_pred             -----CEEEEEEcCCCcEEEEeeCCC----------------------------------eEEEEeccccccccccccCC
Q 016982          146 -----SVTSVAWHPNNVFLATTSTDG----------------------------------KCRVFSTFIKGVDIKEKKEG  186 (379)
Q Consensus       146 -----~v~~~~~~p~~~~l~~~~~d~----------------------------------~i~v~d~~~~~~~~~~~~~~  186 (379)
                           .+.+++|+|||++|++++.++                                  .|++||+             
T Consensus       169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~-------------  235 (723)
T 1xfd_A          169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-------------  235 (723)
T ss_dssp             HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-------------
T ss_pred             EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC-------------
Confidence                 237899999999999887543                                  5677765             


Q ss_pred             CccCCcccceEEEeecC------CcceEEEEECCCCCEEEEEc----CCCeEEEEECCCCCceeeeeee-ecCCe----e
Q 016982          187 TSSDTKFGEQILQLDLS------FSWAFGVKWSPSGNTLAYVG----HNSMIYFVDDVGPSPLAQNVAF-RDLPL----R  251 (379)
Q Consensus       187 ~~~~~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~-~~~~i----~  251 (379)
                           .+++....+..+      ...+..++|+|||++|++.+    .+..|++||+.+++. ...+.. +...+    .
T Consensus       236 -----~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~  309 (723)
T 1xfd_A          236 -----NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNE  309 (723)
T ss_dssp             -----SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCC
T ss_pred             -----CCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEeccCCEEeccCC
Confidence                 333333444332      56789999999999887664    236799999988763 233333 23333    3


Q ss_pred             eEEEecCCcEEE
Q 016982          252 DVLFVSEKMVIG  263 (379)
Q Consensus       252 ~~~~s~~~~~l~  263 (379)
                      .++|+|||+.|+
T Consensus       310 ~~~~spdg~~l~  321 (723)
T 1xfd_A          310 EPVFSKDGRKFF  321 (723)
T ss_dssp             CCEECTTSCSEE
T ss_pred             CceEcCCCCeEE
Confidence            899999999665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=2.3e-26  Score=192.06  Aligned_cols=258  Identities=11%  Similarity=0.068  Sum_probs=186.9

Q ss_pred             EecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC-CceeeeEEeecC-CCceeEEE
Q 016982           28 CPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG-SEWVPTLVILRL-NRAALCVQ  105 (379)
Q Consensus        28 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~-~~~v~~~~  105 (379)
                      ++.++.|++||+.++  +. ..+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.....  ..+ ...+.+++
T Consensus        18 ~~~~~~i~~~d~~~~--~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~   91 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTR--KM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD--TGFATICNNDHG   91 (297)
T ss_dssp             CCCCEEEEEEETTTT--EE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC--CTTCCCBCSCCE
T ss_pred             CCcceeEEEEeCCCC--ce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec--cccccccccceE
Confidence            456899999999987  33 34556888999999999999999987 78999999998 7644332  233 46789999


Q ss_pred             ECCCCCEEEEEe--CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeCCCeEEEEecccccccccc
Q 016982          106 WSPKENKFAVGS--GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTSTDGKCRVFSTFIKGVDIKE  182 (379)
Q Consensus       106 ~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~  182 (379)
                      |+|++++|++++  .++...+|.++....  ....+  .+...+..++|+|++++|+ ++..++.+++|++.        
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~--------  159 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGG--TPRLM--TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD--------  159 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCC--CCEEC--CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEE--------
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCC--ceEEe--ecCCCccceEECCCCCEEEEEECCCCceEEEEEE--------
Confidence            999999999998  445677777764332  12333  2334589999999999877 67789999999862        


Q ss_pred             ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcE
Q 016982          183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMV  261 (379)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  261 (379)
                               ........+..+...+.+++|+|+|++|++++ .++.+++|++.........+..+...+..++|+|+|++
T Consensus       160 ---------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  230 (297)
T 2ojh_A          160 ---------IDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDK  230 (297)
T ss_dssp             ---------TTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSE
T ss_pred             ---------CCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCE
Confidence                     12233455666777899999999999887765 58899999876333344666667778899999999998


Q ss_pred             EE-EEeC-----------CCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccc
Q 016982          262 IG-VGFD-----------CNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTR  329 (379)
Q Consensus       262 l~-~~~d-----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (379)
                      |+ ++.+           ..+.+|+........+.                                            .
T Consensus       231 l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~--------------------------------------------~  266 (297)
T 2ojh_A          231 VVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF--------------------------------------------D  266 (297)
T ss_dssp             EEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE--------------------------------------------E
T ss_pred             EEEEEcCCCCCcccccCceEEEEEecCCCCceeee--------------------------------------------c
Confidence            87 4443           34667765543322211                                            1


Q ss_pred             ccccccceeeeeeecccCCcccceEEEeecCc
Q 016982          330 GGTHVNCINCIVPLREAGSSRITRFTTSGLDG  361 (379)
Q Consensus       330 ~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg  361 (379)
                      +.+|...+.+++ |++++    ++|++++.|.
T Consensus       267 ~~~~~~~~~~~~-~spdg----~~l~~~~~~~  293 (297)
T 2ojh_A          267 LFGGQGTMNSPN-WSPDG----DEFAYVRYFP  293 (297)
T ss_dssp             EEESTTTSCSCC-BCTTS----SEEEEEEECC
T ss_pred             cCCCCcccccce-ECCCC----CEEEEEEecc
Confidence            135777888888 77666    8888887663

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=7.7e-25  Score=186.89  Aligned_cols=262  Identities=12%  Similarity=0.061  Sum_probs=183.9

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecC-CeEEEEEec--CCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CCeEEEEe
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNN-NEVHIYKLI--QEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DRNSYVWN   82 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~i~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~   82 (379)
                      ..+...+.+++|+|+|++|++++.+ +.|.+|++.  +++...+..+..+. .+..++|+|++++|++++. ++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            4567789999999999999888876 999999998  55556666666544 7889999999998876664 78899999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeec-CCceeEEE--EEeecCCcCEEEEEEcCCCcE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQ-ENNWWVSK--LIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~-~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      +..+..............+.+++|+|+++.+++++ .++.|.+||+.. +.. ....  .........+..++|+|++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL-VAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE-EEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce-eeecccccccCCCCCcceEEECCCCCE
Confidence            95433222222233455689999999999888887 799999999987 431 1111  221234457889999999987


Q ss_pred             EEEee-CCCeEEEEeccccccccccccCCCccCCcccc--eEEEe---ecC---CcceEEEEECCCCCEEE-EEcCCCeE
Q 016982          159 LATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQL---DLS---FSWAFGVKWSPSGNTLA-YVGHNSMI  228 (379)
Q Consensus       159 l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~---~~~v~~~~~sp~~~~l~-~~~~d~~i  228 (379)
                      +++++ .++.+.+|++..                ..++  ....+   ...   ...+..++|+|+|++|+ +...++.|
T Consensus       192 l~~~~~~~~~i~~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i  255 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKD----------------PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI  255 (343)
T ss_dssp             EEEEETTTTEEEEEESSC----------------TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEeCCCCEEEEEEecC----------------CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEE
Confidence            75554 789999999721                0111  11111   111   23567899999998877 45578999


Q ss_pred             EEEECCC--CC-ceeeeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEecC-CCcEEEEEEe
Q 016982          229 YFVDDVG--PS-PLAQNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAADE-TGIWTFIKFL  287 (379)
Q Consensus       229 ~v~d~~~--~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~-~~~~~~~~~~  287 (379)
                      .+||+..  +. ..+..+..+ ..+..++|+|+|++|+++  .++.+.+|..+. .+.+.....+
T Consensus       256 ~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~  319 (343)
T 1ri6_A          256 TVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY  319 (343)
T ss_dssp             EEEEECTTSCCEEEEEEEECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEcCCCCceEEeeeecCC-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence            9999873  22 222333333 348899999999977744  468999998764 3445554433

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=4.3e-26  Score=194.21  Aligned_cols=274  Identities=11%  Similarity=0.018  Sum_probs=196.0

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCC--ceEEEEEcCCCCEEE-EEeCCCeEEEEeccCCceeeeEEeec---
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ--IVSGIDWSVRSNRIV-TVSHDRNSYVWNQEGSEWVPTLVILR---   96 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~---   96 (379)
                      ++|++++.++.|++||+.++  +.+..+.....  .+..++|+|++++++ ++..++.|.+||+.+++....+....   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~   79 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             cEEEEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence            57889999999999999887  55555543221  478999999998764 55567899999999988665554321   


Q ss_pred             CCCceeEEEECCCCCEEEEEe------------CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           97 LNRAALCVQWSPKENKFAVGS------------GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~------------~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      +...+..++|+|+|++++++.            .++.|.+||+.+.+   ....+ . ....+.+++|+|++++|+++  
T Consensus        80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~-~-~~~~~~~~~~s~dg~~l~~~--  152 (337)
T 1pby_B           80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAF-E-APRQITMLAWARDGSKLYGL--  152 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEE-E-CCSSCCCEEECTTSSCEEEE--
T ss_pred             ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc---EEEEE-e-CCCCcceeEECCCCCEEEEe--
Confidence            122678899999999998886            57999999997765   33444 2 34557889999999988877  


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-C-----------------
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-S-----------------  226 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~-----------------  226 (379)
                      ++.|.+||+                  .+++.+..+..+.. ...+.|+|+++.|+..+.. +                 
T Consensus       153 ~~~i~~~d~------------------~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  213 (337)
T 1pby_B          153 GRDLHVMDP------------------EAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD  213 (337)
T ss_dssp             SSSEEEEET------------------TTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred             CCeEEEEEC------------------CCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccc
Confidence            688999997                  45565555544331 1123789998876654432 2                 


Q ss_pred             ------eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccC
Q 016982          227 ------MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYG  300 (379)
Q Consensus       227 ------~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (379)
                            .|.+||+.+++.....+..+...+.+++|+|+|++++++ ++.+.+|+.....   ....+             
T Consensus       214 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~---~~~~~-------------  276 (337)
T 1pby_B          214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNA---SIKRV-------------  276 (337)
T ss_dssp             GGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTE---EEEEE-------------
T ss_pred             ccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCc---Cccee-------------
Confidence                  468999988764333344455678899999999998877 7889999876432   11111             


Q ss_pred             CCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                                                     .....+.+++ +++++    ++|++++.|+.|++||+.+++.++.+
T Consensus       277 -------------------------------~~~~~~~~~~-~s~dg----~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          277 -------------------------------PLPHSYYSVN-VSTDG----STVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             -------------------------------ECSSCCCEEE-ECTTS----CEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             -------------------------------cCCCceeeEE-ECCCC----CEEEEEcCCCcEEEEECcCCcEEEEE
Confidence                                           0112466788 77666    78888899999999999998876654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=2.5e-26  Score=191.81  Aligned_cols=234  Identities=13%  Similarity=0.134  Sum_probs=177.7

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecC-CceEEEEEeccC-CCceEEEEEcCCCCEEEEEe--CCCeEEE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQ-EKWEKLHVLQKH-DQIVSGIDWSVRSNRIVTVS--HDRNSYV   80 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~v   80 (379)
                      .+..|...|.+++|+|+|++|++++ ++.|++||+.+ +  +.......+ ...+.+++|+|++++|++++  .++...|
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence            4567889999999999999999986 78999999988 6  344444455 36789999999999999988  3344455


Q ss_pred             E--eccCCceeeeEEeecCCCceeEEEECCCCCEEE-EEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           81 W--NQEGSEWVPTLVILRLNRAALCVQWSPKENKFA-VGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        81 w--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      |  ++.++..   .. ......+..++|+|+++.|+ ++..++.+++|+++....  ....+ ..+...+.+++|+|+++
T Consensus       113 ~~~~~~~~~~---~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~s~dg~  185 (297)
T 2ojh_A          113 YLLPSTGGTP---RL-MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRL-THGEGRNDGPDYSPDGR  185 (297)
T ss_dssp             EEEETTCCCC---EE-CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CEEEC-CCSSSCEEEEEECTTSS
T ss_pred             EEEECCCCce---EE-eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC--cceEc-ccCCCccccceECCCCC
Confidence            5  5455542   12 22334588999999999887 677899999999875432  12333 56778899999999999


Q ss_pred             EEEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-----------
Q 016982          158 FLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-----------  225 (379)
Q Consensus       158 ~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----------  225 (379)
                      +|++++ .++.+++|++.                 ..+..+..+..+...+..++|+|+|++|++++.+           
T Consensus       186 ~l~~~~~~~~~~~i~~~~-----------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  248 (297)
T 2ojh_A          186 WIYFNSSRTGQMQIWRVR-----------------VDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD  248 (297)
T ss_dssp             EEEEEECTTSSCEEEEEE-----------------TTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred             EEEEEecCCCCccEEEEC-----------------CCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence            888766 58899999872                 2345566677777889999999999999888765           


Q ss_pred             CeEEEEECCCCCce-eeeeeeecCCeeeEEEecCCcEEEEE
Q 016982          226 SMIYFVDDVGPSPL-AQNVAFRDLPLRDVLFVSEKMVIGVG  265 (379)
Q Consensus       226 ~~i~v~d~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~  265 (379)
                      +.|++||+.+++.. +..+..|...+..++|+|+|++|+.+
T Consensus       249 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  289 (297)
T 2ojh_A          249 VRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYV  289 (297)
T ss_dssp             EEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEE
T ss_pred             eEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEE
Confidence            57999999876532 23344677889999999999988743

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=2.2e-24  Score=183.25  Aligned_cols=234  Identities=11%  Similarity=0.068  Sum_probs=162.9

Q ss_pred             EEeCCCCcE-EEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CCeEEEEeccCCce-eeeE
Q 016982           16 HAWSPDHAM-VAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DRNSYVWNQEGSEW-VPTL   92 (379)
Q Consensus        16 ~~~s~~~~~-l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~-~~~~   92 (379)
                      ..|.+++++ +++++.++.|.+||..++  +....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~   79 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI   79 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence            345665554 677778999999999987  4455555556666 9999999997766665 88999999998875 3333


Q ss_pred             EeecCCCceeEEEECCCCCEEEEEeCCC---eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE-eeCCCe-
Q 016982           93 VILRLNRAALCVQWSPKENKFAVGSGAK---TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT-TSTDGK-  167 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~d~~-  167 (379)
                        ..+..+..+++|+|++++++++..++   .|.+||+.+++   ....+  .......+++|+|+++++++ ...++. 
T Consensus        80 --~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~  152 (331)
T 3u4y_A           80 --QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---FISTI--PIPYDAVGIAISPNGNGLILIDRSSANT  152 (331)
T ss_dssp             --EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE---EEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred             --ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC---eEEEE--ECCCCccceEECCCCCEEEEEecCCCce
Confidence              33445555599999999999655553   89999998776   34444  33455689999999975554 455678 


Q ss_pred             EEEEeccccccccccccCCCccCCcccce----EEEeecCCcceEEEEECCCCCEEEE-EcCCCeEEEEECCCCCce--e
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQ----ILQLDLSFSWAFGVKWSPSGNTLAY-VGHNSMIYFVDDVGPSPL--A  240 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~v~d~~~~~~~--~  240 (379)
                      +.+|++.                 ..+..    ...+ .....+..++|+|+|+++++ +..++.|++||+.+++..  +
T Consensus       153 i~~~~~~-----------------~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~  214 (331)
T 3u4y_A          153 VRRFKID-----------------ADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL  214 (331)
T ss_dssp             EEEEEEC-----------------TTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred             EEEEEEC-----------------CCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee
Confidence            9999973                 11111    1122 23445789999999996654 457899999999877641  3


Q ss_pred             eeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEecCC
Q 016982          241 QNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAADET  278 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~~  278 (379)
                      ..+. ....+..++|+|+|++++.+  .++.+.+|+....
T Consensus       215 ~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          215 NAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             EEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             eecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            4444 34667899999999976643  3556778776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=1e-25  Score=210.95  Aligned_cols=281  Identities=12%  Similarity=0.114  Sum_probs=197.4

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC-----
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG-----   85 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-----   85 (379)
                      ..|.+++|||| +.++++ .++.|++||+.++  +. ..+..+...+.+++|+|||++|+++ .++.|++|++.+     
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~--~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR--KV-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT--EE-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC--ce-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccC
Confidence            56999999999 666665 4599999999887  33 3344566778999999999999985 679999999998     


Q ss_pred             CceeeeEEeecCCCc--------------eeEEEECCCCCEEEEEe---------------------------------C
Q 016982           86 SEWVPTLVILRLNRA--------------ALCVQWSPKENKFAVGS---------------------------------G  118 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~  118 (379)
                      ++.....  ..+...              +.++.|+|||++|++++                                 .
T Consensus       156 g~~~~~~--~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~  233 (706)
T 2z3z_A          156 SRAIAVT--IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH  233 (706)
T ss_dssp             CCCEESC--SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred             CCcEEec--cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence            7643322  122222              58999999999999987                                 3


Q ss_pred             CCeEEEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEEEeeCCC-----eEEEEeccccccccccccCCCccCCc
Q 016982          119 AKTVCICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLATTSTDG-----KCRVFSTFIKGVDIKEKKEGTSSDTK  192 (379)
Q Consensus       119 d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~  192 (379)
                      +..|++||+.++..   ..... ..+...+.+++|+|||++|++++.++     .|++||+                  .
T Consensus       234 ~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~------------------~  292 (706)
T 2z3z_A          234 HVTVGIYHLATGKT---VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA------------------E  292 (706)
T ss_dssp             EEEEEEEETTTTEE---EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET------------------T
T ss_pred             eeEEEEEECCCCce---EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC------------------C
Confidence            46788999877652   22211 24667799999999999999887765     8999996                  3


Q ss_pred             ccceEEEee--cCCc---ceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeee-EEEecCCcEEE-
Q 016982          193 FGEQILQLD--LSFS---WAFGVKWSP--SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRD-VLFVSEKMVIG-  263 (379)
Q Consensus       193 ~~~~~~~~~--~~~~---~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~-  263 (379)
                      +++....+.  .+..   .+..++|+|  +|+++++++.++.+++|++.........+..+...+.. ++|+|+|+.|+ 
T Consensus       293 ~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~  372 (706)
T 2z3z_A          293 TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYF  372 (706)
T ss_dssp             TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEE
T ss_pred             CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEE
Confidence            442222221  1222   246789999  99999999999988998876333344666666777776 79999998776 


Q ss_pred             EEeCC---CeEEEEecCC-CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceee
Q 016982          264 VGFDC---NPMVFAADET-GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINC  339 (379)
Q Consensus       264 ~~~d~---~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  339 (379)
                      ++.+.   ...+|..+.. +...                                              . ..|...+.+
T Consensus       373 ~~~~~~~~~~~l~~~d~~~~~~~----------------------------------------------~-l~~~~~~~~  405 (706)
T 2z3z_A          373 ESTEASPLERHFYCIDIKGGKTK----------------------------------------------D-LTPESGMHR  405 (706)
T ss_dssp             EESSSCTTCBEEEEEETTCCCCE----------------------------------------------E-SCCSSSEEE
T ss_pred             EecCCCCceEEEEEEEcCCCCce----------------------------------------------e-ccCCCceEE
Confidence            44443   2566654421 1111                                              0 125556788


Q ss_pred             eeeecccCCcccceEEEeecC----ceEEEEeCCCcc
Q 016982          340 IVPLREAGSSRITRFTTSGLD----GKIVTWDLESQE  372 (379)
Q Consensus       340 ~~~~~~~~~~~~~~l~t~~~D----g~v~iW~~~~~~  372 (379)
                      ++ |++++    ++|+..+.+    +.|++||+.+++
T Consensus       406 ~~-~spdg----~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          406 TQ-LSPDG----SAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EE-ECTTS----SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EE-ECCCC----CEEEEEecCCCCCcEEEEEECCCCe
Confidence            88 87776    777665433    569999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=8.5e-24  Score=180.84  Aligned_cols=276  Identities=11%  Similarity=0.034  Sum_probs=182.2

Q ss_pred             CCeEEEEEecC--CceEEEEEeccCCCceEEEEEcCCCCEEEEEeC---CCeEEEEeccCCceeeeEEeecCCCceeEEE
Q 016982           31 NNEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH---DRNSYVWNQEGSEWVPTLVILRLNRAALCVQ  105 (379)
Q Consensus        31 dg~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~  105 (379)
                      ++.|++|+++.  ++...+... .+...+..++|+|+|+ |++++.   ++.|.+|++.+++.........+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~-~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLL-AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEE-EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeee-eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            45788887764  433333333 3446678899999998 655554   5899999998876444333344667889999


Q ss_pred             ECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeec--------CCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccc
Q 016982          106 WSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKR--------HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK  176 (379)
Q Consensus       106 ~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~  176 (379)
                      |+|+|++|++++ .++.+.+|++...........+...        ....+.+++|+|+++++++...++.|.+|++.  
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~--  170 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS--  170 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC--
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC--
Confidence            999999888888 6899999999743322122222111        12348899999999966666678899999972  


Q ss_pred             ccccccccCCCccCCcccce--EEEeecC-CcceEEEEECCCCCEEEE-EcCCCeEEEEECCCC-Cce--eeeeeeec--
Q 016982          177 GVDIKEKKEGTSSDTKFGEQ--ILQLDLS-FSWAFGVKWSPSGNTLAY-VGHNSMIYFVDDVGP-SPL--AQNVAFRD--  247 (379)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~v~~~~~sp~~~~l~~-~~~d~~i~v~d~~~~-~~~--~~~~~~~~--  247 (379)
                                     ..++.  +..+..+ ...+..++|+|+|++|++ ...++.|.+|++... ...  ...+....  
T Consensus       171 ---------------~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  235 (347)
T 3hfq_A          171 ---------------DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD  235 (347)
T ss_dssp             ---------------TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred             ---------------CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence                           12221  2222222 235778999999996665 567889999998742 111  12222111  


Q ss_pred             ----CCeeeEEEecCCcEEE-EE-eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccc
Q 016982          248 ----LPLRDVLFVSEKMVIG-VG-FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGND  321 (379)
Q Consensus       248 ----~~i~~~~~s~~~~~l~-~~-~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (379)
                          ..+..++|+|||++|+ +. .++.+.+|+.+..+........                                  
T Consensus       236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~----------------------------------  281 (347)
T 3hfq_A          236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI----------------------------------  281 (347)
T ss_dssp             CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE----------------------------------
T ss_pred             CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE----------------------------------
Confidence                3477899999999774 33 4778999998754434433221                                  


Q ss_pred             ccccccccccccccceeeeeeecccCCcccceEEEeec-CceEEEEeC--CCccc
Q 016982          322 AVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGL-DGKIVTWDL--ESQED  373 (379)
Q Consensus       322 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~-Dg~v~iW~~--~~~~~  373 (379)
                               ..|...+.+++ |++++    ++|++++. ++.|.+|++  .+++.
T Consensus       282 ---------~~~~~~~~~~~-~spdg----~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          282 ---------STEGDFPRDFD-LDPTE----AFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             ---------ECSSSCCCEEE-ECTTS----SEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             ---------ecCCCCcCeEE-ECCCC----CEEEEEEcCCCcEEEEEEeCCCCeE
Confidence                     23445577888 77776    77777765 599999954  45544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=1.8e-25  Score=210.36  Aligned_cols=240  Identities=12%  Similarity=0.099  Sum_probs=177.0

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..|.+++|||||++|++++. +.|++||+.++.......+..|...+..++|+|||++|++++. +.|++||+.+++...
T Consensus       109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ  186 (741)
T ss_dssp             EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred             cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence            34889999999999999876 8999999987510033456678888999999999999999874 689999999886443


Q ss_pred             eEEeecCCC----------------ceeEEEECCCCCEEEEEeCCC---------------------------------e
Q 016982           91 TLVILRLNR----------------AALCVQWSPKENKFAVGSGAK---------------------------------T  121 (379)
Q Consensus        91 ~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~d~---------------------------------~  121 (379)
                      ..  ..+..                .+..++|+|||++|++++.|+                                 .
T Consensus       187 ~~--~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          187 LT--ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             CC--CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             ec--cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            32  12222                147899999999999987765                                 7


Q ss_pred             EEEEEeec-CCceeEEEEEee-cCCcCEEEEEEcCCCcEEEEeeC-----CCeEEEEeccccccccccccCCCccCCccc
Q 016982          122 VCICYYEQ-ENNWWVSKLIRK-RHDSSVTSVAWHPNNVFLATTST-----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFG  194 (379)
Q Consensus       122 v~i~~~~~-~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  194 (379)
                      |.+||+.+ ++.   ...... .|...+..++| |||++|++++.     +..|++||+                  .++
T Consensus       265 l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~------------------~~g  322 (741)
T 2ecf_A          265 LGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL------------------ASN  322 (741)
T ss_dssp             EEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET------------------TTC
T ss_pred             EEEEECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC------------------CCC
Confidence            78888877 652   222211 47788999999 99999987654     567999996                  455


Q ss_pred             ceEEEeecCCc----ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeE-EEecCCcEEE-EEeCC
Q 016982          195 EQILQLDLSFS----WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDV-LFVSEKMVIG-VGFDC  268 (379)
Q Consensus       195 ~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~-~~~d~  268 (379)
                      +....+..+..    .+..++|+|||+++++++.++.++||.+..... ...+..+...+..+ .|+|+|+.|+ ++.++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSS
T ss_pred             ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC
Confidence            55555444332    346899999999989999999877876653333 46677677778887 5999998765 44433


Q ss_pred             ---CeEEEEecC
Q 016982          269 ---NPMVFAADE  277 (379)
Q Consensus       269 ---~~~i~~~~~  277 (379)
                         .+.+|..+.
T Consensus       402 ~~~~~~l~~~~~  413 (741)
T 2ecf_A          402 SARESQIYAVPL  413 (741)
T ss_dssp             CTTCBEEEEEET
T ss_pred             CCceEEEEEEEc
Confidence               678887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=3.9e-24  Score=183.36  Aligned_cols=242  Identities=12%  Similarity=0.034  Sum_probs=180.5

Q ss_pred             cCcceeEEEeCCCCcEEEEEec-------CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCCeEEE
Q 016982            9 FAQCITCHAWSPDHAMVAFCPN-------NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDRNSYV   80 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~-------dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v   80 (379)
                      ....+..++|+|+++++++++.       ++.|.+||..++  +.+..+.. ...+..++|+|++++++. ...++.|.+
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~  115 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTA  115 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            3567889999999998888763       568999999887  45555543 345788999999986654 455789999


Q ss_pred             EeccCCceeeeEEeecCC-------CceeEEEECCCCCEEEEEe--CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEE
Q 016982           81 WNQEGSEWVPTLVILRLN-------RAALCVQWSPKENKFAVGS--GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVA  151 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  151 (379)
                      ||..+++....+......       ..+.+++|+|+++.+++++  .++.|.+||..+.+   ....+ ..+...+.+++
T Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~---~~~~~-~~~~~~~~~~~  191 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK---LKTAI-QNTGKMSTGLA  191 (353)
T ss_dssp             EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE---EEEEE-CCCCTTCCCCE
T ss_pred             EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc---eEEEe-cCCCCccceEE
Confidence            999999866665432111       1268899999999888776  47889999998776   34444 33555678899


Q ss_pred             EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec----CCcceEEEEECCCCCEEEEEcC-CC
Q 016982          152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL----SFSWAFGVKWSPSGNTLAYVGH-NS  226 (379)
Q Consensus       152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~~-d~  226 (379)
                      |+|+++++++++.++.+.+||+                  .+++.+..+..    +...+..++|+|+++++++++. ++
T Consensus       192 ~s~dg~~l~~~~~~~~i~~~d~------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  253 (353)
T 3vgz_A          192 LDSEGKRLYTTNADGELITIDT------------------ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA  253 (353)
T ss_dssp             EETTTTEEEEECTTSEEEEEET------------------TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred             ECCCCCEEEEEcCCCeEEEEEC------------------CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence            9999999999999999999996                  55666655543    4456788999999998776654 59


Q ss_pred             eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EE-eCCCeEEEEecCC
Q 016982          227 MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VG-FDCNPMVFAADET  278 (379)
Q Consensus       227 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~-~d~~~~i~~~~~~  278 (379)
                      .|.+||+.+++. ...+... . ...++|+|+|+++. +. .++.+.+|+....
T Consensus       254 ~v~~~d~~~~~~-~~~~~~~-~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          254 EVLVVDTRNGNI-LAKVAAP-E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEEEEETTTCCE-EEEEECS-S-CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEECCCCcE-EEEEEcC-C-CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            999999988763 3444432 2 36799999998554 44 4778888886543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=5.4e-24  Score=182.09  Aligned_cols=254  Identities=11%  Similarity=0.047  Sum_probs=175.4

Q ss_pred             eccCcceeEEEeCCCCcEEEEEec---CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEe
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPN---NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWN   82 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~   82 (379)
                      ..+...+..++|+|+|+ |++++.   ++.|++|++.+++.+.+..+..+...+..++|+|+|++|++++ .++.+.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34556788899999999 554443   6899999998876666666666777889999999999888887 678999999


Q ss_pred             cc-CCceeeeEEeec---------CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982           83 QE-GSEWVPTLVILR---------LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        83 ~~-~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                      +. ++..........         ....+.+++|+|+|+++++...++.|.+|++...........+..........++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            96 333222222111         11247889999999966666668899999998332211122221223346788999


Q ss_pred             cCCCcEEEE-eeCCCeEEEEeccccccccccccCCCccCCcccc--eEEEeecCC------cceEEEEECCCCCEEE-EE
Q 016982          153 HPNNVFLAT-TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQLDLSF------SWAFGVKWSPSGNTLA-YV  222 (379)
Q Consensus       153 ~p~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~v~~~~~sp~~~~l~-~~  222 (379)
                      +|+|+++++ ...++.+.+|++..                ..++  .+..+....      ..+..++|+|+|++|+ +.
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~  258 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDT----------------QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN  258 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEET----------------TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecC----------------CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence            999996655 55688999999731                0122  122222211      4588999999999875 45


Q ss_pred             cCCCeEEEEECCCCC--ceeeeeeeecCCeeeEEEecCCcEEEEE-e-CCCeEEEEecC
Q 016982          223 GHNSMIYFVDDVGPS--PLAQNVAFRDLPLRDVLFVSEKMVIGVG-F-DCNPMVFAADE  277 (379)
Q Consensus       223 ~~d~~i~v~d~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~-d~~~~i~~~~~  277 (379)
                      ..++.|.+|++....  ..+..+..+...+..++|+|||++|+++ . ++.+.+|..+.
T Consensus       259 ~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          259 RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            568999999987332  2334444445568899999999977644 3 47899998764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=6.9e-25  Score=213.28  Aligned_cols=278  Identities=10%  Similarity=0.034  Sum_probs=209.0

Q ss_pred             cCcceeEEEeC-CCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCC-ceEEEEEcCCCCEEEEEeCCCeEE-EEeccC
Q 016982            9 FAQCITCHAWS-PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ-IVSGIDWSVRSNRIVTVSHDRNSY-VWNQEG   85 (379)
Q Consensus         9 ~~~~i~~~~~s-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~-vw~~~~   85 (379)
                      |...+.+++|+ |||++|++++ ++.|++|+..++.   ...+..|.. .+..++|+ +|+.|++++.+..+. +|++.+
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~  368 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT  368 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence            55679999999 9999999987 7899999998763   334667777 89999999 999999998888888 999988


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ++...   +..+...+..++|+|+|++|++++.++.|++||+.++.   ..... ..|...+.+++|+|||++|++++.+
T Consensus       369 ~~~~~---l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~---~~~~~-~~~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          369 GKAEK---FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK---PTVIE-RSREAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             CCEEE---CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEE-ECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             CCceE---ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc---eEEec-cCCCCCccceEECCCCCeEEEEecC
Confidence            76332   23567889999999999999999999999999998877   34444 5788899999999999999888765


Q ss_pred             C----------eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          166 G----------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       166 ~----------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      +          .|++||+                  ..++ +..+..|...+..++|+|+|++|++++.++...+|+...
T Consensus       442 ~~~~~~~~~~~~i~l~d~------------------~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          442 KHGETDGYVMQAIHVYDM------------------EGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CSSTTCSCCEEEEEEEET------------------TTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ccccccCCCCCeEEEEEC------------------CCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            4          8999997                  3444 666777778889999999999999988876666665321


Q ss_pred             CC------------------------------------------ceeeeeeeecCCeeeEEEecCCcEEEE---------
Q 016982          236 PS------------------------------------------PLAQNVAFRDLPLRDVLFVSEKMVIGV---------  264 (379)
Q Consensus       236 ~~------------------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~---------  264 (379)
                      ..                                          ..+..+..+...+..++++|||++++.         
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            10                                          011222334566788999999987764         


Q ss_pred             ---EeCCCeEEEEecC-CCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeee
Q 016982          265 ---GFDCNPMVFAADE-TGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCI  340 (379)
Q Consensus       265 ---~~d~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  340 (379)
                         +.+....+|..+. .+.....                                              .   ..+.++
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~~~l----------------------------------------------~---~~v~~~  613 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKVTEV----------------------------------------------K---NNLTDL  613 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCEEEE----------------------------------------------E---EEEEEE
T ss_pred             cccccCCCceEEEEECCCCcEEEe----------------------------------------------e---cCcceE
Confidence               2233344444332 1111110                                              1   356777


Q ss_pred             eeecccCCcccceEEEeecCceEEEEeCCCcc
Q 016982          341 VPLREAGSSRITRFTTSGLDGKIVTWDLESQE  372 (379)
Q Consensus       341 ~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~  372 (379)
                      + +++|+    ++|++++.| .|++||+.+++
T Consensus       614 ~-~S~DG----~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          614 R-LSADR----KTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             E-ECTTS----CEEEEEETT-SCEEEEESSCT
T ss_pred             E-ECCCC----CEEEEEcCC-cEEEEeCccCc
Confidence            7 88776    899998877 89999998876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=1.1e-24  Score=199.38  Aligned_cols=231  Identities=10%  Similarity=-0.009  Sum_probs=168.0

Q ss_pred             CcceeEEEeCCCCcEEEEEec-CCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEeC---CCeEEEEecc
Q 016982           10 AQCITCHAWSPDHAMVAFCPN-NNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVSH---DRNSYVWNQE   84 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~   84 (379)
                      ..+|++++|+|||++||+++. ||.++||++.++  +. ..+..|. ..+..++|+|| +.+++++.   +....+|.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--ET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT--EE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCC--Cc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            568999999999999999887 999999999776  33 4445555 68999999999 77777765   4555665554


Q ss_pred             C--CceeeeEEeecCCCceeEEEECCCCCE-EEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           85 G--SEWVPTLVILRLNRAALCVQWSPKENK-FAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        85 ~--~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      .  .....  .+. ....+...+|+|+|+. +++...++.+.+||+.+++   ..... . +..  .+++|+|||++|++
T Consensus        97 ~~~~g~~~--~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~---~~~l~-~-~~~--~~~~~spDG~~la~  166 (582)
T 3o4h_A           97 TSRPGEEQ--RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG---LRELA-R-LPG--FGFVSDIRGDLIAG  166 (582)
T ss_dssp             TTSTTCCE--ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE---EEEEE-E-ESS--CEEEEEEETTEEEE
T ss_pred             ccCCCccc--ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc---EEEee-c-CCC--ceEEECCCCCEEEE
Confidence            3  21111  212 2233456688888763 3333344555699998876   23332 2 222  78999999999998


Q ss_pred             eeCC----CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC--eEEEEECCC
Q 016982          162 TSTD----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS--MIYFVDDVG  235 (379)
Q Consensus       162 ~~~d----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~i~v~d~~~  235 (379)
                      ++.+    +.|++||+                  .+++ ...+..+...+..++|||||++|+++..++  .|++||+.+
T Consensus       167 ~~~~~~~~~~i~~~d~------------------~~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNL------------------SSGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             EEEEETTEEEEEEEET------------------TTCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred             EEEcCCCCeEEEEEcC------------------CCCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence            8776    77999986                  3344 346677788899999999999999888888  899999988


Q ss_pred             CCceeeeeeeecCCeeeEE--------EecCCcEEE-EEeCCCeEEEEe
Q 016982          236 PSPLAQNVAFRDLPLRDVL--------FVSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       236 ~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      +...  .+..+...+..++        |+|||.+++ ++.++.+.+|..
T Consensus       228 ~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          228 GSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            7643  5566666777777        999997776 557888888886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=5.5e-24  Score=186.52  Aligned_cols=255  Identities=10%  Similarity=0.042  Sum_probs=175.7

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc---------eEEE-----EEeccCCCceEEEEEcCCCCEEE----E
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK---------WEKL-----HVLQKHDQIVSGIDWSVRSNRIV----T   71 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~---------~~~~-----~~~~~~~~~v~~~~~~~~~~~l~----~   71 (379)
                      ...++.+++++++.++++++.++ +++|+...-.         ....     .. ..+...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEec
Confidence            34588999999999999998887 8998764210         0010     11 23566899999999999999    7


Q ss_pred             EeCCCeEEEEeccCC--------ceee-eEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEee
Q 016982           72 VSHDRNSYVWNQEGS--------EWVP-TLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRK  141 (379)
Q Consensus        72 ~~~d~~i~vw~~~~~--------~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  141 (379)
                      ++.|+.|++||+.+.        +... .....+|...|.+++|+|+ +++|++++.||.|++||+++..   ..... .
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~---~~~~~-~  189 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV---KVCAT-L  189 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE---EEEEE-E
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc---ceeec-c
Confidence            888999999998754        1111 1222458899999999997 8899999999999999998874   22233 5


Q ss_pred             cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec-------CCcceEEEEECC
Q 016982          142 RHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-------SFSWAFGVKWSP  214 (379)
Q Consensus       142 ~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp  214 (379)
                      .|...|.+++|+|+|++|++|+.||.|++||+                  + ++....+..       |...+.+++|++
T Consensus       190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~------------------~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLP------------------T-LQEKKVIPCPPFYESDHPVRVLDVLWIG  250 (434)
T ss_dssp             CGGGCEEEEEECTTSSCEEEEETTSCEEEECT------------------T-CCEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred             CCCCceeEEEEcCCCCEEEEEcCCCcEEEEcc------------------C-CcccccccCCcccCCCCceeEEEEEEec
Confidence            68899999999999999999999999999996                  2 233333322       234799999999


Q ss_pred             CCCEEEEEc-CCC------eEEEEECCCCCc----eeeeee-------eecCCeeeEEEecCCcEEEEE--eCCCeEEEE
Q 016982          215 SGNTLAYVG-HNS------MIYFVDDVGPSP----LAQNVA-------FRDLPLRDVLFVSEKMVIGVG--FDCNPMVFA  274 (379)
Q Consensus       215 ~~~~l~~~~-~d~------~i~v~d~~~~~~----~~~~~~-------~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~  274 (379)
                      ++.++++.+ .+|      .+++|++.+...    ....+.       ....+-..+.+-++.+++.++  ....+.++.
T Consensus       251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          251 TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA  330 (434)
T ss_dssp             TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred             CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence            988876533 343      489999876531    111111       111222233344776766533  344567777


Q ss_pred             ecCCC-cEEEEEEecc
Q 016982          275 ADETG-IWTFIKFLDE  289 (379)
Q Consensus       275 ~~~~~-~~~~~~~~~~  289 (379)
                      ....+ .|......+.
T Consensus       331 ~~~~~~~~~~~~~~d~  346 (434)
T 2oit_A          331 RQSDQINWESWLLEDS  346 (434)
T ss_dssp             ECTTSSCEEEEEECGG
T ss_pred             ecCCCCccEEEecccc
Confidence            65432 4777654443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=3.6e-24  Score=183.22  Aligned_cols=286  Identities=10%  Similarity=0.004  Sum_probs=187.1

Q ss_pred             eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEE-EEeCCCeEEEEeccCCceeee
Q 016982           14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIV-TVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      +.+++++++.++++++.++.|++||+.++  +.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++....
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            35678899999999999999999999887  5555555433 2567899999998665 455689999999999876555


Q ss_pred             EEeecC----CCceeEEEECCCCCEEEEEeCC------------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           92 LVILRL----NRAALCVQWSPKENKFAVGSGA------------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        92 ~~~~~~----~~~v~~~~~~~~~~~l~~~~~d------------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      +.....    ...+..++|+|+|+++++++.+            +.|.+||+.++.........  .+...+.+++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~d  158 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADD  158 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTT
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec--cCCCcccceeECCC
Confidence            532111    2337899999999999998865            89999999875422122333  33446889999999


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC------------------------cceEEEE
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF------------------------SWAFGVK  211 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~v~~~~  211 (379)
                      ++ +++++.  .|.+||+                  .+++.+..+..+.                        .....++
T Consensus       159 g~-l~~~~~--~i~~~d~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (349)
T 1jmx_B          159 GS-LYVAGP--DIYKMDV------------------KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  217 (349)
T ss_dssp             SC-EEEESS--SEEEECT------------------TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             Cc-EEEccC--cEEEEeC------------------CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence            99 555443  4999997                  3333333332211                        0234567


Q ss_pred             ECCCCCEEEEEcCCC-eEEEEECCCCCceeeeeeeecCCeeeEEEec-CCcEEEEEeCCCeEEEEecCCCcEEEEEEecc
Q 016982          212 WSPSGNTLAYVGHNS-MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS-EKMVIGVGFDCNPMVFAADETGIWTFIKFLDE  289 (379)
Q Consensus       212 ~sp~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~  289 (379)
                      +++++.......... .+..+|..++......+..+...+..++|+| +|++++++ ++.+.+|+.........   +  
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~---~--  291 (349)
T 1jmx_B          218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKA---A--  291 (349)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEE---E--
T ss_pred             ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEE---E--
Confidence            776553221111111 1223555554432233333556788999999 99998877 88899998765321111   1  


Q ss_pred             cccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          290 RKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                                                .....+.+++ +++++    ++|++++.|+.|++||+.
T Consensus       292 ------------------------------------------~~~~~~~~~~-~s~dg----~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          292 ------------------------------------------NLDHTYYCVA-FDKKG----DKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             ------------------------------------------ECSSCCCEEE-ECSSS----SCEEEESBSSEEEEEETT
T ss_pred             ------------------------------------------cCCCCccceE-ECCCC----CEEEEecCCCeEEEEecc
Confidence                                                      0112356778 77665    778888889999999999


Q ss_pred             CccccccC
Q 016982          370 SQEDLLNY  377 (379)
Q Consensus       370 ~~~~~~~~  377 (379)
                      +++.+..+
T Consensus       325 ~~~~~~~~  332 (349)
T 1jmx_B          325 TLEKVKNI  332 (349)
T ss_dssp             TTEEEEEE
T ss_pred             ccceeeee
Confidence            98877654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=2.4e-24  Score=202.20  Aligned_cols=241  Identities=12%  Similarity=0.144  Sum_probs=168.3

Q ss_pred             ceeEEEeCCCCcEEEEEecC---------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982           12 CITCHAWSPDHAMVAFCPNN---------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      .|.+++|||||++|++++.+         +.+++||+.+++...+.....|...+..++|||||++|++++. +.|++||
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence            49999999999999998764         7889999998754334334455556889999999999999886 7999999


Q ss_pred             ccCCceeeeEEeecCCCc------------------eeEEEECCCCCEEEEEeCCC------------------------
Q 016982           83 QEGSEWVPTLVILRLNRA------------------ALCVQWSPKENKFAVGSGAK------------------------  120 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~l~~~~~d~------------------------  120 (379)
                      +.+++.....  ..+...                  +.+++|+|||+.|++++.++                        
T Consensus       141 ~~~g~~~~~~--~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (723)
T 1xfd_A          141 HVGKQAIRVV--STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (723)
T ss_dssp             SSSSCCEEEE--CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             CCCCceEEEe--cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccC
Confidence            9988754432  222222                  37899999999999987543                        


Q ss_pred             ----------eEEEEEeecCCceeEEEEEeec------CCcCEEEEEEcCCCcEEEEeeC----CCeEEEEecccccccc
Q 016982          121 ----------TVCICYYEQENNWWVSKLIRKR------HDSSVTSVAWHPNNVFLATTST----DGKCRVFSTFIKGVDI  180 (379)
Q Consensus       121 ----------~v~i~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~----d~~i~v~d~~~~~~~~  180 (379)
                                .|++||+.++..   ...+ ..      +...+..++|+|||+++++...    +..|++||+       
T Consensus       219 ~~~G~~~~~~~l~~~d~~~~~~---~~~l-~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~-------  287 (723)
T 1xfd_A          219 PKAGSENPSISLHVIGLNGPTH---DLEM-MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA-------  287 (723)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCC---CEEC-CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET-------
T ss_pred             CCCCCCCCeeEEEEEECCCCce---eEEe-eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC-------
Confidence                      788888877652   2233 22      3567899999999998876643    357999996       


Q ss_pred             ccccCCCccCCcccceEEEeec-CCcce----EEEEECCCCCEEEEE--cCCC------eEEEEECCCCCc--eeeeeee
Q 016982          181 KEKKEGTSSDTKFGEQILQLDL-SFSWA----FGVKWSPSGNTLAYV--GHNS------MIYFVDDVGPSP--LAQNVAF  245 (379)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v----~~~~~sp~~~~l~~~--~~d~------~i~v~d~~~~~~--~~~~~~~  245 (379)
                                 .++++...+.. +...+    ..++|+|||+.|+..  ..++      .|++||+.....  ....+..
T Consensus       288 -----------~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  356 (723)
T 1xfd_A          288 -----------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS  356 (723)
T ss_dssp             -----------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred             -----------CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence                       45555444432 23333    378999999977754  4666      577777323322  1234443


Q ss_pred             ecCCeee-EEEecCCcEEE-EEeC---CCeEEEEecC
Q 016982          246 RDLPLRD-VLFVSEKMVIG-VGFD---CNPMVFAADE  277 (379)
Q Consensus       246 ~~~~i~~-~~~s~~~~~l~-~~~d---~~~~i~~~~~  277 (379)
                      +...+.. ++|+|||+.|+ ++.+   +.+.+|..+.
T Consensus       357 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          357 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence            3344554 69999999887 4444   5677877653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2.2e-24  Score=209.70  Aligned_cols=279  Identities=9%  Similarity=-0.003  Sum_probs=210.7

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      +.+|...+.++.|+++ .++++++.++.+.||.+.... .....+..|. .+..++|+|+|+.|+++. ++.|.+|++..
T Consensus       199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g-~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~  274 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG-KDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDT  274 (1045)
T ss_dssp             EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS-CSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTT
T ss_pred             CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC-CcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCc
Confidence            4678899999999998 667777788999999876421 2334455554 456789999999998874 88999999955


Q ss_pred             CceeeeEEeec-----------CCCceeEEEEC-CCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-CEEEEEE
Q 016982           86 SEWVPTLVILR-----------LNRAALCVQWS-PKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-SVTSVAW  152 (379)
Q Consensus        86 ~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-~v~~~~~  152 (379)
                      .... .+  ..           +...+.+++|+ |+|+.|++++ ++.+.+|+...+.    ...+ ..|.. .+..++|
T Consensus       275 ~~l~-~l--~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~----~~~~-~~~~~~~~~~~~~  345 (1045)
T 1k32_A          275 EKIE-KI--EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY----VLKV-PEPLRIRYVRRGG  345 (1045)
T ss_dssp             CCEE-EC--CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB----EEEC-SCCSCEEEEEECS
T ss_pred             eEee-ee--ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc----eEEc-cCCCcceEEeeeE
Confidence            4322 21  22           33478999999 9999999988 7899999887665    2334 56666 8999999


Q ss_pred             cCCCcEEEEeeCCCeEE-EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982          153 HPNNVFLATTSTDGKCR-VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~  231 (379)
                      + +++.|++++.++.+. +|++                  ..++ ...+..|...+..++|+|||++|++++.++.|++|
T Consensus       346 s-dg~~l~~~s~~~~l~~~~d~------------------~~~~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~  405 (1045)
T 1k32_A          346 D-TKVAFIHGTREGDFLGIYDY------------------RTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTV  405 (1045)
T ss_dssp             S-SEEEEEEEETTEEEEEEEET------------------TTCC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             c-CCCeEEEEECCCceEEEEEC------------------CCCC-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence            9 999999998888888 8886                  2233 33444667789999999999999999999999999


Q ss_pred             ECCCCCceeeeeeeecCCeeeEEEecCCcEEEE-EeC----------CCeEEEEecCCCcEEEEEEecccccCCCCCccC
Q 016982          232 DDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGV-GFD----------CNPMVFAADETGIWTFIKFLDERKTSSSGPKYG  300 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~d----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (379)
                      |+.+++ .......|...+.+++|+|||++|+. +.+          ..+++|+.....   . .               
T Consensus       406 d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---~-~---------------  465 (1045)
T 1k32_A          406 DLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---I-F---------------  465 (1045)
T ss_dssp             ETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---E-E---------------
T ss_pred             ECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc---E-E---------------
Confidence            998876 33555567888999999999998874 333          267777765421   1 1               


Q ss_pred             CCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          301 SQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                                  .+..|...+..++ |++++    ++|++++.++..++|+...
T Consensus       466 ----------------------------~l~~~~~~~~~~~-~spdG----~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          466 ----------------------------AATTENSHDYAPA-FDADS----KNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             ----------------------------ECSCSSSBEEEEE-ECTTS----CEEEEEESCCCCCEECSSS
T ss_pred             ----------------------------EeeCCCcccCCce-EcCCC----CEEEEEecccCCcCcchhc
Confidence                                        1245666778888 77776    8999999998888888654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.93  E-value=8.3e-24  Score=198.03  Aligned_cols=231  Identities=12%  Similarity=0.113  Sum_probs=160.4

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEE-EEeccCC-----------------CceEEEEEcCCCCEEEEEe
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKL-HVLQKHD-----------------QIVSGIDWSVRSNRIVTVS   73 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~   73 (379)
                      .+..+.|.  |+.+++++.++ | +||+.+++.  + ..+..|.                 ..|.+++|+|+ +.++.+.
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~--~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~   99 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKS--AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT   99 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE-E-EEEC---------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE
T ss_pred             cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcE--eeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE
Confidence            35557777  66677777777 8 999998743  1 2222222                 46999999999 6666654


Q ss_pred             CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec-----CCceeEEEEEeecCCcC--
Q 016982           74 HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ-----ENNWWVSKLIRKRHDSS--  146 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~-----~~~~~~~~~~~~~~~~~--  146 (379)
                       ++.|++||+.+++....   ..+...+.+++|+|||+.|+++ .++.|++|++.+     +..   .+.. ..+...  
T Consensus       100 -~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~---~~~~-~~~~~~~~  170 (706)
T 2z3z_A          100 -QGGLVGFDMLARKVTYL---FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA---IAVT-IDGTETLV  170 (706)
T ss_dssp             -TTEEEEEETTTTEEEEE---ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC---EESC-SCCBTTEE
T ss_pred             -CCEEEEEECCCCceEEc---cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc---EEec-cCCCCCeE
Confidence             59999999998864332   3456778999999999999995 579999999987     652   2222 222222  


Q ss_pred             ------------EEEEEEcCCCcEEEEee---------------------------------CCCeEEEEeccccccccc
Q 016982          147 ------------VTSVAWHPNNVFLATTS---------------------------------TDGKCRVFSTFIKGVDIK  181 (379)
Q Consensus       147 ------------v~~~~~~p~~~~l~~~~---------------------------------~d~~i~v~d~~~~~~~~~  181 (379)
                                  +.++.|+|||++|++++                                 .+..|.+||+        
T Consensus       171 ~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~--------  242 (706)
T 2z3z_A          171 YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL--------  242 (706)
T ss_dssp             ESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET--------
T ss_pred             cccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC--------
Confidence                        47899999999999987                                 3467889986        


Q ss_pred             cccCCCccCCcccceEEEe--ecCCcceEEEEECCCCCEEEEEcCCC-----eEEEEECCCCCceeeeeeee-cC---Ce
Q 016982          182 EKKEGTSSDTKFGEQILQL--DLSFSWAFGVKWSPSGNTLAYVGHNS-----MIYFVDDVGPSPLAQNVAFR-DL---PL  250 (379)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~-~~---~i  250 (379)
                                .+++.....  ..+...+..++|+|||++|++++.++     .|++||+.++.......... ..   .+
T Consensus       243 ----------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          243 ----------ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             ----------TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             ----------CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence                      333332222  24566789999999999999877665     89999998874332222222 21   24


Q ss_pred             eeEEEec--CCcEEEEE-eCCCeEEEEec
Q 016982          251 RDVLFVS--EKMVIGVG-FDCNPMVFAAD  276 (379)
Q Consensus       251 ~~~~~s~--~~~~l~~~-~d~~~~i~~~~  276 (379)
                      ..++|+|  ||++++++ .++.+.+|..+
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEE
Confidence            6789999  99988754 56778888876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.93  E-value=6.5e-22  Score=170.10  Aligned_cols=289  Identities=9%  Similarity=-0.007  Sum_probs=186.8

Q ss_pred             EeCCCCcEEEEEec----CCeEEEEEec--CCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC----CeEEEEeccC-
Q 016982           17 AWSPDHAMVAFCPN----NNEVHIYKLI--QEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD----RNSYVWNQEG-   85 (379)
Q Consensus        17 ~~s~~~~~l~~~~~----dg~i~i~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw~~~~-   85 (379)
                      +..+...++++|+.    ++.|++|++.  +++...+..+  +...+..++|+|+|++|++++.+    +.|.+|++.. 
T Consensus         8 ~~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~   85 (361)
T 3scy_A            8 STTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE   85 (361)
T ss_dssp             CGGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT
T ss_pred             hhCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC
Confidence            33444556777754    5689999875  4544555555  66677889999999999998875    7999999876 


Q ss_pred             -CceeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCce-eEEEEEe-e--------cCCcCEEEEEEc
Q 016982           86 -SEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNW-WVSKLIR-K--------RHDSSVTSVAWH  153 (379)
Q Consensus        86 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~-~~~~~~~-~--------~~~~~v~~~~~~  153 (379)
                       ++.........+......+++  ++++|++++ .++.+.+|++...... ....... .        .+...+.+++|+
T Consensus        86 ~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A           86 KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT  163 (361)
T ss_dssp             TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred             CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence             443333333334556777888  788777776 5789999999754321 0111110 0        112346889999


Q ss_pred             CCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCccc----c-e------EEEeecCCcceEEEEECCCCCEEEE
Q 016982          154 PNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG----E-Q------ILQLDLSFSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       154 p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~-~------~~~~~~~~~~v~~~~~sp~~~~l~~  221 (379)
                      |+++++++++ .++.+.+|++..                ..+    + .      ..........+..++|+|+|++|++
T Consensus       164 pdg~~l~~~~~~~~~v~v~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  227 (361)
T 3scy_A          164 PDGKYLLADDLGTDQIHKFNINP----------------NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL  227 (361)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECT----------------TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEEcC----------------CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE
Confidence            9998766555 488999998731                111    1 1      1111223445789999999998877


Q ss_pred             Ec-CCCeEEEEECCCCCc-eeeeee---eecCCeeeEEEecCCcEEEE-EeC--CCeEEEEec-CCCcEEEEEEeccccc
Q 016982          222 VG-HNSMIYFVDDVGPSP-LAQNVA---FRDLPLRDVLFVSEKMVIGV-GFD--CNPMVFAAD-ETGIWTFIKFLDERKT  292 (379)
Q Consensus       222 ~~-~d~~i~v~d~~~~~~-~~~~~~---~~~~~i~~~~~s~~~~~l~~-~~d--~~~~i~~~~-~~~~~~~~~~~~~~~~  292 (379)
                      ++ .++.|.+||+.++.. .+..+.   .+......++|+|||++|++ ..+  +.+.+|..+ ..+.+......     
T Consensus       228 ~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~-----  302 (361)
T 3scy_A          228 INEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ-----  302 (361)
T ss_dssp             EETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE-----
T ss_pred             EcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe-----
Confidence            66 689999999875531 112221   12234679999999998864 433  689999987 34444433321     


Q ss_pred             CCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee-cCceEEEEeCC--
Q 016982          293 SSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTWDLE--  369 (379)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~v~iW~~~--  369 (379)
                                                            .. ...+.+++ |++++    ++|++++ .++.|.+|++.  
T Consensus       303 --------------------------------------~~-g~~~~~~~-~spdg----~~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          303 --------------------------------------LT-GIHPRNFI-ITPNG----KYLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             --------------------------------------EC-SSCCCEEE-ECTTS----CEEEEEETTTTEEEEEEECTT
T ss_pred             --------------------------------------cC-CCCCceEE-ECCCC----CEEEEEECCCCCEEEEEEECC
Confidence                                                  11 23466788 77776    7777776 67999996554  


Q ss_pred             Ccccc
Q 016982          370 SQEDL  374 (379)
Q Consensus       370 ~~~~~  374 (379)
                      +++..
T Consensus       339 ~g~~~  343 (361)
T 3scy_A          339 TGLLT  343 (361)
T ss_dssp             TCCEE
T ss_pred             CCcEe
Confidence            55443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.6e-22  Score=171.81  Aligned_cols=243  Identities=11%  Similarity=0.099  Sum_probs=171.6

Q ss_pred             CcceeEEEeCCCCcEEEEEec-CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC---eEEEEeccC
Q 016982           10 AQCITCHAWSPDHAMVAFCPN-NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR---NSYVWNQEG   85 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~vw~~~~   85 (379)
                      ...+ +++|+|+|+++++++. ++.|.+||+.+++. ....+..+..+..+++|+|++++|+++..++   .|.+||+.+
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            4556 9999999997766655 88999999988743 1555666666666699999999998555442   899999999


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEE-eCCCe-EEEEEeecCCceeEE-EEEeecCCcCEEEEEEcCCCcEEEE-
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVG-SGAKT-VCICYYEQENNWWVS-KLIRKRHDSSVTSVAWHPNNVFLAT-  161 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-v~i~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~-  161 (379)
                      ++....+.   ....+.+++|+|+|++++++ ..++. +.+|+++........ ... .........++|+|+++++++ 
T Consensus       118 ~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          118 NKFISTIP---IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF-ISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             TEEEEEEE---CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE-ECSSSSEEEEEECTTSSEEEEE
T ss_pred             CCeEEEEE---CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc-ccCCCCccceEECCCCCEEEEE
Confidence            88655542   34567899999999866555 45578 999999864421111 111 244556899999999986554 


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccce---EEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCC
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ---ILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPS  237 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~  237 (379)
                      +..++.|.+||+                  .+++.   +..+.. ...+..++|+|+|++|++++ .++.|.+||+.+++
T Consensus       194 ~~~~~~v~v~d~------------------~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          194 NLIGNSIGILET------------------QNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             ETTTTEEEEEEC------------------SSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred             eCCCCeEEEEEC------------------CCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence            446899999997                  44444   555554 35578899999999876665 57889999998765


Q ss_pred             ce-eeeeeee----cCC---eeeEEEecCCcEEE-EEe-CCCeEEEEecC
Q 016982          238 PL-AQNVAFR----DLP---LRDVLFVSEKMVIG-VGF-DCNPMVFAADE  277 (379)
Q Consensus       238 ~~-~~~~~~~----~~~---i~~~~~s~~~~~l~-~~~-d~~~~i~~~~~  277 (379)
                      .. +..+..+    ..+   ...++|+|||++|+ ++. ++.+.+|+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            31 1222211    122   24589999999775 443 45788998765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.92  E-value=2.4e-24  Score=202.04  Aligned_cols=233  Identities=13%  Similarity=0.150  Sum_probs=160.9

Q ss_pred             eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCC---ceEEEEEcCCCCEEEEEeC---------CCeEEEE
Q 016982           14 TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ---IVSGIDWSVRSNRIVTVSH---------DRNSYVW   81 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~vw   81 (379)
                      .+++|+|+|++++++ .|+.|++||+.++  +....+..|..   .+.+++|||||++|++++.         ++.|++|
T Consensus        19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           19 FFPNWISGQEYLHQS-ADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCEESSSSEEEEEC-TTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CccEECCCCeEEEEc-CCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            378999999766554 6899999999987  44445554433   3899999999999998876         6899999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE--------------
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV--------------  147 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v--------------  147 (379)
                      |+.+++......   ....+..++|+|||+.|+++. ++.|++|++.++..   .+....++...+              
T Consensus        96 d~~~g~~~~~~~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~---~~l~~~~~~~~v~~g~~~~v~~ee~~  168 (719)
T 1z68_A           96 DLSNGEFVRGNE---LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPP---FQITFNGRENKIFNGIPDWVYEEEML  168 (719)
T ss_dssp             ETTTTEECCSSC---CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCCCCBTTTEEESSCCHHHHHHTT
T ss_pred             ECCCCcccccee---cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCc---EEEecCCCcCCeEcccccceeeeecc
Confidence            999987521111   135688999999999999986 78999999987763   222112222222              


Q ss_pred             ---EEEEEcCCCcEEEEeeCCC----------------------------------eEEEEeccccccccccccCCCccC
Q 016982          148 ---TSVAWHPNNVFLATTSTDG----------------------------------KCRVFSTFIKGVDIKEKKEGTSSD  190 (379)
Q Consensus       148 ---~~~~~~p~~~~l~~~~~d~----------------------------------~i~v~d~~~~~~~~~~~~~~~~~~  190 (379)
                         .+++|+|||++|++++.|.                                  .|++||+.                
T Consensus       169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~----------------  232 (719)
T 1z68_A          169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT----------------  232 (719)
T ss_dssp             CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----------------
T ss_pred             cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----------------
Confidence               4899999999999987552                                  67778762                


Q ss_pred             CcccceE--------EEeecCCcceEEEEECCCCCEEEEEcC--C--CeEEEEE----CCCCCceeeee----eeecCCe
Q 016982          191 TKFGEQI--------LQLDLSFSWAFGVKWSPSGNTLAYVGH--N--SMIYFVD----DVGPSPLAQNV----AFRDLPL  250 (379)
Q Consensus       191 ~~~~~~~--------~~~~~~~~~v~~~~~sp~~~~l~~~~~--d--~~i~v~d----~~~~~~~~~~~----~~~~~~i  250 (379)
                        .++..        ..+..|...+..++|+||++++++...  +  ..|.+||    ..+++.. ..+    ..+...+
T Consensus       233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~  309 (719)
T 1z68_A          233 --YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWA  309 (719)
T ss_dssp             --CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCS
T ss_pred             --CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceE
Confidence              22221        113356778999999999887776432  2  3588899    6665422 333    3455566


Q ss_pred             e-----eEEEecCCcEEE--EE-eCCCeEEEEe
Q 016982          251 R-----DVLFVSEKMVIG--VG-FDCNPMVFAA  275 (379)
Q Consensus       251 ~-----~~~~s~~~~~l~--~~-~d~~~~i~~~  275 (379)
                      .     .+.|+|||+.++  .+ .++...+|..
T Consensus       310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~  342 (719)
T 1z68_A          310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYI  342 (719)
T ss_dssp             SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEE
T ss_pred             ccccCCccEECCCCCeEEEEEEccCCceEEEEE
Confidence            6     899999998554  23 4444444443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.92  E-value=8.5e-23  Score=177.40  Aligned_cols=245  Identities=12%  Similarity=0.062  Sum_probs=162.5

Q ss_pred             eeccCcceeE-----EEeCCCCcEEEEEec-CC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCe
Q 016982            6 VHQFAQCITC-----HAWSPDHAMVAFCPN-NN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN   77 (379)
Q Consensus         6 ~~~~~~~i~~-----~~~s~~~~~l~~~~~-dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   77 (379)
                      +..|......     .+|||||++|++++. ++  .|.+||+.++  +......++...+..+.|+|||+.|+.++.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~  103 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN  103 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence            3444444444     789999999998887 66  4888888876  555555566555567889999999999999999


Q ss_pred             EEEEeccCCceeeeEEeecCCCceeEE--EECCCCCEEEEE----------------------eCCCeEEEEEeecCCce
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAALCV--QWSPKENKFAVG----------------------SGAKTVCICYYEQENNW  133 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~v~i~~~~~~~~~  133 (379)
                      |++||+.+++......  .+...+...  .++|+++.++..                      ..+..|.+||+.+++  
T Consensus       104 l~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--  179 (388)
T 3pe7_A          104 LMRVDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--  179 (388)
T ss_dssp             EEEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--
T ss_pred             EEEEECCCCcceeeee--chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--
Confidence            9999999987555443  333444333  348999988743                      234678888888776  


Q ss_pred             eEEEEEeecCCcCEEEEEEcC-CCcEEEEeeCC------CeEEEEeccccccccccccCCCccCCcccceEEEeecCC--
Q 016982          134 WVSKLIRKRHDSSVTSVAWHP-NNVFLATTSTD------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF--  204 (379)
Q Consensus       134 ~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  204 (379)
                        ...+ ..+...+..++|+| +++.|+....+      ..|.++|+                  . +.....+..+.  
T Consensus       180 --~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~------------------~-~~~~~~l~~~~~~  237 (388)
T 3pe7_A          180 --STVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE------------------D-GTNMRKVKTHAEG  237 (388)
T ss_dssp             --EEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET------------------T-SCCCEESCCCCTT
T ss_pred             --eEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC------------------C-CCceEEeeeCCCC
Confidence              2333 35566789999999 99988877653      26777764                  1 22333343333  


Q ss_pred             cceEEEEECCCCCEEEEEcC-C----CeEEEEECCCCCce-eeeeeeec---CCeeeEEEecCCcEEEE----------E
Q 016982          205 SWAFGVKWSPSGNTLAYVGH-N----SMIYFVDDVGPSPL-AQNVAFRD---LPLRDVLFVSEKMVIGV----------G  265 (379)
Q Consensus       205 ~~v~~~~~sp~~~~l~~~~~-d----~~i~v~d~~~~~~~-~~~~~~~~---~~i~~~~~s~~~~~l~~----------~  265 (379)
                      ..+..++|+|||+.|+..+. +    ..|++||+.+++.. +.....+.   .....+.|+|||+.|+.          .
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  317 (388)
T 3pe7_A          238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE  317 (388)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred             cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence            35778999999998766442 1    24999999887632 11222110   11234589999987773          2


Q ss_pred             eCCCeEEEEecCC
Q 016982          266 FDCNPMVFAADET  278 (379)
Q Consensus       266 ~d~~~~i~~~~~~  278 (379)
                      .+..+.+|+....
T Consensus       318 ~~~~i~~~d~~~~  330 (388)
T 3pe7_A          318 NDPFLYVFNMKNG  330 (388)
T ss_dssp             CCCEEEEEETTTT
T ss_pred             CCCEEEEEeccCC
Confidence            3446667765543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=2.2e-21  Score=166.75  Aligned_cols=248  Identities=11%  Similarity=0.076  Sum_probs=171.2

Q ss_pred             cCcceeEEEeCCCCcEEEEEecC----CeEEEEEecC--CceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEE
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNN----NEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVW   81 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw   81 (379)
                      +...+..++|+|+|++|++++.+    +.|.+|++..  ++.+.+.....+......+++  ++++|++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56677889999999999988875    7999999876  445566666656666777888  788777766 57899999


Q ss_pred             eccCCceeeeE-EeecC-----------CCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCc------eeEE---EEE
Q 016982           82 NQEGSEWVPTL-VILRL-----------NRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENN------WWVS---KLI  139 (379)
Q Consensus        82 ~~~~~~~~~~~-~~~~~-----------~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~------~~~~---~~~  139 (379)
                      ++......... ....+           ...+.+++|+|+|+++++++ .++.|.+|+++....      ....   ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99754322111 10111           22357899999999776655 488999999986542      1111   122


Q ss_pred             eecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccc--eEEEe---ecCCcceEEEEEC
Q 016982          140 RKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQL---DLSFSWAFGVKWS  213 (379)
Q Consensus       140 ~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~v~~~~~s  213 (379)
                      ..........++|+|+++++++++ .++.|.+|++.                  .+.  .+..+   ..+......++|+
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~------------------~g~~~~~~~~~~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYA------------------DGMLDEIQTVAADTVNAQGSGDIHLS  267 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEE------------------TTEEEEEEEEESCSSCCCCEEEEEEC
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEec------------------CCceEEeEEEecCCCCCCCcccEEEC
Confidence            134456678999999999887776 68999999972                  222  12222   2223446899999


Q ss_pred             CCCCEEEEEcC--CCeEEEEECC--CCCc-eeeeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEecC
Q 016982          214 PSGNTLAYVGH--NSMIYFVDDV--GPSP-LAQNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAADE  277 (379)
Q Consensus       214 p~~~~l~~~~~--d~~i~v~d~~--~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~~  277 (379)
                      |||++|+++..  ++.|.+|++.  ++.. .+..+.. ...+..++|+|+|++|+++  .++.+.+|..+.
T Consensus       268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence            99999877665  4899999986  2221 2233333 4568899999999977744  467888887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=4.3e-23  Score=180.85  Aligned_cols=203  Identities=14%  Similarity=0.108  Sum_probs=152.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC-----------ceee--eEEeecCCCceeEEEECCCCCEEE----EE
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS-----------EWVP--TLVILRLNRAALCVQWSPKENKFA----VG  116 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-----------~~~~--~~~~~~~~~~v~~~~~~~~~~~l~----~~  116 (379)
                      ...++.+++++++.++++++.++ +++|+....           ....  ......+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578999999999999999887 888875321           0000  001123567899999999999999    78


Q ss_pred             eCCCeEEEEEeecC--------CceeEEEEEeecCCcCEEEEEEcCC-CcEEEEeeCCCeEEEEeccccccccccccCCC
Q 016982          117 SGAKTVCICYYEQE--------NNWWVSKLIRKRHDSSVTSVAWHPN-NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGT  187 (379)
Q Consensus       117 ~~d~~v~i~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  187 (379)
                      +.|+.|++||++..        +.......+ .+|...|.+++|+|+ +++|++++.||.|++||+              
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~--------------  179 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV--------------  179 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEE--------------
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEc--------------
Confidence            88999999998765        111112333 678999999999998 799999999999999997              


Q ss_pred             ccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee-------cCCeeeEEEecCCc
Q 016982          188 SSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR-------DLPLRDVLFVSEKM  260 (379)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~  260 (379)
                          +.+..+.....|...|.+++|+|+|++|++++.||.|++||++ +. ....+..+       ...+.+++|++++.
T Consensus       180 ----~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~~  253 (434)
T 2oit_A          180 ----TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWIGTYV  253 (434)
T ss_dssp             ----SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred             ----CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEecCce
Confidence                4455555566788899999999999999999999999999988 33 22333322       23789999999998


Q ss_pred             EEEEE--eCCC------eEEEEecCC
Q 016982          261 VIGVG--FDCN------PMVFAADET  278 (379)
Q Consensus       261 ~l~~~--~d~~------~~i~~~~~~  278 (379)
                      ++++.  .++.      +++|.....
T Consensus       254 ~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          254 FAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEEccCCCccCCCCceEEEEeccC
Confidence            88632  3322      778887643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.91  E-value=9.5e-21  Score=162.91  Aligned_cols=280  Identities=11%  Similarity=0.057  Sum_probs=180.0

Q ss_pred             EEEEEecC--CeEEEEEec--CCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc-CCceeeeEEeecC
Q 016982           24 MVAFCPNN--NEVHIYKLI--QEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE-GSEWVPTLVILRL   97 (379)
Q Consensus        24 ~l~~~~~d--g~i~i~~~~--~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~   97 (379)
                      ++++|+..  +.|.+|++.  +++...+.... .....+..++|+|+|++|++++.+ .|.+|++. +++........ .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-I   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-C
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-c
Confidence            45566653  578888764  44334343332 233467899999999999998887 99999997 77654333211 1


Q ss_pred             CCceeEEEECCCCCE--EEEEe-------------CCCeEEEEEeecCCceeEEEEEe---ecCCcCEEEEEEcCCCcEE
Q 016982           98 NRAALCVQWSPKENK--FAVGS-------------GAKTVCICYYEQENNWWVSKLIR---KRHDSSVTSVAWHPNNVFL  159 (379)
Q Consensus        98 ~~~v~~~~~~~~~~~--l~~~~-------------~d~~v~i~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l  159 (379)
                      .+.+.+++|+|+|++  ++++.             .++.+.+|+++....  +...+.   ..+...+.+++|+|+|++|
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~spdG~~l  159 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQNYEYQENTGIHGMVFDPTETYL  159 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--CcceEeeEEeCCCCcceEEEECCCCCEE
Confidence            134667999999994  44553             689999999974321  222221   1355678999999999988


Q ss_pred             EEeeC-CCeEEEEeccccccccccccCCCccCCcccce--EEEee--cCCcceEEEEECCCCCEEEEEcC-CCeEEEEEC
Q 016982          160 ATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ--ILQLD--LSFSWAFGVKWSPSGNTLAYVGH-NSMIYFVDD  233 (379)
Q Consensus       160 ~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~v~~~~~sp~~~~l~~~~~-d~~i~v~d~  233 (379)
                      +++.. ++.|++|++.                 .+++.  +..+.  .+...+..++|+|+|++|++++. ++.|.+|++
T Consensus       160 ~~~~~~~~~v~~~~~~-----------------~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          160 YSADLTANKLWTHRKL-----------------ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             EEEETTTTEEEEEEEC-----------------TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEcCCCCEEEEEEEC-----------------CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            87654 6799999972                 12332  22333  23456899999999999887764 789999986


Q ss_pred             C--CCCce--eeeee-------eecC------CeeeEE-EecCCcEEEEE-e-CC-----CeEEEEecCCCcEEEEEEec
Q 016982          234 V--GPSPL--AQNVA-------FRDL------PLRDVL-FVSEKMVIGVG-F-DC-----NPMVFAADETGIWTFIKFLD  288 (379)
Q Consensus       234 ~--~~~~~--~~~~~-------~~~~------~i~~~~-~s~~~~~l~~~-~-d~-----~~~i~~~~~~~~~~~~~~~~  288 (379)
                      .  +++..  ...+.       ++..      .+..++ |+|||++|+++ . ++     .+.+|..+..+........ 
T Consensus       223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~-  301 (365)
T 1jof_A          223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-  301 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-
T ss_pred             eCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-
Confidence            5  33311  11111       1111      478899 99999987643 2 23     6899988644432211100 


Q ss_pred             ccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecc---cCCcccceEEEeec-CceEE
Q 016982          289 ERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLRE---AGSSRITRFTTSGL-DGKIV  364 (379)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~~~~~l~t~~~-Dg~v~  364 (379)
                                                               ...+...+..++ ++|   ++    ++|++++. ++.|+
T Consensus       302 -----------------------------------------~~~~~~~~~~~a-~sp~~~dg----~~l~v~~~~~~~v~  335 (365)
T 1jof_A          302 -----------------------------------------SPTPTSGGHSNA-VSPCPWSD----EWMAITDDQEGWLE  335 (365)
T ss_dssp             -----------------------------------------EECSSCCTTCCC-EEECTTCT----TEEEEECSSSCEEE
T ss_pred             -----------------------------------------eecCCCCcccce-ecCCCcCC----CEEEEEEcCCCeEE
Confidence                                                     011233445677 666   55    78888876 49999


Q ss_pred             EEeCCCc
Q 016982          365 TWDLESQ  371 (379)
Q Consensus       365 iW~~~~~  371 (379)
                      +|++...
T Consensus       336 v~~~~~~  342 (365)
T 1jof_A          336 IYRWKDE  342 (365)
T ss_dssp             EEEEETT
T ss_pred             EEEEchh
Confidence            9998764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.7e-21  Score=166.81  Aligned_cols=226  Identities=8%  Similarity=0.032  Sum_probs=170.2

Q ss_pred             CcceeEEEeCCCCcEEEEE-ecCCeEEEEEecCCceEEEEEeccCCC---------ceEEEEEcCCCCEEEEEe--CCCe
Q 016982           10 AQCITCHAWSPDHAMVAFC-PNNNEVHIYKLIQEKWEKLHVLQKHDQ---------IVSGIDWSVRSNRIVTVS--HDRN   77 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~   77 (379)
                      ...+.+++|+|+|++++++ ..++.|.+||..++  +.+..+..+..         .+.+++|+|+++++++++  .++.
T Consensus        88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  165 (353)
T 3vgz_A           88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV  165 (353)
T ss_dssp             SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC--eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce
Confidence            4567889999999966554 55799999999887  44555544332         268899999999887766  4788


Q ss_pred             EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEee---cCCcCEEEEEEcC
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRK---RHDSSVTSVAWHP  154 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p  154 (379)
                      |.+||..+++....+  ..+...+..++|+|+++.+++++.++.+.+||..+++   ....+..   ++...+..++|+|
T Consensus       166 i~~~d~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~s~  240 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAI--QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK---ILSRKKLLDDGKEHFFINISLDT  240 (353)
T ss_dssp             EEEEETTTTEEEEEE--CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE---EEEEEECCCSSSCCCEEEEEEET
T ss_pred             EEEEcCCCCceEEEe--cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe---EEEEEEcCCCCCCcccceEEECC
Confidence            999999998865544  2245568899999999999999999999999988776   3333312   2456788999999


Q ss_pred             CCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEE
Q 016982          155 NNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVD  232 (379)
Q Consensus       155 ~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d  232 (379)
                      +++++++++. ++.|.+||+                  .+++.+..+....  ...++|+|+|+++++++ .++.|.+||
T Consensus       241 dg~~l~~~~~~~~~v~~~d~------------------~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          241 ARQRAFITDSKAAEVLVVDT------------------RNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             TTTEEEEEESSSSEEEEEET------------------TTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEC------------------CCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEE
Confidence            9987766655 589999996                  5566666665433  25799999999665554 789999999


Q ss_pred             CCCCCceeeeeeeecCCeeeEEEecCCcEEEE
Q 016982          233 DVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGV  264 (379)
Q Consensus       233 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  264 (379)
                      ..+++ .+..+.. ...+.+++|+|+|++|..
T Consensus       301 ~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          301 AKSYK-VVKTFDT-PTHPNSLALSADGKTLYV  330 (353)
T ss_dssp             TTTTE-EEEEEEC-CSEEEEEEECTTSCEEEE
T ss_pred             CCCCe-EEEEEec-CCCCCeEEEcCCCCEEEE
Confidence            98765 3345543 446789999999996653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.91  E-value=8e-21  Score=163.37  Aligned_cols=249  Identities=6%  Similarity=-0.055  Sum_probs=169.2

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEec-CCceEEEEEeccCCCceEEEEEcCCCCE--EEEEe-------------C
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLI-QEKWEKLHVLQKHDQIVSGIDWSVRSNR--IVTVS-------------H   74 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~-------------~   74 (379)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++...+.....+ +....++|+|+|++  +++++             .
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            468899999999999988887 99999997 6633222222212 23456899999984  44543             6


Q ss_pred             CCeEEEEecc-CCceeeeEEee--cCCCceeEEEECCCCCEEEEEeC-CCeEEEEEee-cCCceeEEEEEee-cCCcCEE
Q 016982           75 DRNSYVWNQE-GSEWVPTLVIL--RLNRAALCVQWSPKENKFAVGSG-AKTVCICYYE-QENNWWVSKLIRK-RHDSSVT  148 (379)
Q Consensus        75 d~~i~vw~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~-~~~~~~~~~~~~~-~~~~~v~  148 (379)
                      ++.+.+|++. +++....+...  .+...+.+++|+|+|++++++.. ++.|++|+++ +++.. ....+.. .+...+.
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE-LVGSVDAPDPGDHPR  196 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE-EEEEEECSSTTCCEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE-EeeeEecCCCCCCCC
Confidence            8899999997 45544333322  24567899999999998887764 6799999998 55421 1122211 2456789


Q ss_pred             EEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccce------EEEee----cCCc------ceEEEE
Q 016982          149 SVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ------ILQLD----LSFS------WAFGVK  211 (379)
Q Consensus       149 ~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~------~v~~~~  211 (379)
                      .++|+|+|+++++++. ++.+.+|++..                .+++.      +..+.    ++..      .+..++
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~----------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  260 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDP----------------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECT----------------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeC----------------CCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence            9999999998887765 78999998621                12222      11121    1121      578999


Q ss_pred             -ECCCCCEEEEEcCC-C-----eEEEEECCCCCceee---eeeeecCCeeeEEEec---CCcEEEEEe--CCCeEEEEec
Q 016982          212 -WSPSGNTLAYVGHN-S-----MIYFVDDVGPSPLAQ---NVAFRDLPLRDVLFVS---EKMVIGVGF--DCNPMVFAAD  276 (379)
Q Consensus       212 -~sp~~~~l~~~~~d-~-----~i~v~d~~~~~~~~~---~~~~~~~~i~~~~~s~---~~~~l~~~~--d~~~~i~~~~  276 (379)
                       |+|||++|++++.+ +     .|.+|++.....+..   ....+...+..++|+|   ||++|+++.  ++.+.+|..+
T Consensus       261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence             99999998876543 2     899999863232322   1222445578899999   899888553  3789999987


Q ss_pred             CC
Q 016982          277 ET  278 (379)
Q Consensus       277 ~~  278 (379)
                      ..
T Consensus       341 ~~  342 (365)
T 1jof_A          341 DE  342 (365)
T ss_dssp             TT
T ss_pred             hh
Confidence            65

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.6e-22  Score=189.74  Aligned_cols=237  Identities=13%  Similarity=0.109  Sum_probs=160.9

Q ss_pred             ceeEEEeCCCCcEEEEEec---------CCeEEEEEecCCceEEE--EEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982           12 CITCHAWSPDHAMVAFCPN---------NNEVHIYKLIQEKWEKL--HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~---------dg~i~i~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      .|.+++|||||++||+++.         ++.|++||+.+++  .+  ..+   ...+..++|||||+.|+++. ++.|++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~--~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~  134 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE--FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYL  134 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE--ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc--cccceec---CcccccceECCCCCEEEEEE-CCeEEE
Confidence            3899999999999998876         6899999999873  21  222   24688999999999999886 689999


Q ss_pred             EeccCCceeeeEEeecCCCc-----------------eeEEEECCCCCEEEEEeCCC-----------------------
Q 016982           81 WNQEGSEWVPTLVILRLNRA-----------------ALCVQWSPKENKFAVGSGAK-----------------------  120 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~~d~-----------------------  120 (379)
                      |++.+++..... ..++...                 ..+++|+|||+.|++++.|.                       
T Consensus       135 ~~~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          135 KQRPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             ESSTTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EeCCCCCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            999888643321 1122221                 25899999999999987652                       


Q ss_pred             -----------eEEEEEeecCCce---eEE--EEEeecCCcCEEEEEEcCCCcEEEEeeCC----CeEEEEe----cccc
Q 016982          121 -----------TVCICYYEQENNW---WVS--KLIRKRHDSSVTSVAWHPNNVFLATTSTD----GKCRVFS----TFIK  176 (379)
Q Consensus       121 -----------~v~i~~~~~~~~~---~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~~i~v~d----~~~~  176 (379)
                                 .|++||+.++...   .+.  ..+ ..|...+..++|+||++++++....    ..|.+||    +   
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~---  289 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI-ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDW---  289 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH-HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSS---
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccC-CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCC---
Confidence                       6778888765420   000  011 3577789999999998877764422    2477787    4   


Q ss_pred             ccccccccCCCccCCcccceEEEe----ecCCcceE-----EEEECCCCCEEEE--EcCCC--eEEEEECCCCCceeeee
Q 016982          177 GVDIKEKKEGTSSDTKFGEQILQL----DLSFSWAF-----GVKWSPSGNTLAY--VGHNS--MIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~sp~~~~l~~--~~~d~--~i~v~d~~~~~~~~~~~  243 (379)
                                     .++++...+    ..|...+.     .+.|+|||+.|+.  ...+|  .|.+||+.++.  ...+
T Consensus       290 ---------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~l  352 (719)
T 1z68_A          290 ---------------QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQI  352 (719)
T ss_dssp             ---------------SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEEC
T ss_pred             ---------------CCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEec
Confidence                           223322222    34555565     7899999996654  44454  67777876654  2455


Q ss_pred             eeecCCeeeEEEecCCcEEE-EEeC-----CCeEEEEecC
Q 016982          244 AFRDLPLRDVLFVSEKMVIG-VGFD-----CNPMVFAADE  277 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~-~~~d-----~~~~i~~~~~  277 (379)
                      ..+...+..+.++ +++.|+ ++.+     +...+|..+.
T Consensus       353 t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          353 TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            5555667787777 777665 4444     5677777653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=4.1e-21  Score=163.32  Aligned_cols=234  Identities=9%  Similarity=0.039  Sum_probs=168.5

Q ss_pred             ceeEEEeCCCCcEEE-EEecCCeEEEEEecCCceEEEEEecc-C----CCceEEEEEcCCCCEEEEEe------------
Q 016982           12 CITCHAWSPDHAMVA-FCPNNNEVHIYKLIQEKWEKLHVLQK-H----DQIVSGIDWSVRSNRIVTVS------------   73 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~------------   73 (379)
                      .+.+++|+|+|++++ ++..++.|.+||+.++  +.+..+.. +    ...+..++|+|+|++|++++            
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCC--CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccc
Confidence            588999999997664 5556789999999887  34444432 1    22567899999999998886            


Q ss_pred             CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEc
Q 016982           74 HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH  153 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  153 (379)
                      .++.|.+||+.+++....+.   ....+.+++|+|++++++++  ++.|.+||+.+++   ....+ ..+.. ...+.|+
T Consensus       113 ~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~---~~~~~-~~~~~-~~~~~~s  182 (337)
T 1pby_B          113 QPTRVALYDAETLSRRKAFE---APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT---LVEDK-PIQSW-EAETYAQ  182 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEE---CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE---EEEEE-CSTTT-TTTTBCC
T ss_pred             cCceEEEEECCCCcEEEEEe---CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCc---Eeeee-ecccc-CCCceeC
Confidence            57999999999887655443   24567889999999988888  5889999998776   33444 22220 0123789


Q ss_pred             CCCcEEEEeeCCC------------------------eEEEEeccccccccccccCCCccCCcccceE-EEeecCCcceE
Q 016982          154 PNNVFLATTSTDG------------------------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAF  208 (379)
Q Consensus       154 p~~~~l~~~~~d~------------------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~  208 (379)
                      |+++.++..+..+                        .|.+||+                  .+++.. ..+..+...+.
T Consensus       183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~------------------~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL------------------ETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET------------------TTCCEEEEEEEECSSCEE
T ss_pred             CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC------------------CCCCceEeecCCCCCcee
Confidence            9987665544332                        3577775                  333332 23344556688


Q ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      .++|+|+|++++++  ++.|++||+.+++. ...+. ....+.+++|+|+|++|+ ++.++.+.+|+.....
T Consensus       245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          245 STAVNPAKTRAFGA--YNVLESFDLEKNAS-IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EEEECTTSSEEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             eEEECCCCCEEEEe--CCeEEEEECCCCcC-cceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            99999999999888  79999999987653 34444 345678999999998666 6677899999987654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.89  E-value=3.5e-21  Score=180.76  Aligned_cols=243  Identities=13%  Similarity=0.142  Sum_probs=159.0

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc-----eEEEEEcCCCCEEEEEeCC---------
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI-----VSGIDWSVRSNRIVTVSHD---------   75 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------   75 (379)
                      .....+++|+|||++++++  |+.|++||+.++  +....+.+|...     ...++|||||++|+.++.+         
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            3457789999999999886  899999999988  445556666532     2348899999999998875         


Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE--------
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV--------  147 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v--------  147 (379)
                      +.+.+||+.+++...   +..+...+..++|||||+.||.+. ++.|++|++.++..   .+....++...+        
T Consensus        92 ~~~~~~d~~~~~~~~---l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~---~~lt~~g~~~~~~~g~~~~v  164 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWV  164 (740)
T ss_dssp             EEEEEEETTTTEECC---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHH
T ss_pred             eEEEEEECCCCcEEE---cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce---EEEcCCCCccceecCccccc
Confidence            567799999997443   245677899999999999999985 68999999887662   222112222222        


Q ss_pred             ---------EEEEEcCCCcEEEEeeCCCe-EEEEeccccccc---------cccccCCC--------ccCCcc---cc--
Q 016982          148 ---------TSVAWHPNNVFLATTSTDGK-CRVFSTFIKGVD---------IKEKKEGT--------SSDTKF---GE--  195 (379)
Q Consensus       148 ---------~~~~~~p~~~~l~~~~~d~~-i~v~d~~~~~~~---------~~~~~~~~--------~~~~~~---~~--  195 (379)
                               ..+.|+|||++|+..+.|.. +.+|++......         .+.+....        ..+..+   ++  
T Consensus       165 ~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          165 YEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA  244 (740)
T ss_dssp             HHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred             ccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence                     35899999999998764433 555544210000         00000000        000122   21  


Q ss_pred             eEEEee------cCCcceEEEEECCCCCEEEEEc----CCCeEEEEECCCCCc-----eeeee--eeecCCee-----eE
Q 016982          196 QILQLD------LSFSWAFGVKWSPSGNTLAYVG----HNSMIYFVDDVGPSP-----LAQNV--AFRDLPLR-----DV  253 (379)
Q Consensus       196 ~~~~~~------~~~~~v~~~~~sp~~~~l~~~~----~d~~i~v~d~~~~~~-----~~~~~--~~~~~~i~-----~~  253 (379)
                      ....+.      .+...+..++|+|||+.++...    .+..|++||+.+++.     ....+  ..+...+.     .+
T Consensus       245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p  324 (740)
T 4a5s_A          245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEP  324 (740)
T ss_dssp             CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCC
T ss_pred             eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCc
Confidence            222332      2667789999999999766543    234799999887651     11122  33444444     78


Q ss_pred             EEecCCcEEE
Q 016982          254 LFVSEKMVIG  263 (379)
Q Consensus       254 ~~s~~~~~l~  263 (379)
                      .|+|||+.|+
T Consensus       325 ~fspDG~~l~  334 (740)
T 4a5s_A          325 HFTLDGNSFY  334 (740)
T ss_dssp             EECTTSSEEE
T ss_pred             eEcCCCCEEE
Confidence            9999998665

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.88  E-value=2.2e-20  Score=173.60  Aligned_cols=245  Identities=10%  Similarity=-0.002  Sum_probs=170.7

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEE--ecCCeEEEEEecCCceEEEEEeccCCCceE---------EEEEc--CCCCE-EE
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFC--PNNNEVHIYKLIQEKWEKLHVLQKHDQIVS---------GIDWS--VRSNR-IV   70 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~   70 (379)
                      .+.+|...+..++|++++-+++..  +.++...||....+  .....+..|...+.         ...|+  |||+. |+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD--GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT--SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCC--CCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            456788999999999886666666  45788999996443  23455666666655         56665  99988 77


Q ss_pred             EEeC-CCeEEEEecc--C-CceeeeEEeec-----CCCceeEEEECCCCCEEEEEeCC----------CeEEEEEeec--
Q 016982           71 TVSH-DRNSYVWNQE--G-SEWVPTLVILR-----LNRAALCVQWSPKENKFAVGSGA----------KTVCICYYEQ--  129 (379)
Q Consensus        71 ~~~~-d~~i~vw~~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~v~i~~~~~--  129 (379)
                      .++. +..|.++++.  + ++. ..+  ..     +...+..++|+|||+.|++++.+          ..|++||+..  
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~-~~l--~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVP-RPL--TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCC-EEC--SCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             EEECCCCeEEEEcCCCCCCCCC-Eec--cCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence            6654 5667777776  3 432 222  23     45678899999999999998876          5788998877  


Q ss_pred             ----CCceeEEEEEee-cCCcCEEEEEEcCCCcEEEEeeCC--------CeEEEEeccccccccccccCCCccCCccc--
Q 016982          130 ----ENNWWVSKLIRK-RHDSSVTSVAWHPNNVFLATTSTD--------GKCRVFSTFIKGVDIKEKKEGTSSDTKFG--  194 (379)
Q Consensus       130 ----~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--  194 (379)
                          +.    .+.+ . .+...+..++|+|||++|+..+.+        ..|++||+.                 .++  
T Consensus       173 ~~~~~~----~~~l-~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~-----------------~~g~~  230 (662)
T 3azo_A          173 AADRSA----VREL-SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVT-----------------EDGRF  230 (662)
T ss_dssp             TTCGGG----SEES-SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEEC-----------------TTSCE
T ss_pred             cccCCc----eeEE-EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEEC-----------------CCCcc
Confidence                44    2344 4 455677889999999999987754        379999871                 123  


Q ss_pred             -ceEEEeecCCcceEEEEECCCCCEEEEEcCCC--eEEEEECCCCCceeeeeeeecCC--------eeeEEEecCCcEEE
Q 016982          195 -EQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS--MIYFVDDVGPSPLAQNVAFRDLP--------LRDVLFVSEKMVIG  263 (379)
Q Consensus       195 -~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~  263 (379)
                       +.......+...+..++|+|||+++++++.++  .|.+||+.++. .......+...        +..++|+|++++++
T Consensus       231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCCCEEEE
Confidence             33333344567899999999999888888888  67777765543 22222222211        56788999999888


Q ss_pred             EEeCCCeEEEEecC
Q 016982          264 VGFDCNPMVFAADE  277 (379)
Q Consensus       264 ~~~d~~~~i~~~~~  277 (379)
                      ++..+...+|..+.
T Consensus       310 ~~~~~~~~l~~~d~  323 (662)
T 3azo_A          310 VHGKGAAVLGILDP  323 (662)
T ss_dssp             EEBSSSCEEEEEET
T ss_pred             EEEcCccEEEEEEC
Confidence            55448888887653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=5.5e-21  Score=174.83  Aligned_cols=236  Identities=10%  Similarity=0.030  Sum_probs=161.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeC-CCeEEEEeccCCceeeeEEeecCC-CceeEEEECCCCCEEEEEeC---CCeEEEEEee
Q 016982           54 DQIVSGIDWSVRSNRIVTVSH-DRNSYVWNQEGSEWVPTLVILRLN-RAALCVQWSPKENKFAVGSG---AKTVCICYYE  128 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~  128 (379)
                      ..+|.+++|+|||++|++++. |+++.||++.+++...   +..+. ..+..++|+|| +.+++++.   +....+|.++
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence            457999999999999999886 9999999997776332   23444 68999999999 77777664   5567788776


Q ss_pred             c--CCceeEEEEEeecCCcCEEEEEEcCCCcE-EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982          129 Q--ENNWWVSKLIRKRHDSSVTSVAWHPNNVF-LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS  205 (379)
Q Consensus       129 ~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
                      .  ...   ...+  .........+|+|+++. +++.+.++.+.+||+                  .+++....... ..
T Consensus        97 ~~~~g~---~~~l--~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~------------------~~g~~~~l~~~-~~  152 (582)
T 3o4h_A           97 TSRPGE---EQRL--EAVKPMRILSGVDTGEAVVFTGATEDRVALYAL------------------DGGGLRELARL-PG  152 (582)
T ss_dssp             TTSTTC---CEEC--TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEE------------------ETTEEEEEEEE-SS
T ss_pred             ccCCCc---cccc--cCCCCceeeeeCCCCCeEEEEecCCCCceEEEc------------------cCCcEEEeecC-CC
Confidence            6  332   1222  22223446688888853 333344455569997                  44443333332 22


Q ss_pred             ceEEEEECCCCCEEEEEcCC----CeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE-eCC--CeEEEEecCC
Q 016982          206 WAFGVKWSPSGNTLAYVGHN----SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG-FDC--NPMVFAADET  278 (379)
Q Consensus       206 ~v~~~~~sp~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~d~--~~~i~~~~~~  278 (379)
                        .+++|||||++|++++.+    +.|++||+.+++.  ..+..+...+..++|||||+.|+++ .++  .+++|+.+..
T Consensus       153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~--~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL--RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC--EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc--eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence              789999999999988766    7899999887763  4566777889999999999999844 445  4556655443


Q ss_pred             CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeee-------eecccCCccc
Q 016982          279 GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIV-------PLREAGSSRI  351 (379)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-------~~~~~~~~~~  351 (379)
                      . ...   +                                           .+|...+..++       .|++|+    
T Consensus       229 ~-~~~---~-------------------------------------------~~~~~~~~~~~~~~~~~~~~spdg----  257 (582)
T 3o4h_A          229 S-VED---L-------------------------------------------ELPSKDFSSYRPTAITWLGYLPDG----  257 (582)
T ss_dssp             C-EEE---C-------------------------------------------CCSCSHHHHHCCSEEEEEEECTTS----
T ss_pred             c-EEE---c-------------------------------------------cCCCcChhhhhhccccceeEcCCC----
Confidence            2 111   0                                           23333333332       156555    


Q ss_pred             ceEEEeecCceEEEEeCCCcccc
Q 016982          352 TRFTTSGLDGKIVTWDLESQEDL  374 (379)
Q Consensus       352 ~~l~t~~~Dg~v~iW~~~~~~~~  374 (379)
                      .++++++.||.+++|++  ++.+
T Consensus       258 ~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          258 RLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             CEEEEEEETTEEEEEET--TEEE
T ss_pred             cEEEEEEcCCcEEEEEE--CCee
Confidence            89999999999999998  5544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.87  E-value=8.1e-19  Score=145.66  Aligned_cols=240  Identities=14%  Similarity=0.110  Sum_probs=174.0

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec------cCCCceEEEEE-cCCCCEEEEEeC-CCeEE
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ------KHDQIVSGIDW-SVRSNRIVTVSH-DRNSY   79 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~~~~~-d~~i~   79 (379)
                      ++-..+.+++++++++++++...++.|.+||....   .+..+.      ++...+..+++ .++++++++... ++.|.
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            34467899999999998888888899999998743   344443      23456889999 467766665533 78999


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcE
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~  158 (379)
                      +|| .+++....+. ..+...+..++++|+|+++++...++.|.+|+....    ....+. ..+...+..++++|++++
T Consensus       104 ~~d-~~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----~~~~~~~~~~~~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          104 IYN-QYGQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----VLHKFGCSKHLEFPNGVVVNDKQEI  177 (286)
T ss_dssp             EEC-TTSCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC----EEEEEECTTTCSSEEEEEECSSSEE
T ss_pred             EEC-CCCcEEEEec-CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC----EEEEeCCCCccCCcEEEEECCCCCE
Confidence            999 4555443331 223457899999999998887777899999985432    233331 134457899999999998


Q ss_pred             EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC--CcceEEEEECCCCCEEEEEcCCC-eEEEEECCC
Q 016982          159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS--FSWAFGVKWSPSGNTLAYVGHNS-MIYFVDDVG  235 (379)
Q Consensus       159 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~~d~-~i~v~d~~~  235 (379)
                      +++...++.|++||.                   .++.+..+..+  ...+..++++|+|+++++...++ .|.+||...
T Consensus       178 ~v~~~~~~~i~~~~~-------------------~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g  238 (286)
T 1q7f_A          178 FISDNRAHCVKVFNY-------------------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG  238 (286)
T ss_dssp             EEEEGGGTEEEEEET-------------------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS
T ss_pred             EEEECCCCEEEEEcC-------------------CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC
Confidence            888888999999985                   34445555332  35688999999999888887776 999999543


Q ss_pred             CCceeeeeeeec--CCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          236 PSPLAQNVAFRD--LPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       236 ~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                       . .+..+..+.  ..+.+++++|+|++++++.++.+.+|....
T Consensus       239 -~-~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          239 -Q-LISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             -C-EEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             -C-EEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence             3 334554432  236789999999988888888999997653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.87  E-value=3.3e-20  Score=161.41  Aligned_cols=220  Identities=12%  Similarity=0.094  Sum_probs=147.0

Q ss_pred             eeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCc-eEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           13 ITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQI-VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      +..++|+|||++|++....   ..|++|++.++  +.. .+..+... ...+.|+|+|++|+.++.++.|.+||+.+++.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QAV-QLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EEE-ECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cEE-EeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc
Confidence            7788999999998877543   47888898886  333 33333333 33488999999999999999999999998875


Q ss_pred             eeeEEeecCCCceeE-------------------EEECCCCCEEEEE-----eCCCeEEEEEeecCCceeEEEEEeecCC
Q 016982           89 VPTLVILRLNRAALC-------------------VQWSPKENKFAVG-----SGAKTVCICYYEQENNWWVSKLIRKRHD  144 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~v~i~~~~~~~~~~~~~~~~~~~~  144 (379)
                      .....  .+......                   +.|+|+++.++..     ..+..|.+||+.++.    ...+ ..+.
T Consensus       115 ~~~~~--~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~----~~~~-~~~~  187 (396)
T 3c5m_A          115 QVIYT--VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE----LEVI-HQDT  187 (396)
T ss_dssp             EEEEE--CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC----EEEE-EEES
T ss_pred             EEEEe--cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc----EEee-ccCC
Confidence            44432  12222222                   4578888877655     346678888887766    2333 3456


Q ss_pred             cCEEEEEEcC-CCcEEEEeeCC------CeEEEEeccccccccccccCCCccCCcccceEEEeecC--CcceEEEEECCC
Q 016982          145 SSVTSVAWHP-NNVFLATTSTD------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS--FSWAFGVKWSPS  215 (379)
Q Consensus       145 ~~v~~~~~~p-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~  215 (379)
                      ..+..+.|+| +++.|+..+.+      ..|.+||+                  ..++ ...+..+  ...+..++|+|+
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~------------------~~~~-~~~l~~~~~~~~~~~~~~spd  248 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNE------------------DGSN-VRKIKEHAEGESCTHEFWIPD  248 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEET------------------TSCC-CEESSCCCTTEEEEEEEECTT
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEEC------------------CCCc-eeEeeccCCCccccceEECCC
Confidence            7789999999 78877766543      35777775                  1122 2222222  235788999999


Q ss_pred             CCEEEEEcCC-----CeEEEEECCCCCceeeeeeeecCCeeeEEEec-CCcEEEEE
Q 016982          216 GNTLAYVGHN-----SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS-EKMVIGVG  265 (379)
Q Consensus       216 ~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~  265 (379)
                      |++|+..+.+     +.|++||+.++..  ..+.... ... +.|+| ||++++.+
T Consensus       249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~-~~~-~~~s~~dg~~l~~~  300 (396)
T 3c5m_A          249 GSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMP-PCS-HLMSNFDGSLMVGD  300 (396)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECC-SEE-EEEECSSSSEEEEE
T ss_pred             CCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCC-CCC-CCccCCCCceEEEe
Confidence            9988776543     4599999987653  2222111 223 89999 99988753

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.85  E-value=4.3e-18  Score=145.36  Aligned_cols=218  Identities=14%  Similarity=0.136  Sum_probs=147.6

Q ss_pred             cceeEEEeCCCCcEEEEEe---------cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC---C--
Q 016982           11 QCITCHAWSPDHAMVAFCP---------NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD---R--   76 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~--   76 (379)
                      ..+..+++  ||++++...         .++.|++|++.+++..   .+    ..+..++|+|||++|+.++.+   +  
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l----~~~~~~~~SpDg~~la~~~~~~~~~~~   85 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---FI----ENATMPRISPDGKKIAFMRANEEKKVS   85 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---EE----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---Ec----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence            46778888  899887753         2568999999887432   23    457889999999999887653   3  


Q ss_pred             eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC---------------------------CeEEEEEeec
Q 016982           77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA---------------------------KTVCICYYEQ  129 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------~~v~i~~~~~  129 (379)
                      .|.+|++.+++......   ... +..+.|+|+|+.|+.++.+                           ..|.+||+.+
T Consensus        86 ~l~~~~~~~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           86 EIWVADLETLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             EEEEEETTTTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             eEEEEECCCCceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            38888888877544332   233 8999999999998888642                           4677888776


Q ss_pred             CCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC-------eEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982          130 ENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG-------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL  202 (379)
Q Consensus       130 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (379)
                      +.   ..+.+ .. . .+..++|+|++ +++++..+.       ...||.+                  ..+ ....+..
T Consensus       162 ~~---~~~~l-~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~------------------d~~-~~~~l~~  215 (347)
T 2gop_A          162 EE---VIEEF-EK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIW------------------EDG-KEEKMFE  215 (347)
T ss_dssp             TE---EEEEE-EE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEE------------------ETT-EEEEEEE
T ss_pred             Ce---EEeee-cC-C-CcccccCCCCe-EEEEEecccccccccccccEEEe------------------CCC-ceEEecc
Confidence            65   21334 22 3 77899999999 777776542       4566764                  112 2233333


Q ss_pred             CCcceEEEEECCCCCEEEEEcCC--------CeEEEEECCCCCceeeeeeeecCCeee-EEEecCCcEEE-EEeCCCeEE
Q 016982          203 SFSWAFGVKWSPSGNTLAYVGHN--------SMIYFVDDVGPSPLAQNVAFRDLPLRD-VLFVSEKMVIG-VGFDCNPMV  272 (379)
Q Consensus       203 ~~~~v~~~~~sp~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~-~~~d~~~~i  272 (379)
                      + ..+..+  +|+|++|+..+.+        ..|.+||  ++. .......+...+.. +.|+ ++ +++ ++.++...+
T Consensus       216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l  287 (347)
T 2gop_A          216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL  287 (347)
T ss_dssp             E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred             C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence            3 444444  9999998877643        4688888  332 33334445567776 8999 88 665 567778888


Q ss_pred             EEec
Q 016982          273 FAAD  276 (379)
Q Consensus       273 ~~~~  276 (379)
                      | .+
T Consensus       288 ~-~~  290 (347)
T 2gop_A          288 Y-IW  290 (347)
T ss_dssp             E-EE
T ss_pred             E-Ec
Confidence            8 76

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=8.2e-19  Score=149.86  Aligned_cols=203  Identities=8%  Similarity=0.015  Sum_probs=147.5

Q ss_pred             ceeEEEeCCCCcEEE-EEecCCeEEEEEecCCceEEEEEeccC------CCceEEEEEcCCCCEEEEEeCC---------
Q 016982           12 CITCHAWSPDHAMVA-FCPNNNEVHIYKLIQEKWEKLHVLQKH------DQIVSGIDWSVRSNRIVTVSHD---------   75 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d---------   75 (379)
                      .+..++|+|+|++++ ++..++.|.+||+.++  +....+..+      ...+..++|+|+|++|++++.+         
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  121 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV  121 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC--cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccc
Confidence            578999999998665 4456899999999887  444444422      2237889999999999988865         


Q ss_pred             ---CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec----------
Q 016982           76 ---RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR----------  142 (379)
Q Consensus        76 ---~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~----------  142 (379)
                         +.|.+||+.+++.........+...+.+++|+|+|+ +++++.  .|.+||..+++.   ...+...          
T Consensus       122 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~  195 (349)
T 1jmx_B          122 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKY---TVALPLRNWNRKGYSAP  195 (349)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCE---EEEECSTTCCCTTBCCC
T ss_pred             cCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCce---eccccccccCCccccCc
Confidence               899999998865333333234455789999999999 555543  499998876652   2222111          


Q ss_pred             ---------------------------------------------------------CCcCEEEEEEcC-CCcEEEEeeC
Q 016982          143 ---------------------------------------------------------HDSSVTSVAWHP-NNVFLATTST  164 (379)
Q Consensus       143 ---------------------------------------------------------~~~~v~~~~~~p-~~~~l~~~~~  164 (379)
                                                                               +...+..++|+| ++++++++  
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--  273 (349)
T 1jmx_B          196 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--  273 (349)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--
T ss_pred             cceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--
Confidence                                                                     112456778889 99988888  


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      ++.|.+||+                  .+++.+..+.. ...+.+++|+|+|++|++++.++.|++||+.+.+. +..+.
T Consensus       274 ~~~v~~~d~------------------~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~-~~~~~  333 (349)
T 1jmx_B          274 LNRLAKYDL------------------KQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK-VKNIK  333 (349)
T ss_dssp             ESEEEEEET------------------TTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE-EEEEE
T ss_pred             cCeEEEEEC------------------ccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccce-eeeee
Confidence            889999997                  55666666654 33477899999999998888899999999987653 34444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.84  E-value=9.7e-18  Score=139.13  Aligned_cols=245  Identities=9%  Similarity=0.037  Sum_probs=167.3

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEee----cCCCceeEEEE-CCCCCEEEEEeC-CCeEEEE
Q 016982           52 KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVIL----RLNRAALCVQW-SPKENKFAVGSG-AKTVCIC  125 (379)
Q Consensus        52 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~----~~~~~v~~~~~-~~~~~~l~~~~~-d~~v~i~  125 (379)
                      ++-..+.+++++++++++++...++.|.+||.. ++....+...    .+...+..+++ .++++++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            344578899999999988888888999999987 4433333211    12346789999 567776666543 7899999


Q ss_pred             EeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee--cC
Q 016982          126 YYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD--LS  203 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  203 (379)
                      + ..+.   ....+...+...+.+++++|+++++++...++.|.+||.                   .++.+..+.  .+
T Consensus       106 d-~~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-------------------~g~~~~~~~~~~~  162 (286)
T 1q7f_A          106 N-QYGQ---FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-------------------NGNVLHKFGCSKH  162 (286)
T ss_dssp             C-TTSC---EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-------------------TSCEEEEEECTTT
T ss_pred             C-CCCc---EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-------------------CCCEEEEeCCCCc
Confidence            8 3333   233342334467899999999998888778899999984                   244444443  33


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee--cCCeeeEEEecCCcEEEEEeC-C-CeEEEEecCCC
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR--DLPLRDVLFVSEKMVIGVGFD-C-NPMVFAADETG  279 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~d-~-~~~i~~~~~~~  279 (379)
                      ...+..++++|+|+++++...++.|++||... . .+..+..+  ...+..++++++|+++++... + .+.+|+.+...
T Consensus       163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~  240 (286)
T 1q7f_A          163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQL  240 (286)
T ss_dssp             CSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCE
T ss_pred             cCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCE
Confidence            45689999999999888878899999999754 2 33444332  246789999999998886654 3 78888743321


Q ss_pred             cEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeec
Q 016982          280 IWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGL  359 (379)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~  359 (379)
                      ...+ .   .                                         ......+.+++ +++++    +++++ +.
T Consensus       241 ~~~~-~---~-----------------------------------------~~~~~~~~~i~-~~~~g----~l~vs-~~  269 (286)
T 1q7f_A          241 ISAL-E---S-----------------------------------------KVKHAQCFDVA-LMDDG----SVVLA-SK  269 (286)
T ss_dssp             EEEE-E---E-----------------------------------------SSCCSCEEEEE-EETTT----EEEEE-ET
T ss_pred             EEEE-c---c-----------------------------------------cCCCCcceeEE-ECCCC----cEEEE-CC
Confidence            1111 0   0                                         01222466788 66665    77777 57


Q ss_pred             CceEEEEeCCCccc
Q 016982          360 DGKIVTWDLESQED  373 (379)
Q Consensus       360 Dg~v~iW~~~~~~~  373 (379)
                      |++|++|++.....
T Consensus       270 ~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          270 DYRLYIYRYVQLAP  283 (286)
T ss_dssp             TTEEEEEECSCCCC
T ss_pred             CCeEEEEEcccccc
Confidence            99999999876443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=3.4e-18  Score=160.47  Aligned_cols=237  Identities=11%  Similarity=0.074  Sum_probs=154.2

Q ss_pred             eEEEeCCCCcEEEEEecC---------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982           14 TCHAWSPDHAMVAFCPNN---------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ..++|||||++|++++.+         +.+.+||+.++  + ...+..|...+..++|||||+.|+.+. ++.|++|++.
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~--~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~  140 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEP  140 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC--c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECC
Confidence            458899999999998875         56779999997  2 345677788899999999999999885 6899999998


Q ss_pred             CCceeeeEEeecCCCc-----------------eeEEEECCCCCEEEEEeCCC---------------------------
Q 016982           85 GSEWVPTLVILRLNRA-----------------ALCVQWSPKENKFAVGSGAK---------------------------  120 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~~d~---------------------------  120 (379)
                      +++.... ...++...                 ...+.|||||+.|+.++.|.                           
T Consensus       141 ~~~~~~l-t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp  219 (740)
T 4a5s_A          141 NLPSYRI-TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYP  219 (740)
T ss_dssp             TSCCEEC-CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred             CCceEEE-cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCC
Confidence            8763322 11222221                 23589999999999875322                           


Q ss_pred             ---------eEEEEEeec---CCceeEEEEEee-----cCCcCEEEEEEcCCCcEEEEeeC----CCeEEEEeccccccc
Q 016982          121 ---------TVCICYYEQ---ENNWWVSKLIRK-----RHDSSVTSVAWHPNNVFLATTST----DGKCRVFSTFIKGVD  179 (379)
Q Consensus       121 ---------~v~i~~~~~---~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~----d~~i~v~d~~~~~~~  179 (379)
                               .|++||+.+   +......+.. .     ++...+..++|+|||+.++....    +..|.+||+.     
T Consensus       220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~-----  293 (740)
T 4a5s_A          220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQIT-APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD-----  293 (740)
T ss_dssp             BTTSCCCEEEEEEEETTSCCSSSCCCEEEEC-CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE-----
T ss_pred             CCcCcCCeeEEEEEECCCCCCCCcceEEEec-CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC-----
Confidence                     466777776   5210122221 1     37778999999999997665433    3369999872     


Q ss_pred             cccccCCCccCCcccc----eE--EEe--ecCCcceE-----EEEECCCCCEEE-EEc-CC--CeEEEEECCCCCceeee
Q 016982          180 IKEKKEGTSSDTKFGE----QI--LQL--DLSFSWAF-----GVKWSPSGNTLA-YVG-HN--SMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~----~~--~~~--~~~~~~v~-----~~~~sp~~~~l~-~~~-~d--~~i~v~d~~~~~~~~~~  242 (379)
                                   +++    +.  ..+  ..+...+.     .++|+|||+.|+ ..+ .+  ..|++||+.++..  ..
T Consensus       294 -------------tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~  358 (740)
T 4a5s_A          294 -------------ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TF  358 (740)
T ss_dssp             -------------TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EE
T ss_pred             -------------CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--Ee
Confidence                         222    11  111  33444443     789999999877 555 33  4688889876543  34


Q ss_pred             eeeecCCeeeEEEecCCcEEE-EEeC-----CCeEEEEecC
Q 016982          243 VAFRDLPLRDVLFVSEKMVIG-VGFD-----CNPMVFAADE  277 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~~~~l~-~~~d-----~~~~i~~~~~  277 (379)
                      +......+..+.+ +|++.|+ .+..     +...+|..+-
T Consensus       359 lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          359 ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEEC
Confidence            4434455655542 4466555 4332     3455655443

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.84  E-value=2.2e-18  Score=160.07  Aligned_cols=233  Identities=10%  Similarity=-0.032  Sum_probs=154.2

Q ss_pred             EEEeC--CCCcE-EEEEec-CCeEEEEEec--C-CceEEEEEecc-----CCCceEEEEEcCCCCEEEEEeCC-------
Q 016982           15 CHAWS--PDHAM-VAFCPN-NNEVHIYKLI--Q-EKWEKLHVLQK-----HDQIVSGIDWSVRSNRIVTVSHD-------   75 (379)
Q Consensus        15 ~~~~s--~~~~~-l~~~~~-dg~i~i~~~~--~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-------   75 (379)
                      ...|+  |||+. |+.++. +..|+++++.  + +.   ...+..     |...+..++|+|||+.|++++.+       
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~---~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~  157 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV---PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS  157 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC---CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC---CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence            45555  99998 777654 5667777765  2 42   233444     56788999999999999988876       


Q ss_pred             ---CeEEEEeccC------CceeeeEEee-cCCCceeEEEECCCCCEEEEEeCC--------CeEEEEEee-cCCceeEE
Q 016982           76 ---RNSYVWNQEG------SEWVPTLVIL-RLNRAALCVQWSPKENKFAVGSGA--------KTVCICYYE-QENNWWVS  136 (379)
Q Consensus        76 ---~~i~vw~~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------~~v~i~~~~-~~~~~~~~  136 (379)
                         ..|++||+.+      ++..   .+. .+...+..++|+|||++|+.++.+        ..|++||+. ++......
T Consensus       158 ~~~~~i~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          158 DVRRFLAAVPLDGSAAADRSAVR---ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             CEEEEEEEEETTSTTTTCGGGSE---ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             CceeEEEEEECCCCccccCCcee---EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccE
Confidence               5799999988      5522   223 455678889999999999988755        379999998 45211123


Q ss_pred             EEEeecCCcCEEEEEEcCCCcEEEEeeCCC--eEEEEeccccccccccccCCCccCCcccceEEEeecCCc--------c
Q 016982          137 KLIRKRHDSSVTSVAWHPNNVFLATTSTDG--KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS--------W  206 (379)
Q Consensus       137 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  206 (379)
                      ... ..+...+..++|+|||++++++..++  .|.+||+                  ..++.......+..        .
T Consensus       235 ~l~-~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~------------------~~~~~~~l~~~~~~~~~p~w~~~  295 (662)
T 3azo_A          235 TLL-GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP------------------ATGAATQLCRREEEFAGPLWTPG  295 (662)
T ss_dssp             EEE-EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT------------------TTCCEEESSCCSSBSSCCCCSTT
T ss_pred             EeC-CCCCceEcceEECCCCeEEEEECCCCCeEEEEEEC------------------CCCceeecccccccccCcccccc
Confidence            333 55678899999999999888887888  4555543                  12222221221111        1


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEE--ECCCCCceeeeeeeecCCeeeEEEecCCc--EEEEE-eCCCeEEEEec
Q 016982          207 AFGVKWSPSGNTLAYVGHNSMIYFV--DDVGPSPLAQNVAFRDLPLRDVLFVSEKM--VIGVG-FDCNPMVFAAD  276 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~~d~~i~v~--d~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~-~d~~~~i~~~~  276 (379)
                      +..++|+|+++++++++. +.+++|  |+.++.  .+.+..+...+..+ |++++.  +++++ .+....+|..+
T Consensus       296 ~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d  366 (662)
T 3azo_A          296 MRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELD  366 (662)
T ss_dssp             CCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             CceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEE
Confidence            457899999999999988 988888  554443  46666666666666 144444  33333 34444566554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=6.8e-18  Score=142.86  Aligned_cols=242  Identities=12%  Similarity=0.053  Sum_probs=171.2

Q ss_pred             CcceeEEEeCCCCcEEEEEecC------------------------CeEEEEEecCCceEEEEEec-cCCCceEEEEEcC
Q 016982           10 AQCITCHAWSPDHAMVAFCPNN------------------------NEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSV   64 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~d------------------------g~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~   64 (379)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++  ....+. ++-.....++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE--ILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC--EEEEECTTTCSSEEEEEECT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe--EEeccCCCccCCceEEEECC
Confidence            3579999999999999888766                        479999998763  344433 3445788999999


Q ss_pred             CCCEEEEEeCCCeEEEEeccCCc-eeeeEEe-------ecCCCceeEEEECC-CCCEEEEEe-CCCeEEEEEeecCCcee
Q 016982           65 RSNRIVTVSHDRNSYVWNQEGSE-WVPTLVI-------LRLNRAALCVQWSP-KENKFAVGS-GAKTVCICYYEQENNWW  134 (379)
Q Consensus        65 ~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~-------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~v~i~~~~~~~~~~  134 (379)
                      +|+++++...++.|++|+..... .+..+..       ..+-..+..++++| +++++++.+ .++.|++|+. .+.   
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~---  176 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK---  176 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC---
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC---
Confidence            99988888888999999986542 2222210       12234688999999 788887776 6899999983 333   


Q ss_pred             EEEEEee---------cCCcCEEEEEEcCC-CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee--c
Q 016982          135 VSKLIRK---------RHDSSVTSVAWHPN-NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD--L  202 (379)
Q Consensus       135 ~~~~~~~---------~~~~~v~~~~~~p~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  202 (379)
                      ....+..         .+......++++|+ ++++++...++.|++|+.                  .+++.+..+.  .
T Consensus       177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~------------------~~G~~~~~~~~~~  238 (329)
T 3fvz_A          177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT------------------DTKEFVREIKHAS  238 (329)
T ss_dssp             EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET------------------TTCCEEEEECCTT
T ss_pred             EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC------------------CCCcEEEEEeccc
Confidence            2333311         12234789999998 788888888999999996                  4567776663  3


Q ss_pred             CCcceEEEEECCCCCEEEEE-------cCCCeEEEEECCCCCceeeeee---eecCCeeeEEEecCCcEEEEE-eCCCeE
Q 016982          203 SFSWAFGVKWSPSGNTLAYV-------GHNSMIYFVDDVGPSPLAQNVA---FRDLPLRDVLFVSEKMVIGVG-FDCNPM  271 (379)
Q Consensus       203 ~~~~v~~~~~sp~~~~l~~~-------~~d~~i~v~d~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~-~d~~~~  271 (379)
                      +...+..++|+| +..+++.       ..+..|++||..+++ ++..+.   .+...+.+++++|+|.++++. .++.|.
T Consensus       239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            455688999999 4333333       345589999988876 445542   445668899999999776644 566888


Q ss_pred             EEEecC
Q 016982          272 VFAADE  277 (379)
Q Consensus       272 i~~~~~  277 (379)
                      +|+.+.
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            877553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=5.5e-19  Score=153.35  Aligned_cols=238  Identities=14%  Similarity=0.096  Sum_probs=156.2

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEE--EcCCCCEEEEEe-------------
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGID--WSVRSNRIVTVS-------------   73 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~-------------   73 (379)
                      +...+..++|+|||+.|++++.++.|++||+.+++...+  +..+...+....  ++|++++++...             
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~  156 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV--YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK  156 (388)
T ss_dssp             SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred             CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee--eechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence            344555778999999999999999999999998843333  344444444333  489998887432             


Q ss_pred             ---------CCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCC------eEEEEEeecCCceeEEE
Q 016982           74 ---------HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAK------TVCICYYEQENNWWVSK  137 (379)
Q Consensus        74 ---------~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~------~v~i~~~~~~~~~~~~~  137 (379)
                               .+..|.+||+.+++....   ..+...+..+.|+| +|+.|+....++      .|.++|.....    .+
T Consensus       157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l---~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~  229 (388)
T 3pe7_A          157 KFHEFYFTKPCCRLMRVDLKTGESTVI---LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----MR  229 (388)
T ss_dssp             HHHHHGGGCCCEEEEEEETTTCCEEEE---EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----CE
T ss_pred             hhhhhhccCCcceEEEEECCCCceEEe---ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----eE
Confidence                     346799999998874333   34566789999999 999998877532      56666655544    23


Q ss_pred             EEeecCC--cCEEEEEEcCCCcEEEEeeC-CC----eEEEEeccccccccccccCCCccCCcccc--eEEEeecCCcc--
Q 016982          138 LIRKRHD--SSVTSVAWHPNNVFLATTST-DG----KCRVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQLDLSFSW--  206 (379)
Q Consensus       138 ~~~~~~~--~~v~~~~~~p~~~~l~~~~~-d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--  206 (379)
                      .+ ..+.  ..+..++|+|||+.|+..+. ++    .|.+||+                  .+++  .+..+..+...  
T Consensus       230 ~l-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~------------------~~g~~~~l~~~~~~~~~~~  290 (388)
T 3pe7_A          230 KV-KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP------------------ETLENRQLTSMPACSHLMS  290 (388)
T ss_dssp             ES-CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT------------------TTCCEEEEEEECCEEEEEE
T ss_pred             Ee-eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec------------------CCCceEEEEcCCCceeeee
Confidence            33 2333  35778999999987765443 22    3999987                  3333  22222221000  


Q ss_pred             -eEEEEECCCCCEEEEE---------cCCCeEEEEECCCCCceeeeeeeecC-----------CeeeEEEecCCcEEEEE
Q 016982          207 -AFGVKWSPSGNTLAYV---------GHNSMIYFVDDVGPSPLAQNVAFRDL-----------PLRDVLFVSEKMVIGVG  265 (379)
Q Consensus       207 -v~~~~~sp~~~~l~~~---------~~d~~i~v~d~~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~  265 (379)
                       ...+.|+|||+.|+..         ..+..|++||+.+++ . ..+..+..           .+.+++|+|||+.|+..
T Consensus       291 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~  368 (388)
T 3pe7_A          291 NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT-Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT  368 (388)
T ss_dssp             CTTSSEEEEEECCC------------CCCCEEEEEETTTTE-E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc-e-EEeccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence             1123799999988754         456689999988764 2 44554544           57889999999988733


Q ss_pred             --eCCCeEEEEec
Q 016982          266 --FDCNPMVFAAD  276 (379)
Q Consensus       266 --~d~~~~i~~~~  276 (379)
                        .++...+|..+
T Consensus       369 s~~~g~~~l~~~~  381 (388)
T 3pe7_A          369 SDVHGKPALYLAT  381 (388)
T ss_dssp             ECTTSSCEEEEEE
T ss_pred             ecCCCceeEEEEE
Confidence              35566666543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.83  E-value=2.3e-17  Score=137.60  Aligned_cols=240  Identities=10%  Similarity=0.045  Sum_probs=166.0

Q ss_pred             eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      +..+.....+++|+|+|+ +++++..++.|..|+..++    ...+..+...+.+++++|+|+++++...++.|.+||..
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            334556778999999998 7788888999999999875    34445566788999999999988777677899999998


Q ss_pred             CCceeeeEEeec--CCCceeEEEECCCCCEEEE----EeC-----------CCeEEEEEeecCCceeEEEEEeecCCcCE
Q 016982           85 GSEWVPTLVILR--LNRAALCVQWSPKENKFAV----GSG-----------AKTVCICYYEQENNWWVSKLIRKRHDSSV  147 (379)
Q Consensus        85 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~----~~~-----------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v  147 (379)
                      +++.........  ....+..++++|+|+++++    ++.           .+.-.||.++....   ...+ ..+....
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~---~~~~-~~~~~~~  174 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT---LSAP-IRDRVKP  174 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC---EEEE-ECCCSSE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC---EEEe-ecCCCCC
Confidence            876443321111  1234678999999998887    321           01124455544321   2333 4556677


Q ss_pred             EEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccce---EEEeecCCcceEEEEECCCCCEEEEEcC
Q 016982          148 TSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ---ILQLDLSFSWAFGVKWSPSGNTLAYVGH  224 (379)
Q Consensus       148 ~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~l~~~~~  224 (379)
                      ..++|+|+++.+++.+.++.|.+|++.                 ..+..   ...+..+...+..++++++|+++++.  
T Consensus       175 ~gi~~s~dg~~lv~~~~~~~i~~~~~~-----------------~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--  235 (296)
T 3e5z_A          175 NGLAFLPSGNLLVSDTGDNATHRYCLN-----------------ARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--  235 (296)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEEEEC-----------------SSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--
T ss_pred             ccEEECCCCCEEEEeCCCCeEEEEEEC-----------------CCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--
Confidence            899999999988777778999999972                 12222   12222344556789999999977665  


Q ss_pred             CCeEEEEECCCCCceeeeeeeecCCeeeEEE-ecCCcEEEEEeCCCeEEEEe
Q 016982          225 NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLF-VSEKMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       225 d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~d~~~~i~~~  275 (379)
                      ++.|.+||.. ++ .+..+..+.. +.+++| +|+++.|..+..+.+.-+..
T Consensus       236 ~~~v~~~~~~-g~-~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~  284 (296)
T 3e5z_A          236 GDGVHVLTPD-GD-ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIET  284 (296)
T ss_dssp             TTEEEEECTT-SC-EEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEEC
T ss_pred             CCeEEEECCC-CC-EEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEc
Confidence            7899999976 33 4456665555 899999 58888777666655444443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=1.7e-17  Score=142.00  Aligned_cols=276  Identities=11%  Similarity=0.050  Sum_probs=181.0

Q ss_pred             CCCcEEEEEe------cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEec
Q 016982           20 PDHAMVAFCP------NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------HDRNSYVWNQ   83 (379)
Q Consensus        20 ~~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~vw~~   83 (379)
                      ++++++++..      .|+.|++||..++  +.+..+..+..+  .++|+|++++++++.          .++.|.+||.
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNG--KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTC--CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCC--eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            3666666543      3679999998887  456667766555  899999999998876          2567999999


Q ss_pred             cCCceeeeEEeec----CCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEE-EeecCCcCEEEEEEcCCC
Q 016982           84 EGSEWVPTLVILR----LNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKL-IRKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        84 ~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~  156 (379)
                      .+.+....+....    +......++++|+|++|+++..  ++.|.+||+.+.+   .... +  .. .....+.+.|++
T Consensus        89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~---~~~~~i--~~-~~~~~v~~~p~~  162 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD---YVEDVT--AA-AGCWSVIPQPNR  162 (361)
T ss_dssp             TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE---EEEEEG--GG-TTEEEEEECTTS
T ss_pred             cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc---EEEEEe--cC-CCcceeEEcCCC
Confidence            9888766664321    2245678999999999998874  5789999998875   3444 3  12 222335677766


Q ss_pred             -cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE------EeecCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982          157 -VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL------QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY  229 (379)
Q Consensus       157 -~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~  229 (379)
                       ..+++.+.||.+.+|+..                 ..++...      .+.....+ ..+.++|++..++..+.++.+.
T Consensus       163 ~~~~~~~~~dg~~~~v~~~-----------------~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~  224 (361)
T 2oiz_A          163 PRSFMTICGDGGLLTINLG-----------------EDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVY  224 (361)
T ss_dssp             SSEEEEEETTSSEEEEEEC-----------------TTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEE
T ss_pred             CeeEEEECCCCcEEEEEEC-----------------CCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEE
Confidence             677888899999999862                 1122221      11121222 1334467777777778899999


Q ss_pred             EEECCCCCcee-eeeee----------ecCCeeeEEEecCCcEEEE-Ee-----------CCCeEEEEecCCCcEEEEEE
Q 016982          230 FVDDVGPSPLA-QNVAF----------RDLPLRDVLFVSEKMVIGV-GF-----------DCNPMVFAADETGIWTFIKF  286 (379)
Q Consensus       230 v~d~~~~~~~~-~~~~~----------~~~~i~~~~~s~~~~~l~~-~~-----------d~~~~i~~~~~~~~~~~~~~  286 (379)
                      ++|+....... ..+..          .......++|+|+++.+.. ..           ...+.+|+....   +....
T Consensus       225 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~  301 (361)
T 2oiz_A          225 SADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVAR  301 (361)
T ss_dssp             EEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEE
T ss_pred             EEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEE
Confidence            99987554221 11110          0111234789999776653 32           225666665443   22221


Q ss_pred             ecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEE
Q 016982          287 LDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTW  366 (379)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW  366 (379)
                      +                                           ..|.  +.+++ +++++    ++|++++. +.|.+|
T Consensus       302 i-------------------------------------------~~~~--p~~ia-~spdg----~~l~v~n~-~~v~v~  330 (361)
T 2oiz_A          302 I-------------------------------------------PGRD--ALSMT-IDQQR----NLMLTLDG-GNVNVY  330 (361)
T ss_dssp             E-------------------------------------------ECTT--CCEEE-EETTT----TEEEEECS-SCEEEE
T ss_pred             E-------------------------------------------ecCC--eeEEE-ECCCC----CEEEEeCC-CeEEEE
Confidence            1                                           2343  78888 77776    78888876 999999


Q ss_pred             eCCCc--cccccC
Q 016982          367 DLESQ--EDLLNY  377 (379)
Q Consensus       367 ~~~~~--~~~~~~  377 (379)
                      |..++  +.++.+
T Consensus       331 D~~t~~l~~~~~i  343 (361)
T 2oiz_A          331 DISQPEPKLLRTI  343 (361)
T ss_dssp             ECSSSSCEEEEEE
T ss_pred             ECCCCcceeeEEe
Confidence            99998  877653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=3.8e-17  Score=138.68  Aligned_cols=237  Identities=12%  Similarity=0.090  Sum_probs=164.0

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..|.+++|++++..++..+.++.++.|.   +  +....+..+...+.+++|+|++++++++..++.|.+||..+++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~   80 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR   80 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred             cccceeeecCCccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence            4578899999988887777788899992   2  4556666677778999999999977788888999999998887544


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEe-ecCCcCEEEEEEcCCCcEEEEeeC-
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIR-KRHDSSVTSVAWHPNNVFLATTST-  164 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~-  164 (379)
                      ..  ..+...+.+++++|+|+++++...+    +.|.+||.+....   ...+. ......+.+++++|+++++++... 
T Consensus        81 ~~--~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  155 (333)
T 2dg1_A           81 PF--VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL---QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG  155 (333)
T ss_dssp             EE--ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC---EEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred             Ee--eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEE---EEEEccCccCCcccceEECCCCCEEEEeccc
Confidence            32  2456789999999999987777666    6899988776652   22221 123457899999999988776653 


Q ss_pred             -----CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEE-EEcCCCeEEEEECCCCCc
Q 016982          165 -----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA-YVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       165 -----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~d~~i~v~d~~~~~~  238 (379)
                           .+.|..+|.                  ..++ +..+......+..++|+|+|+.|+ +.+.++.|.+||+.....
T Consensus       156 ~~~~~~~~l~~~~~------------------~~~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~  216 (333)
T 2dg1_A          156 YSTNPLGGVYYVSP------------------DFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV  216 (333)
T ss_dssp             BTTBCCEEEEEECT------------------TSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred             cccCCCceEEEEeC------------------CCCE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence                 244555543                  1122 222222233478899999998665 445678999999864322


Q ss_pred             eeeee------eee-cCCeeeEEEecCCcEEEEEe-CCCeEEEEec
Q 016982          239 LAQNV------AFR-DLPLRDVLFVSEKMVIGVGF-DCNPMVFAAD  276 (379)
Q Consensus       239 ~~~~~------~~~-~~~i~~~~~s~~~~~l~~~~-d~~~~i~~~~  276 (379)
                      ....+      ... ...+..++++++|+++++.. ++.+.+|+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          217 TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            11111      001 13567899999999887654 5678888653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=1.6e-16  Score=134.83  Aligned_cols=238  Identities=8%  Similarity=-0.008  Sum_probs=158.6

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC----CeEEEE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD----RNSYVW   81 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw   81 (379)
                      +..+...+.+++|+|+|++++++..++.|.+||..+++...  ....+...+.+++++|+|+++++...+    +.|.+|
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR--PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE--EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            34455677899999999988888888999999998774332  233456789999999999888777666    689999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      |..++.....+........+.+++++|+|+++++...+    +...||.++..... . ..+ ......+..++|+|+++
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~-~-~~~-~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-V-TPI-IQNISVANGIALSTDEK  194 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-E-EEE-EEEESSEEEEEECTTSS
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE-E-EEe-ecCCCcccceEECCCCC
Confidence            99887643222111234578999999999877766531    23344544432210 1 222 22334578999999998


Q ss_pred             EEE-EeeCCCeEEEEeccccccccccccCCCccCCcccceE--------EEeecCCcceEEEEECCCCCEEEEEcCCCeE
Q 016982          158 FLA-TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI--------LQLDLSFSWAFGVKWSPSGNTLAYVGHNSMI  228 (379)
Q Consensus       158 ~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i  228 (379)
                      .|+ +.+.++.|.+||+..                 .+..+        ..+..+ ..+..++++++|+++++...++.|
T Consensus       195 ~l~v~~~~~~~i~~~d~~~-----------------~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v  256 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALED-----------------DGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV  256 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECT-----------------TSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             EEEEEeCCCCeEEEEEecC-----------------CCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEE
Confidence            554 445678999998621                 11111        112222 357889999999988877778999


Q ss_pred             EEEECCCCCceeeeeeeecC------CeeeEEEecCCcEEE-EEeCC
Q 016982          229 YFVDDVGPSPLAQNVAFRDL------PLRDVLFVSEKMVIG-VGFDC  268 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~-~~~d~  268 (379)
                      .+||.. ++ .+..+..+..      .+.+++|+||++.|. ++.++
T Consensus       257 ~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          257 LVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEECCC-CC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            999974 33 3344443322      578999999976554 54443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=2.2e-15  Score=125.57  Aligned_cols=240  Identities=8%  Similarity=-0.076  Sum_probs=168.5

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      .+...+.+++++++|+++++...++.|.+||.. +.... ..+..+...+.+++++++|+.+++...++.|..|+.. ++
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~   88 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI   88 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence            345689999999999988776667899999988 53322 2233345678999999999888877768889999986 33


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      . ..+........+..+++.++++++++...++.|..||. .+.   ............+..+++.++++++++...++.
T Consensus        89 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~  163 (299)
T 2z2n_A           89 I-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK---IREYELPNKGSYPSFITLGSDNALWFTENQNNA  163 (299)
T ss_dssp             E-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred             E-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC---EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence            2 22322224457899999999988877777888998887 433   222221234567899999999988887777788


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEE-EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR  246 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  246 (379)
                      |..||.                   .++... ........+..++++++|+++++...++.|.+||. ++.........+
T Consensus       164 i~~~~~-------------------~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~  223 (299)
T 2z2n_A          164 IGRITE-------------------SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP  223 (299)
T ss_dssp             EEEECT-------------------TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred             EEEEcC-------------------CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC
Confidence            999974                   222221 12223445789999999998777777889999998 544221112223


Q ss_pred             cCCeeeEEEecCCcEEEEE-eCCCeEEEEe
Q 016982          247 DLPLRDVLFVSEKMVIGVG-FDCNPMVFAA  275 (379)
Q Consensus       247 ~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~  275 (379)
                      ...+.+++++++|+++++. .++.+..|+.
T Consensus       224 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            4568899999999977765 4567777765

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=1.4e-16  Score=148.99  Aligned_cols=240  Identities=8%  Similarity=0.033  Sum_probs=151.6

Q ss_pred             CCCcEEEEEecCC-----eEEEEEecCCceEEEEEe----ccCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEeccC
Q 016982           20 PDHAMVAFCPNNN-----EVHIYKLIQEKWEKLHVL----QKHDQIVSGIDWSVRSNRIVTVSHDR-----NSYVWNQEG   85 (379)
Q Consensus        20 ~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~   85 (379)
                      |+|++++....++     .+.+.+..+++.+.+...    .+|...+..++|||||++|+.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            8999887765432     334444334432322111    12444688999999999998776543     899999999


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe----------------EEEEEeecCCceeEEEEEe-ecCCcCEE
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT----------------VCICYYEQENNWWVSKLIR-KRHDSSVT  148 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------------v~i~~~~~~~~~~~~~~~~-~~~~~~v~  148 (379)
                      ++...... .  ...+..++|+|||+.|+.++.++.                |++|++.++..... .... ..+...+.
T Consensus       161 g~~~~~~~-~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~-~v~~~~~~~~~~~  236 (710)
T 2xdw_A          161 AKELPDVL-E--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI-LCAEFPDEPKWMG  236 (710)
T ss_dssp             TEEEEEEE-E--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-EEECCTTCTTCEE
T ss_pred             CCCCcccc-c--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccce-EEeccCCCCeEEE
Confidence            98654321 1  223678999999999999988765                89999877652111 1110 22455678


Q ss_pred             EEEEcCCCcEEEEeeC-----CCeEEEEeccccccccccccCCCccCCcccc-eEEEeecCCcceEEEEECCCCCEEEEE
Q 016982          149 SVAWHPNNVFLATTST-----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE-QILQLDLSFSWAFGVKWSPSGNTLAYV  222 (379)
Q Consensus       149 ~~~~~p~~~~l~~~~~-----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~  222 (379)
                      .+.|+|||++|+..+.     +..|.+||+.....  +          ..+. ....+..+...+.. .|+|+|+.|+..
T Consensus       237 ~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~----------~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~  303 (710)
T 2xdw_A          237 GAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN--G----------ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFK  303 (710)
T ss_dssp             EEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS--S----------SCSSCCCEEEECSSSSCEE-EEEEETTEEEEE
T ss_pred             EEEEcCCCCEEEEEEEccCCCccEEEEEECccccc--c----------cCCccceEEeeCCCCcEEE-EEeccCCEEEEE
Confidence            9999999999887764     56899998721000  0          0011 34445555554544 588999887766


Q ss_pred             cCC----CeEEEEECCCCCc-eeeeeeeecC--CeeeEEEecCCcEEEE-EeCCCeEEEEec
Q 016982          223 GHN----SMIYFVDDVGPSP-LAQNVAFRDL--PLRDVLFVSEKMVIGV-GFDCNPMVFAAD  276 (379)
Q Consensus       223 ~~d----~~i~v~d~~~~~~-~~~~~~~~~~--~i~~~~~s~~~~~l~~-~~d~~~~i~~~~  276 (379)
                      +..    +.|.+||+.++.. ..+.+..+..  .+..++|++++.++++ ..++...+|..+
T Consensus       304 s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          304 TNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             ECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             ECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEE
Confidence            543    4699999887642 1234444433  5788999977777764 456655555443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=9.7e-17  Score=135.76  Aligned_cols=245  Identities=14%  Similarity=0.139  Sum_probs=169.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC------------------------CeEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHD------------------------RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++...... ..+-..+..++++|+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence            3578999999999988887776                        479999998887544331 123357889999999


Q ss_pred             CCEEEEEeCCCeEEEEEeecCCceeEEEEEe--------ecCCcCEEEEEEcC-CCcEEEEee-CCCeEEEEeccccccc
Q 016982          110 ENKFAVGSGAKTVCICYYEQENNWWVSKLIR--------KRHDSSVTSVAWHP-NNVFLATTS-TDGKCRVFSTFIKGVD  179 (379)
Q Consensus       110 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~p-~~~~l~~~~-~d~~i~v~d~~~~~~~  179 (379)
                      |+++++...++.|++|+.+....  ....+.        ..+......++++| +++++++.+ .++.|++|+.      
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~--~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~------  173 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEG--PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP------  173 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSC--CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT------
T ss_pred             CCEEEEECCCCEEEEEeCCCCeE--EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC------
Confidence            99888888889999998765421  112221        12334688999999 788888886 6899999984      


Q ss_pred             cccccCCCccCCcccceEEEeec----------CCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeee--ee
Q 016982          180 IKEKKEGTSSDTKFGEQILQLDL----------SFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVA--FR  246 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~  246 (379)
                                   .+..+..+..          +......++++|+ +.++++...++.|++||..+++ .+..+.  .+
T Consensus       174 -------------~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~-~~~~~~~~~~  239 (329)
T 3fvz_A          174 -------------SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE-FVREIKHASF  239 (329)
T ss_dssp             -------------TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-EEEEECCTTT
T ss_pred             -------------CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc-EEEEEecccc
Confidence                         3444444421          1223789999998 7777777788999999988554 345543  34


Q ss_pred             cCCeeeEEEecCCcEEEEE--------eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccC
Q 016982          247 DLPLRDVLFVSEKMVIGVG--------FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGV  318 (379)
Q Consensus       247 ~~~i~~~~~s~~~~~l~~~--------~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (379)
                      ...+.+++|+| +.+++..        .+..+.+|+...........                                 
T Consensus       240 ~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~---------------------------------  285 (329)
T 3fvz_A          240 GRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK---------------------------------  285 (329)
T ss_dssp             TTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC---------------------------------
T ss_pred             CCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc---------------------------------
Confidence            56688999999 4443322        22356666655433221110                                 


Q ss_pred             cccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          319 GNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       319 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                                ...+|...+.+|+ +++++    .++++...+++|++|++..
T Consensus       286 ----------~~~~~~~~p~~ia-~~~dG----~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          286 ----------PVRKHFDMPHDIV-ASEDG----TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             ----------CSSSCCSSEEEEE-ECTTS----EEEEEESSSCCEEEEEEEE
T ss_pred             ----------CCCCccCCeeEEE-ECCCC----CEEEEECCCCEEEEEeCCc
Confidence                      0024566788899 76665    8999999999999999865

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.80  E-value=8.5e-17  Score=150.41  Aligned_cols=243  Identities=9%  Similarity=-0.076  Sum_probs=164.0

Q ss_pred             CcceeEEEeCCCCcEEEEEecCC-----eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCe-------
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNN-----EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN-------   77 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------   77 (379)
                      ...+..++|||||++||.+..++     .|++||+.+++.... .+..  ..+..++|+|||+.|+.++.++.       
T Consensus       124 ~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cccC--cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            34688999999999999876543     899999998843221 2222  23678999999999999887765       


Q ss_pred             ---------EEEEeccCCceeeeEEee--cCCCceeEEEECCCCCEEEEEeC-----CCeEEEEEeec------CCceeE
Q 016982           78 ---------SYVWNQEGSEWVPTLVIL--RLNRAALCVQWSPKENKFAVGSG-----AKTVCICYYEQ------ENNWWV  135 (379)
Q Consensus        78 ---------i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~~~~~------~~~~~~  135 (379)
                               |++|++.+++....+...  .+...+..+.|+|||++|+..+.     +..|++||+..      +..  .
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--~  278 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--K  278 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC--C
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc--c
Confidence                     999999887632222212  23455789999999999988765     56899999876      421  1


Q ss_pred             EEEEeecCCcCEEEEEEcCCCcEEEEeeCC----CeEEEEeccccccccccccCCCccCCcccc--eEEEeecCCc--ce
Q 016982          136 SKLIRKRHDSSVTSVAWHPNNVFLATTSTD----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQLDLSFS--WA  207 (379)
Q Consensus       136 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~v  207 (379)
                      ...+ ..+...+.. .|+|+|+.|+..+..    +.|.+||+.                  .+.  ....+..+..  .+
T Consensus       279 ~~~l-~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~~~~~~~  338 (710)
T 2xdw_A          279 WVKL-IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFT------------------DPEESKWKVLVPEHEKDVL  338 (710)
T ss_dssp             CEEE-ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETT------------------SCCGGGCEEEECCCSSCEE
T ss_pred             eEEe-eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCC------------------CCCcccceeccCCCCCCeE
Confidence            2333 445555544 488898877766543    368888862                  221  1233333333  67


Q ss_pred             EEEEECCCCCEEEEEcCCCe--EEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-E-Ee---CCCeEEEEecCC
Q 016982          208 FGVKWSPSGNTLAYVGHNSM--IYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-V-GF---DCNPMVFAADET  278 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~-~~---d~~~~i~~~~~~  278 (379)
                      ..++|++++.++++...++.  |.+||+.+++ ....+..+...+..++++|++..++ + ++   ...++.|+....
T Consensus       339 ~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          339 EWVACVRSNFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            88999988888888888874  6667875554 3355666667788899999987555 2 22   245667766543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.79  E-value=1.7e-16  Score=135.42  Aligned_cols=223  Identities=13%  Similarity=0.074  Sum_probs=150.4

Q ss_pred             cceeEEEeCCCCcEEEEEecC---C--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC----------
Q 016982           11 QCITCHAWSPDHAMVAFCPNN---N--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD----------   75 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~d---g--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------   75 (379)
                      ..+..++|||||++||+.+.+   +  .|++|++.+++  ...... +.. +..++|+|+|+.|+.++.+          
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~--~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS--SKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE--EEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc--eEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            457789999999999987653   3  47777887763  333332 233 8999999999998887632          


Q ss_pred             -----------------CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-------eEEEEEeecCC
Q 016982           76 -----------------RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK-------TVCICYYEQEN  131 (379)
Q Consensus        76 -----------------~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~v~i~~~~~~~  131 (379)
                                       ..|.+||+.+++....+..   . .+..+.|+|+| +++++..++       ...+|.++.+.
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~  209 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK  209 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc
Confidence                             5699999998875333432   3 78899999999 777776542       45666666332


Q ss_pred             ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC--------eEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG--------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       132 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                          .+.+ ..+ ..+..+  +|+|++|+.++.++        .|.+||                    .++.......+
T Consensus       210 ----~~~l-~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--------------------~~~~~~l~~~~  261 (347)
T 2gop_A          210 ----EEKM-FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--------------------GKEVMGILDEV  261 (347)
T ss_dssp             ----EEEE-EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--------------------SSCEEESSTTC
T ss_pred             ----eEEe-ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--------------------CCceEeccccC
Confidence                2333 233 555554  99999888776543        566664                    12222223344


Q ss_pred             CcceEE-EEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCe-EEEEec
Q 016982          204 FSWAFG-VKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNP-MVFAAD  276 (379)
Q Consensus       204 ~~~v~~-~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~-~i~~~~  276 (379)
                      ...+.. +.|+ ++ ++++++.++.+++| +.++ .. ..+..+...+.+++|+| .-+++.+.++.. .+|..+
T Consensus       262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred             CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence            566776 9999 88 88888899999999 8743 33 33334467789999999 433345566655 788766

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.79  E-value=6.7e-17  Score=150.67  Aligned_cols=233  Identities=12%  Similarity=0.036  Sum_probs=148.2

Q ss_pred             CCCCcEEEEEecCC---eEEEEE--ecCCceEEEEEe----ccCCCceEEEEEcCCCCEEEEE-----eCCCeEEEEecc
Q 016982           19 SPDHAMVAFCPNNN---EVHIYK--LIQEKWEKLHVL----QKHDQIVSGIDWSVRSNRIVTV-----SHDRNSYVWNQE   84 (379)
Q Consensus        19 s~~~~~l~~~~~dg---~i~i~~--~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~vw~~~   84 (379)
                      +|+|++++....++   .-.||.  ..+++.+.+...    .+|...+..++|||||++|+.+     +.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            47899888776643   344444  444433333221    2355578999999999998843     334689999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe-------------EEEEEeecCCceeEEEEEe--ecCCcCEEE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT-------------VCICYYEQENNWWVSKLIR--KRHDSSVTS  149 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------v~i~~~~~~~~~~~~~~~~--~~~~~~v~~  149 (379)
                      +++.......  .......++|+|||+.|+.++.|..             |++|++.++....  ..+.  ..+...+..
T Consensus       156 tg~~~~~~~~--~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~--~lv~~~~~~~~~~~~  231 (695)
T 2bkl_A          156 SGEWSKVDVI--EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD--TVVHERTGDPTTFLQ  231 (695)
T ss_dssp             TCCBCSSCCB--SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC--EEEECCCCCTTCEEE
T ss_pred             CCCCcCCccc--CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc--eEEEecCCCCEEEEE
Confidence            9875311111  1111268999999999999988776             9999988765211  1221  234567889


Q ss_pred             EEEcCCCcEEEEeeCCC----eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc--
Q 016982          150 VAWHPNNVFLATTSTDG----KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--  223 (379)
Q Consensus       150 ~~~~p~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--  223 (379)
                      +.|+|||++|+..+.++    .|.+++.                  ..+ ....+..+...+....+ ++|.+++.+.  
T Consensus       232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~------------------~~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~  291 (695)
T 2bkl_A          232 SDLSRDGKYLFVYILRGWSENDVYWKRP------------------GEK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEG  291 (695)
T ss_dssp             EEECTTSCCEEEEEEETTTEEEEEEECT------------------TCS-SCEEEEECSSCCEEEEE-ETTEEEEEECTT
T ss_pred             EEECCCCCEEEEEEeCCCCceEEEEEcC------------------CCC-ceEEeecCCCceEEEEe-cCCcEEEEECCC
Confidence            99999999888877655    5556543                  222 23344444555566666 5666444444  


Q ss_pred             -CCCeEEEEECCCCCc--eeeeeeee-cCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982          224 -HNSMIYFVDDVGPSP--LAQNVAFR-DLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       224 -~d~~i~v~d~~~~~~--~~~~~~~~-~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~  276 (379)
                       .++.|.+||+.++..  ....+..+ ...+..++|+ ++.+++ ...++..++|..+
T Consensus       292 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          292 APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             257899999877642  12223222 4457888888 566666 5567777887765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.78  E-value=1.2e-14  Score=130.61  Aligned_cols=302  Identities=9%  Similarity=-0.013  Sum_probs=197.7

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEec--CCceEEEEEeccCCCceEEEEEc----CCCCEEEEEe-CCCeEEEEe
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLI--QEKWEKLHVLQKHDQIVSGIDWS----VRSNRIVTVS-HDRNSYVWN   82 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~-~d~~i~vw~   82 (379)
                      ...+..+.|+|||+++++++.++.|.+||+.  +.  +.+..+.... ....++|+    |+|++++++. .++++.++|
T Consensus       196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMD  272 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--cEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEE
Confidence            4467799999999999999999999999996  44  5666666533 45789999    6999887766 458999999


Q ss_pred             ccCCceeeeEEeec--------C-CCceeEEEECCCCCEEE-EEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982           83 QEGSEWVPTLVILR--------L-NRAALCVQWSPKENKFA-VGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        83 ~~~~~~~~~~~~~~--------~-~~~v~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                      ..+.+.+..+...+        | ...+..+..++++..++ ....+|.|.++|+........ ..  ........++.|
T Consensus       273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v-~~--i~~~~~~~d~~~  349 (567)
T 1qks_A          273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT-TE--ISAERFLHDGGL  349 (567)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE-EE--EECCSSEEEEEE
T ss_pred             CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee-ee--eeccccccCceE
Confidence            99988776664322        1 12577888888766544 445579999988876543211 22  234456778999


Q ss_pred             cCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEeec-----CCcceEEEEECCCCCEE-EEEc-C
Q 016982          153 HPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-----SFSWAFGVKWSPSGNTL-AYVG-H  224 (379)
Q Consensus       153 ~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l-~~~~-~  224 (379)
                      +|++++++++. .++.|.++|+                  .+++.+..+..     |.+.-..+ ++|++..+ +++. .
T Consensus       350 ~pdgr~~~va~~~sn~V~ViD~------------------~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          350 DGSHRYFITAANARNKLVVIDT------------------KEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMG  410 (567)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEET------------------TTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred             CCCCCEEEEEeCCCCeEEEEEC------------------CCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCC
Confidence            99999887665 5789999997                  55555555543     22212122 58875544 4443 4


Q ss_pred             CCeEEEEECCCC------CceeeeeeeecCCeeeEEEecCCcEEEEEe--------CCCeEEEEecCC-----C-cEEEE
Q 016982          225 NSMIYFVDDVGP------SPLAQNVAFRDLPLRDVLFVSEKMVIGVGF--------DCNPMVFAADET-----G-IWTFI  284 (379)
Q Consensus       225 d~~i~v~d~~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--------d~~~~i~~~~~~-----~-~~~~~  284 (379)
                      ++.|.++|....      .+.++.+......-..+..+|+++++.+..        .+.|.+|+....     . .++++
T Consensus       411 ~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~  490 (567)
T 1qks_A          411 DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTL  490 (567)
T ss_dssp             SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEE
T ss_pred             CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEe
Confidence            689999998762      224566654444435578899999887654        347888887643     1 11111


Q ss_pred             EEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee----cC
Q 016982          285 KFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG----LD  360 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~----~D  360 (379)
                      ..-+..                                      .+..-...+..++ |+++|+   ..++|..    .+
T Consensus       491 ~~~~~~--------------------------------------~~~~~~~~~~~~~-~~~~G~---~~~~s~~~~~~~~  528 (567)
T 1qks_A          491 PIAEWA--------------------------------------GITEGQPRVVQGE-FNKDGT---EVWFSVWNGKDQE  528 (567)
T ss_dssp             CHHHHH--------------------------------------TCCSSCCEEEEEE-ECTTSS---EEEEEEECCTTSC
T ss_pred             cccccc--------------------------------------ccCCCCcceEeee-ECCCCC---EEEEEeecCCCCC
Confidence            000000                                      0001124677888 877761   3444432    37


Q ss_pred             ceEEEEeCCCccccccCC
Q 016982          361 GKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       361 g~v~iW~~~~~~~~~~~~  378 (379)
                      +.|.++|.++++.++.+.
T Consensus       529 ~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          529 SALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEECCCceEEEEeC
Confidence            999999999988776543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.78  E-value=8e-16  Score=126.19  Aligned_cols=228  Identities=11%  Similarity=0.111  Sum_probs=168.2

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCC
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNR   99 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~   99 (379)
                      .+++|++++.++.|++||.+++  +.+..+..+. ..+.++.++|+|++|+  +.++.|..||. +++.+..+.. ....
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG--~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~   77 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK--EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA-PAGC   77 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT--EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-CTTC
T ss_pred             CCcEEEeeCCCCEEEEEECCCC--eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-CCCc
Confidence            4688999999999999999887  6777777665 4688999999999888  34678999999 7776665542 2235


Q ss_pred             ceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEee-----cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982          100 AALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRK-----RHDSSVTSVAWHPNNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~  173 (379)
                      .+.++.+.++|+.+++.+. ++.+..++. .++   ....+..     .+......+++.++|+++++...++.|..||.
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk---~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGE---VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECT-TSC---EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeC-CCC---EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence            7888999999999999887 666666554 333   1222211     12224456678899999999999999999995


Q ss_pred             cccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec------
Q 016982          174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD------  247 (379)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~------  247 (379)
                                        . ++.+.++... ..+.++...++|+.++++..++.|..+|..+++.+ ..+....      
T Consensus       154 ------------------~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-w~~~~~~~~~~~l  212 (276)
T 3no2_A          154 ------------------N-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-RRVNANDIEGVQL  212 (276)
T ss_dssp             ------------------T-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEE-EEEEGGGSBSCCC
T ss_pred             ------------------C-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-EEecCCCCCCccc
Confidence                              4 7777777654 34567788999999998888889999998877643 4444222      


Q ss_pred             CCeeeEEEecCCcEEEEEeCC---------CeEEEEecCCC
Q 016982          248 LPLRDVLFVSEKMVIGVGFDC---------NPMVFAADETG  279 (379)
Q Consensus       248 ~~i~~~~~s~~~~~l~~~~d~---------~~~i~~~~~~~  279 (379)
                      ..+..+...++|.++++++++         ..+++..+..+
T Consensus       213 ~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          213 FFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             cccccceEcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence            226788888999999987644         34577776655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.78  E-value=4.8e-16  Score=129.58  Aligned_cols=200  Identities=10%  Similarity=0.031  Sum_probs=140.0

Q ss_pred             EeccCCCceEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           49 VLQKHDQIVSGIDWSVRSN-RIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        49 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                      .+..+.....+++|+|+++ +++++..++.|..|+..++  ...+  ..+...+.+++++|+|+++++...++.|.+||.
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE--MHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE--ESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE--ECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            3444555678999999998 6777788899999999877  3333  345677899999999998877777789999998


Q ss_pred             ecCCceeEEEEEee---cCCcCEEEEEEcCCCcEEEE----eeC-------------CCeEEEEeccccccccccccCCC
Q 016982          128 EQENNWWVSKLIRK---RHDSSVTSVAWHPNNVFLAT----TST-------------DGKCRVFSTFIKGVDIKEKKEGT  187 (379)
Q Consensus       128 ~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~----~~~-------------d~~i~v~d~~~~~~~~~~~~~~~  187 (379)
                      .++..   ......   .....+..++++|+|+++++    ++.             .+.|..++.              
T Consensus        98 ~~g~~---~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~--------------  160 (296)
T 3e5z_A           98 PGGEW---ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP--------------  160 (296)
T ss_dssp             TTCCE---EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT--------------
T ss_pred             CCCcE---EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC--------------
Confidence            66652   222201   11234568999999998887    331             234555542              


Q ss_pred             ccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce---eeeeeeecCCeeeEEEecCCcEEEE
Q 016982          188 SSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL---AQNVAFRDLPLRDVLFVSEKMVIGV  264 (379)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~  264 (379)
                           .++ +..+..+......++|+|+|+.|++.+.++.|.+||+.....+   ...+..+...+..++++++|+++++
T Consensus       161 -----~g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~  234 (296)
T 3e5z_A          161 -----DGT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS  234 (296)
T ss_dssp             -----TSC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE
T ss_pred             -----CCC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE
Confidence                 122 3334444556789999999999877778899999998632222   1222233455778999999998887


Q ss_pred             EeCCCeEEEEec
Q 016982          265 GFDCNPMVFAAD  276 (379)
Q Consensus       265 ~~d~~~~i~~~~  276 (379)
                      . ++.+.+|+.+
T Consensus       235 ~-~~~v~~~~~~  245 (296)
T 3e5z_A          235 A-GDGVHVLTPD  245 (296)
T ss_dssp             E-TTEEEEECTT
T ss_pred             c-CCeEEEECCC
Confidence            7 7888888764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=1.5e-17  Score=144.60  Aligned_cols=229  Identities=13%  Similarity=0.067  Sum_probs=151.7

Q ss_pred             EEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEE-------------------EEEcCCCCEEEEE---
Q 016982           15 CHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSG-------------------IDWSVRSNRIVTV---   72 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~---   72 (379)
                      .+.|+|||++|++++.++.|++|++.+++...+.  ..+......                   +.|+|+++.++..   
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIY--TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE--ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE--ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            3789999999999999899999999887433333  323332222                   3567888776554   


Q ss_pred             --eCCCeEEEEeccCCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCC------CeEEEEEeecCCceeEEEEEeecC
Q 016982           73 --SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGA------KTVCICYYEQENNWWVSKLIRKRH  143 (379)
Q Consensus        73 --~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~  143 (379)
                        ..+..|.+||+.+++.....   .+...+..+.|+| +++.|+..+.+      ..|.+|++....    .+.+ ..+
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l-~~~  234 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGELEVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKI-KEH  234 (396)
T ss_dssp             HTCCCEEEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEES-SCC
T ss_pred             cCCCcceEEEEECCCCcEEeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEe-ecc
Confidence              35568999999988744333   4567789999999 78877776653      357777765543    2222 222


Q ss_pred             --CcCEEEEEEcCCCcEEEEeeCC-----CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-C
Q 016982          144 --DSSVTSVAWHPNNVFLATTSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-S  215 (379)
Q Consensus       144 --~~~v~~~~~~p~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~  215 (379)
                        ...+..++|+|+|++|+..+.+     +.|.+||+                  .+++....... .. .. +.|+| +
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~------------------~~g~~~~l~~~-~~-~~-~~~s~~d  293 (396)
T 3c5m_A          235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP------------------ETLENEEVMVM-PP-CS-HLMSNFD  293 (396)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT------------------TTCCEEEEEEC-CS-EE-EEEECSS
T ss_pred             CCCccccceEECCCCCEEEEEecCCCCccceEEEEEC------------------CCCCeEEeeeC-CC-CC-CCccCCC
Confidence              2357889999999987776543     44999986                  33332221111 11 23 89999 9


Q ss_pred             CCEEEEEc----------------CCCeEEEEECCCCCceeeeeeeecC-----------CeeeEEEecCCcEEEEEe--
Q 016982          216 GNTLAYVG----------------HNSMIYFVDDVGPSPLAQNVAFRDL-----------PLRDVLFVSEKMVIGVGF--  266 (379)
Q Consensus       216 ~~~l~~~~----------------~d~~i~v~d~~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~~--  266 (379)
                      |+++++++                .+..|++||+.++..  ..+..+..           .+..++|+|||+.|+...  
T Consensus       294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~  371 (396)
T 3c5m_A          294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF  371 (396)
T ss_dssp             SSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             CceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeEEEEecC
Confidence            99888754                347899999887653  33444433           256789999999877332  


Q ss_pred             CCCeEEEEec
Q 016982          267 DCNPMVFAAD  276 (379)
Q Consensus       267 d~~~~i~~~~  276 (379)
                      ++...+|..+
T Consensus       372 ~~~~~l~~~~  381 (396)
T 3c5m_A          372 EGVPAIYIAD  381 (396)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCCceEEEEE
Confidence            4556666654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=5.3e-16  Score=132.71  Aligned_cols=217  Identities=11%  Similarity=0.014  Sum_probs=142.4

Q ss_pred             EEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccC------CCceEEEEEcCCCCEEEEEeC--CC
Q 016982           15 CHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKH------DQIVSGIDWSVRSNRIVTVSH--DR   76 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~   76 (379)
                      .++|+|||++++++.          .++.|.+||..+.  +.+..+...      ......++++|+|++|+++..  ++
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~  131 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT  131 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence            899999999998876          2567999998876  455544422      234568999999999988864  57


Q ss_pred             eEEEEeccCCceeee-EEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeec-------------------------
Q 016982           77 NSYVWNQEGSEWVPT-LVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQ-------------------------  129 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~-------------------------  129 (379)
                      .|.+||+.+++.+.. +   ... ....+.+.|++ ..+++.+.||.+.++++..                         
T Consensus       132 ~v~v~d~~~~~~~~~~i---~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  207 (361)
T 2oiz_A          132 SIGIVDVAKGDYVEDVT---AAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAP  207 (361)
T ss_dssp             EEEEEETTTTEEEEEEG---GGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCC
T ss_pred             eEEEEECCCCcEEEEEe---cCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEe
Confidence            899999999875443 2   111 11112333432 3333444444444444322                         


Q ss_pred             -----------------------CCceeEEEEEe--e---cC----CcCEEEEEEcCCCcEEEEeeC-----------CC
Q 016982          130 -----------------------ENNWWVSKLIR--K---RH----DSSVTSVAWHPNNVFLATTST-----------DG  166 (379)
Q Consensus       130 -----------------------~~~~~~~~~~~--~---~~----~~~v~~~~~~p~~~~l~~~~~-----------d~  166 (379)
                                             .... ....+.  .   .+    ......++|+|+++.++++..           .+
T Consensus       208 ~~~g~~~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~  286 (361)
T 2oiz_A          208 ALDKDKAHFVSYYGNVYSADFSGDEVK-VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA  286 (361)
T ss_dssp             EECSSEEEEEBTTSEEEEEECSSSSCE-EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred             cccCCEEEEEeCCCeEEEEEecCCCce-ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence                                   2100 000000  0   00    000112678888776666543           34


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC--Cceeeeee
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP--SPLAQNVA  244 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~  244 (379)
                      .|.+||+                  .+.+.+.++..+.  +.+++|+|+|++|++++. +.|.+||..++  + ++..+.
T Consensus       287 ~v~viD~------------------~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~-~~~~i~  344 (361)
T 2oiz_A          287 EIWVMDT------------------KTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK-LLRTIE  344 (361)
T ss_dssp             EEEEEET------------------TTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE-EEEEET
T ss_pred             eEEEEEC------------------CCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce-eeEEec
Confidence            7999996                  6788888888766  899999999999998887 99999999887  5 446654


Q ss_pred             eecCCeeeEEEecCCc
Q 016982          245 FRDLPLRDVLFVSEKM  260 (379)
Q Consensus       245 ~~~~~i~~~~~s~~~~  260 (379)
                      ..+.....++++|+|+
T Consensus       345 ~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          345 GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TSCSSEEEEEECCCSC
T ss_pred             cCCCCcEEEEecCCCC
Confidence            5567778999999985

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=5.5e-16  Score=127.34  Aligned_cols=238  Identities=8%  Similarity=-0.082  Sum_probs=159.7

Q ss_pred             ceeEEEeCCCCcEEE-EEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           12 CITCHAWSPDHAMVA-FCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ...+++++++|++++ +...++.|.+|+..+..  .......+...+.+++++++++++++.. ++.|.+||..+.....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcc--cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence            778999999999777 54678899999876542  2111122334678999999998666555 8899999987764221


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEE
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV  170 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v  170 (379)
                       +. ......+..++++++|+++++...++.|.+|+......    ..........+.+++++|+++++++...++.|.+
T Consensus       102 -~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~  175 (270)
T 1rwi_B          102 -LP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVK  175 (270)
T ss_dssp             -CC-CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred             -ee-cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----EeeccccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence             11 12235688999999999777777788898885443321    1111223345788999999997777777889999


Q ss_pred             EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCe
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPL  250 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i  250 (379)
                      ||..                  ..........+...+..++++++|.++++...++.|.+||..+.... .....+...+
T Consensus       176 ~~~~------------------~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~p  236 (270)
T 1rwi_B          176 LEAE------------------SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFTGLNTP  236 (270)
T ss_dssp             ECTT------------------TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCCCSCSCE
T ss_pred             EecC------------------CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eeccCCCCCc
Confidence            9862                  22222211222256789999999988877777889999998664422 2221223568


Q ss_pred             eeEEEecCCcEEEE-EeCCCeEEEEecC
Q 016982          251 RDVLFVSEKMVIGV-GFDCNPMVFAADE  277 (379)
Q Consensus       251 ~~~~~s~~~~~l~~-~~d~~~~i~~~~~  277 (379)
                      .+++++++|+++++ ..++.|.++....
T Consensus       237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          237 LAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             eeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            89999999987765 4567787776553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=2.8e-16  Score=146.54  Aligned_cols=242  Identities=9%  Similarity=-0.087  Sum_probs=155.7

Q ss_pred             cCcceeEEEeCCCCcEEEEE-----ecCCeEEEEEecCCceEEEEEeccCCCce--EEEEEcCCCCEEEEEeCCCe----
Q 016982            9 FAQCITCHAWSPDHAMVAFC-----PNNNEVHIYKLIQEKWEKLHVLQKHDQIV--SGIDWSVRSNRIVTVSHDRN----   77 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~----   77 (379)
                      |...+.+++|||||++||.+     +.+..|++||+.+++.  +.  ..+...+  ..++|+|||+.|+.++.|..    
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~--~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW--SK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB--CS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC--cC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence            44578999999999999954     3346899999998742  10  1122222  68999999999999988765    


Q ss_pred             ---------EEEEeccCCcee--eeEEeecCCCceeEEEECCCCCEEEEEeCCC----eEEEEEeecCCceeEEEEEeec
Q 016982           78 ---------SYVWNQEGSEWV--PTLVILRLNRAALCVQWSPKENKFAVGSGAK----TVCICYYEQENNWWVSKLIRKR  142 (379)
Q Consensus        78 ---------i~vw~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~v~i~~~~~~~~~~~~~~~~~~  142 (379)
                               |++|++.+++..  ..+....+...+..+.|+|||++|++.+.++    .|.+++...+.    .+.+ ..
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~----~~~l-~~  269 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD----FRLL-VK  269 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS----CEEE-EE
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc----eEEe-ec
Confidence                     999999887632  2222223445788999999999998887665    45555433333    2333 34


Q ss_pred             CCcCEEEEEEcCCCcEEEEee---CCCeEEEEeccccccccccccCCCccCCcccce--EEEe-ecC-CcceEEEEECCC
Q 016982          143 HDSSVTSVAWHPNNVFLATTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ--ILQL-DLS-FSWAFGVKWSPS  215 (379)
Q Consensus       143 ~~~~v~~~~~~p~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~v~~~~~sp~  215 (379)
                      +...+....+ +++.+++...   .++.|.+||+.                  .+..  ...+ ..+ ...+..++|+ +
T Consensus       270 ~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~~~~~~l~~~~~~-~  329 (695)
T 2bkl_A          270 GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPA------------------KPARASWKEIVPEDSSASLLSVSIV-G  329 (695)
T ss_dssp             CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTT------------------BCSGGGCEEEECCCSSCEEEEEEEE-T
T ss_pred             CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCC------------------CCCccCCeEEecCCCCCeEEEEEEE-C
Confidence            4555566666 5666444433   25789999862                  2221  1222 222 4457888888 6


Q ss_pred             CCEEEEEcCCCeEEEEECCCCCceeeeeeee-cCCeeeEEEecCCcEEE-E-Ee---CCCeEEEEecCCC
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR-DLPLRDVLFVSEKMVIG-V-GF---DCNPMVFAADETG  279 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~-~-~~---d~~~~i~~~~~~~  279 (379)
                      +.++++...|+..++|.+.........+..+ ...+..++++|++..++ + ++   .+.+++|+.....
T Consensus       330 ~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          330 GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7778888888887777544212233445444 55678889999987665 2 22   2467777765543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.75  E-value=6.2e-14  Score=116.82  Aligned_cols=238  Identities=6%  Similarity=-0.063  Sum_probs=165.5

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      ...+.+++++++|++.++...++.|.+|+.. ++... ..+......+.++++.++++..++...++.|..+|.. ++. 
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-   94 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-   94 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence            4678999999999988877678999999988 53333 2333344678999999999877776667889999988 553 


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                      ..+........+..+++.++++++++...++.|..++.. +.   ............+.++++.++++++++...++.|.
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  170 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT---IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG  170 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC---EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence            223322234678999999999887777667888888766 43   22221122446789999999999777766678899


Q ss_pred             EEeccccccccccccCCCccCCcccceEE-EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL  248 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  248 (379)
                      .+|.                   .++... ........+..++++++|++.++....+.|.+||. ++............
T Consensus       171 ~~~~-------------------~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  230 (300)
T 2qc5_A          171 RITN-------------------TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNA  230 (300)
T ss_dssp             EECT-------------------TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred             EECC-------------------CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCC
Confidence            9974                   122211 12223446889999999988777777788999997 33322122222345


Q ss_pred             CeeeEEEecCCcEEEEEe-CCCeEEEEe
Q 016982          249 PLRDVLFVSEKMVIGVGF-DCNPMVFAA  275 (379)
Q Consensus       249 ~i~~~~~s~~~~~l~~~~-d~~~~i~~~  275 (379)
                      .+.+++++++|+++++.. ++.+..|+.
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CceEEEECCCCCEEEeccCCCeEEEECC
Confidence            678999999998777654 466766654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.74  E-value=2.2e-15  Score=141.48  Aligned_cols=232  Identities=13%  Similarity=0.047  Sum_probs=145.0

Q ss_pred             CCCCcEEEEEecCCe---EEEEEec-----CCceEEEEE----eccCCCceEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 016982           19 SPDHAMVAFCPNNNE---VHIYKLI-----QEKWEKLHV----LQKHDQIVSGIDWSVRSNRIVTVSHD-----RNSYVW   81 (379)
Q Consensus        19 s~~~~~l~~~~~dg~---i~i~~~~-----~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw   81 (379)
                      +|+|++++....++.   -.+|...     +++.+.+..    -.+|...+..++|||||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489999887765432   4555543     332222211    12233468899999999999877643     369999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe--------------EEEEEeecCCceeEEEEEee--cCCc
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT--------------VCICYYEQENNWWVSKLIRK--RHDS  145 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------v~i~~~~~~~~~~~~~~~~~--~~~~  145 (379)
                      |+.+++.....   .+...+..++|+|| +.|+.++.++.              |++|++.++...  ...+..  .+..
T Consensus       195 dl~tg~~~~~~---~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--~~lv~~~~~~~~  268 (741)
T 1yr2_A          195 GVADGKPLADE---LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA--DQPVFATPELPK  268 (741)
T ss_dssp             ETTTCCEEEEE---EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG--CEEEECCTTCTT
T ss_pred             ECCCCCCCCcc---CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh--CEEEeccCCCCe
Confidence            99999854431   11223468899999 99998887654              778887655421  112212  2233


Q ss_pred             CEEEEEEcCCCcEEEEeeCCC-----eEEEEeccccccccccccCCCccCCccc--ceEEEeecCCcceEEEEECCCCCE
Q 016982          146 SVTSVAWHPNNVFLATTSTDG-----KCRVFSTFIKGVDIKEKKEGTSSDTKFG--EQILQLDLSFSWAFGVKWSPSGNT  218 (379)
Q Consensus       146 ~v~~~~~~p~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~  218 (379)
                      .+..+.|+|||++|+..+.++     .|.+||+                  ..+  ++...+..+...+.... +|+|+.
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~------------------~~~~~~~~~~l~~~~~~~~~~~-~~dg~~  329 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARV------------------TNGKIGPVTALIPDLKAQWDFV-DGVGDQ  329 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE------------------ETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEEC------------------CCCCCcccEEecCCCCceEEEE-eccCCE
Confidence            588999999999888777543     7999986                  222  21344444444444443 488988


Q ss_pred             EEEEcC----CCeEEEEECCCC-CceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEec
Q 016982          219 LAYVGH----NSMIYFVDDVGP-SPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       219 l~~~~~----d~~i~v~d~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~  276 (379)
                      |+..+.    ++.|.+||+.++ ......+..+...+..++|+ ++.+++ ...++...+|..+
T Consensus       330 l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          330 LWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            887765    356999998774 23323344444456677887 455555 5567777777655

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.73  E-value=7.7e-15  Score=120.46  Aligned_cols=243  Identities=9%  Similarity=-0.056  Sum_probs=160.8

Q ss_pred             ceEEEEEcCCCCEEE-EEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee
Q 016982           56 IVSGIDWSVRSNRIV-TVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW  134 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  134 (379)
                      ...+++++++|+.++ +...++.|.+|+..+......  .......+.+++++++++++++.. ++.|.+||.....   
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~---   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN---   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC--CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC---
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE--eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce---
Confidence            568899999998666 446778999999766542111  122335678999999998666555 8899998876554   


Q ss_pred             EEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC
Q 016982          135 VSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP  214 (379)
Q Consensus       135 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  214 (379)
                       ...+.......+..++++|+++++++...++.|.+|+.                  ...............+..++++|
T Consensus        99 -~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~------------------~~~~~~~~~~~~~~~p~~i~~~~  159 (270)
T 1rwi_B           99 -QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA------------------GSKTQTVLPFTGLNDPDGVAVDN  159 (270)
T ss_dssp             -CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECT------------------TCCSCEECCCCSCCSCCCEEECT
T ss_pred             -EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEEC------------------CCceeEeeccccCCCceeEEEeC
Confidence             22221233357899999999998887777889999974                  11111111112223567899999


Q ss_pred             CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEe-CCCeEEEEecCCCcEEEEEEecccccC
Q 016982          215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGF-DCNPMVFAADETGIWTFIKFLDERKTS  293 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-d~~~~i~~~~~~~~~~~~~~~~~~~~~  293 (379)
                      +|+++++...++.|.+||....... .........+.+++++++|.++++.. ++.+.+|+.+......           
T Consensus       160 ~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-----------  227 (270)
T 1rwi_B          160 SGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-----------  227 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-----------
T ss_pred             CCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-----------
Confidence            9997777777889999998765422 22222225678999999998777654 5577777654322111           


Q ss_pred             CCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccc
Q 016982          294 SSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQED  373 (379)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~  373 (379)
                                                         ....+...+.+++ +.+++    +++++...++.|+++++...+.
T Consensus       228 -----------------------------------~~~~~~~~p~~i~-~~~~g----~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          228 -----------------------------------LPFTGLNTPLAVA-VDSDR----TVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             -----------------------------------CCCCSCSCEEEEE-ECTTC----CEEEEEGGGTEEEEECCCGGGS
T ss_pred             -----------------------------------eccCCCCCceeEE-ECCCC----CEEEEECCCCEEEEEcCCCccc
Confidence                                               0012334577888 66655    8889999999999999987665


Q ss_pred             cc
Q 016982          374 LL  375 (379)
Q Consensus       374 ~~  375 (379)
                      .+
T Consensus       268 ~~  269 (270)
T 1rwi_B          268 HH  269 (270)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=3.2e-15  Score=126.26  Aligned_cols=268  Identities=6%  Similarity=0.014  Sum_probs=174.0

Q ss_pred             cCCeEEEEEecCCceEEEEEec------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeE
Q 016982           30 NNNEVHIYKLIQEKWEKLHVLQ------KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALC  103 (379)
Q Consensus        30 ~dg~i~i~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~  103 (379)
                      .++.|.++|.+++  +....+.      ........+.+. +++..++...++.|.+||..+++.+..+.   .......
T Consensus        15 ~~~~l~~~d~~t~--~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~---~~~~p~~   88 (328)
T 3dsm_A           15 SNATLSYYDPATC--EVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT---GFTSPRY   88 (328)
T ss_dssp             CCBEEEEEETTTT--EEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE---CCSSEEE
T ss_pred             CCceEEEEECCCC--EEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC---CCCCCcE
Confidence            3789999999987  3333321      112345677774 34455555667899999999998666552   3467889


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC----CcCEEEEEEcCCCcEEEEee-CCCeEEEEecccccc
Q 016982          104 VQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH----DSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGV  178 (379)
Q Consensus       104 ~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~  178 (379)
                      ++++++++.+++...++.|.+||..+.+   +...+..+.    ......+++ .+++.+++.. .++.|.++|+     
T Consensus        89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~---~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~-----  159 (328)
T 3dsm_A           89 IHFLSDEKAYVTQIWDYRIFIINPKTYE---ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDT-----  159 (328)
T ss_dssp             EEEEETTEEEEEEBSCSEEEEEETTTTE---EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEET-----
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCe---EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEEC-----
Confidence            9998888544444478999999988776   344442222    013456677 3455555543 4889999996     


Q ss_pred             ccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC----------CeEEEEECCCCCceeeeeeee-c
Q 016982          179 DIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN----------SMIYFVDDVGPSPLAQNVAFR-D  247 (379)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d----------~~i~v~d~~~~~~~~~~~~~~-~  247 (379)
                                   .+++.+..+... .....++++|+|++++++..+          +.|.++|..+.+ +...+... .
T Consensus       160 -------------~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~~~~g  224 (328)
T 3dsm_A          160 -------------ETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFKFKLG  224 (328)
T ss_dssp             -------------TTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEECCTT
T ss_pred             -------------CCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-EEEEEecCCC
Confidence                         556666666543 335788999999977776554          789999988765 33444322 3


Q ss_pred             CCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccc
Q 016982          248 LPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSR  327 (379)
Q Consensus       248 ~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (379)
                      .....++|+|+++.|..+.. .+.+|+........                         ..+                 
T Consensus       225 ~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-------------------------~~~-----------------  261 (328)
T 3dsm_A          225 DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-------------------------RPF-----------------  261 (328)
T ss_dssp             CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-------------------------SCS-----------------
T ss_pred             CCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-------------------------eee-----------------
Confidence            46789999999888776544 66666543322100                         000                 


Q ss_pred             ccccccccceeeeeeecccCCcccceEEEe----ecCceEEEEeCCCccccccC
Q 016982          328 TRGGTHVNCINCIVPLREAGSSRITRFTTS----GLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       328 ~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~----~~Dg~v~iW~~~~~~~~~~~  377 (379)
                        +..+.....+++ +++++   +.++++.    ..++.|.+||.. ++.++.+
T Consensus       262 --~~~~~~~p~gi~-vdp~~---g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          262 --LEFRDTKYYGLT-VNPNN---GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             --BCCCSSCEEEEE-ECTTT---CCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             --ecCCCCceEEEE-EcCCC---CeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence              011234567788 66532   3677777    678999999997 7777654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.72  E-value=2.8e-14  Score=119.87  Aligned_cols=247  Identities=10%  Similarity=-0.000  Sum_probs=158.3

Q ss_pred             CcceeEEEeCCCCcEEEE-------EecCCeEEEEEecCCceEEEEE--eccCCCceEEEEEcCC-CCEEEEEeCCCeEE
Q 016982           10 AQCITCHAWSPDHAMVAF-------CPNNNEVHIYKLIQEKWEKLHV--LQKHDQIVSGIDWSVR-SNRIVTVSHDRNSY   79 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~-------~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~   79 (379)
                      -....+++|+++|+++++       +..++.|.+|+..+++......  ..++...+.+++++++ ++++++ +....|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence            346789999999988887       5778999999987764332221  0124457889999999 654544 4445799


Q ss_pred             EEeccCCceeee-EEee--cCCCceeEEEECCCCCEEEEEeCC---------------CeEEEEEeecCCceeEEEEEee
Q 016982           80 VWNQEGSEWVPT-LVIL--RLNRAALCVQWSPKENKFAVGSGA---------------KTVCICYYEQENNWWVSKLIRK  141 (379)
Q Consensus        80 vw~~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------------~~v~i~~~~~~~~~~~~~~~~~  141 (379)
                      +||.. ++.... ....  .....+.+++++++|+++++...+               +.|..++.. +.   ... + .
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~-~-~  168 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ---MIQ-V-D  168 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC---EEE-E-E
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC---EEE-e-c
Confidence            99988 654322 1100  112357899999999877776554               445555433 22   222 2 2


Q ss_pred             cCCcCEEEEEEc----CCCcEEEEe-eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC-cceEEEEECCC
Q 016982          142 RHDSSVTSVAWH----PNNVFLATT-STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF-SWAFGVKWSPS  215 (379)
Q Consensus       142 ~~~~~v~~~~~~----p~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~  215 (379)
                      .+......++|+    |+++.+..+ ..++.|.+||+....      .      .........+..+. ..+..++++++
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g------~------~~~~~~~~~~~~~~~~~p~~i~~d~~  236 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA------K------IENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT------E------EEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC------c------cccceEEEECCCCCCCCCCceEECCC
Confidence            233456889999    999655544 567899999862000      0      00011223333333 56788999999


Q ss_pred             CCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEe--CCCeEEEEecC
Q 016982          216 GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGF--DCNPMVFAADE  277 (379)
Q Consensus       216 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--d~~~~i~~~~~  277 (379)
                      |+++++...++.|.+||..+++. ...+..+...+.+++|+++|+.|..+.  ++.+..|+...
T Consensus       237 G~l~v~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          237 NNLLVANWGSSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEcCCCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99888877888999999875543 344554556789999999998554333  34676666543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.71  E-value=1.7e-14  Score=121.80  Aligned_cols=235  Identities=11%  Similarity=0.009  Sum_probs=160.4

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      .....+++. +++++++...++.|.+||..++  +.+.++.. ......++++++++..++...++.|.+||..+++...
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~--~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF--KEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC--CEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECccc--EEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence            445677774 3555566666799999999987  55555543 3567899999998444444378999999999988665


Q ss_pred             eEEeec---CCCceeEEEECCCCCEEEEEe--CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           91 TLVILR---LNRAALCVQWSPKENKFAVGS--GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        91 ~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      .+....   .......+++  ++..++++.  .++.|.++|..+.+   ....+ .. ......+.++|+|++++++..+
T Consensus       120 ~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~---~~~~i-~~-g~~p~~i~~~~dG~l~v~~~~~  192 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK---VVDEL-TI-GIQPTSLVMDKYNKMWTITDGG  192 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE---EEEEE-EC-SSCBCCCEECTTSEEEEEBCCB
T ss_pred             EEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe---EEEEE-Ec-CCCccceEEcCCCCEEEEECCC
Confidence            554321   0014567777  345555554  48899999988876   34444 22 2345678999999977776654


Q ss_pred             ----------CeEEEEeccccccccccccCCCccCCcccceEEEeecC-CcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          166 ----------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       166 ----------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                                +.|.++|.                  .+++....+... ......++|+|++++|+++..  .|.+||..
T Consensus       193 ~~~~~~~~~~~~v~~id~------------------~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDA------------------ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             CTTCSSCBCCCEEEEEET------------------TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             ccCCccccCCceEEEEEC------------------CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence                      78999996                  455555555432 235789999999999888765  89999988


Q ss_pred             CCCceeee-eeeecCCeeeEEEec-CCcEEEEE-----eCCCeEEEEec
Q 016982          235 GPSPLAQN-VAFRDLPLRDVLFVS-EKMVIGVG-----FDCNPMVFAAD  276 (379)
Q Consensus       235 ~~~~~~~~-~~~~~~~i~~~~~s~-~~~~l~~~-----~d~~~~i~~~~  276 (379)
                      +++..... +.........++++| +++++++.     .++.+.+|+.+
T Consensus       253 t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          253 ADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            76532111 221245678999999 56666654     46678888876

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.71  E-value=1.2e-13  Score=124.14  Aligned_cols=241  Identities=11%  Similarity=0.043  Sum_probs=161.6

Q ss_pred             CCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc--CCceeeeEEeecC
Q 016982           20 PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE--GSEWVPTLVILRL   97 (379)
Q Consensus        20 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~   97 (379)
                      |.+.++++...++.|.++|..++  +.+..+... ..+..+.|+|||+++++++.|+.|.+||+.  +.+.+..+.   .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~--~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---~  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTY--EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---I  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTC--CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE---C
T ss_pred             CCceEEEEeCCCCeEEEEECCCC--eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe---c
Confidence            34456667777899999999987  566666543 356799999999999999999999999995  666554443   2


Q ss_pred             CCceeEEEEC----CCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEee-c--------C-CcCEEEEEEcCCCcE-EEE
Q 016982           98 NRAALCVQWS----PKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRK-R--------H-DSSVTSVAWHPNNVF-LAT  161 (379)
Q Consensus        98 ~~~v~~~~~~----~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~-~--------~-~~~v~~~~~~p~~~~-l~~  161 (379)
                      ......++|+    |+|+++++++. ++.+.++|..+.+   ..+.+.. +        | ...+..+..++++.. ++.
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~---~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~  315 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE---PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN  315 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC---EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc---EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence            3456899999    69999888776 5899999977766   3333311 1        1 226788888888654 445


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCcee
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~  240 (379)
                      ...+|.|.++|...                .....+..+.. ......+.|+|+|++++++. .++.|.++|+.+++ +.
T Consensus       316 ~~~~g~v~~vd~~~----------------~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-l~  377 (567)
T 1qks_A          316 VKETGKILLVDYTD----------------LNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-LV  377 (567)
T ss_dssp             ETTTTEEEEEETTC----------------SSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-EE
T ss_pred             ecCCCeEEEEecCC----------------Cccceeeeeec-cccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-EE
Confidence            55679999998620                00111223322 33467889999999987655 67899999999875 33


Q ss_pred             eeeee-ec--CCeeeEE-EecC-CcEEEEE--eCCCeEEEEecCCC----cEEEEEEe
Q 016982          241 QNVAF-RD--LPLRDVL-FVSE-KMVIGVG--FDCNPMVFAADETG----IWTFIKFL  287 (379)
Q Consensus       241 ~~~~~-~~--~~i~~~~-~s~~-~~~l~~~--~d~~~~i~~~~~~~----~~~~~~~~  287 (379)
                      ..+.. ..  .+-..+. ++|+ +.+.+++  .++.+.+++.+..+    .|++.+.+
T Consensus       378 ~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i  435 (567)
T 1qks_A          378 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSF  435 (567)
T ss_dssp             EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             EEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEE
Confidence            44432 11  1112333 4776 4555555  35788898877532    26655543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=1.9e-13  Score=113.88  Aligned_cols=236  Identities=7%  Similarity=-0.048  Sum_probs=165.6

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      ...+.+++++++|+++++...++.|..|+.... ... ..+......+..+++.++++++++...++.|..||. +++..
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  132 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGI-IKE-YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR  132 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-EEE-EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence            467899999999998887766789999997632 222 223334557899999999988887777889999998 55432


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                       .+........+..+++.++|+++++...++.|..||. .+.   ............+..++++++++++++...++.|.
T Consensus       133 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  207 (299)
T 2z2n_A          133 -EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG  207 (299)
T ss_dssp             -EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             -EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence             2222223457899999999988777766788999887 444   22221133455688999999999777776788999


Q ss_pred             EEeccccccccccccCCCccCCcccceE-EEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee--eee
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV--AFR  246 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~  246 (379)
                      +||.                   .++.. .....+...+.+++++++|+++++...++.|..||.. +. . ..+  ..+
T Consensus       208 ~~~~-------------------~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~-~~~~~~~~  265 (299)
T 2z2n_A          208 RITT-------------------SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-I-EEYPIQIK  265 (299)
T ss_dssp             EECT-------------------TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-E-EEEECSSS
T ss_pred             EECC-------------------CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-e-EEEeCCCC
Confidence            9984                   12211 1122334568899999999977776678899999983 32 2 222  233


Q ss_pred             cCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          247 DLPLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       247 ~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      ...+.++++ ++|+++++...+.+..++..
T Consensus       266 ~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~  294 (299)
T 2z2n_A          266 SAEPHGICF-DGETIWFAMECDKIGKLTLI  294 (299)
T ss_dssp             SCCEEEEEE-CSSCEEEEETTTEEEEEEEC
T ss_pred             CCccceEEe-cCCCEEEEecCCcEEEEEcC
Confidence            456889999 99998887666777766644

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.70  E-value=7e-14  Score=118.09  Aligned_cols=285  Identities=12%  Similarity=0.020  Sum_probs=178.9

Q ss_pred             EEEeCCCCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------CCCeEE
Q 016982           15 CHAWSPDHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------HDRNSY   79 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~   79 (379)
                      .....|+++.+.+...     ++.|.++|..+.  +.+..+.....+ . ++++|||++++++.          .++.|.
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCC--eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            3556789988877754     579999999887  667777655555 4 99999999887765          357899


Q ss_pred             EEeccCCceeeeEEeec-----CCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982           80 VWNQEGSEWVPTLVILR-----LNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                      +||..+.+.+..+....     .......+.|+|||++++++..  ++.|.++|..+.+   +...+..  .+ + ...+
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~---vv~tI~v--~g-~-~~~~  185 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA---FKRMLDV--PD-C-YHIF  185 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE---EEEEEEC--CS-E-EEEE
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc---EEEEEEC--CC-c-ceee
Confidence            99999998777765422     0125678999999999998874  6899999998887   4555411  11 1 1223


Q ss_pred             cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE----eecCCcce-EEEEEC-CCCCEEEEEcCCC
Q 016982          153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ----LDLSFSWA-FGVKWS-PSGNTLAYVGHNS  226 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v-~~~~~s-p~~~~l~~~~~d~  226 (379)
                      ....+.+++.+.||.+.+.++..                 .++....    +.....++ ....|. ++|++++ .+.+|
T Consensus       186 P~g~~~~~~~~~DG~~~~v~~~~-----------------~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g  247 (386)
T 3sjl_D          186 PTAPDTFFMHCRDGSLAKVAFGT-----------------EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTG  247 (386)
T ss_dssp             EEETTEEEEEETTSCEEEEECCS-----------------SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTS
T ss_pred             cCCCceeEEECCCCCEEEEECCC-----------------CCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCC
Confidence            22346677778888888887631                 1111111    11111122 124554 6776555 56689


Q ss_pred             eEEEEECCCCCc-eeeeee----------eecCCeeeEEEecCCcEEEEEeC-----------CCeEEEEecCCCcEEEE
Q 016982          227 MIYFVDDVGPSP-LAQNVA----------FRDLPLRDVLFVSEKMVIGVGFD-----------CNPMVFAADETGIWTFI  284 (379)
Q Consensus       227 ~i~v~d~~~~~~-~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~d-----------~~~~i~~~~~~~~~~~~  284 (379)
                      .|++.|+.+... ....+.          ........++++++++.+.....           ..+.+++.....   +.
T Consensus       248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---v~  324 (386)
T 3sjl_D          248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---RL  324 (386)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---EE
T ss_pred             EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---EE
Confidence            999999876542 112221          11233456778888776654321           234444443332   22


Q ss_pred             EEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982          285 KFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV  364 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~  364 (379)
                      +.+                                          ..++  .+.+|+ +++|+.  ..++++...++.|.
T Consensus       325 ~~i------------------------------------------~vg~--~~~~la-vs~D~~--~~ly~tn~~~~~Vs  357 (386)
T 3sjl_D          325 AKF------------------------------------------EMGH--EIDSIN-VSQDEK--PLLYALSTGDKTLY  357 (386)
T ss_dssp             EEE------------------------------------------EEEE--EECEEE-ECSSSS--CEEEEEETTTTEEE
T ss_pred             EEE------------------------------------------ECCC--CcceEE-ECCCCC--eEEEEEcCCCCeEE
Confidence            211                                          0122  577888 777761  12444456799999


Q ss_pred             EEeCCCccccccCC
Q 016982          365 TWDLESQEDLLNYH  378 (379)
Q Consensus       365 iW~~~~~~~~~~~~  378 (379)
                      ++|..+++.++.+.
T Consensus       358 ViD~~t~k~~~~i~  371 (386)
T 3sjl_D          358 IHDAESGEELRSVN  371 (386)
T ss_dssp             EEETTTCCEEEEEC
T ss_pred             EEECCCCcEEEEec
Confidence            99999998877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.68  E-value=1.8e-14  Score=135.29  Aligned_cols=240  Identities=10%  Similarity=-0.062  Sum_probs=153.4

Q ss_pred             cceeEEEeCCCCcEEEEEecC-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCe--------
Q 016982           11 QCITCHAWSPDHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRN--------   77 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------   77 (379)
                      ..+..++|||||++||.+..+     ..|++||+.+++...  . ..+...+..++|+|| +.|+.++.++.        
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~--~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA--D-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE--E-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC--c-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            468899999999999987653     369999999884322  1 112222357899999 99988876553        


Q ss_pred             ------EEEEeccCCceeeeEEeec--CCCceeEEEECCCCCEEEEEeCCC-----eEEEEEeecCCceeEEEEEeecCC
Q 016982           78 ------SYVWNQEGSEWVPTLVILR--LNRAALCVQWSPKENKFAVGSGAK-----TVCICYYEQENNWWVSKLIRKRHD  144 (379)
Q Consensus        78 ------i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~~  144 (379)
                            |++|++.++.....+....  +...+..+.|+|||++|+..+.++     .|++||+.++... ..+.+ ..+.
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l-~~~~  316 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-PVTAL-IPDL  316 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-CCEEE-ECSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-ccEEe-cCCC
Confidence                  8899998775322222222  223578999999999988877544     7999999876210 02333 3444


Q ss_pred             cCEEEEEEcCCCcEEEEeeC----CCeEEEEeccccccccccccCCCccCCccc--ceEEEeecCCcceEEEEECCCCCE
Q 016982          145 SSVTSVAWHPNNVFLATTST----DGKCRVFSTFIKGVDIKEKKEGTSSDTKFG--EQILQLDLSFSWAFGVKWSPSGNT  218 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~  218 (379)
                      ..+.... +|+++.|+..+.    ++.|.+||+                  ..+  .....+..+...+..++++ ++.+
T Consensus       317 ~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~------------------~~~~~~~~~l~~~~~~~l~~~~~~-~~~l  376 (741)
T 1yr2_A          317 KAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL------------------SGSTPRFDTVVPESKDNLESVGIA-GNRL  376 (741)
T ss_dssp             SSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC------------------SSSSCEEEEEECCCSSEEEEEEEE-BTEE
T ss_pred             CceEEEE-eccCCEEEEEECCCCCCCEEEEEeC------------------CCCccccEEEecCCCCeEEEEEEE-CCEE
Confidence            4444443 488888887765    345888886                  221  2222333444556677887 5667


Q ss_pred             EEEEcCCCeEEEEECC-CCCceeeeeeee-cCCeeeEEEecCCcEEE-E-Ee---CCCeEEEEecC
Q 016982          219 LAYVGHNSMIYFVDDV-GPSPLAQNVAFR-DLPLRDVLFVSEKMVIG-V-GF---DCNPMVFAADE  277 (379)
Q Consensus       219 l~~~~~d~~i~v~d~~-~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~-~-~~---d~~~~i~~~~~  277 (379)
                      +++...++..++|.+. .+. ....+..+ ...+..+.++|++..|+ + ++   .+.+++|+...
T Consensus       377 v~~~~~dg~~~l~~~~~~g~-~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          377 FASYIHDAKSQVLAFDLDGK-PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEEEETTEEEEEEEETTSC-EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEECCEEEEEEEeCCCC-ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            7777888877766443 222 33445432 45688899999887554 2 22   24566776544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.67  E-value=2.5e-12  Score=109.98  Aligned_cols=277  Identities=7%  Similarity=-0.076  Sum_probs=170.0

Q ss_pred             EEeCCCCcEEEEEec--CC---eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------CCCeEEE
Q 016982           16 HAWSPDHAMVAFCPN--NN---EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------HDRNSYV   80 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~--dg---~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v   80 (379)
                      +...|+++++.+...  ..   .|.+||..++  +.+..+.....+  .++++|||++++.+.          .++.|.+
T Consensus        26 ~~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~--~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             ccCCCCCCEEEEeCCcccCCccEEEEEECCCC--eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence            345578887776643  22   8899999887  566666654444  999999999998875          3678999


Q ss_pred             EeccCCceeeeEEee-cC----CCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEE-EeecCCcCEEEEEE
Q 016982           81 WNQEGSEWVPTLVIL-RL----NRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKL-IRKRHDSSVTSVAW  152 (379)
Q Consensus        81 w~~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  152 (379)
                      ||..+.+.+..+... ..    ......+.|+|||++|++++.  ++.|.++| .+++   +... + . ...   ++.+
T Consensus       102 iD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~---~~~~~i-~-~~~---~~~~  172 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS---SDDQLL-S-SPT---CYHI  172 (373)
T ss_pred             EECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC---EEeEEc-C-CCc---eEEE
Confidence            999988766655432 00    123568999999999999874  47899999 7776   3444 3 1 111   2445


Q ss_pred             cCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-----cCCcc-eEEEEECCCCCEEEEEcCC
Q 016982          153 HPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-----LSFSW-AFGVKWSPSGNTLAYVGHN  225 (379)
Q Consensus       153 ~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-v~~~~~sp~~~~l~~~~~d  225 (379)
                      .|++ +.+++.+.||.+.++|.                   .++.+....     ....+ .....+.+++..++..+..
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~-------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  233 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDH-------------------AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS  233 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEEC-------------------CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCC
Confidence            5655 55666778899999984                   122221110     11111 2335667766555555578


Q ss_pred             CeEEEEECCCCCc-eeeeeeee----------cCCeeeEEEecCCcEEEEEeC-----------CCeEEEEecCCCcEEE
Q 016982          226 SMIYFVDDVGPSP-LAQNVAFR----------DLPLRDVLFVSEKMVIGVGFD-----------CNPMVFAADETGIWTF  283 (379)
Q Consensus       226 ~~i~v~d~~~~~~-~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~d-----------~~~~i~~~~~~~~~~~  283 (379)
                      +.+.+.|+..... ....+...          ......+.++|+++.+....+           +.+.+++....   ++
T Consensus       234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~v  310 (373)
T 2mad_H          234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QT  310 (373)
T ss_pred             ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---EE
Confidence            8999999875432 11222111          112333667777665543221           23444443322   22


Q ss_pred             EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccc-eEEEee-cCc
Q 016982          284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT-RFTTSG-LDG  361 (379)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-~l~t~~-~Dg  361 (379)
                      ...+                                          ..++  ...+++ +++|+    + +++++. .++
T Consensus       311 v~~i------------------------------------------~~g~--~p~~i~-~s~Dg----~~~l~v~~~~~~  341 (373)
T 2mad_H          311 SSQI------------------------------------------SLGH--DVDAIS-VAQDG----GPDLYALSAGTE  341 (373)
T ss_pred             EEEE------------------------------------------ECCC--CcCeEE-ECCCC----CeEEEEEcCCCC
Confidence            1111                                          0122  466788 77776    6 777777 589


Q ss_pred             eEEEEeCCCcccccc
Q 016982          362 KIVTWDLESQEDLLN  376 (379)
Q Consensus       362 ~v~iW~~~~~~~~~~  376 (379)
                      .|.++|+.+++.++.
T Consensus       342 ~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          342 VLHIYDAGAGDQDQS  356 (373)
T ss_pred             eEEEEECCCCCEEee
Confidence            999999999888766

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.1e-13  Score=113.54  Aligned_cols=190  Identities=11%  Similarity=-0.040  Sum_probs=136.0

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeeeEEeecCC-CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC
Q 016982           65 RSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLN-RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH  143 (379)
Q Consensus        65 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~  143 (379)
                      .++.|++++.++.|.+||.++++.+..+.  .+. ..+.++.+.|+|++++  +.++.|..||. +++   ..-.+....
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~---~~W~~~~~~   75 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR---ELWNIAAPA   75 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEE--CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC---EEEEEECCT
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeC--CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC---EEEEEcCCC
Confidence            35789999999999999999998766553  333 4688999999999888  34678999887 555   333341222


Q ss_pred             CcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeec------CCcceEEEEECCCC
Q 016982          144 DSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL------SFSWAFGVKWSPSG  216 (379)
Q Consensus       144 ~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~  216 (379)
                      ...+.++.+.|+|+++++.+. ++.+..+|                   ..++.+..+..      +......+++.++|
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd-------------------~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G  136 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVN-------------------MKGEVLSKTEFETGIERPHAQFRQINKNKKG  136 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEEC-------------------TTSCEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEe-------------------CCCCEEEEEeccCCCCcccccccCceECCCC
Confidence            356888999999999998877 77777776                   34555554431      11234566789999


Q ss_pred             CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCC-CeEEEEec-CCCcEEEE
Q 016982          217 NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDC-NPMVFAAD-ETGIWTFI  284 (379)
Q Consensus       217 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~-~~~i~~~~-~~~~~~~~  284 (379)
                      +++++...++.|.+||.. ++ .+..+... ..+.++.+.++|.+++++.++ .+..++.. ..-.|++.
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~-~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQ-LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SC-EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             CEEEEecCCCEEEEECCC-CC-EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            999999999999999987 55 34555533 456678888999988866655 56666665 33356653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.66  E-value=8.5e-13  Score=109.80  Aligned_cols=232  Identities=11%  Similarity=0.055  Sum_probs=152.8

Q ss_pred             CcceeEEEeCCCC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      ..-..+..|+|++ .++++...++.|+.||..++..   ..+. ....+.+++++|+|+++++ . +..|.+||..+++.
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA   85 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence            3456688999954 5566666789999999988632   2222 3467899999999995554 4 56799999988875


Q ss_pred             eeeEEeec--CCCceeEEEECCCCCEEEEEeCC---------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           89 VPTLVILR--LNRAALCVQWSPKENKFAVGSGA---------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        89 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      ........  ....+..++++|+|+++++....         ..-.+|.++....  ... + .........++|+|+++
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~-~-~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH--VKK-Y-FDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--EEE-E-EEEESBEEEEEECTTSC
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--EEE-E-eeccccccceEEcCCCC
Confidence            43332211  12457889999999966654322         3346666664432  222 2 23334568899999998


Q ss_pred             EEE-EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          158 FLA-TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       158 ~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      .|+ +.+.++.|.+|++..     ....      ....+....+..+...+..++++++|++.++....+.|..||..++
T Consensus       162 ~lyv~~~~~~~i~~~~~d~-----~~G~------~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDL-----QTGQ------ISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECT-----TTCC------EEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             EEEEecCCCCcEEEEeccC-----CCCc------ccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            664 455678899998620     0000      0011223333333456789999999998887777889999998766


Q ss_pred             CceeeeeeeecCCeeeEEEe-cCCcEEE
Q 016982          237 SPLAQNVAFRDLPLRDVLFV-SEKMVIG  263 (379)
Q Consensus       237 ~~~~~~~~~~~~~i~~~~~s-~~~~~l~  263 (379)
                      + ++..+..+...+++++|. |+++.|.
T Consensus       231 ~-~~~~i~~p~~~~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          231 K-RLQTVKLPVDKTTSCCFGGKNYSEMY  257 (297)
T ss_dssp             C-EEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred             e-EEEEEECCCCCceEEEEeCCCCCEEE
Confidence            5 446666555678999998 7876554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.66  E-value=1.3e-12  Score=108.82  Aligned_cols=235  Identities=6%  Similarity=-0.067  Sum_probs=161.5

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..+.+++++++|+++++...++.|..||.. ++.. ...+......+.++++.++++++++...++.|..++.. ++.. 
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-  137 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-  137 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-
Confidence            578899999999988777667899999987 4332 22333344678999999999888777667899999987 5433 


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEE
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV  170 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v  170 (379)
                      .+........+..+++.++++++++...++.|..++. .+.   ............+..++++++++++++....+.|.+
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  213 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGK---LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR  213 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCc---EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence            2222223467899999999996666666788888877 333   222211234457889999999987777766778999


Q ss_pred             EeccccccccccccCCCccCCcccceEE-EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCC
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLP  249 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  249 (379)
                      |+.                   .++... .+......+.+++++++|++.++...++.|..||.. +......+......
T Consensus       214 ~~~-------------------~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  273 (300)
T 2qc5_A          214 ITT-------------------TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAE  273 (300)
T ss_dssp             ECT-------------------TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCC
T ss_pred             EcC-------------------CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCc
Confidence            974                   122211 122334568899999999977777677899999973 32111122223456


Q ss_pred             eeeEEEecCCcEEEEEeCCCeEEEE
Q 016982          250 LRDVLFVSEKMVIGVGFDCNPMVFA  274 (379)
Q Consensus       250 i~~~~~s~~~~~l~~~~d~~~~i~~  274 (379)
                      +.+++++++|+++++... .+..++
T Consensus       274 ~~~i~~~~~g~l~v~~~~-~i~~~~  297 (300)
T 2qc5_A          274 PHGITFGKDGSVWFALKC-KIGKLN  297 (300)
T ss_dssp             CCCEEECTTSCEEEECSS-EEEEEE
T ss_pred             cceeEeCCCCCEEEEccC-ceEEeC
Confidence            889999999998877663 555444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.65  E-value=7e-13  Score=115.07  Aligned_cols=233  Identities=11%  Similarity=-0.018  Sum_probs=155.4

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC--eEEEEeccCCce
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR--NSYVWNQEGSEW   88 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~   88 (379)
                      .....++|+++++++++...++.|++||..++.  ....... ..... ++|+|+++.|+++..++  .|.+++..++..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~--~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK--VTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTE--EEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCE--EEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            467899999999988887778999999998873  3333333 22334 99999999998888765  788888876643


Q ss_pred             eeeE-Eeec-CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEE----eecCCcCE--EEEEEcCC-CcEE
Q 016982           89 VPTL-VILR-LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLI----RKRHDSSV--TSVAWHPN-NVFL  159 (379)
Q Consensus        89 ~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~----~~~~~~~v--~~~~~~p~-~~~l  159 (379)
                      ...+ .... ....+.+++++|++..|+++..++.|+.||......    ..+    ..+....-  ..++|+|+ +.++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            2222 1112 346678999999555555677788899998876651    221    11222222  38999995 6666


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC---------------CcceEEEEECCCCCEEEEEc-
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS---------------FSWAFGVKWSPSGNTLAYVG-  223 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~~l~~~~-  223 (379)
                      ++-..++.|+.|+...                   . +..+.++               -.....++++|+|+++++-. 
T Consensus       283 v~d~~~~~I~~~~~~g-------------------~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~  342 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDG-------------------E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF  342 (409)
T ss_dssp             EEETTTTEEEEECTTC-------------------C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT
T ss_pred             EEeCCCCEEEEEecCC-------------------C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC
Confidence            6666788999998631                   1 1111111               13478999999999877777 


Q ss_pred             CCCeEEEEECCCCCceeeeeeee---------------cCCeeeEEEecCCcEEEEEeC-CCeEEE
Q 016982          224 HNSMIYFVDDVGPSPLAQNVAFR---------------DLPLRDVLFVSEKMVIGVGFD-CNPMVF  273 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~d-~~~~i~  273 (379)
                      .++.|+.|++.++.  +..+.++               -.....++++++|.++++... +.|+.+
T Consensus       343 ~~~~I~~~~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          343 KGYCLRKLDILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             TTCEEEEEETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCEEEEEECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            78999999976653  2344333               134778999999887775543 344443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.61  E-value=3e-14  Score=120.82  Aligned_cols=173  Identities=10%  Similarity=0.085  Sum_probs=130.8

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCc---------eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK---------WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      +++.+++++...++++|+.+ .+.+|+++.-.         .+..... .+.. |+.++|  +++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            68999999999999999887 66779976432         2221222 3556 999999  88999998 789999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +.+.......  ..+..++.++.+.+.  .+++++.||.|.+||+.....   ..     +...|+|++|+|+|  ++.|
T Consensus       113 v~sl~~~~~~--~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~---~~-----~~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          113 LEELSEFRTV--TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST---KQ-----LAQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             SSSTTCEEEE--EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE---EE-----EEESEEEEEECSSE--EEEE
T ss_pred             chhhhccCcc--ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc---cc-----ccCCceEEEEcCCc--eEEE
Confidence            9877633333  456777888887754  388899999999999987762   21     34589999999999  6778


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccce--EEEe------e---cCCcceEEEEECCCCCEEEEE
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ--ILQL------D---LSFSWAFGVKWSPSGNTLAYV  222 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~---~~~~~v~~~~~sp~~~~l~~~  222 (379)
                      ..||.+++|+.                  ...+.  ..++      .   .|...|.++.|.+++.++++-
T Consensus       179 ~~dg~i~~~~~------------------~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          179 LKDRSFQSFAW------------------RNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             ETTSCEEEEEE------------------ETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EcCCcEEEEcC------------------CCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            89999999986                  22222  3334      2   367889999999999988873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.61  E-value=5.6e-12  Score=106.26  Aligned_cols=229  Identities=9%  Similarity=-0.037  Sum_probs=145.7

Q ss_pred             ceeEEEeCCCC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           12 CITCHAWSPDH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        12 ~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      -..+.+|+|++ .++++...++.|..|+..+++.   ..+. ....+.+++|+|+|+++++. . ..|.+||..+++...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK---TVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---EEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE---EEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence            35688999975 4556666788999999987632   2222 24578999999999877654 4 459999998887433


Q ss_pred             eEEeec--CCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-e
Q 016982           91 TLVILR--LNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-S  163 (379)
Q Consensus        91 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~  163 (379)
                      ......  ....+.++.++|+|+++++...+    +...||.++.+.    ...+ .........++|+|+++.++.+ +
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~----~~~~-~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK----VTKL-FADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE----EEEE-EEEESSEEEEEECTTSCEEEEEET
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc----EEEe-eCCCcccCCeEEcCCCCEEEEEEC
Confidence            221111  12468899999999976654321    234455554332    2222 2233456789999999866554 4


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      .++.|.+|++..     .....     ....+.+..+......+..++++++|++.++...++.|.+||. +++ .+..+
T Consensus       199 ~~~~I~~~d~~~-----~~Gl~-----~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~-~~~~i  266 (326)
T 2ghs_A          199 KVNRLMRVPLDA-----RTGLP-----TGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGN-HIARY  266 (326)
T ss_dssp             TTCEEEEEEBCT-----TTCCB-----SSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCC-EEEEE
T ss_pred             CCCEEEEEEccc-----ccCCc-----ccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCC-EEEEE
Confidence            578899998620     00000     0001222333333455788999999998777666789999997 333 44555


Q ss_pred             eeecCCeeeEEEe-cCCcEEE
Q 016982          244 AFRDLPLRDVLFV-SEKMVIG  263 (379)
Q Consensus       244 ~~~~~~i~~~~~s-~~~~~l~  263 (379)
                      ..+...+.+++|+ +++..|.
T Consensus       267 ~~~~~~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          267 EVPGKQTTCPAFIGPDASRLL  287 (326)
T ss_dssp             ECSCSBEEEEEEESTTSCEEE
T ss_pred             ECCCCCcEEEEEecCCCCEEE
Confidence            5555678999998 8876554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.60  E-value=1.8e-12  Score=108.35  Aligned_cols=236  Identities=9%  Similarity=-0.034  Sum_probs=148.4

Q ss_pred             eeccCcceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            6 VHQFAQCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      +...........|+|+|+ ++++...++.|..|+.. ++   ...+..+...+..++++++|+++++...++.|.+|+..
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence            444455677899999998 56666678999999874 42   23344456678999999999876665566789999986


Q ss_pred             CCceeeeEEeec--CCCceeEEEECCCCCEEEE----EeC-------------CCeEEEEEeecCCceeEEEEEeecCCc
Q 016982           85 GSEWVPTLVILR--LNRAALCVQWSPKENKFAV----GSG-------------AKTVCICYYEQENNWWVSKLIRKRHDS  145 (379)
Q Consensus        85 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~----~~~-------------d~~v~i~~~~~~~~~~~~~~~~~~~~~  145 (379)
                       ++.........  ....+..+++.|+|+++++    |..             .+.|..+|..++..    ..+ . ...
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~----~~~-~-~~~  188 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL----QRM-A-DLD  188 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC----EEE-E-EES
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE----EEE-e-cCC
Confidence             54322211111  1134678999999998876    332             23455555444442    222 2 234


Q ss_pred             CEEEEEEcCCCcEEEEeeCC------CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE
Q 016982          146 SVTSVAWHPNNVFLATTSTD------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL  219 (379)
Q Consensus       146 ~v~~~~~~p~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  219 (379)
                      ....++|+|+++.|+.+...      +.|.+|++.....             ...+...  ....+....++++++|++.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-------------~~~~~~~--~~~~~~pdgi~~d~~G~lw  253 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-------------HDRRHFA--SVPDGLPDGFCVDRGGWLW  253 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-------------EEEEEEE--CCSSSCCCSEEECTTSCEE
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-------------cCCeEEE--ECCCCCCCeEEECCCCCEE
Confidence            56789999999977776654      6899998621000             0001111  1123345678999999955


Q ss_pred             EEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEE
Q 016982          220 AYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMV  272 (379)
Q Consensus       220 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i  272 (379)
                      ++ .. +.|.+|+.. ++ .+..+..+. .+.+++|+++++.|..+..+.+..
T Consensus       254 v~-~~-~gv~~~~~~-g~-~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          254 SS-SG-TGVCVFDSD-GQ-LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EC-CS-SEEEEECTT-SC-EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             Ee-cC-CcEEEECCC-CC-EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            44 44 459999974 33 334554433 588999999888777555555443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.59  E-value=5.3e-12  Score=108.62  Aligned_cols=276  Identities=11%  Similarity=0.027  Sum_probs=173.7

Q ss_pred             CCCcEEEEEecC-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEecc
Q 016982           20 PDHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------HDRNSYVWNQE   84 (379)
Q Consensus        20 ~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~vw~~~   84 (379)
                      ++++++++....     +.|.++|..+.  +.+..+..-..+  .++++||+++|+++.          .++.|.++|..
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            467766665442     69999999987  677777655555  899999999887775          36789999999


Q ss_pred             CCceeeeEEeecC-----CCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC-
Q 016982           85 GSEWVPTLVILRL-----NRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-  156 (379)
Q Consensus        85 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-  156 (379)
                      +.+.+..+.+.+.     ......+.|+|||++++++..  ++.|.+.|..+.+   +...+....   .  ....|++ 
T Consensus       158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k---vv~~I~v~g---~--~~~~p~g~  229 (426)
T 3c75_H          158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT---FDRMLDVPD---C--YHIFPASP  229 (426)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE---EEEEEECCS---E--EEEEEEET
T ss_pred             CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe---EEEEEEcCC---c--eeeccCCC
Confidence            9987776654201     234578999999999999874  5789999988877   444442211   1  2233333 


Q ss_pred             cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEE----EeecCCcc-eEEEEECCCCCEEEEEcCCCeEEEE
Q 016982          157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL----QLDLSFSW-AFGVKWSPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-v~~~~~sp~~~~l~~~~~d~~i~v~  231 (379)
                      +.+++.+.||.+.+.+..                  .++...    .+.....+ ...+.|.+++..++..+..+.+.+.
T Consensus       230 ~~~v~~~~dG~~~~V~~~------------------~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~Vi  291 (426)
T 3c75_H          230 TVFYMNCRDGSLARVDFA------------------DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQA  291 (426)
T ss_dssp             TEEEEEETTSSEEEEECC------------------TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEE
T ss_pred             cEEEEEcCCCCEEEEECC------------------CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEE
Confidence            455556667776666641                  111111    11111111 1235779998888777888999999


Q ss_pred             ECCCCCcee-eeee----------eecCCeeeEEEecCCcEEEEEe-----------CCCeEEEEecCCCcEEEEEEecc
Q 016982          232 DDVGPSPLA-QNVA----------FRDLPLRDVLFVSEKMVIGVGF-----------DCNPMVFAADETGIWTFIKFLDE  289 (379)
Q Consensus       232 d~~~~~~~~-~~~~----------~~~~~i~~~~~s~~~~~l~~~~-----------d~~~~i~~~~~~~~~~~~~~~~~  289 (379)
                      |+......+ ..+.          ........++++|+++.+....           .+.+.+++.........+.    
T Consensus       292 D~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~----  367 (426)
T 3c75_H          292 DLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE----  367 (426)
T ss_dssp             EECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE----
T ss_pred             eccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE----
Confidence            986543111 1110          0112233478999877555321           2346666655433222111    


Q ss_pred             cccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccc-eEEEee-cCceEEEEe
Q 016982          290 RKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRIT-RFTTSG-LDGKIVTWD  367 (379)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~-~l~t~~-~Dg~v~iW~  367 (379)
                                                               .+.  ...+++ +++++    + +++++. .++.|.++|
T Consensus       368 -----------------------------------------vg~--~P~gia-~spDg----~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          368 -----------------------------------------LGH--EIDSIN-VSQDA----EPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             -----------------------------------------EEE--EECEEE-ECCSS----SCEEEEEETTTTEEEEEE
T ss_pred             -----------------------------------------CCC--CcCeEE-EccCC----CEEEEEEcCCCCeEEEEE
Confidence                                                     111  366777 77776    6 777776 699999999


Q ss_pred             CCCccccccC
Q 016982          368 LESQEDLLNY  377 (379)
Q Consensus       368 ~~~~~~~~~~  377 (379)
                      +.+++.++.+
T Consensus       400 ~~t~kvv~tI  409 (426)
T 3c75_H          400 AATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            9999887664

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.57  E-value=2e-12  Score=109.73  Aligned_cols=173  Identities=10%  Similarity=0.004  Sum_probs=129.2

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc---------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE---------WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY  126 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~  126 (379)
                      +++.+++++...++++|+.++ +.+|++...+         ..+... ..+.. |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            689999999999999999874 6679875433         222122 24566 999999  89999999 789999999


Q ss_pred             eecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcc
Q 016982          127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSW  206 (379)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (379)
                      +.....   .... ..+...+.++.+.+.  .+++++.||.+.+||+                  ..+....    +...
T Consensus       113 v~sl~~---~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl------------------~~~~~~~----~~~~  164 (388)
T 1xip_A          113 LEELSE---FRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDL------------------RTKSTKQ----LAQN  164 (388)
T ss_dssp             SSSTTC---EEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEET------------------TTCCEEE----EEES
T ss_pred             chhhhc---cCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEc------------------cCCcccc----ccCC
Confidence            987763   2233 466777888877654  3888899999999997                  3333322    2346


Q ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCce-eeee------e---eecCCeeeEEEecCCcEEEE
Q 016982          207 AFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL-AQNV------A---FRDLPLRDVLFVSEKMVIGV  264 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~------~---~~~~~i~~~~~s~~~~~l~~  264 (379)
                      |++++|||+|  ++.+..||.+++|+....... ...+      .   .|...|.++.|.+++.++++
T Consensus       165 Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          165 VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999999999  677889999999987665410 2334      2   25678999999999998874

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.57  E-value=2.3e-11  Score=104.04  Aligned_cols=236  Identities=7%  Similarity=-0.039  Sum_probs=149.7

Q ss_pred             EEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccC-------CCceEEEEEcCCCCEEEEEeC--C
Q 016982           15 CHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKH-------DQIVSGIDWSVRSNRIVTVSH--D   75 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d   75 (379)
                      .++++|||++++++.          .++.|.+||..+.  +.+..+...       ......++|+|||++|+++..  +
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~--~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~  147 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG  147 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC--cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC
Confidence            899999999998875          3578999999875  444443221       123458999999999998874  4


Q ss_pred             CeEEEEeccCCceeee-EEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEE--EEeecCCcC-EEEE
Q 016982           76 RNSYVWNQEGSEWVPT-LVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSK--LIRKRHDSS-VTSV  150 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~~~~~-v~~~  150 (379)
                      +.|.++| .+++.... +.   ...   ++.+.|++ +.+++.+.||.+.+++. +++......  .. .....+ ....
T Consensus       148 ~~v~viD-~t~~~~~~~i~---~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~-~~~~~p~~~~~  218 (373)
T 2mad_H          148 PAVGLVV-QGGSSDDQLLS---SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM-LTAAQNLLTQP  218 (373)
T ss_pred             CeEEEEE-CCCCEEeEEcC---CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc-ccCCcceeecc
Confidence            7899999 98876554 32   122   24455554 45566677899999998 655211110  00 011112 2334


Q ss_pred             EEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec----------CCcceEEEEECCCCCEEE
Q 016982          151 AWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL----------SFSWAFGVKWSPSGNTLA  220 (379)
Q Consensus       151 ~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~sp~~~~l~  220 (379)
                      .+.+++..++..+..+.+.+.|+....                ...+..+..          .......+.++|+++.++
T Consensus       219 ~~~~~~~~~~~~~~~~~v~vid~~~~~----------------~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          219 AQANKSGRIVWPVYSGKILQADISAAG----------------ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eeEecCCEEEEEcCCceEEEEeccCCc----------------ceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            566666555555578889999863110                011111110          122244578999998887


Q ss_pred             EEcC----------CCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEEE--eCCCeEEEEecCCC
Q 016982          221 YVGH----------NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGVG--FDCNPMVFAADETG  279 (379)
Q Consensus       221 ~~~~----------d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~--~d~~~~i~~~~~~~  279 (379)
                      ++..          .+.|.++|..+.+ .+..+.. .....+++|+|||+ +++++  .++.+.+++.....
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~-vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQ-TSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCE-EEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            7543          3589999998876 3456643 44578999999998 55544  37889999877654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.56  E-value=2.7e-12  Score=107.66  Aligned_cols=240  Identities=10%  Similarity=0.058  Sum_probs=150.9

Q ss_pred             CceEEEEEcCCCCEEEE-------EeCCCeEEEEeccCCceeeeEE--eecCCCceeEEEECCC-CCEEEEEeCCCeEEE
Q 016982           55 QIVSGIDWSVRSNRIVT-------VSHDRNSYVWNQEGSEWVPTLV--ILRLNRAALCVQWSPK-ENKFAVGSGAKTVCI  124 (379)
Q Consensus        55 ~~v~~~~~~~~~~~l~~-------~~~d~~i~vw~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i  124 (379)
                      ....+++|+++++.+++       ...++.|.+||..+++......  ...+...+..++++++ ++++++. ..+.|.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~   96 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence            45679999999987777       5677899999988876432211  0013456889999999 6655444 4457888


Q ss_pred             EEeecCCceeEEEE-Eee---cCCcCEEEEEEcCCCcEEEEeeCC---------------CeEEEEeccccccccccccC
Q 016982          125 CYYEQENNWWVSKL-IRK---RHDSSVTSVAWHPNNVFLATTSTD---------------GKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       125 ~~~~~~~~~~~~~~-~~~---~~~~~v~~~~~~p~~~~l~~~~~d---------------~~i~v~d~~~~~~~~~~~~~  185 (379)
                      ||.+ +.   .... ...   .....+.+++++|+++++++...+               +.|..++.            
T Consensus        97 ~d~~-g~---~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------  160 (314)
T 1pjx_A           97 VQTD-GT---FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT------------  160 (314)
T ss_dssp             EETT-SC---EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT------------
T ss_pred             EeCC-CC---EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC------------
Confidence            8877 44   2222 100   112457899999999887776554               45666653            


Q ss_pred             CCccCCcccceEEEeecCCcceEEEEEC----CCCCEEEEE-cCCCeEEEEECC-CCCc----eeeeeeeec-CCeeeEE
Q 016982          186 GTSSDTKFGEQILQLDLSFSWAFGVKWS----PSGNTLAYV-GHNSMIYFVDDV-GPSP----LAQNVAFRD-LPLRDVL  254 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~~~~l~~~-~~d~~i~v~d~~-~~~~----~~~~~~~~~-~~i~~~~  254 (379)
                            . ++... +..+......++|+    |+++.|+.+ ..++.|.+||+. .+..    ....+..+. ..+..++
T Consensus       161 ------~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~  232 (314)
T 1pjx_A          161 ------D-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             ------T-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             ------C-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence                  1 22222 22222346789999    999765544 567899999976 2221    112222222 4578899


Q ss_pred             EecCCcEEEEE-eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccc
Q 016982          255 FVSEKMVIGVG-FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTH  333 (379)
Q Consensus       255 ~s~~~~~l~~~-~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  333 (379)
                      ++++|+++++. .++.+..|+.+........                                              ..+
T Consensus       233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~----------------------------------------------~~~  266 (314)
T 1pjx_A          233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRI----------------------------------------------RCP  266 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEE----------------------------------------------ECS
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE----------------------------------------------eCC
Confidence            99999988765 4567777764422111110                                              123


Q ss_pred             ccceeeeeeecccCCcccc-eEEEeecCceEEEEeCCC
Q 016982          334 VNCINCIVPLREAGSSRIT-RFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       334 ~~~v~~~~~~~~~~~~~~~-~l~t~~~Dg~v~iW~~~~  370 (379)
                      ...+.+++ +++++    + ++++...++.|..|++..
T Consensus       267 ~~~~~~i~-~~~dg----~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          267 FEKPSNLH-FKPQT----KTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SSCEEEEE-ECTTS----SEEEEEETTTTEEEEEECSS
T ss_pred             CCCceeEE-ECCCC----CEEEEEeCCCCeEEEEeCCC
Confidence            45688888 66665    6 566666778999999875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.55  E-value=4.5e-12  Score=107.68  Aligned_cols=242  Identities=10%  Similarity=0.011  Sum_probs=149.6

Q ss_pred             cCcceeEEEeCCCCcEEEEEec--CCeEEEEEecCCceEEEEEec-------cCCCceEEEEEcCCCCEEEEEeC-----
Q 016982            9 FAQCITCHAWSPDHAMVAFCPN--NNEVHIYKLIQEKWEKLHVLQ-------KHDQIVSGIDWSVRSNRIVTVSH-----   74 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----   74 (379)
                      +...+..++++|+|+++++...  ++.++||.+.++  + +..+.       .+-..+..++++++++++++-..     
T Consensus        15 ~~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           15 LSLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--G-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKS   91 (343)
T ss_dssp             ESSCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--E-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTS
T ss_pred             cCCCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--C-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCC
Confidence            3468899999999999888642  343566666544  2 22222       24467899999999876555433     


Q ss_pred             CCeEEEEeccCCceeeeEEeec----CCCceeEEEECCCCCEE-EEEe---CCCeEEEEEeecCCceeEEEEEeecC---
Q 016982           75 DRNSYVWNQEGSEWVPTLVILR----LNRAALCVQWSPKENKF-AVGS---GAKTVCICYYEQENNWWVSKLIRKRH---  143 (379)
Q Consensus        75 d~~i~vw~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l-~~~~---~d~~v~i~~~~~~~~~~~~~~~~~~~---  143 (379)
                      ++.|.+||+.+++....+.+..    +...+..+++++++..+ ++..   .++.|.+||+.++..   .+.+ ..|   
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~---~r~~-~~~~~~  167 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA---ARVL-QGYPGI  167 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE---EEEC-TTCTTT
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE---EEEe-cCCCcc
Confidence            5789999999888666554321    22356899999865444 4444   578899999876652   2222 111   


Q ss_pred             --------------------------CcCEEEEEEcCCCcEEEEeeCCC-eEEEEeccccccccccccCCCccCCcccce
Q 016982          144 --------------------------DSSVTSVAWHPNNVFLATTSTDG-KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ  196 (379)
Q Consensus       144 --------------------------~~~v~~~~~~p~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
                                                ...+..++|+|+++.|+.+...+ .+..++...    .+....   ...+....
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~----~~~~~~---~~~~~~~~  240 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD----LSNLQL---TDAELGSK  240 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHH----HTCTTC---CHHHHHTT
T ss_pred             cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHH----hcCCCC---Chhhhhcc
Confidence                                      12368899999998888877665 444443210    000000   00000000


Q ss_pred             EEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEEEEEe
Q 016982          197 ILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       197 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~  266 (379)
                      +.. .++......++++++|.++++...++.|.+||..++. ....... ....+.+++|.++|++++++.
T Consensus       241 ~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          241 IER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             CEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred             eEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeC
Confidence            111 1223345679999999999988889999999974443 2122221 234578999999988777554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.54  E-value=1.1e-10  Score=101.30  Aligned_cols=194  Identities=9%  Similarity=-0.064  Sum_probs=124.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC--eEEEEEeecCCce
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK--TVCICYYEQENNW  133 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~  133 (379)
                      ....|+|+++++++++...++.|++||..++.......  . ..... ++|+|+++.|+++..++  .|.+++.......
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE--T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec--c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence            56789999999877777777899999998887544332  2 23334 99999999998888766  6777776554321


Q ss_pred             eEEEEEeec-CCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE----eecCCcce-
Q 016982          134 WVSKLIRKR-HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ----LDLSFSWA-  207 (379)
Q Consensus       134 ~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v-  207 (379)
                      .....+ .. ....+.+++++|++..|+.+..++.|+.||..                  .+.....    ..+....- 
T Consensus       208 ~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~------------------~~~~~~~~~~~~~g~~~~~P  268 (409)
T 3hrp_A          208 TRIGQL-GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK------------------TQEVTLIKQLELSGSLGTNP  268 (409)
T ss_dssp             EEEEEC-CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT------------------TCCEEEEEECCCCSCCCCSS
T ss_pred             EEeeec-cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC------------------CCCEEEEecccccCCCCCCc
Confidence            111111 12 44567889999955455556678899999862                  2221111    11111211 


Q ss_pred             -EEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeeeeec---------------CCeeeEEEecCCcEEEEEe--CC
Q 016982          208 -FGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD---------------LPLRDVLFVSEKMVIGVGF--DC  268 (379)
Q Consensus       208 -~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~--d~  268 (379)
                       ..++|+|+ +.++++-..++.|+.|+....   ...+.++.               .....++++++|+++++..  +.
T Consensus       269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~  345 (409)
T 3hrp_A          269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY  345 (409)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred             cccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence             28999995 666666667889999987653   12332221               3367899999999776644  45


Q ss_pred             CeEEEEe
Q 016982          269 NPMVFAA  275 (379)
Q Consensus       269 ~~~i~~~  275 (379)
                      .|+.|+.
T Consensus       346 ~I~~~~~  352 (409)
T 3hrp_A          346 CLRKLDI  352 (409)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            6666664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=4e-11  Score=99.65  Aligned_cols=198  Identities=9%  Similarity=0.088  Sum_probs=124.6

Q ss_pred             ccCCCceEEEEEcCCCCE-EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec
Q 016982           51 QKHDQIVSGIDWSVRSNR-IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ  129 (379)
Q Consensus        51 ~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~  129 (379)
                      .....--.+..|+|+++. +++...++.|..||..+++. ..   ......+.+++++++|++++. . ++.|.+||.++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~---~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~   82 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QR---VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE   82 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EE---EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EE---EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence            333445568899996654 45555678999999988763 22   234578999999999995544 4 56788888876


Q ss_pred             CCceeEEEEEeec----CCcCEEEEEEcCCCcEEEEeeCC---------CeEEEEeccccccccccccCCCccCCcccce
Q 016982          130 ENNWWVSKLIRKR----HDSSVTSVAWHPNNVFLATTSTD---------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ  196 (379)
Q Consensus       130 ~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
                      +.    .+.+...    ....+.+++++|+|+++++....         ..-.||.+.                 ..++.
T Consensus        83 g~----~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d-----------------~~g~~  141 (297)
T 3g4e_A           83 QS----AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF-----------------PDHHV  141 (297)
T ss_dssp             TE----EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC-----------------TTSCE
T ss_pred             Cc----EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE-----------------CCCCE
Confidence            65    2222111    22457899999999976654321         234555441                 12222


Q ss_pred             EEEeecCCcceEEEEECCCCCEEEE-EcCCCeEEEEECC--CCCc----eeeeeeeecCCeeeEEEecCCcEEEEEeC-C
Q 016982          197 ILQLDLSFSWAFGVKWSPSGNTLAY-VGHNSMIYFVDDV--GPSP----LAQNVAFRDLPLRDVLFVSEKMVIGVGFD-C  268 (379)
Q Consensus       197 ~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~v~d~~--~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~d-~  268 (379)
                      .. +.......+.++|+|+++.|+. .+.++.|.+||+.  ++..    ....+......+..++++++|++.++... +
T Consensus       142 ~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          142 KK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             EE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred             EE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence            22 2222334688999999987654 4567899999873  3321    11122223345788999999998886654 4


Q ss_pred             CeEEEEec
Q 016982          269 NPMVFAAD  276 (379)
Q Consensus       269 ~~~i~~~~  276 (379)
                      .+..|+.+
T Consensus       221 ~v~~~d~~  228 (297)
T 3g4e_A          221 RVIRLDPV  228 (297)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEcCC
Confidence            56666654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.52  E-value=2e-12  Score=120.38  Aligned_cols=239  Identities=12%  Similarity=0.028  Sum_probs=147.8

Q ss_pred             cCcceeEEEeCCCCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC-------
Q 016982            9 FAQCITCHAWSPDHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR-------   76 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------   76 (379)
                      +...+..++|||||++||.+..     ...|+++|+.+++.... .+..  .....++|+ |++.|+.++.+.       
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence            4457889999999999986532     35799999999853222 2221  113578999 999998888774       


Q ss_pred             ------eEEEEeccCCceeeeEEee--c-CCCceeEEEECCCCCEEEEEeC----CCeEEEEEeecCCceeEEEEEeecC
Q 016982           77 ------NSYVWNQEGSEWVPTLVIL--R-LNRAALCVQWSPKENKFAVGSG----AKTVCICYYEQENNWWVSKLIRKRH  143 (379)
Q Consensus        77 ------~i~vw~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~~  143 (379)
                            .|++|++.++.........  . +......+.|+|||++|+....    +..|+++|+..+..  ....+ ..+
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~--~~~~l-~~~  279 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA--PLLTV-QGD  279 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC--CCEEE-ECS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC--ceEEE-eCC
Confidence                  3999999876532222212  2 2345678999999998866543    34788888876531  12333 345


Q ss_pred             CcCEEEEEEcCCCcEEEEee-CC---CeEEEEeccccccccccccCCCccCCcccc--eEEEeecCCcceEEEEECCCCC
Q 016982          144 DSSVTSVAWHPNNVFLATTS-TD---GKCRVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQLDLSFSWAFGVKWSPSGN  217 (379)
Q Consensus       144 ~~~v~~~~~~p~~~~l~~~~-~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~  217 (379)
                      ....... |++++..|+..+ .+   +.|..+|+.                  .+.  ....+..+...+.  .|+++++
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~------------------~~~~~~~~~l~~~~~~~~--~~s~~g~  338 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA------------------NPGPAHWRDLIPERQQVL--TVHSGSG  338 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT------------------SCCGGGCEEEECCCSSCE--EEEEETT
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC------------------CCCccccEEEecCCCCEE--EEEEECC
Confidence            5555554 566665555443 33   578888862                  221  1234444554454  8899999


Q ss_pred             EEEEEcCC-C--eEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEEE-EEeC----CCeEEEEecC
Q 016982          218 TLAYVGHN-S--MIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVIG-VGFD----CNPMVFAADE  277 (379)
Q Consensus       218 ~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~-~~~d----~~~~i~~~~~  277 (379)
                      .|+....+ +  .|++||+.+..  ...+.. ....+..+.+++++..++ ...+    ..+..|+...
T Consensus       339 ~lv~~~~~~g~~~l~~~d~~g~~--~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          339 YLFAEYMVDATARVEQFDYEGKR--VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             EEEEEEEETTEEEEEEECTTSCE--EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             EEEEEEEECCeeEEEEEECCCCe--eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            88776543 3  68899987543  233332 234566778888877555 3332    4555555443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.48  E-value=3.1e-11  Score=100.76  Aligned_cols=200  Identities=10%  Similarity=0.035  Sum_probs=124.9

Q ss_pred             EeccCCCceEEEEEcCCCC-EEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEe
Q 016982           49 VLQKHDQIVSGIDWSVRSN-RIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYY  127 (379)
Q Consensus        49 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~  127 (379)
                      .+.........+.|+|+++ ++++...++.|..|+.. ++. ..+  ......+..++++++|+++++...++.|..|+.
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~--~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVL--LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEE--EESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEE--eCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            3344455678899999998 55666678899999984 442 222  334567899999999997666656678988876


Q ss_pred             ecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE----eeC-------------CCeEEEEeccccccccccccCCCccC
Q 016982          128 EQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT----TST-------------DGKCRVFSTFIKGVDIKEKKEGTSSD  190 (379)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~----~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~  190 (379)
                      + +....+...........+.+++++|+|+++++    |..             .+.|..+|.                 
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~-----------------  176 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP-----------------  176 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS-----------------
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC-----------------
Confidence            5 33111111110011234678999999998886    332             244666653                 


Q ss_pred             CcccceEEEeecCCcceEEEEECCCCCEEEEEcCC------CeEEEEECCCCCcee--eee-eeecCCeeeEEEecCCcE
Q 016982          191 TKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN------SMIYFVDDVGPSPLA--QNV-AFRDLPLRDVLFVSEKMV  261 (379)
Q Consensus       191 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d------~~i~v~d~~~~~~~~--~~~-~~~~~~i~~~~~s~~~~~  261 (379)
                       .+++... +. .......++|+|+++.|+.+...      +.|.+|++.... +.  ..+ .........++++++|++
T Consensus       177 -~~g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~l  252 (305)
T 3dr2_A          177 -DGSPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWL  252 (305)
T ss_dssp             -SSCCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred             -CCCcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCE
Confidence             2232222 11 23346789999999988777654      789999986543 11  111 112334567899999997


Q ss_pred             EEEEeCCCeEEEEe
Q 016982          262 IGVGFDCNPMVFAA  275 (379)
Q Consensus       262 l~~~~d~~~~i~~~  275 (379)
                      .++. .+.+.+|+.
T Consensus       253 wv~~-~~gv~~~~~  265 (305)
T 3dr2_A          253 WSSS-GTGVCVFDS  265 (305)
T ss_dssp             EECC-SSEEEEECT
T ss_pred             EEec-CCcEEEECC
Confidence            7765 345666664

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=2.6e-11  Score=102.45  Aligned_cols=238  Identities=7%  Similarity=0.040  Sum_probs=148.9

Q ss_pred             EEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccC-------CCceEEEEEcCCCCEEEEEeC--C
Q 016982           15 CHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKH-------DQIVSGIDWSVRSNRIVTVSH--D   75 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d   75 (379)
                      .++++|||++++++.          .++.|.+||..+.  +.+..+.-.       ......++|+|||++++++..  +
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence            399999999887765          3578999999987  455544321       123457999999999888764  6


Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec-CCceeEEE-EEeecCCcCE-EEEEE
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ-ENNWWVSK-LIRKRHDSSV-TSVAW  152 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~-~~~~~~~~~v-~~~~~  152 (379)
                      +.|.++|+.+++.+..+...   +.  ...+....+.+++.+.||.+.+.++.. ++.. ... .....-..++ ....|
T Consensus       160 ~~VsVID~~t~~vv~tI~v~---g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~~~~~~~~~~~~~~~~~~  233 (386)
T 3sjl_D          160 PAVGVVDLEGKAFKRMLDVP---DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITHTEVFHPEDEFLINHPAY  233 (386)
T ss_dssp             CEEEEEETTTTEEEEEEECC---SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-EEECCCCSCTTSCBCSCCEE
T ss_pred             CeEEEEECCCCcEEEEEECC---Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEE-Eeecceecccccccccccee
Confidence            88999999999877776432   11  122322345666777788887777765 3310 000 0101111222 12356


Q ss_pred             c-CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee----------cCCcceEEEEECCCCCEEEE
Q 016982          153 H-PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD----------LSFSWAFGVKWSPSGNTLAY  221 (379)
Q Consensus       153 ~-p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~sp~~~~l~~  221 (379)
                      . ++|+++. .+.+|.+.+.|+.....                +.+..+.          ........++++|+++.++.
T Consensus       234 ~~~dG~~~~-vs~~g~V~v~d~~~~~~----------------~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV  296 (386)
T 3sjl_D          234 SQKAGRLVW-PTYTGKIHQIDLSSGDA----------------KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  296 (386)
T ss_dssp             ETTTTEEEE-EBTTSEEEEEECTTSSC----------------EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             EcCCCcEEE-EeCCCEEEEEECCCCcc----------------eeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence            4 5775544 56689999999731110                1111111          00122345777999988877


Q ss_pred             EcC----------CCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEE-E-eCCCeEEEEecCCC
Q 016982          222 VGH----------NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGV-G-FDCNPMVFAADETG  279 (379)
Q Consensus       222 ~~~----------d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~-~-~d~~~~i~~~~~~~  279 (379)
                      ...          .+.|.++|+.+.+. +..+.. ..++.++++++|++ +|.+ . .++.+.+++.....
T Consensus       297 ~~~~~~~~~hk~~~~~V~viD~~t~kv-~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          297 LVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EeccccccccCCCCCEEEEEECCCCeE-EEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            642          25799999999774 455553 34788999999997 5554 3 37789999877654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=5.8e-11  Score=110.51  Aligned_cols=184  Identities=12%  Similarity=0.089  Sum_probs=118.4

Q ss_pred             CCCceEEEEEcCCCCEEEEEe-----CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCe------
Q 016982           53 HDQIVSGIDWSVRSNRIVTVS-----HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKT------  121 (379)
Q Consensus        53 ~~~~v~~~~~~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------  121 (379)
                      |...+..++|||||++|+.+.     ....|++||+.+++..... ..  ......++|+ |++.|+.++.+..      
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LK--DVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EE--EEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cC--CceeccEEEe-CCCEEEEEEecCccccccc
Confidence            455788999999999887543     2246999999999854431 11  1124678999 9999999887743      


Q ss_pred             -------EEEEEeecCCceeEEEEEe--ec-CCcCEEEEEEcCCCcEEEEeeC----CCeEEEEeccccccccccccCCC
Q 016982          122 -------VCICYYEQENNWWVSKLIR--KR-HDSSVTSVAWHPNNVFLATTST----DGKCRVFSTFIKGVDIKEKKEGT  187 (379)
Q Consensus       122 -------v~i~~~~~~~~~~~~~~~~--~~-~~~~v~~~~~~p~~~~l~~~~~----d~~i~v~d~~~~~~~~~~~~~~~  187 (379)
                             |++|++.+....  ...+.  .. +...+..+.|+|||++|+....    ...+.++|+.             
T Consensus       203 ~~~~~~~v~~~~lgt~~~~--~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~-------------  267 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQED--DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS-------------  267 (693)
T ss_dssp             --CCCCEEEEEETTSCGGG--CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT-------------
T ss_pred             ccCCCcEEEEEECCCCccc--ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC-------------
Confidence                   888887765421  11221  22 3445788999999998865432    3588999862             


Q ss_pred             ccCCccc-ceEEEeecCCcceEEEEECCCCCEEEE-EcCC---CeEEEEECCCCCc-eeeeeeeecCCeeeEEEecCCcE
Q 016982          188 SSDTKFG-EQILQLDLSFSWAFGVKWSPSGNTLAY-VGHN---SMIYFVDDVGPSP-LAQNVAFRDLPLRDVLFVSEKMV  261 (379)
Q Consensus       188 ~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d---~~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~  261 (379)
                           .+ .....+..+....... ++++|..|+. +..+   +.|..+|+.++.. ..+.+..+...+.  .|+++++.
T Consensus       268 -----~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~  339 (693)
T 3iuj_A          268 -----QENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY  339 (693)
T ss_dssp             -----STTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred             -----CCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence                 22 1344454444444444 6666665554 4333   6899999887643 1234455555544  89999887


Q ss_pred             EE
Q 016982          262 IG  263 (379)
Q Consensus       262 l~  263 (379)
                      |+
T Consensus       340 lv  341 (693)
T 3iuj_A          340 LF  341 (693)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.44  E-value=2.1e-10  Score=97.70  Aligned_cols=241  Identities=7%  Similarity=-0.059  Sum_probs=147.8

Q ss_pred             EeC--CCCcEEEE-EecCCeEEEEEecCC--ceEEEEEec------c-CCCceEEEEEcCCCCEEEEEeCC------CeE
Q 016982           17 AWS--PDHAMVAF-CPNNNEVHIYKLIQE--KWEKLHVLQ------K-HDQIVSGIDWSVRSNRIVTVSHD------RNS   78 (379)
Q Consensus        17 ~~s--~~~~~l~~-~~~dg~i~i~~~~~~--~~~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------~~i   78 (379)
                      .++  +++++|++ +..++.|+++|+.+.  +.+...+++      . ....-..+..+|+| .++++..+      +.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            446  77887765 455789999998743  345555552      1 11244677889999 66666555      689


Q ss_pred             EEEeccCCceeeeEEeecCC-CceeEEEECCCCCEEEEEe-------------------CCCeEEEEEeecCCceeEEEE
Q 016982           79 YVWNQEGSEWVPTLVILRLN-RAALCVQWSPKENKFAVGS-------------------GAKTVCICYYEQENNWWVSKL  138 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-------------------~d~~v~i~~~~~~~~~~~~~~  138 (379)
                      .++|..+.+.+..+...... .-...+-|+|+++.+++..                   ....|.+||+.+++   ....
T Consensus       167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k---~~~t  243 (462)
T 2ece_A          167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK---RIHS  243 (462)
T ss_dssp             EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE---EEEE
T ss_pred             EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc---EeeE
Confidence            99999999877766432222 2345688899999888874                   36899999998765   4455


Q ss_pred             Eeec-CCcCEEEEEE--cCCCcEEEEee------CCCeEEEEeccccccccccccCCCccCCcccceEEEee-------c
Q 016982          139 IRKR-HDSSVTSVAW--HPNNVFLATTS------TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------L  202 (379)
Q Consensus       139 ~~~~-~~~~v~~~~~--~p~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  202 (379)
                      +..+ .......+.|  +|+++++.+++      .+++|.+|............     .+..+.+....+.       +
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v-----Idi~~~~v~~~lp~~~~~f~~  318 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV-----IEIPAEPLEGNLPEILKPFKA  318 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE-----EEECCEECCSSCCGGGGGGTE
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE-----EeCCCcccccccccccccccc
Confidence            5232 1123445555  99998877766      45678777642100000000     0000000000000       0


Q ss_pred             CCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCC--ceeeeeeeec--------------CCeeeEEEecCCcEEEEE
Q 016982          203 SFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPS--PLAQNVAFRD--------------LPLRDVLFVSEKMVIGVG  265 (379)
Q Consensus       203 ~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~--~~~~~~~~~~--------------~~i~~~~~s~~~~~l~~~  265 (379)
                      .......+.+||||++|.++. ..+.|.+||+....  .++..+...+              .....++++|||++|.++
T Consensus       319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa  398 (462)
T 2ece_A          319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT  398 (462)
T ss_dssp             ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred             CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence            013467899999999988765 46899999986432  2333333221              135889999999988755


Q ss_pred             e
Q 016982          266 F  266 (379)
Q Consensus       266 ~  266 (379)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.43  E-value=4.8e-11  Score=101.01  Aligned_cols=262  Identities=10%  Similarity=-0.077  Sum_probs=159.4

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEeccCCceeeeEEeecC-----
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------HDRNSYVWNQEGSEWVPTLVILRL-----   97 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~-----   97 (379)
                      .|.++|..+.  +.+.++.....+  .+.++||+++++++.          .++.|.+||+.+++.+..+...+.     
T Consensus        47 ~vsvID~~t~--~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~  122 (368)
T 1mda_H           47 ENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             eEEEEECCCC--eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccccc
Confidence            8889999887  677777655556  799999999888876          367899999999998777754211     


Q ss_pred             CCceeEEEECCCCCEEEEEeC--CCeEEE--EEeecCCceeEEEEEeecCCcCEEEEEEcCCC-cEEEEeeCCCeEEEEe
Q 016982           98 NRAALCVQWSPKENKFAVGSG--AKTVCI--CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN-VFLATTSTDGKCRVFS  172 (379)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~~~--d~~v~i--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~~i~v~d  172 (379)
                      ......+.++|||++++++..  +..+.+  +|..+      .+.+..+.  .   ..+.|++ +.+++.+.|+.+.+.|
T Consensus       123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t------v~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD------DQLTKSAS--C---FHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE------EEEEECSS--C---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred             CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh------ceEEECCC--c---eEEccCCCeEEEEEcCCCCEEEEE
Confidence            134678999999999999875  456888  77766      12221111  1   1233444 4455566788887777


Q ss_pred             ccccccccccccCCCccCCcccceEE----EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc-eeeeeee--
Q 016982          173 TFIKGVDIKEKKEGTSSDTKFGEQIL----QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP-LAQNVAF--  245 (379)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~--  245 (379)
                      +.....             ..++...    .+.....+.   . ++++..++..+. +.+.+.|...... .+..+..  
T Consensus       192 ~~~~~~-------------~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~  253 (368)
T 1mda_H          192 LAAAPA-------------AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNE  253 (368)
T ss_dssp             CCSSCC-------------CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSC
T ss_pred             Cccccc-------------cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecc
Confidence            621000             0011110    011112233   3 565666666666 9999999865431 1121110  


Q ss_pred             --------ecCCeeeEEEecCCcEEEEE-e-C--------CCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccccc
Q 016982          246 --------RDLPLRDVLFVSEKMVIGVG-F-D--------CNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAF  307 (379)
Q Consensus       246 --------~~~~i~~~~~s~~~~~l~~~-~-d--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (379)
                              .......++++|+++.+..+ . .        +.+.+++.........   +                    
T Consensus       254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~---i--------------------  310 (368)
T 1mda_H          254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP---I--------------------  310 (368)
T ss_dssp             THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC---C--------------------
T ss_pred             ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE---E--------------------
Confidence                    11122237899998766633 2 2        2455666554331111   0                    


Q ss_pred             ceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee-cCceEEEEeCCCccccccCC
Q 016982          308 GKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-LDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-~Dg~v~iW~~~~~~~~~~~~  378 (379)
                                            ..+.  ...+++ +++++   .+++++.. .++.|.++|+.+++.++.+.
T Consensus       311 ----------------------~vg~--~p~gi~-~s~Dg---~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          311 ----------------------SNGH--DSDAII-AAQDG---ASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             ----------------------EEEE--EECEEE-ECCSS---SCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             ----------------------ECCC--CcceEE-ECCCC---CEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence                                  0121  467788 77766   13677777 69999999999999887764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.41  E-value=4e-11  Score=103.21  Aligned_cols=248  Identities=7%  Similarity=0.021  Sum_probs=150.3

Q ss_pred             EEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccC-------CCceEEEEEcCCCCEEEEEeC--C
Q 016982           15 CHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKH-------DQIVSGIDWSVRSNRIVTVSH--D   75 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d   75 (379)
                      .++++|||++|+++.          .++.|.++|..+.  +.+..+.-.       ......++|+|||++++++..  +
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~--~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~  199 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF--LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA  199 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC--cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC
Confidence            899999999888775          3678999999887  444444311       123457899999999988764  5


Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEE-EEEeecCCcC-EEEEEE
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVS-KLIRKRHDSS-VTSVAW  152 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~~~-v~~~~~  152 (379)
                      +.|.+.|+.+++.+..+...   +.   ....|++ ..+++.+.||.+.+.+...++..... ..+ .....+ ...+.+
T Consensus       200 ~~VsVID~~t~kvv~~I~v~---g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~-~v~~~p~~~~~~~  272 (426)
T 3c75_H          200 PAVGVVDLEGKTFDRMLDVP---DC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVF-HTEDELLINHPAF  272 (426)
T ss_dssp             CEEEEEETTTTEEEEEEECC---SE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCC-SCTTSCBCSCCEE
T ss_pred             CeEEEEECCCCeEEEEEEcC---Cc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeee-ccCCCceeeEeee
Confidence            78999999999877766431   11   2233332 44555566777766666333311000 011 111111 123567


Q ss_pred             cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC--------
Q 016982          153 HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH--------  224 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--------  224 (379)
                      .+++..++..+..+.+.+.|...............   .........   .......++++|+++++++...        
T Consensus       273 ~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~---~~~~i~~g~---~p~g~~~va~s~dg~rlyVa~~~~~~gthk  346 (426)
T 3c75_H          273 SLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL---TEAERADDW---RPGGWQQTAYHRQSDRIYLLVDQRDEWKHK  346 (426)
T ss_dssp             CTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS---CTTTGGGTE---EECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred             cCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec---ccccccccc---ccCCceeeEEcCCCCEEEEEeccccccccc
Confidence            88888777777889999998631111000000000   000000000   0111223689999887776532        


Q ss_pred             --CCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EEEEEe--CCCeEEEEecCCC
Q 016982          225 --NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VIGVGF--DCNPMVFAADETG  279 (379)
Q Consensus       225 --d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~--d~~~~i~~~~~~~  279 (379)
                        .+.|.++|..+.+. +..+.. .....++.|+|||+ ++++..  ++.+.+++.....
T Consensus       347 ~~s~~VsVID~~T~kv-v~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          347 AASRFVVVLNAETGER-INKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             SCEEEEEEEETTTCCE-EEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCEEEEEECCCCeE-EEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence              35799999998774 466653 23578999999998 666443  7899999977654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=1.1e-09  Score=92.15  Aligned_cols=188  Identities=6%  Similarity=-0.020  Sum_probs=124.5

Q ss_pred             cCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc--CCCceEEEEEcCCCCEEEEEeC------CCeEEE
Q 016982            9 FAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK--HDQIVSGIDWSVRSNRIVTVSH------DRNSYV   80 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------d~~i~v   80 (379)
                      +...+.+++|+|+|+++++. . ..|.+||..+++...+.....  ....+..++++|+|+++++...      .+.|..
T Consensus        88 ~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~  165 (326)
T 2ghs_A           88 LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH  165 (326)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred             CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence            45679999999999877754 4 459999988775444332221  1246889999999987665432      244555


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEE-eCCCeEEEEEee--cC-CceeEEEEEe--ecCCcCEEEEEEcC
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVG-SGAKTVCICYYE--QE-NNWWVSKLIR--KRHDSSVTSVAWHP  154 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~~~~--~~-~~~~~~~~~~--~~~~~~v~~~~~~p  154 (379)
                      ++  +++....   .........++|+|+++.++.+ +.++.|.+|+++  ++ ... ..+.+.  .........+++++
T Consensus       166 ~~--~g~~~~~---~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          166 VA--KGKVTKL---FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-KAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             EE--TTEEEEE---EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-CCEEEEECTTSSSEEEEEEECT
T ss_pred             Ee--CCcEEEe---eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-CceEEEECCCCCCCCCeeEECC
Confidence            55  4543222   1223456789999999877655 446889999986  33 210 011121  22345567899999


Q ss_pred             CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC-CCCCEEEEEc
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS-PSGNTLAYVG  223 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~  223 (379)
                      +|++.++...++.|.+||.                   .++.+..+..+...+.+++|+ |+++.|++++
T Consensus       240 ~G~lwva~~~~~~v~~~d~-------------------~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          240 EGHIWNARWGEGAVDRYDT-------------------DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             TSCEEEEEETTTEEEEECT-------------------TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEECC-------------------CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence            9988777766788999984                   355566666666679999998 8887765544

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.33  E-value=4.1e-10  Score=104.22  Aligned_cols=195  Identities=12%  Similarity=0.097  Sum_probs=117.1

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc----------e-EEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI----------V-SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      +..+++++.++.|+-+|..++  +.+..+......          + ..+.+  .+..+++++.|+.|..+|..+++.+-
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W  145 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDG--RLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAW  145 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCC--ceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEee
Confidence            456777778889999999988  455554432210          0 11222  35688888999999999999998665


Q ss_pred             eEEeecCCCceeEEEECC---CCCEEEEEe------CCCeEEEEEeecCCceeEEEEEee--------------------
Q 016982           91 TLVILRLNRAALCVQWSP---KENKFAVGS------GAKTVCICYYEQENNWWVSKLIRK--------------------  141 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~---~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~~--------------------  141 (379)
                      ......+......+..+|   ++ .+++++      .++.|+.||..+++..+.......                    
T Consensus       146 ~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  224 (689)
T 1yiq_A          146 SVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG  224 (689)
T ss_dssp             EEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred             eecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence            554320111111222222   34 444443      268899999988874332221100                    


Q ss_pred             -------cCCcCEEEEEEcCCCcEEEEeeCCCe-------------------EEEEeccccccccccccCCCccCCcccc
Q 016982          142 -------RHDSSVTSVAWHPNNVFLATTSTDGK-------------------CRVFSTFIKGVDIKEKKEGTSSDTKFGE  195 (379)
Q Consensus       142 -------~~~~~v~~~~~~p~~~~l~~~~~d~~-------------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
                             ........++++|+..+++.++.++.                   |..+|.                  .+++
T Consensus       225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~------------------~TG~  286 (689)
T 1yiq_A          225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA------------------DTGE  286 (689)
T ss_dssp             STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET------------------TTCC
T ss_pred             ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc------------------cCCc
Confidence                   00011125788888888888887764                   788886                  5676


Q ss_pred             eEEEeec--CC-------cceEEEEECCCCC---EEEEEcCCCeEEEEECCCCCce
Q 016982          196 QILQLDL--SF-------SWAFGVKWSPSGN---TLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       196 ~~~~~~~--~~-------~~v~~~~~sp~~~---~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      .+-.++.  |.       ..+.-.....+|+   .++.++.+|.++++|..+++.+
T Consensus       287 ~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          287 YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL  342 (689)
T ss_dssp             EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence            6655543  21       1111122222554   7888899999999999888743

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.27  E-value=2.7e-09  Score=98.60  Aligned_cols=194  Identities=8%  Similarity=0.047  Sum_probs=116.6

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc-----------eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI-----------VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      +..|++++.++.|+-+|..++  +.+..+......           ...+++  ++..|+.++.|+.|..+|..+++.+-
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTG--NRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTT--EEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCC--cEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence            345666777889999999988  555555432210           112333  35688888999999999999998665


Q ss_pred             eEEee-cCC--CceeE-EEECCCCCEEEEEeC------CCeEEEEEeecCCceeEEEEEeec------------------
Q 016982           91 TLVIL-RLN--RAALC-VQWSPKENKFAVGSG------AKTVCICYYEQENNWWVSKLIRKR------------------  142 (379)
Q Consensus        91 ~~~~~-~~~--~~v~~-~~~~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~~~------------------  142 (379)
                      .+... ...  ..+.. ...  .+..+++++.      ++.|+.+|..+++..+........                  
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~  230 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD  230 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             eecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence            55432 100  11111 111  2345555553      689999999888743222211000                  


Q ss_pred             ----------CCcCEEEEEEcCCCcEEEEeeCCC-------------------eEEEEeccccccccccccCCCccCCcc
Q 016982          143 ----------HDSSVTSVAWHPNNVFLATTSTDG-------------------KCRVFSTFIKGVDIKEKKEGTSSDTKF  193 (379)
Q Consensus       143 ----------~~~~v~~~~~~p~~~~l~~~~~d~-------------------~i~v~d~~~~~~~~~~~~~~~~~~~~~  193 (379)
                                .......++++|++..++.++.++                   .|..+|.                  .+
T Consensus       231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~------------------~T  292 (677)
T 1kb0_A          231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP------------------DT  292 (677)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT------------------TT
T ss_pred             ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC------------------CC
Confidence                      001113578888888888877664                   3777775                  56


Q ss_pred             cceEEEeec--CC-------cceEEEEECCCC---CEEEEEcCCCeEEEEECCCCCce
Q 016982          194 GEQILQLDL--SF-------SWAFGVKWSPSG---NTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       194 ~~~~~~~~~--~~-------~~v~~~~~sp~~---~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      ++.+-.++.  |.       ....-+....+|   ..|+.++.+|.++++|..+++.+
T Consensus       293 G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          293 GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe
Confidence            666655443  21       112222333467   67888999999999999888753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.26  E-value=5.9e-09  Score=88.90  Aligned_cols=193  Identities=15%  Similarity=0.156  Sum_probs=128.6

Q ss_pred             ceeEEEeCCCCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCC---ceEEEEEcCCCCEEEEEe---------
Q 016982           12 CITCHAWSPDHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQ---IVSGIDWSVRSNRIVTVS---------   73 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~---------   73 (379)
                      ....+..+|+| +++++..+      |.|.++|..+.  +.+..+.....   --..+.|+|+++.+++..         
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~--~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~  215 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF--EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIED  215 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC--CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTT
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC--eEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccc
Confidence            34556788999 66665444      78999999886  56666653222   234588899999888874         


Q ss_pred             ----------CCCeEEEEeccCCceeeeEEeecCCCceeEEEE--CCCCCEEEEEeC------CCeEEEEEeecCCceeE
Q 016982           74 ----------HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQW--SPKENKFAVGSG------AKTVCICYYEQENNWWV  135 (379)
Q Consensus        74 ----------~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~  135 (379)
                                .+.+|.+||+.+++....+...........+.|  +|+++++++++.      +++|.+|..+.+ .+..
T Consensus       216 g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g-~~~~  294 (462)
T 2ece_A          216 GLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG-KWNA  294 (462)
T ss_dssp             CCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT-EEEE
T ss_pred             ccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC-ceeE
Confidence                      367899999999877666654222234556656  999998888774      568888877653 2333


Q ss_pred             EEEEeecC-----------------CcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccceE
Q 016982          136 SKLIRKRH-----------------DSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI  197 (379)
Q Consensus       136 ~~~~~~~~-----------------~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
                      .+.+....                 ......+.++||+++|.++.. .+.|.+||+..               ....+.+
T Consensus       295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d---------------~~~~~lv  359 (462)
T 2ece_A          295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN---------------PFKPVLT  359 (462)
T ss_dssp             EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS---------------TTSCEEE
T ss_pred             EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC---------------CCCcEEE
Confidence            33221000                 234678999999998887775 68999999720               0112333


Q ss_pred             EEeecC--------------CcceEEEEECCCCCEEEEEc
Q 016982          198 LQLDLS--------------FSWAFGVKWSPSGNTLAYVG  223 (379)
Q Consensus       198 ~~~~~~--------------~~~v~~~~~sp~~~~l~~~~  223 (379)
                      ..+...              .+....++++|||++|+++.
T Consensus       360 ~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          360 GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            333221              01357899999999999886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.25  E-value=6.5e-08  Score=83.15  Aligned_cols=221  Identities=11%  Similarity=0.046  Sum_probs=128.6

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccC---------CCceE-EEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH---------DQIVS-GIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---------~~~v~-~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      .+..+++++.++.|..+|..+++  .+......         ...+. .+..  ++..++.++.++.|..+|..+++..-
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGK--EIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCC--EEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCc--eeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEE
Confidence            35667778888999999998874  33333221         12222 2222  35678888889999999999998654


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCE------EEEEEcCCCcEEEEeeC
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSV------TSVAWHPNNVFLATTST  164 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v------~~~~~~p~~~~l~~~~~  164 (379)
                      .....  ..........  +..+++++.++.+..+|..+++..+...    . ...+      ......  +..++.++.
T Consensus       128 ~~~~~--~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~----~-~~~~~~~~~~~~~~~~--~~~v~~g~~  196 (376)
T 3q7m_A          128 QTKVA--GEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVN----L-DMPSLSLRGESAPTTA--FGAAVVGGD  196 (376)
T ss_dssp             EEECS--SCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE----C-CC-----CCCCCCEEE--TTEEEECCT
T ss_pred             EEeCC--CceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEe----C-CCCceeecCCCCcEEE--CCEEEEEcC
Confidence            44322  1111112222  4578888889999999988776322111    1 1111      111221  346777888


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc-------ceEEEEECC--CCCEEEEEcCCCeEEEEECCC
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS-------WAFGVKWSP--SGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~sp--~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      ++.+..+|.                  .+++.+-.......       .+..+.-.|  .+..++.++.++.+..+|..+
T Consensus       197 ~g~l~~~d~------------------~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t  258 (376)
T 3q7m_A          197 NGRVSAVLM------------------EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS  258 (376)
T ss_dssp             TTEEEEEET------------------TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred             CCEEEEEEC------------------CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence            999999996                  44555444332110       000011122  256677788899999999988


Q ss_pred             CCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982          236 PSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       236 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      ++.. ....  ......+.. .++.+++++.++.+..++....
T Consensus       259 G~~~-w~~~--~~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          259 GQIM-WKRE--LGSVNDFIV-DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             CCEE-EEEC--CCCEEEEEE-ETTEEEEEETTCCEEEEETTTC
T ss_pred             CcEE-eecc--CCCCCCceE-ECCEEEEEcCCCeEEEEECCCC
Confidence            7643 3222  122333333 2556666777888888886544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.24  E-value=1.9e-10  Score=97.01  Aligned_cols=225  Identities=9%  Similarity=0.019  Sum_probs=137.7

Q ss_pred             EEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEee
Q 016982           16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVIL   95 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~   95 (379)
                      +....++ .|.+++.++.|..|| .++  +...........+.++...+++. |..++.+  |..+|. +++....... 
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g--~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~-   95 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDG--SVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT-   95 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTS--CEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCC--cEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC-
Confidence            3444455 466677788899999 666  34444444444567777777774 4444444  888886 4442222211 


Q ss_pred             cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccc
Q 016982           96 RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFI  175 (379)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~  175 (379)
                       .........+.  +..+.+++.++.+..+|.. +..   .-.. ......+.++...+++. +..++.++.+..+|.  
T Consensus        96 -~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~---~~~~-~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~--  164 (330)
T 3hxj_A           96 -KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE---KWRF-KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINP--  164 (330)
T ss_dssp             ------CCEEEE--TTEEEEECTTSEEEEECTT-SCE---EEEE-ECSSCCCSCCEECTTSC-EEEECTTSEEEEECT--
T ss_pred             -CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE---EEEE-cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECC--
Confidence             11112222333  5567788888989988876 442   2222 23334455666766776 555777889999985  


Q ss_pred             cccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEE
Q 016982          176 KGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLF  255 (379)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~  255 (379)
                                      . ++.+..+......+.++...+++.+++ ++  +.|..+| .++... .........+.++..
T Consensus       165 ----------------~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~-~~~~~~~~~~~~~~~  222 (330)
T 3hxj_A          165 ----------------D-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEK-WNFYAGYWTVTRPAI  222 (330)
T ss_dssp             ----------------T-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEE-EEECCSSCCCSCCEE
T ss_pred             ----------------C-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEE-EEEccCCcceeceEE
Confidence                            3 555555554455567778888887554 44  7899999 555433 344434466888999


Q ss_pred             ecCCcEEEEEeCCCeEEEEecCCCcEE
Q 016982          256 VSEKMVIGVGFDCNPMVFAADETGIWT  282 (379)
Q Consensus       256 s~~~~~l~~~~d~~~~i~~~~~~~~~~  282 (379)
                      .++|.+.+++.++.+..++.+....|.
T Consensus       223 ~~~g~l~v~t~~~gl~~~~~~g~~~~~  249 (330)
T 3hxj_A          223 SEDGTIYVTSLDGHLYAINPDGTEKWR  249 (330)
T ss_dssp             CTTSCEEEEETTTEEEEECTTSCEEEE
T ss_pred             CCCCeEEEEcCCCeEEEECCCCCEeEE
Confidence            999998888888888888543333444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.24  E-value=5.6e-10  Score=94.53  Aligned_cols=215  Identities=7%  Similarity=-0.061  Sum_probs=128.9

Q ss_pred             EEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccC-------CCceEEEEEcCCCCEEEEEeC--C
Q 016982           15 CHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKH-------DQIVSGIDWSVRSNRIVTVSH--D   75 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d   75 (379)
                      .+.++||+++++++.          .++.|.+||+.+.  +.+.++...       ......++++|||++++++..  +
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence            799999999988875          3678999999997  556665432       123468999999999988864  4


Q ss_pred             CeEEE--EeccCCceeeeEEeecC-----CCceeEEEE-------------------------------------CCCCC
Q 016982           76 RNSYV--WNQEGSEWVPTLVILRL-----NRAALCVQW-------------------------------------SPKEN  111 (379)
Q Consensus        76 ~~i~v--w~~~~~~~~~~~~~~~~-----~~~v~~~~~-------------------------------------~~~~~  111 (379)
                      ..+.+  +|..+   ...+...+.     .+.-.-+.+                                     .+++.
T Consensus       147 ~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~  223 (368)
T 1mda_H          147 AAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG  223 (368)
T ss_dssp             CEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             CeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCC
Confidence            56888  88865   122211000     000000111                                     22233


Q ss_pred             EEEEEeCCCeEEEEEeecCCceeEEEEEee------cC---CcCEEEEEEcCCCcEEEEeeC---------CCeEEEEec
Q 016982          112 KFAVGSGAKTVCICYYEQENNWWVSKLIRK------RH---DSSVTSVAWHPNNVFLATTST---------DGKCRVFST  173 (379)
Q Consensus       112 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~------~~---~~~v~~~~~~p~~~~l~~~~~---------d~~i~v~d~  173 (379)
                      .++..+. +.+.+.|....... ....+..      .+   ......++++|+++++.++..         ++.+.++|+
T Consensus       224 ~~~~vs~-~~V~viD~~~~~~~-v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~  301 (368)
T 1mda_H          224 MLVWAVA-SSILQGDIPAAGAT-MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             EEEECBS-SCCEEEECCSSCCE-EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             EEEEEcC-CEEEEEECCCCcce-EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence            3333333 55666565432210 1111100      00   011112679999987776533         235669997


Q ss_pred             cccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCE-EEEEc-CCCeEEEEECCCCCceeeeeeeecCCee
Q 016982          174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT-LAYVG-HNSMIYFVDDVGPSPLAQNVAFRDLPLR  251 (379)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~i~  251 (379)
                                        .+.+.+..+.... ....++|+|||++ +++.. .++.|.++|+.+.+ .+..+... ....
T Consensus       302 ------------------~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k-vv~~I~vg-~~P~  360 (368)
T 1mda_H          302 ------------------SVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ-DQSSVELD-KGPE  360 (368)
T ss_dssp             ------------------SSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE-EEEECCCC-SCCC
T ss_pred             ------------------CCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc-EEEEEECC-CCCC
Confidence                              6677777776533 5789999999984 55555 58999999999876 44666543 3345


Q ss_pred             eEEEec
Q 016982          252 DVLFVS  257 (379)
Q Consensus       252 ~~~~s~  257 (379)
                      .+++.+
T Consensus       361 ~i~~~~  366 (368)
T 1mda_H          361 SLSVQN  366 (368)
T ss_dssp             EEECCC
T ss_pred             EEEeec
Confidence            666544

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.24  E-value=4.6e-12  Score=108.55  Aligned_cols=204  Identities=10%  Similarity=0.036  Sum_probs=107.6

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCc
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRA  100 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~  100 (379)
                      ++..+++++.||.|+.||..++  +.+..+..  ..+.+..+..++..+++++.|+.|+.||..+++........ ....
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG--~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-~~~~   82 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG--SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-IPEL   82 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC--CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-HHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCC--CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-Cccc
Confidence            5778999999999999999988  45555554  44555555667777888789999999999888643332111 0111


Q ss_pred             ee-EEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccc
Q 016982          101 AL-CVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVD  179 (379)
Q Consensus       101 v~-~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~  179 (379)
                      +. ...+. .+..+++++.++.++.||..+++.   .-.+ ..+.    ...++|++..+++++.++.|+.||.      
T Consensus        83 ~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~---~w~~-~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~------  147 (369)
T 2hz6_A           83 VQASPCRS-SDGILYMGKKQDIWYVIDLLTGEK---QQTL-SSAF----ADSLSPSTSLLYLGRTEYTITMYDT------  147 (369)
T ss_dssp             HTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCS------
T ss_pred             cccCceEe-cCCEEEEEeCCCEEEEEECCCCcE---EEEe-cCCC----cccccccCCEEEEEecCCEEEEEEC------
Confidence            11 11111 345677888899999999988873   2222 1121    2345678888999999999999996      


Q ss_pred             cccccCCCccCCcccceEEEeecCCcceEEEEECCCC---CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeee-EEE
Q 016982          180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG---NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRD-VLF  255 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~-~~~  255 (379)
                                  .+++.+-.+....  ....+++++.   ..+++++.+|.++.||..+++.+ .... ...++.. ..+
T Consensus       148 ------------~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~-~~~pv~~~~~~  211 (369)
T 2hz6_A          148 ------------KTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL-WIQN-YASPVVAFYVW  211 (369)
T ss_dssp             ------------SSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE-EEEE-CSSCEEEEEEC
T ss_pred             ------------CCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEE-EEec-CCCceEEEEEe
Confidence                        4444433332111  1223344432   45677888999999999887643 4333 2344433 344


Q ss_pred             ecCCc
Q 016982          256 VSEKM  260 (379)
Q Consensus       256 s~~~~  260 (379)
                      +++|.
T Consensus       212 ~~dg~  216 (369)
T 2hz6_A          212 QREGL  216 (369)
T ss_dssp             TTSSC
T ss_pred             cCCce
Confidence            45554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=3e-09  Score=90.21  Aligned_cols=198  Identities=6%  Similarity=-0.009  Sum_probs=128.0

Q ss_pred             cCcceeEEEeCCCCcEEEEEec-----CCeEEEEEecCCceEEEEEecc------CCCceEEEEEcCCCCEE-EEEe---
Q 016982            9 FAQCITCHAWSPDHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQK------HDQIVSGIDWSVRSNRI-VTVS---   73 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~---   73 (379)
                      +-..+.+++++++|+++++-..     ++.|.+||+.++  +.+..+..      +...+..++++|++..+ ++-.   
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg--~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN--QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT--EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC--eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence            4568999999999987776543     579999999887  33443332      22356889999875555 4444   


Q ss_pred             CCCeEEEEeccCCceeeeEEeecC-----------------------------CCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           74 HDRNSYVWNQEGSEWVPTLVILRL-----------------------------NRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      .++.|.+||+.+++....+  ..|                             ...+..++|+|+++.|+++..++. ++
T Consensus       143 ~~~~i~v~d~~~g~~~r~~--~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l  219 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVL--QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SM  219 (343)
T ss_dssp             GGCEEEEEETTTCCEEEEC--TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EE
T ss_pred             CCCeEEEEECCCCCEEEEe--cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eE
Confidence            5788999999877643322  110                             123578999999998888877653 44


Q ss_pred             EEeecCC--c-----eeE---EEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCccc
Q 016982          125 CYYEQEN--N-----WWV---SKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFG  194 (379)
Q Consensus       125 ~~~~~~~--~-----~~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~  194 (379)
                      |.+....  .     ...   ...  .++......++++++|+++++...++.|.+||.                  ..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~--~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~------------------~~G  279 (343)
T 2qe8_A          220 YRIKSADLSNLQLTDAELGSKIER--YSEKPICDGISIDKDHNIYVGDLAHSAIGVITS------------------ADR  279 (343)
T ss_dssp             EEEEHHHHTCTTCCHHHHHTTCEE--EEECCSCSCEEECTTCCEEEEEGGGTEEEEEET------------------TTT
T ss_pred             EEEEHHHhcCCCCChhhhhcceEe--cccCCCCceEEECCCCCEEEEccCCCeEEEEEC------------------CCC
Confidence            5444210  0     000   011  123335567899999999999888999999984                  133


Q ss_pred             ceEEEeec-CCcceEEEEECCCCCEEEEEcCCCeEEEE
Q 016982          195 EQILQLDL-SFSWAFGVKWSPSGNTLAYVGHNSMIYFV  231 (379)
Q Consensus       195 ~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d~~i~v~  231 (379)
                      +....... ....+.+++|.+++.++++.+..+.+.+|
T Consensus       280 ~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          280 AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             EEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             CEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            32222221 23457899999999888887655544333

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.20  E-value=1.6e-09  Score=91.37  Aligned_cols=222  Identities=10%  Similarity=0.022  Sum_probs=132.4

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      .+.++...++|. |..++.+  |..+|....   ....+...........+.  +..|..++.++.|..+|.. ++....
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~---~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~  131 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK--VYAINPDGT---EKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR  131 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE--EEEECCCGG---GGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred             cccceEEecCCc-EEEecCc--EEEECCCCc---EEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence            345666666665 4444443  777775322   111111111122223333  4567778888999999988 654333


Q ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEE
Q 016982           92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF  171 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~  171 (379)
                      .  ......+.++...+++. +.+++.++.+..+|.. +.   ..... ......+.++...+++.+++..   +.+..+
T Consensus       132 ~--~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~---~~~~~-~~~~~~~~~~~~d~~g~l~v~t---~~l~~~  200 (330)
T 3hxj_A          132 F--KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT---EKWRF-KTNDAITSAASIGKDGTIYFGS---DKVYAI  200 (330)
T ss_dssp             E--ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC---EEEEE-ECSSCCCSCCEECTTCCEEEES---SSEEEE
T ss_pred             E--cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC---EeEEE-ecCCCceeeeEEcCCCEEEEEe---CEEEEE
Confidence            3  23344566777777776 6667778899998877 44   22222 2334456667777777755544   778888


Q ss_pred             eccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCee
Q 016982          172 STFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLR  251 (379)
Q Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~  251 (379)
                      |                   ..++.+..+......+.++...++|.+.+ ++.++.+..+|. ++.. ..........+.
T Consensus       201 d-------------------~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~-~~~~~~~~~~~~  258 (330)
T 3hxj_A          201 N-------------------PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTE-KWRFKTGKRIES  258 (330)
T ss_dssp             C-------------------TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT-TSCE-EEEEECSSCCCS
T ss_pred             C-------------------CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC-CCCE-eEEeeCCCCccc
Confidence            7                   23444444444445677888888886554 556788888874 3332 344443334455


Q ss_pred             eEEEecCCcEEEEEeCCCeEEEEe
Q 016982          252 DVLFVSEKMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       252 ~~~~s~~~~~l~~~~d~~~~i~~~  275 (379)
                      .+...+++.+.+++.++.+..++.
T Consensus       259 ~~~~~~~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          259 SPVIGNTDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             CCEECTTSCEEEECTTCEEEEECT
T ss_pred             cceEcCCCeEEEecCCCCEEEECC
Confidence            677777888888888878887764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.20  E-value=3.2e-09  Score=93.70  Aligned_cols=250  Identities=8%  Similarity=-0.033  Sum_probs=154.9

Q ss_pred             CCCcEEEEEec-CCeEEEEEecCCceEEEE--EeccCCCceEEEEE-c-CCCCEEEEEe------------------CCC
Q 016982           20 PDHAMVAFCPN-NNEVHIYKLIQEKWEKLH--VLQKHDQIVSGIDW-S-VRSNRIVTVS------------------HDR   76 (379)
Q Consensus        20 ~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~--~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~d~   76 (379)
                      +||+++.+... ++.|.+.|+.+.  +...  .+.. ......+++ + |+++++++++                  .++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~  175 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVM--KCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  175 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTT--EEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCc--eEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence            37888776654 567999999987  4444  4432 235778887 5 9999998884                  235


Q ss_pred             eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC------------------------------------
Q 016982           77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK------------------------------------  120 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------------------------  120 (379)
                      .+.+.|..+.+....+...   +....++++|+|+++++.+.+.                                    
T Consensus       176 ~vtvID~~t~~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          176 VFTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             eEEEEECCCCeEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            7999999998866666542   2457788999999999988543                                    


Q ss_pred             --eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccceE
Q 016982          121 --TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI  197 (379)
Q Consensus       121 --~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
                        .|.+.|..+.+.......+..  .....++.++|||+++++++ .+.+|.++|+.....-. ....     ......+
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~-~~~l-----~~~~~v~  324 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF-YENA-----DPRSAVV  324 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH-HSCC-----CGGGGEE
T ss_pred             ECcEEEEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc-cccc-----CcccceE
Confidence              245555544110000122211  12446799999998777655 57899999984211000 0000     0112233


Q ss_pred             EEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------CceeeeeeeecCC-----eeeEEEecCCcEEE
Q 016982          198 LQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP---------SPLAQNVAFRDLP-----LRDVLFVSEKMVIG  263 (379)
Q Consensus       198 ~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~---------~~~~~~~~~~~~~-----i~~~~~s~~~~~l~  263 (379)
                      ..... ......++|+|+|...++.-.|++|.+||+...         .+.+..+..|-.+     -..+.++|||++|.
T Consensus       325 ~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          325 AEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             ECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             EEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            34433 345789999999944455668999999998661         2345555544322     23456789999998


Q ss_pred             EEeCC---Ce-----------EEEEecCCCcEEEEE
Q 016982          264 VGFDC---NP-----------MVFAADETGIWTFIK  285 (379)
Q Consensus       264 ~~~d~---~~-----------~i~~~~~~~~~~~~~  285 (379)
                      ++...   .+           .+++..+.. .+++.
T Consensus       404 ~~Nk~skdr~~~~gp~~~~~~ql~dis~~~-m~lv~  438 (595)
T 1fwx_A          404 CLSKFSKDRFLNVGPLKPENDQLIDISGDK-MVLVH  438 (595)
T ss_dssp             EEESCCTTSSCCCCSSCCEEEEEEECSSSS-CEEEE
T ss_pred             EcCCCCccccccCCCCCCCcceEEEcCCCc-EEEEE
Confidence            65432   33           778885433 44443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.16  E-value=1.8e-07  Score=76.25  Aligned_cols=221  Identities=9%  Similarity=-0.003  Sum_probs=134.4

Q ss_pred             cceeEEEeCCCCcEEEEE-ecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCce
Q 016982           11 QCITCHAWSPDHAMVAFC-PNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEW   88 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~   88 (379)
                      ..+.+++|+++++.|..+ ..++.|..++..+...  ...+.........++++|++..|+.+. ..+.|.++++.....
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            356789999976555544 4578999999887532  222222224668999999766665554 567899999875432


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeC---CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE-EEeeC
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSG---AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL-ATTST  164 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~  164 (379)
                       ..+. .........++++|++..|..+..   .+.|..++++...    .+.+..........++++|++..| ++-..
T Consensus       114 -~~~~-~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~----~~~~~~~~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          114 -RVLF-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN----RRILAQDNLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             -EEEE-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC----CEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             -EEEE-ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC----cEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence             2221 122246789999997666655554   3678777765433    222212333467899999987555 44455


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA  244 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  244 (379)
                      .+.|.++|+.                  .......+.. ......++.. ++.++++....+.|..+|..+++. +..+.
T Consensus       188 ~~~I~~~~~~------------------g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~-~~~i~  246 (267)
T 1npe_A          188 THRAECLNPA------------------QPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKE-MDTFH  246 (267)
T ss_dssp             TTEEEEEETT------------------EEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEE-EEEEC
T ss_pred             CCEEEEEecC------------------CCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCc-eEEEc
Confidence            6889999862                  1111111222 2234566654 344444444668999999887653 35554


Q ss_pred             eec-CCeeeEEEecCCc
Q 016982          245 FRD-LPLRDVLFVSEKM  260 (379)
Q Consensus       245 ~~~-~~i~~~~~s~~~~  260 (379)
                      ... .....+++.|++.
T Consensus       247 ~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          247 PHKQTRLYGITIALSQC  263 (267)
T ss_dssp             CSSCCCCCCEEEECSCC
T ss_pred             cccccccceeeecCccC
Confidence            322 2467888888764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.14  E-value=7.4e-08  Score=77.15  Aligned_cols=192  Identities=9%  Similarity=-0.028  Sum_probs=122.9

Q ss_pred             EEEEEeccCCC--ceEEEEEcCCCCEEEEEeC--CCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CC
Q 016982           45 EKLHVLQKHDQ--IVSGIDWSVRSNRIVTVSH--DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GA  119 (379)
Q Consensus        45 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  119 (379)
                      +.+.++. |..  ....++|+|++.+.++.+.  ++.|.+.|+.+++....+.+..+ .....+++.  ++.|..+. .+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecC
Confidence            4555664 443  3579999998744444443  57899999999997776654222 222344554  55555554 47


Q ss_pred             CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE
Q 016982          120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ  199 (379)
Q Consensus       120 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (379)
                      +.+.++|..+.+   ....+..+ ...  ...+++|++.++++..++.|.++|.                  .+.+.+..
T Consensus        86 ~~v~viD~~t~~---v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~------------------~t~~v~~~  141 (266)
T 2iwa_A           86 NIGFIYDRRTLS---NIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDP------------------HTFKLIKK  141 (266)
T ss_dssp             SEEEEEETTTTE---EEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECT------------------TTCCEEEE
T ss_pred             CEEEEEECCCCc---EEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEEC------------------CCCcEEEE
Confidence            899999988776   44555233 111  2335567776666667889999996                  55555655


Q ss_pred             eecCC-----cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec-------------CCeeeEEEecCCcE
Q 016982          200 LDLSF-----SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD-------------LPLRDVLFVSEKMV  261 (379)
Q Consensus       200 ~~~~~-----~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~  261 (379)
                      +....     ..++.+.|. +|...+....++.|.+.|..+++. +..+....             ...+.++|+|+++.
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~  219 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR  219 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCE
Confidence            54221     136678888 776555555688999999998773 45554321             24589999999876


Q ss_pred             EEEEe
Q 016982          262 IGVGF  266 (379)
Q Consensus       262 l~~~~  266 (379)
                      +..+.
T Consensus       220 lfVTg  224 (266)
T 2iwa_A          220 IFVTG  224 (266)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            55433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.13  E-value=7.6e-08  Score=77.06  Aligned_cols=194  Identities=8%  Similarity=0.028  Sum_probs=130.0

Q ss_pred             ceeEEEeCCCCcEEEEEec--CCeEEEEEecCCceEEEEEec--cCCCceEEEEEcCCCCEEEEE-eCCCeEEEEeccCC
Q 016982           12 CITCHAWSPDHAMVAFCPN--NNEVHIYKLIQEKWEKLHVLQ--KHDQIVSGIDWSVRSNRIVTV-SHDRNSYVWNQEGS   86 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~   86 (379)
                      ....++|+|++.++++.+.  ++.|.++|+.+++  .+..+.  .+. ....+++.  ++.|..+ -.++.+.++|..+.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCC
Confidence            3679999998765555443  5799999999984  444433  322 22345554  5555444 46789999999999


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec-CC---cCEEEEEEcCCCcEEEEe
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR-HD---SSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-~~---~~v~~~~~~p~~~~l~~~  162 (379)
                      +.+..+...  ...  ...+++||+.++++..++.|.++|..+.+   ....+..+ ..   ...+.+.|. ++..++..
T Consensus        97 ~v~~~i~~g--~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~---v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~  168 (266)
T 2iwa_A           97 SNIKNFTHQ--MKD--GWGLATDGKILYGSDGTSILYEIDPHTFK---LIKKHNVKYNGHRVIRLNELEYI-NGEVWANI  168 (266)
T ss_dssp             EEEEEEECC--SSS--CCEEEECSSSEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             cEEEEEECC--CCC--eEEEEECCCEEEEECCCCeEEEEECCCCc---EEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence            877776532  111  23455678878777778899998887766   34444222 11   236778888 77666666


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-------------CcceEEEEECCCCCEEE-EEcCCCeE
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-------------FSWAFGVKWSPSGNTLA-YVGHNSMI  228 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~l~-~~~~d~~i  228 (379)
                      ..++.|.+.|.                  .+++.+..+...             ......++|+|+++.|+ ++...+.+
T Consensus       169 ~~~~~V~vID~------------------~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          169 WQTDCIARISA------------------KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             TTSSEEEEEET------------------TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             CCCCeEEEEEC------------------CCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            66889999996                  677777776532             12458999999987654 55577889


Q ss_pred             EEEECCCC
Q 016982          229 YFVDDVGP  236 (379)
Q Consensus       229 ~v~d~~~~  236 (379)
                      .+.++...
T Consensus       231 ~~i~l~~~  238 (266)
T 2iwa_A          231 FEIKLHLV  238 (266)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            88887553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.10  E-value=2.1e-07  Score=78.14  Aligned_cols=240  Identities=7%  Similarity=-0.000  Sum_probs=140.4

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-----------------CCCceEEEEEcC-CCCEEEEE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-----------------HDQIVSGIDWSV-RSNRIVTV   72 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~-~~~~l~~~   72 (379)
                      ....+++|+++|+++.++..++.|..|+..++..........                 ....+..+++.+ ++ .|+.+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEE
Confidence            346788999999978888888999999987754333221110                 012468899998 55 55555


Q ss_pred             eCCCeEEEEeccCCceeeeEEeec--CCCceeEEEECC-CCCEEEEEeC-----------------CCeEEEEEeecCCc
Q 016982           73 SHDRNSYVWNQEGSEWVPTLVILR--LNRAALCVQWSP-KENKFAVGSG-----------------AKTVCICYYEQENN  132 (379)
Q Consensus        73 ~~d~~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~v~i~~~~~~~~  132 (379)
                      ...+.+..+|..++..........  .......+++.+ +|++.++-..                 ++.|..+|..++. 
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE-  176 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-
Confidence            555668888877654221111000  113467899999 8986666432                 2567776655443 


Q ss_pred             eeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEE
Q 016982          133 WWVSKLIRKRHDSSVTSVAWHPNNVFLATT-STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVK  211 (379)
Q Consensus       133 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  211 (379)
                        ..... . .......++++|+++.|..+ +..+.|.+|++....             ....+....+   .+ ...++
T Consensus       177 --~~~~~-~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~-------------~~~~~~~~~~---~g-P~gi~  235 (322)
T 2fp8_A          177 --TTLLL-K-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK-------------KGTAEVLVKI---PN-PGNIK  235 (322)
T ss_dssp             --EEEEE-E-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT-------------TTCEEEEEEC---SS-EEEEE
T ss_pred             --EEEec-c-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc-------------CCccceEEeC---CC-CCCeE
Confidence              11111 1 11234579999999865554 556889999863100             0011111221   23 67899


Q ss_pred             ECCCCCEEEEEcC----------CCeEEEEECCCCCceeeeeeeec----CCeeeEEEecCCcEEEEE-eCCCeEEEEec
Q 016982          212 WSPSGNTLAYVGH----------NSMIYFVDDVGPSPLAQNVAFRD----LPLRDVLFVSEKMVIGVG-FDCNPMVFAAD  276 (379)
Q Consensus       212 ~sp~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~-~d~~~~i~~~~  276 (379)
                      ++++|++.++...          .+.|..+|.. ++ .+..+....    ..+..+++ .++++++++ ..+.+..+...
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~-~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN-ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC-EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECCC-CC-EEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            9999987766544          4668888854 33 334444322    23566666 456666554 45566666543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=99.08  E-value=1.3e-06  Score=73.28  Aligned_cols=243  Identities=11%  Similarity=0.097  Sum_probs=135.2

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCC-ceEEEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQE-KWEKLHVL-QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      ...+.+|.|.+++..+++| ..|.|.. ..+.+ .++.+..- ......+.++.|.+ +. ++.++.++.|.. ..+.++
T Consensus        35 ~~~~~~v~~~~~~~~~~~G-~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVG-VNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEE-TTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEEc-CCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence            4578999998877777755 5676532 23322 34444321 12344788999986 43 444455665543 223332


Q ss_pred             -eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982           88 -WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus        88 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                       +............+..+.+.+++..++++ .++.|.. ..+.+..|...  . ......+..+.+.|++.+++.+...+
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~--~-~~~~~~~~~~~~~~~~~~~~~g~~G~  184 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL--V-QEAIGVMRNLNRSPSGEYVAVSSRGS  184 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE--E-CSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe--e-cCCCcceEEEEEcCCCcEEEEECCCc
Confidence             22221111123456778777777666655 4565422 22334444332  2 34556789999999988877665443


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee--
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA--  244 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--  244 (379)
                      ..+-.|-.                ..+.+.+.  ......+..+.+++++..++. +.+|.+++.+...+.. ...+.  
T Consensus       185 ~~~S~d~g----------------G~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t-W~~~~~~  244 (327)
T 2xbg_A          185 FYSTWEPG----------------QTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN-WGELLSP  244 (327)
T ss_dssp             EEEEECTT----------------CSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE-ECCCBCT
T ss_pred             EEEEeCCC----------------CCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe-eEeccCC
Confidence            33333310                01222221  123456788999999886655 4578777764222221 11111  


Q ss_pred             --eecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEE
Q 016982          245 --FRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       245 --~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~  283 (379)
                        .....+.++.+.+++.+++++.++.+ ++..+....|..
T Consensus       245 ~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~  284 (327)
T 2xbg_A          245 LRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQ  284 (327)
T ss_dssp             TSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEE
T ss_pred             cccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEE
Confidence              12235788999998898888887766 455666667764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=5.3e-08  Score=90.02  Aligned_cols=219  Identities=5%  Similarity=0.015  Sum_probs=136.0

Q ss_pred             cEEEEEec------CCeEEEEEecCCceEEEEEeccCCC--------------------------------ceEEEEEcC
Q 016982           23 AMVAFCPN------NNEVHIYKLIQEKWEKLHVLQKHDQ--------------------------------IVSGIDWSV   64 (379)
Q Consensus        23 ~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~--------------------------------~v~~~~~~~   64 (379)
                      ..+++++.      ++.|+.||..++  +.+..+.....                                ....++++|
T Consensus       175 ~~v~v~~~~~~~~~~g~v~a~D~~tG--~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~  252 (677)
T 1kb0_A          175 GKVIIGNGGAEYGVRGYITAYDAETG--ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA  252 (677)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTC--CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET
T ss_pred             CEEEEEecccccCCCCEEEEEECCCC--cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC
Confidence            44555543      689999999988  44444332111                                113578889


Q ss_pred             CCCEEEEEeCCC-------------------eEEEEeccCCceeeeEEeecCC-------CceeEEEECCCC---CEEEE
Q 016982           65 RSNRIVTVSHDR-------------------NSYVWNQEGSEWVPTLVILRLN-------RAALCVQWSPKE---NKFAV  115 (379)
Q Consensus        65 ~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~~  115 (379)
                      ++..++.+..++                   .|..+|..+++.+-.+....|.       ....-+....+|   ..++.
T Consensus       253 ~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~  332 (677)
T 1kb0_A          253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH  332 (677)
T ss_dssp             TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence            888888877654                   5999999999876666543332       112222333367   67889


Q ss_pred             EeCCCeEEEEEeecCCceeEEEEEe-------ecCCcCE------------------------EEEEEcCCCcEEEEeeC
Q 016982          116 GSGAKTVCICYYEQENNWWVSKLIR-------KRHDSSV------------------------TSVAWHPNNVFLATTST  164 (379)
Q Consensus       116 ~~~d~~v~i~~~~~~~~~~~~~~~~-------~~~~~~v------------------------~~~~~~p~~~~l~~~~~  164 (379)
                      ++.+|.++++|..+++.....+...       .....++                        ..++++|+..++++...
T Consensus       333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~  412 (677)
T 1kb0_A          333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ  412 (677)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred             ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence            9999999999998887422111000       0000001                        14678888877776543


Q ss_pred             C-------------------------------------------CeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          165 D-------------------------------------------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       165 d-------------------------------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      +                                           +.|..||+                  .+++.+-++.
T Consensus       413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~------------------~tG~~~W~~~  474 (677)
T 1kb0_A          413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP------------------VAQKAAWSVE  474 (677)
T ss_dssp             ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET------------------TTTEEEEEEE
T ss_pred             hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC------------------CCCcEEeecC
Confidence            2                                           55666765                  5566555554


Q ss_pred             cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCCeeeEEEecCCcEEE
Q 016982          202 LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       202 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~  263 (379)
                      . ..++....+...+.+++.++.||.+++||..+++.+ ..+. .+.....-+.|..+|+.++
T Consensus       475 ~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          475 H-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             E-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEE
T ss_pred             C-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEeCCEEEE
Confidence            3 223444456667888888999999999999998854 4444 3333334567778887444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.05  E-value=1e-07  Score=88.30  Aligned_cols=185  Identities=7%  Similarity=-0.008  Sum_probs=114.8

Q ss_pred             EEEEcCCCCEEEEEeCCCe-------------------EEEEeccCCceeeeEEeecCC-------CceeEEEECCCCC-
Q 016982           59 GIDWSVRSNRIVTVSHDRN-------------------SYVWNQEGSEWVPTLVILRLN-------RAALCVQWSPKEN-  111 (379)
Q Consensus        59 ~~~~~~~~~~l~~~~~d~~-------------------i~vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~-  111 (379)
                      .++++|++..++.+..++.                   |..+|..+++.+-.+....|.       .++.......+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788898889988887763                   999999999866655433232       1111122222554 


Q ss_pred             --EEEEEeCCCeEEEEEeecCCceeEEEEEe-------e-----------------cCCc-----------CEEEEEEcC
Q 016982          112 --KFAVGSGAKTVCICYYEQENNWWVSKLIR-------K-----------------RHDS-----------SVTSVAWHP  154 (379)
Q Consensus       112 --~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-------~-----------------~~~~-----------~v~~~~~~p  154 (379)
                        .++.++.+|.++++|..+++.....+...       .                 ....           .-..++++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              78889999999999988887421110000       0                 0000           011267888


Q ss_pred             CCcEEEEeeCC---------------------------------------------CeEEEEeccccccccccccCCCcc
Q 016982          155 NNVFLATTSTD---------------------------------------------GKCRVFSTFIKGVDIKEKKEGTSS  189 (379)
Q Consensus       155 ~~~~l~~~~~d---------------------------------------------~~i~v~d~~~~~~~~~~~~~~~~~  189 (379)
                      +..++++...+                                             |.|..||+                
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~----------------  462 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP----------------  462 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET----------------
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC----------------
Confidence            87777765433                                             44555654                


Q ss_pred             CCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCcEEE
Q 016982          190 DTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       190 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~  263 (379)
                        .+++.+-++..+. +.....+...+.+++.++.|+.++.||.++++.+ ..+.. +.....-+.|..+|+..+
T Consensus       463 --~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          463 --VKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL-WEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             --TTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEE
T ss_pred             --CCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc-eeeeCCCCcccCceEEEECCEEEE
Confidence              5666665554432 2233355567888999999999999999998855 44443 222234577888887443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=7.1e-08  Score=85.30  Aligned_cols=211  Identities=11%  Similarity=0.008  Sum_probs=133.4

Q ss_pred             cceeEEEe-C-CCCcEEEEEe------------------cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE
Q 016982           11 QCITCHAW-S-PDHAMVAFCP------------------NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV   70 (379)
Q Consensus        11 ~~i~~~~~-s-~~~~~l~~~~------------------~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~   70 (379)
                      ..+..+++ + |+++++++++                  .++.+.+.|.++.  +...++.--. ....++++|+|++++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~--~v~~qI~Vgg-~pd~~~~spdGk~~~  210 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKW--EVAWQVLVSG-NLDNCDADYEGKWAF  210 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTT--EEEEEEEESS-CCCCEEECSSSSEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCC--eEEEEEEeCC-CccceEECCCCCEEE
Confidence            45778887 5 9999998884                  2457899999886  5555554322 346788999999998


Q ss_pred             EEeCCC--------------------------------------eEEEEeccC--Cce-eeeEEeecCCCceeEEEECCC
Q 016982           71 TVSHDR--------------------------------------NSYVWNQEG--SEW-VPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        71 ~~~~d~--------------------------------------~i~vw~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      +.+.+.                                      .|.+.|..+  ++. ...+.   -.....++.++||
T Consensus       211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip---vg~~PhGv~~sPD  287 (595)
T 1fwx_A          211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP---IANNPHGCNMAPD  287 (595)
T ss_dssp             EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE---EESSCCCEEECTT
T ss_pred             EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe---cCCCceEEEEcCC
Confidence            887543                                      255555555  321 12221   2345678999999


Q ss_pred             CCEEEEEeC-CCeEEEEEeecCCc---------eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccc
Q 016982          110 ENKFAVGSG-AKTVCICYYEQENN---------WWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVD  179 (379)
Q Consensus       110 ~~~l~~~~~-d~~v~i~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~  179 (379)
                      |+++++++. +..|.++|+.+...         ..+...+  .-......++|+|+|...++.-.++.|.+||+......
T Consensus       288 Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~  365 (595)
T 1fwx_A          288 KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRA  365 (595)
T ss_dssp             SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHH
T ss_pred             CCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhh
Confidence            998877764 78999999986420         0012222  23345788999999955556667999999997310000


Q ss_pred             cccccCCCccCCcccceEEEeecCCcce-----EEEEECCCCCEEEEEcC---CCe----------EEEEECCCCC
Q 016982          180 IKEKKEGTSSDTKFGEQILQLDLSFSWA-----FGVKWSPSGNTLAYVGH---NSM----------IYFVDDVGPS  237 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~l~~~~~---d~~----------i~v~d~~~~~  237 (379)
                      +. .       ....+.+..+..|-.+-     ..+.++|||++|+++..   |+.          -.++|+.+.+
T Consensus       366 ~~-g-------~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          366 YA-G-------EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             HH-T-------CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             hc-c-------cccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            00 0       01134566666554321     22356899999998753   332          2789985543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.05  E-value=2.5e-07  Score=73.17  Aligned_cols=198  Identities=11%  Similarity=0.063  Sum_probs=124.3

Q ss_pred             EEEEEeccCCCc--eEEEEEcCCCCEEEEEeCCC--eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CC
Q 016982           45 EKLHVLQKHDQI--VSGIDWSVRSNRIVTVSHDR--NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GA  119 (379)
Q Consensus        45 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  119 (379)
                      +.+.+++ |...  ...+.|+ ++.+..+.+.+|  .|+++|+.+++......+   ..........++++.|.... .+
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l---~~~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL---GKRYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEESSS
T ss_pred             EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec---CCccceeEEEEeCCEEEEEEeeC
Confidence            4555664 4433  4778898 666666666665  899999999997777654   23333322333455555554 48


Q ss_pred             CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE
Q 016982          120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ  199 (379)
Q Consensus       120 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (379)
                      +.+.+||..+.+   ....+.....+  ..+  .++++.|+....++.|.++|.                  .+.+.+.+
T Consensus       107 ~~v~v~D~~t~~---~~~ti~~~~eG--~gl--t~dg~~L~~SdGs~~i~~iDp------------------~T~~v~~~  161 (262)
T 3nol_A          107 GLGFVWNIRNLR---QVRSFNYDGEG--WGL--THNDQYLIMSDGTPVLRFLDP------------------ESLTPVRT  161 (262)
T ss_dssp             SEEEEEETTTCC---EEEEEECSSCC--CCE--EECSSCEEECCSSSEEEEECT------------------TTCSEEEE
T ss_pred             CEEEEEECccCc---EEEEEECCCCc--eEE--ecCCCEEEEECCCCeEEEEcC------------------CCCeEEEE
Confidence            899999998877   45555222221  233  357777777666788999996                  55666666


Q ss_pred             eecC--C---cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee------------cCCeeeEEEecCCcEE
Q 016982          200 LDLS--F---SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR------------DLPLRDVLFVSEKMVI  262 (379)
Q Consensus       200 ~~~~--~---~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l  262 (379)
                      +...  .   ..++.+.|. +|+..+..-.++.|.+.|..+++. +..+...            ..-.+.++|+|+++.|
T Consensus       162 I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          162 ITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred             EEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence            5432  1   234567776 676665555788999999988763 3444321            1346889999987665


Q ss_pred             EEEeCCCeEEEE
Q 016982          263 GVGFDCNPMVFA  274 (379)
Q Consensus       263 ~~~~d~~~~i~~  274 (379)
                      ......=-++|.
T Consensus       240 fVTGK~Wp~~~e  251 (262)
T 3nol_A          240 FVTGKLWPKVFE  251 (262)
T ss_dssp             EEEETTCSEEEE
T ss_pred             EEECCCCCceEE
Confidence            544343344443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.03  E-value=7.6e-07  Score=74.65  Aligned_cols=189  Identities=9%  Similarity=-0.011  Sum_probs=111.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeec------------------CCCceeEEEECC-CCCEEEEE
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR------------------LNRAALCVQWSP-KENKFAVG  116 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------------------~~~~v~~~~~~~-~~~~l~~~  116 (379)
                      ...+++|.++++++.++..++.|..|+..+++... +....                  ....+..+++.+ +++ |+++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            34678999999878888888999999987765322 21100                  013478899998 555 5555


Q ss_pred             eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC-CCcEEEEeeC-----------------CCeEEEEecccccc
Q 016982          117 SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP-NNVFLATTST-----------------DGKCRVFSTFIKGV  178 (379)
Q Consensus       117 ~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~-----------------d~~i~v~d~~~~~~  178 (379)
                      ...+.+..+|...+....+..............+++.| +|++.++-..                 ++.|..+|.     
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~-----  172 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP-----  172 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET-----
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC-----
Confidence            44455777665433211111111001123468899999 8887766432                 356777764     


Q ss_pred             ccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCc-eeeeeeeecCCeeeEEEe
Q 016982          179 DIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSP-LAQNVAFRDLPLRDVLFV  256 (379)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s  256 (379)
                                   ..++. ..+.........++++|+|++|+.+ ...+.|.+|++..... ....+..... ...+++.
T Consensus       173 -------------~~~~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d  237 (322)
T 2fp8_A          173 -------------STKET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN  237 (322)
T ss_dssp             -------------TTTEE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred             -------------CCCEE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence                         22222 1111111235679999999866655 5568999999875321 1112211223 6789999


Q ss_pred             cCCcEEEEEe
Q 016982          257 SEKMVIGVGF  266 (379)
Q Consensus       257 ~~~~~l~~~~  266 (379)
                      ++|+++++..
T Consensus       238 ~~G~l~va~~  247 (322)
T 2fp8_A          238 ADGHFWVSSS  247 (322)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCCEEEEec
Confidence            9998777554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.03  E-value=7.5e-07  Score=76.48  Aligned_cols=227  Identities=11%  Similarity=0.054  Sum_probs=130.3

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCC-
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNR-   99 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-   99 (379)
                      ++..+++++.++.|..+|..+++  .+................  +..++.++.++.|..+|..+++..-......... 
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~--~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~  177 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGT--VAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS  177 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCC--EEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--EEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence            34567778889999999999874  433333322211122222  4577888889999999999997555443211100 


Q ss_pred             --ceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-----CEEEEEEcC--CCcEEEEeeCCCeEEE
Q 016982          100 --AALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-----SVTSVAWHP--NNVFLATTSTDGKCRV  170 (379)
Q Consensus       100 --~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p--~~~~l~~~~~d~~i~v  170 (379)
                        ........  +..++++..++.+..+|..+++..+....  .....     .+..+.-.|  .+..+..++.++.+..
T Consensus       178 ~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          178 LRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRI--SQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             -CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEEC--CC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred             ecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEec--ccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence              00112222  45678888899999999887763221111  00000     000011111  2456777778899999


Q ss_pred             EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee-eecCC
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA-FRDLP  249 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~  249 (379)
                      +|.                  .+++.+-....  .....+..  ++..++.++.++.+..+|..+++.. .... .....
T Consensus       254 ~d~------------------~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~~~~~~  310 (376)
T 3q7m_A          254 LDL------------------RSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSDLLHRL  310 (376)
T ss_dssp             EET------------------TTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECTTTTSC
T ss_pred             EEC------------------CCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEE-EeecccCCCc
Confidence            996                  55665544432  22334443  3567777888999999999888744 3322 11222


Q ss_pred             eeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982          250 LRDVLFVSEKMVIGVGFDCNPMVFAADETG  279 (379)
Q Consensus       250 i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~  279 (379)
                      +..... .++.+++++.++.+..++.....
T Consensus       311 ~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~  339 (376)
T 3q7m_A          311 LTSPVL-YNGNLVVGDSEGYLHWINVEDGR  339 (376)
T ss_dssp             CCCCEE-ETTEEEEECTTSEEEEEETTTCC
T ss_pred             ccCCEE-ECCEEEEEeCCCeEEEEECCCCc
Confidence            333333 25666667778888888866543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.02  E-value=1.3e-10  Score=99.43  Aligned_cols=185  Identities=14%  Similarity=0.032  Sum_probs=99.6

Q ss_pred             CCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCC
Q 016982           65 RSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHD  144 (379)
Q Consensus        65 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~  144 (379)
                      ++..+++++.|+.|..||..+++..-.+..    ..+.+..+..++..+++++.|+.|+.||..+++..+   .. ..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w---~~-~~~~   79 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT---KL-PFTI   79 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTTTCCEEEC-----CCSE---EC-SCCH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee---ee-eccC
Confidence            467899999999999999999986655532    445555556677788888899999999998776311   11 1110


Q ss_pred             -cCEE-EEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE
Q 016982          145 -SSVT-SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV  222 (379)
Q Consensus       145 -~~v~-~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~  222 (379)
                       ..+. ...+. .+..+++++.++.++.||.                  .+++.+..+..+.    ...++|++..++++
T Consensus        80 ~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~------------------~tG~~~w~~~~~~----~~~~~p~~~~v~~~  136 (369)
T 2hz6_A           80 PELVQASPCRS-SDGILYMGKKQDIWYVIDL------------------LTGEKQQTLSSAF----ADSLSPSTSLLYLG  136 (369)
T ss_dssp             HHHHTTCSCC------CCCCEEEEEEEEECC------------------C--------------------------EEEE
T ss_pred             ccccccCceEe-cCCEEEEEeCCCEEEEEEC------------------CCCcEEEEecCCC----cccccccCCEEEEE
Confidence             0010 00111 3456778888999999996                  5666665554432    23456788889999


Q ss_pred             cCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecC----CcEEEEEeCCCeEEEEecCCC-cEEE
Q 016982          223 GHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSE----KMVIGVGFDCNPMVFAADETG-IWTF  283 (379)
Q Consensus       223 ~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~d~~~~i~~~~~~~-~~~~  283 (379)
                      +.++.|+.||..+++.+ ..+....  ....++.++    +.+++++.++.+..|+..... .|+.
T Consensus       137 ~~dg~v~a~d~~tG~~~-W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          137 RTEYTITMYDTKTRELR-WNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             EEEEEEECCCSSSSSCC-CEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             ecCCEEEEEECCCCCEE-EeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            99999999999887754 3332221  123334442    567778888889888876443 4654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.02  E-value=2.1e-06  Score=68.36  Aligned_cols=207  Identities=9%  Similarity=0.095  Sum_probs=133.0

Q ss_pred             EEeccCCCceEEEEEcCCCCEEE-EEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEE
Q 016982           48 HVLQKHDQIVSGIDWSVRSNRIV-TVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY  126 (379)
Q Consensus        48 ~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~  126 (379)
                      +.+.+-...+..++|+|+++.|+ +...++.|...|.. ++....+.+. .......+++.+++.++++.-.++.+.+++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-FVKDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-SCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-CCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            45666667899999999876655 46678889999988 7666665432 235778899998887666655678898988


Q ss_pred             eecCCceeEEEEEe-----ecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-
Q 016982          127 YEQENNWWVSKLIR-----KRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-  200 (379)
Q Consensus       127 ~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  200 (379)
                      +.............     .........++|+|.++.|.++.......+|.+..     .          .....+..+ 
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-----~----------~~~~~l~i~~  162 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-----L----------LSSNELHISK  162 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-----T----------TCSSCCEEEE
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-----c----------ccCCceeeec
Confidence            87655311122221     12345578999999987777777665666665520     0          000011111 


Q ss_pred             ------ecCCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCceeeeeeeec---------CCeeeEEEecCCcEEEE
Q 016982          201 ------DLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD---------LPLRDVLFVSEKMVIGV  264 (379)
Q Consensus       201 ------~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~  264 (379)
                            ..+...+.+++++|. +++++.......+.++|....  .+..+.-..         ...-.|+|.++|++.++
T Consensus       163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             CHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE
T ss_pred             chhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE
Confidence                  012234688999994 566667778889999996654  223332211         14578999999997777


Q ss_pred             EeCCCeEEE
Q 016982          265 GFDCNPMVF  273 (379)
Q Consensus       265 ~~d~~~~i~  273 (379)
                      +..+.++.|
T Consensus       241 sE~n~~y~f  249 (255)
T 3qqz_A          241 SEPNRFYRF  249 (255)
T ss_dssp             ETTTEEEEE
T ss_pred             cCCceEEEE
Confidence            766544444

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.99  E-value=3.1e-06  Score=67.37  Aligned_cols=203  Identities=12%  Similarity=0.118  Sum_probs=130.4

Q ss_pred             eeccCcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEe--ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            6 VHQFAQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVL--QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      +-+-...+..++|+|+++.| ++...++.|...|.. +  +.++.+  .+. .....+++.+++.++++.-.++.+.+++
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g--~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G--DLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C--CEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C--CEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            34455789999999976654 556677888888887 4  344443  332 4567899998887766665678899998


Q ss_pred             ccCCce---eeeEEe----ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe------ecCCcCEEE
Q 016982           83 QEGSEW---VPTLVI----LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR------KRHDSSVTS  149 (379)
Q Consensus        83 ~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~------~~~~~~v~~  149 (379)
                      +.....   .....+    ...+.....++|+|.++.|.++.+.....+|.++..........+.      ..+...+.+
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence            765542   122211    1234567899999999888888776666777776211000011110      112345789


Q ss_pred             EEEcCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC---------cceEEEEECCCCCEE
Q 016982          150 VAWHPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF---------SWAFGVKWSPSGNTL  219 (379)
Q Consensus       150 ~~~~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~l  219 (379)
                      ++++|.. ++++.......+.++|.                   .++.+..+....         ...-.++|.|+|++.
T Consensus       178 l~~dp~tg~lliLS~~s~~L~~~d~-------------------~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly  238 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRALQEVTL-------------------VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY  238 (255)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECT-------------------TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred             EEEcCCCCeEEEEECCCCeEEEEcC-------------------CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence            9999965 56666667788888885                   344444433221         245789999999855


Q ss_pred             EEEcCCCeEEEEE
Q 016982          220 AYVGHNSMIYFVD  232 (379)
Q Consensus       220 ~~~~~d~~i~v~d  232 (379)
                      ++ ++.+.++.+.
T Consensus       239 Iv-sE~n~~y~f~  250 (255)
T 3qqz_A          239 IV-SEPNRFYRFT  250 (255)
T ss_dssp             EE-ETTTEEEEEE
T ss_pred             EE-cCCceEEEEE
Confidence            55 6667777775

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.98  E-value=1.2e-06  Score=72.93  Aligned_cols=228  Identities=9%  Similarity=-0.050  Sum_probs=131.7

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-C-eEEEEeccCCce
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-R-NSYVWNQEGSEW   88 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~-~i~vw~~~~~~~   88 (379)
                      .....++|+++|+++++-..++.|..||..+.   ....+. .......+++.++|+++++.... + .|..++..+++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            56788999999997777667889999987764   222222 23468899999999866554332 2 466777777765


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEE-------EeecCCcCEEEEEEcCCCcEEE-
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKL-------IRKRHDSSVTSVAWHPNNVFLA-  160 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~p~~~~l~-  160 (379)
                      ...... ........++..+++..+++-..++.|+.+|...+... +...       ...........+  +|+++.|. 
T Consensus       108 ~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~-v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          108 ETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS-IWLEHPMLARSNSESVFPAANGL--KRFGNFLYV  183 (306)
T ss_dssp             EEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE-EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred             EEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe-EEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence            433322 22223345555555544554445788877776543210 1100       000111234555  77876554 


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce-
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL-  239 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~-  239 (379)
                      +-...+.|..+++...      ..      ....+....+    .....++++++|+++++....+.|.++|.. ++.. 
T Consensus       184 ~d~~~~~I~~~~~~~~------g~------~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~  246 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDST------DK------PGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI  246 (306)
T ss_dssp             EETTTTEEEEEEBCTT------SC------BCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred             EeCCCCEEEEEEeCCC------CC------CCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE
Confidence            4455788999987310      00      0001111111    235678999999887776677899999965 3311 


Q ss_pred             eeeeeeecCCeeeEEEe---cCCcEEE
Q 016982          240 AQNVAFRDLPLRDVLFV---SEKMVIG  263 (379)
Q Consensus       240 ~~~~~~~~~~i~~~~~s---~~~~~l~  263 (379)
                      +..+.......++++|.   |++..|.
T Consensus       247 ~~~~~~~~~~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          247 IAQAEQGVIGSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             EECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             EeecccccCCceEEEEecccCCCCEEE
Confidence            12222222457899998   7866554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.98  E-value=3.9e-07  Score=72.10  Aligned_cols=181  Identities=14%  Similarity=0.186  Sum_probs=119.0

Q ss_pred             eeEEEeCCCCcEEEEEecCC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCcee
Q 016982           13 ITCHAWSPDHAMVAFCPNNN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWV   89 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~   89 (379)
                      ...+.|+ ++.++.+.+.+|  .|+.+|+++++  .+..+.-.. ........++++.|.... .++.+.++|..+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK--TLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC--EEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCc--EEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            4788888 676667776666  89999999984  444443322 333333333455655544 5789999999999987


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEee-cCC---cCEEEEEEcCCCcEEEEeeCC
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRK-RHD---SSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ..+....   .-..+  +++++.|+.+..++.|.++|..+.+   ....+.. ...   ..++.+.|. +|+.++....+
T Consensus       121 ~ti~~~~---eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~---v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          121 RSFNYDG---EGWGL--THNDQYLIMSDGTPVLRFLDPESLT---PVRTITVTAHGEELPELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             EEEECSS---CCCCE--EECSSCEEECCSSSEEEEECTTTCS---EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             EEEECCC---CceEE--ecCCCEEEEECCCCeEEEEcCCCCe---EEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence            7775422   22333  3567777777767889998887766   3444322 111   334567776 77777666678


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecC------------CcceEEEEECCCCCEEEEEcC
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS------------FSWAFGVKWSPSGNTLAYVGH  224 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~sp~~~~l~~~~~  224 (379)
                      +.|.+.|.                  .+++.+..+...            ....+.++|+|+++.|+..+.
T Consensus       192 ~~I~vIDp------------------~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          192 NKIVRIDP------------------ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SEEEEECT------------------TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEEC------------------CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            89999996                  566666655432            124689999998887777664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=2.2e-06  Score=69.65  Aligned_cols=226  Identities=9%  Similarity=0.017  Sum_probs=130.9

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEE---EEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeEEeecC
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEK---LHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILRL   97 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~   97 (379)
                      |.+|..+.. +.|+.+++.+.....   ...+......+..++|+++++.|+.+. .++.|..+++.+.......  ...
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~--~~~   77 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--RQD   77 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--CTT
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE--ECC
Confidence            345666654 588989987653210   111111223568999999776666554 5678999998776432211  222


Q ss_pred             CCceeEEEECCCCCEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---CCeEEEEec
Q 016982           98 NRAALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---DGKCRVFST  173 (379)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~v~d~  173 (379)
                      ......++++|++..|+.+ ...+.|.+++++....   .... .........++++|++..|..+..   .+.|..+++
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---~~~~-~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~  153 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR---RVLF-DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEE-CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE---EEEE-ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence            2567899999976555554 4467898888765431   1222 222245689999996555544443   367877775


Q ss_pred             cccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeeeeeeecCCee
Q 016982          174 FIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQNVAFRDLPLR  251 (379)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~i~  251 (379)
                      .                   +.....+ .........++++|++..|+.+ ...+.|.++|+.... ....+.. .....
T Consensus       154 d-------------------g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~-~~~P~  212 (267)
T 1npe_A          154 D-------------------GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-RRKVLEG-LQYPF  212 (267)
T ss_dssp             T-------------------SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-EEEEEEC-CCSEE
T ss_pred             C-------------------CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc-eEEEecC-CCCce
Confidence            2                   1111111 1222457899999987766554 456899999987543 2122222 22345


Q ss_pred             eEEEecCCcEEEEEe-CCCeEEEEec
Q 016982          252 DVLFVSEKMVIGVGF-DCNPMVFAAD  276 (379)
Q Consensus       252 ~~~~s~~~~~l~~~~-d~~~~i~~~~  276 (379)
                      .++.. ++.++++.. .+.+..++..
T Consensus       213 gi~~d-~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          213 AVTSY-GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             EEEEe-CCEEEEEECCCCeEEEEeCC
Confidence            66654 344444443 3456555544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.95  E-value=5.4e-07  Score=83.22  Aligned_cols=194  Identities=11%  Similarity=0.116  Sum_probs=114.5

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCc----------e-EEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI----------V-SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      +..+++++.++.|+-+|..++  +.+..+......          + ..+++  .+..++.++.|+.|..+|..+++.+-
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  141 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASG--KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW  141 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCC--hhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee
Confidence            456667778899999999888  455444332110          0 11222  25678888899999999999998665


Q ss_pred             eEEeecCCCceeEEEECC--CCCEEEEEeC------CCeEEEEEeecCCceeEEEEEeecC-------------------
Q 016982           91 TLVILRLNRAALCVQWSP--KENKFAVGSG------AKTVCICYYEQENNWWVSKLIRKRH-------------------  143 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~~~~-------------------  143 (379)
                      ........ ....+.-+|  .+..++++..      ++.|..+|..+++..+..... ...                   
T Consensus       142 ~~~~~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          142 SQQTTDPA-KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV-PGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             EEECSCTT-SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS-CCCTTSCCSSHHHHHHHTTCCS
T ss_pred             eeccCCCC-CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc-CCCCCccccccccccccccCCc
Confidence            55432111 011111122  1345555543      588999999888743322211 000                   


Q ss_pred             ---------CcCEEEEEEcCCCcEEEEeeCCCe-------------------EEEEeccccccccccccCCCccCCcccc
Q 016982          144 ---------DSSVTSVAWHPNNVFLATTSTDGK-------------------CRVFSTFIKGVDIKEKKEGTSSDTKFGE  195 (379)
Q Consensus       144 ---------~~~v~~~~~~p~~~~l~~~~~d~~-------------------i~v~d~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
                               ......+++.|+...++.++.++.                   |..+|.                  .+++
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~------------------~tG~  281 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP------------------DTGK  281 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT------------------TTCC
T ss_pred             cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC------------------CCCc
Confidence                     011124678888888888776653                   777775                  5666


Q ss_pred             eEEEeec--CC-------cceEEEEECCCCC---EEEEEcCCCeEEEEECCCCCce
Q 016982          196 QILQLDL--SF-------SWAFGVKWSPSGN---TLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       196 ~~~~~~~--~~-------~~v~~~~~sp~~~---~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      .+-.++.  |.       .+.....+..+|+   .++.++.+|.++++|..+++.+
T Consensus       282 ~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            6655543  21       1222222223565   6888899999999999888743

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.91  E-value=1.6e-05  Score=75.34  Aligned_cols=236  Identities=10%  Similarity=0.044  Sum_probs=150.4

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-----cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-----KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      ..|.++...++|.+.+ |+.+ -|.+|+..++.+.......     -....|.++...++|+.. .|+.++-|..++..+
T Consensus       263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIR  339 (795)
T ss_dssp             SBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGG
T ss_pred             CeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCc
Confidence            5699999988887554 4454 5888998776333221111     123579999999888654 466666788998766


Q ss_pred             CceeeeEEee----cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec--------CCcCEEEEEEc
Q 016982           86 SEWVPTLVIL----RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR--------HDSSVTSVAWH  153 (379)
Q Consensus        86 ~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~  153 (379)
                      ..........    -....|.++...++|+ |.+|+.++-|..|+..++.    ...+...        ....|.++...
T Consensus       340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d  414 (795)
T 4a2l_A          340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR----FTSYTLQEDESARGIGSNNIKAVYVD  414 (795)
T ss_dssp             GSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC----EEEECCC------CCSCSCEEEEEEE
T ss_pred             ccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc----EEEEecCCCCcccCCCCccEEEEEEc
Confidence            5422211000    0235688998888876 5557777678888766554    2222111        23578999988


Q ss_pred             CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-----cCCcceEEEEECCCCCEEEEEcCCCeE
Q 016982          154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-----LSFSWAFGVKWSPSGNTLAYVGHNSMI  228 (379)
Q Consensus       154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~d~~i  228 (379)
                      ++++.|..|+.++-+..||..                  +++ ...+.     .....|.++...++|.+.+...  +.+
T Consensus       415 ~~g~~lWigt~~~Gl~~~d~~------------------~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl  473 (795)
T 4a2l_A          415 EKKSLVYIGTHAGGLSILHRN------------------SGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SAL  473 (795)
T ss_dssp             TTTTEEEEEETTTEEEEEETT------------------TCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCE
T ss_pred             CCCCEEEEEeCcCceeEEeCC------------------CCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEec--Cce
Confidence            888856667777779999852                  222 22221     1245689999999888666543  458


Q ss_pred             EEEECCCCCceeeeeee-------ecCCeeeEEEecCCcEEEEEeCCCeEEEEecCC
Q 016982          229 YFVDDVGPSPLAQNVAF-------RDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET  278 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~  278 (379)
                      .+||..+.. . ..+..       ....|.++...++|++.+++. +.+..|+....
T Consensus       474 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~  527 (795)
T 4a2l_A          474 VRFNPEQRS-F-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGL  527 (795)
T ss_dssp             EEEETTTTE-E-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETT
T ss_pred             eEEeCCCCe-E-EEccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCC
Confidence            889976643 2 22211       235688899999999888776 67777776543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.90  E-value=1.3e-05  Score=76.00  Aligned_cols=234  Identities=10%  Similarity=0.016  Sum_probs=150.7

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc----CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK----HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      ..|.++...++|.+ -.|+.++-|..|+..++.+........    ....|.++...++|++. .|+.++-|..|+..++
T Consensus       310 ~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          310 RSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             SCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTC
T ss_pred             CcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCC
Confidence            57999999988874 456677789999877654333322111    23468999998888654 4666767999998877


Q ss_pred             ceeeeEEee------cCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEee----cCCcCEEEEEEcCCC
Q 016982           87 EWVPTLVIL------RLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRK----RHDSSVTSVAWHPNN  156 (379)
Q Consensus        87 ~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~p~~  156 (379)
                      +........      -....|.++...++++.|.+|+.++-|..+|..++.    ...+..    .....|.++...+++
T Consensus       388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~----~~~~~~~~~~l~~~~v~~i~~d~~g  463 (795)
T 4a2l_A          388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ----VENFNQRNSQLVNENVYAILPDGEG  463 (795)
T ss_dssp             CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----EEEECTTTSCCSCSCEEEEEECSSS
T ss_pred             cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----EEEeecCCCCcCCCeeEEEEECCCC
Confidence            543321100      023568899888888857777877778888877665    222211    134578999988888


Q ss_pred             cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-------cCCcceEEEEECCCCCEEEEEcCCCeEE
Q 016982          157 VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-------LSFSWAFGVKWSPSGNTLAYVGHNSMIY  229 (379)
Q Consensus       157 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~~~~~d~~i~  229 (379)
                      ++.+.. .+ .+.+||..                  +++ ...+.       .....|.++...++|.+.+...  +.|.
T Consensus       464 ~lwigt-~~-Gl~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~  520 (795)
T 4a2l_A          464 NLWLGT-LS-ALVRFNPE------------------QRS-FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLS  520 (795)
T ss_dssp             CEEEEE-SS-CEEEEETT------------------TTE-EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEE
T ss_pred             CEEEEe-cC-ceeEEeCC------------------CCe-EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceE
Confidence            755544 44 58888852                  211 11221       1235688999999998766554  5588


Q ss_pred             EEECCCCCceeeeee-------eecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          230 FVDDVGPSPLAQNVA-------FRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       230 v~d~~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                      .||..+...   .+.       .....|.++...++|.+.+++.. .+..|+...
T Consensus       521 ~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~  571 (795)
T 4a2l_A          521 VFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKD  571 (795)
T ss_dssp             EEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTT
T ss_pred             EEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCC
Confidence            888765431   111       12356888998899998876665 677776443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.89  E-value=8.6e-08  Score=88.63  Aligned_cols=116  Identities=13%  Similarity=0.194  Sum_probs=80.3

Q ss_pred             EEEeCC-CCcEEEEEecCC-----------eEEEEEecCCceEEEEEeccC-CCceEEEEEcCCCCEEEEEeC-CCeEEE
Q 016982           15 CHAWSP-DHAMVAFCPNNN-----------EVHIYKLIQEKWEKLHVLQKH-DQIVSGIDWSVRSNRIVTVSH-DRNSYV   80 (379)
Q Consensus        15 ~~~~s~-~~~~l~~~~~dg-----------~i~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~i~v   80 (379)
                      .+++.| ++++++.|+.+.           .+.+||..++++..+..+... .....++++.++++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556667 888888887542           688999998877666555432 233445778889999999884 457999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CC-----CeEEEEEeecCC
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GA-----KTVCICYYEQEN  131 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~v~i~~~~~~~  131 (379)
                      ||..+.++...-.. .....-.+++..+++++++.|+ .+     ..+.+||..+..
T Consensus       270 yd~~t~~W~~~~~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99998876654321 2222234556667899999988 34     468888887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.89  E-value=4.3e-07  Score=71.84  Aligned_cols=179  Identities=9%  Similarity=0.049  Sum_probs=117.1

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeee
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      ...+.|+ ++.+..+.+.+|.|+.+|+++++..... +.... --..+++.  ++.| +..-.++.+.+||..+.+.+..
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~-FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI-FAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC-CEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc-ceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            4688887 4566677778889999999998533322 33211 11234444  4444 4445688999999999998877


Q ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEee-cCC---cCEEEEEEcCCCcEEEEeeCCCe
Q 016982           92 LVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRK-RHD---SSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                      +...   ..-..++  ++++.|+.+..++.|.++|..+.+   ....+.. .+.   ..++.+.|. +|+.++....+..
T Consensus       132 i~~~---~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          132 TRYS---GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---LVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EECS---SCCCCEE--EETTEEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             EeCC---CceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---EEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence            7642   2223444  567888887778899998887766   3444321 222   245677777 7776666667889


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecC-------------CcceEEEEECCCCCEEEEEc
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-------------FSWAFGVKWSPSGNTLAYVG  223 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~l~~~~  223 (379)
                      |.+.|.                  .+++.+..+...             ..-.+.++++|+++.|+..+
T Consensus       203 I~vIDp------------------~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          203 VLEIDP------------------ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEECT------------------TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEeC------------------CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            999996                  566666665432             13468999999766665554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.83  E-value=4.4e-06  Score=66.11  Aligned_cols=189  Identities=10%  Similarity=-0.032  Sum_probs=119.9

Q ss_pred             EEEEEeccCCCc--eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEE-EeCCCe
Q 016982           45 EKLHVLQKHDQI--VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAV-GSGAKT  121 (379)
Q Consensus        45 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~  121 (379)
                      +.+.++. |...  ...+.|+ ++.+..+.+.+|.|+++|+++++....+ +.. ..-...+++.  ++.|.. .-.++.
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~--g~~Ly~ltw~~~~  117 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASD--GERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEEC--SSCEEEEESSSCE
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEe--CCEEEEEEccCCE
Confidence            3455553 4432  3678887 3556677788889999999999877766 322 1111234443  444444 445889


Q ss_pred             EEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee
Q 016982          122 VCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD  201 (379)
Q Consensus       122 v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
                      +.+||..+.+   ....+...  ..-..++  ++++.|+.+..++.|.++|.                  .+.+.+.++.
T Consensus       118 v~V~D~~Tl~---~~~ti~~~--~eGwGLt--~Dg~~L~vSdGs~~l~~iDp------------------~T~~v~~~I~  172 (268)
T 3nok_A          118 LFTWSGMPPQ---RERTTRYS--GEGWGLC--YWNGKLVRSDGGTMLTFHEP------------------DGFALVGAVQ  172 (268)
T ss_dssp             EEEEETTTTE---EEEEEECS--SCCCCEE--EETTEEEEECSSSEEEEECT------------------TTCCEEEEEE
T ss_pred             EEEEECCcCc---EEEEEeCC--CceeEEe--cCCCEEEEECCCCEEEEEcC------------------CCCeEEEEEE
Confidence            9999998877   45555222  2223444  46777777777889999996                  5566666554


Q ss_pred             cC--C---cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee-------------cCCeeeEEEecCCc-EE
Q 016982          202 LS--F---SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR-------------DLPLRDVLFVSEKM-VI  262 (379)
Q Consensus       202 ~~--~---~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~-~l  262 (379)
                      ..  .   ..++.+.|. +|+..+..-.++.|.+.|..+++. +..+...             ..-.+.|+|+|+++ ++
T Consensus       173 V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlf  250 (268)
T 3nok_A          173 VKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIF  250 (268)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEE
T ss_pred             eCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEE
Confidence            31  1   134667777 776555555688999999988763 3444321             13468899999755 55


Q ss_pred             EEEe
Q 016982          263 GVGF  266 (379)
Q Consensus       263 ~~~~  266 (379)
                      ++|.
T Consensus       251 VTGK  254 (268)
T 3nok_A          251 MTGK  254 (268)
T ss_dssp             EEET
T ss_pred             EeCC
Confidence            5554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.83  E-value=8.9e-06  Score=63.80  Aligned_cols=190  Identities=11%  Similarity=0.059  Sum_probs=117.8

Q ss_pred             EEEEEeccCCC--ceEEEEEcCCCCEEEEEeCC--CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEE-eCC
Q 016982           45 EKLHVLQKHDQ--IVSGIDWSVRSNRIVTVSHD--RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVG-SGA  119 (379)
Q Consensus        45 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d  119 (379)
                      +.+.+++ |+.  -...+.|++ +.+..+.+.+  ..|+.+|+.+++......+..   ........+.++.|... -.+
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~---~~fgeGi~~~~~~ly~ltw~~   84 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP---PYFGAGIVAWRDRLIQLTWRN   84 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT---TCCEEEEEEETTEEEEEESSS
T ss_pred             EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC---CcceeEEEEeCCEEEEEEeeC
Confidence            5556663 543  356899986 5555666654  489999999999777665422   22222222234444444 458


Q ss_pred             CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE
Q 016982          120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ  199 (379)
Q Consensus       120 ~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (379)
                      +.+.+||.++.+   ....+.....+  ..++  ++++.|+.+..++.|.++|.                  .+.+.+.+
T Consensus        85 ~~v~v~D~~tl~---~~~ti~~~~~G--wglt--~dg~~L~vSdgs~~l~~iDp------------------~t~~~~~~  139 (243)
T 3mbr_X           85 HEGFVYDLATLT---PRARFRYPGEG--WALT--SDDSHLYMSDGTAVIRKLDP------------------DTLQQVGS  139 (243)
T ss_dssp             SEEEEEETTTTE---EEEEEECSSCC--CEEE--ECSSCEEEECSSSEEEEECT------------------TTCCEEEE
T ss_pred             CEEEEEECCcCc---EEEEEeCCCCc--eEEe--eCCCEEEEECCCCeEEEEeC------------------CCCeEEEE
Confidence            899999988877   45555222222  3444  46766666666889999996                  55566665


Q ss_pred             eecCC-----cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee-------------cCCeeeEEEecCCcE
Q 016982          200 LDLSF-----SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR-------------DLPLRDVLFVSEKMV  261 (379)
Q Consensus       200 ~~~~~-----~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~  261 (379)
                      +....     ..++.+.+. +|+..+..-.+..|.+.|..+++. +..+...             ..-.+.++++|+++.
T Consensus       140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~  217 (243)
T 3mbr_X          140 IKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR  217 (243)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred             EEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence            54321     235566665 666555555678999999988763 3444311             134688999997665


Q ss_pred             EE-EEe
Q 016982          262 IG-VGF  266 (379)
Q Consensus       262 l~-~~~  266 (379)
                      |. +|.
T Consensus       218 lfVTGK  223 (243)
T 3mbr_X          218 LFVTGK  223 (243)
T ss_dssp             EEEEET
T ss_pred             EEEECC
Confidence            54 553

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.82  E-value=3.7e-06  Score=76.04  Aligned_cols=106  Identities=9%  Similarity=0.072  Sum_probs=62.7

Q ss_pred             CcEEEEEec-CCeEEEEEe-cCCceEEEEEeccCCC-c----------eEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           22 HAMVAFCPN-NNEVHIYKL-IQEKWEKLHVLQKHDQ-I----------VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        22 ~~~l~~~~~-dg~i~i~~~-~~~~~~~~~~~~~~~~-~----------v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      +..+++++. ++.|.-+|. .+++  .+..+..... .          -..+++  .+..++.++.|+.|..+|..+++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~  137 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGK--IVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKI  137 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTS--EEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCcc--EEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence            345556666 789999999 7873  4444332111 0          011222  256788888899999999999986


Q ss_pred             eeeEEeecCCCceeEEEECC--CCCEEEEEeC------CCeEEEEEeecCCc
Q 016982           89 VPTLVILRLNRAALCVQWSP--KENKFAVGSG------AKTVCICYYEQENN  132 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~  132 (379)
                      +-......+... ..+.-+|  .+..+++++.      ++.|..+|..+++.
T Consensus       138 ~W~~~~~~~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~  188 (571)
T 2ad6_A          138 NWEVEVCDPKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             EEEEECCCGGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             EEEecCCCCCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcE
Confidence            655543221110 0111122  1345555554      78999999988874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.81  E-value=6.7e-06  Score=64.49  Aligned_cols=183  Identities=10%  Similarity=0.098  Sum_probs=116.6

Q ss_pred             cceeEEEeCCCCcEEEEEecC--CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCCeEEEEeccCCc
Q 016982           11 QCITCHAWSPDHAMVAFCPNN--NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDRNSYVWNQEGSE   87 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~vw~~~~~~   87 (379)
                      .-...+.|++ +.++.+.+.+  ..|+.+|+.+++......+..+.- -..+++  .++.|.. .-.++.+.++|..+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f-geGi~~--~~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF-GAGIVA--WRDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC-EEEEEE--ETTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc-eeEEEE--eCCEEEEEEeeCCEEEEEECCcCc
Confidence            4566899986 5555665554  489999999984333333332211 123333  3445544 4568899999999998


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEee-cCC---cCEEEEEEcCCCcEEEEee
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRK-RHD---SSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~p~~~~l~~~~  163 (379)
                      .+..+...   ..-..++  +++..|+++..++.|.++|..+.+   ..+.+.. .+.   ..++.+.|. +|+.++...
T Consensus        97 ~~~ti~~~---~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~---~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           97 PRARFRYP---GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ---QVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             EEEEEECS---SCCCEEE--ECSSCEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             EEEEEeCC---CCceEEe--eCCCEEEEECCCCeEEEEeCCCCe---EEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            87777543   2224444  567777777778889998887766   3444421 121   345667766 677666666


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-------------CcceEEEEECCCCCEEEEEcC
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-------------FSWAFGVKWSPSGNTLAYVGH  224 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~sp~~~~l~~~~~  224 (379)
                      .+..|.+.|.                  .+++.+..+...             ..-.+.++++|+++.|+..+.
T Consensus       168 ~s~~I~vIDp------------------~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          168 LTSRIARIDP------------------ASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTEEEEECT------------------TTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEEC------------------CCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            6888999996                  556665555321             134689999998777666653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=1.3e-05  Score=69.75  Aligned_cols=154  Identities=10%  Similarity=0.158  Sum_probs=96.0

Q ss_pred             ceeEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-C----eEEEEeccC
Q 016982           12 CITCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-R----NSYVWNQEG   85 (379)
Q Consensus        12 ~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~----~i~vw~~~~   85 (379)
                      ....++++| ++..|.++...+.|+.+|+.++.   +..+.........++|++++++|+.+... +    .+...+. .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence            567889998 45556655555789999988763   22233344567899999999966666542 1    2333443 3


Q ss_pred             CceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE-EEEee
Q 016982           86 SEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF-LATTS  163 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~  163 (379)
                      +.......+. .-.....++++| ++.++++-..++.|..++.....   ...............++|+|++++ +++-.
T Consensus       214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---~~~~~~~~~~~~P~gia~~pdG~~lyv~d~  289 (430)
T 3tc9_A          214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---TTPLFTIQDSGWEFHIQFHPSGNYAYIVVV  289 (430)
T ss_dssp             GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---EEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence            3322111111 234567889999 67666666667888888876554   112221222244678999999984 45555


Q ss_pred             CCCeEEEEec
Q 016982          164 TDGKCRVFST  173 (379)
Q Consensus       164 ~d~~i~v~d~  173 (379)
                      ..+.|..++.
T Consensus       290 ~~~~I~~~~~  299 (430)
T 3tc9_A          290 NQHYILRSDY  299 (430)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCEEEEEeC
Confidence            6788999876

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.78  E-value=8.4e-06  Score=73.81  Aligned_cols=195  Identities=13%  Similarity=0.097  Sum_probs=110.3

Q ss_pred             CcEEEEEec-CCeEEEEEe-cCCceEEEEEeccCCC-----------ceEEEEEcCCCCE----EEEEeCCCeEEEEecc
Q 016982           22 HAMVAFCPN-NNEVHIYKL-IQEKWEKLHVLQKHDQ-----------IVSGIDWSVRSNR----IVTVSHDRNSYVWNQE   84 (379)
Q Consensus        22 ~~~l~~~~~-dg~i~i~~~-~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~----l~~~~~d~~i~vw~~~   84 (379)
                      +..+++++. ++.|.-+|. .++  +.+-.+.....           ....++++|.+..    |+.++.|+.|.-+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG--~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCC--cEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence            345666666 789999999 787  34444332211           0123555444444    8888899999999999


Q ss_pred             CCceeeeEEeecCCC--cee-EEEECCCCCEEEEEe------CCCeEEEEEeecCCceeEEEEEeecC------------
Q 016982           85 GSEWVPTLVILRLNR--AAL-CVQWSPKENKFAVGS------GAKTVCICYYEQENNWWVSKLIRKRH------------  143 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~--~v~-~~~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~~~~------------  143 (379)
                      +++.+-......+..  .+. ...+. ++ .+++++      .++.|+.+|.++++..+.........            
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~  217 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN  217 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred             CCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence            998655543322110  111 11111 33 455554      37899999998887432222110000            


Q ss_pred             ---------------------CcCE-EEEEEcCCCcEEEEeeCCC----------------eEEEEeccccccccccccC
Q 016982          144 ---------------------DSSV-TSVAWHPNNVFLATTSTDG----------------KCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       144 ---------------------~~~v-~~~~~~p~~~~l~~~~~d~----------------~i~v~d~~~~~~~~~~~~~  185 (379)
                                           ...+ ..+++.+...+++.++.++                .|..+|.            
T Consensus       218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~------------  285 (599)
T 1w6s_A          218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA------------  285 (599)
T ss_dssp             GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET------------
T ss_pred             ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeC------------
Confidence                                 0000 1345666666777666543                6667775            


Q ss_pred             CCccCCcccceEEEeecCC----------cceEEEEEC-CCC---CEEEEEcCCCeEEEEECCCCCce
Q 016982          186 GTSSDTKFGEQILQLDLSF----------SWAFGVKWS-PSG---NTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~----------~~v~~~~~s-p~~---~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                            .+++.+-.++...          .++. +... .+|   ..++.++.+|.++++|..+++.+
T Consensus       286 ------~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          286 ------DTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             ------TTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             ------CCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence                  5666655544321          1111 2222 467   46777889999999999887644

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=3.3e-05  Score=73.08  Aligned_cols=236  Identities=9%  Similarity=-0.019  Sum_probs=143.2

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEE-------e-----ccCCCceEEEEEcCCCCEEEEEeCCCeE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHV-------L-----QKHDQIVSGIDWSVRSNRIVTVSHDRNS   78 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (379)
                      ..|.++...++|.+. .|+..+-|.+++..+........       .     .-....|.++...++|.+ -.|+.++-|
T Consensus       258 ~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~Gl  335 (781)
T 3v9f_A          258 SYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGGI  335 (781)
T ss_dssp             CCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSCE
T ss_pred             ceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCeE
Confidence            568899988887654 45564678888987763322221       0     012457899999888864 445656668


Q ss_pred             EEEeccCCceeeeEEe-------ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe---ecCCcCEE
Q 016982           79 YVWNQEGSEWVPTLVI-------LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR---KRHDSSVT  148 (379)
Q Consensus        79 ~vw~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~---~~~~~~v~  148 (379)
                      ..++..+.........       .-....|.++...++|+ |.+|+.++-|..++..+..    ...+.   ......|.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~v~  410 (781)
T 3v9f_A          336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRV----AIYNKENRELLSNSVL  410 (781)
T ss_dssp             EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEE----EECC-----CCCSBEE
T ss_pred             EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCe----EEEccCCCCCCCcceE
Confidence            8898876643221100       00235688998888776 4566655667777765432    11110   12345788


Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee---cCCcceEEEEECCCCCEEEEEcCC
Q 016982          149 SVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD---LSFSWAFGVKWSPSGNTLAYVGHN  225 (379)
Q Consensus       149 ~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d  225 (379)
                      ++...+++++.+ |+.++.+..+|.                  .++ ....+.   .....|.++...++|.+.+. .. 
T Consensus       411 ~i~~d~~g~lWi-gt~~~Gl~~~~~------------------~~~-~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-  468 (781)
T 3v9f_A          411 CSLKDSEGNLWF-GTYLGNISYYNT------------------RLK-KFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-  468 (781)
T ss_dssp             EEEECTTSCEEE-EETTEEEEEECS------------------SSC-EEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-
T ss_pred             EEEECCCCCEEE-EeccCCEEEEcC------------------CCC-cEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-
Confidence            998887776554 666667888874                  222 222222   12456889999988876554 44 


Q ss_pred             CeEEEEECCCCCceeeeeeee-----cCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          226 SMIYFVDDVGPSPLAQNVAFR-----DLPLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       226 ~~i~v~d~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      +.|..||..+..-. ......     ...|.++...++|.+.+++.++.+..++..
T Consensus       469 ~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~  523 (781)
T 3v9f_A          469 AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD  523 (781)
T ss_dssp             TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT
T ss_pred             CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC
Confidence            56889997765321 111111     356888999999998888776667666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.74  E-value=7e-05  Score=63.31  Aligned_cols=233  Identities=12%  Similarity=0.078  Sum_probs=135.6

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~   88 (379)
                      .+..+|.+..+++ +|+.+. ...|+..++.+...  ...+.. ...+..++|++.++.|+.+. ..+.|..+++.+...
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~--~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEY--TLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCE--EEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCcccccccCc-eeEeec-ccceEEEeCCCCee--EEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence            3455676766644 444443 34688888776532  222333 34578999998777766554 567899999887653


Q ss_pred             eeeEEeecCCCceeEEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeCC-
Q 016982           89 VPTLVILRLNRAALCVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTSTD-  165 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d-  165 (379)
                      ....  .........+++.+.+. ++++-...+.|.+.+++...    ...+..........++++|.+..|. +-... 
T Consensus       108 ~~~~--~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~----~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~  181 (349)
T 3v64_C          108 EEVV--STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT  181 (349)
T ss_dssp             EEEE--CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECTTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred             eEEE--eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc----eEEEEeCCCCCcceEEEecCcCeEEEeccCCC
Confidence            2222  22234567889987554 44555557788888876554    2222133445678999999665444 43344 


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~  243 (379)
                      +.|..+++.                   +.....+ ...-.....++++|++..|..+. ..+.|..+|+...... ..+
T Consensus       182 ~~I~r~~~d-------------------G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~  241 (349)
T 3v64_C          182 PRIEASSMD-------------------GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVI  241 (349)
T ss_dssp             CEEEEEETT-------------------SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE
T ss_pred             CEEEEEeCC-------------------CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEE
Confidence            678777752                   2222222 12234568999999777666554 5678999998764322 222


Q ss_pred             eeecCCeeeEEEecCCcEEEEE-eCCCeEEEE
Q 016982          244 AFRDLPLRDVLFVSEKMVIGVG-FDCNPMVFA  274 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~  274 (379)
                      .........+++. ++.++.+. ..+.|..++
T Consensus       242 ~~~~~~P~giav~-~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          242 SQGLPHPFAITVF-EDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             CSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             eCCCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence            2223345677773 34444443 333444444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.73  E-value=2.9e-06  Score=79.61  Aligned_cols=157  Identities=13%  Similarity=0.127  Sum_probs=93.8

Q ss_pred             ceeEEEeC-CCCcEEEEEec-C----CeEEEEEecCC-ceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-----CeEE
Q 016982           12 CITCHAWS-PDHAMVAFCPN-N----NEVHIYKLIQE-KWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-----RNSY   79 (379)
Q Consensus        12 ~i~~~~~s-~~~~~l~~~~~-d----g~i~i~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~   79 (379)
                      .+...+|| |||++||.+.. +    ..|+++|+.++ +. ....+.   .....++|+|||+.|+....+     ..|.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            57789999 99999987644 2    25999999886 41 111111   123468999999888777654     2588


Q ss_pred             EEeccCCceeeeEEee-cCCCceeEEEECCCCCEEEEEeC---CCeEEEEEeecCCceeE-EEEEeecCCcCEEEEEEcC
Q 016982           80 VWNQEGSEWVPTLVIL-RLNRAALCVQWSPKENKFAVGSG---AKTVCICYYEQENNWWV-SKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p  154 (379)
                      ++++.+++........ ........+.|+|||++|+..+.   ...|.++|+..+... . .+.+..........+.|+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~-~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH-NTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC-CCEEESSCCCTTCCEEEEEET
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC-ceeEEeecCCCCceEEEeeee
Confidence            8888776422222212 22334567899999998887663   345777777654211 1 0223133445556666654


Q ss_pred             CCcEEEEeeCC--C--eEEEEec
Q 016982          155 NNVFLATTSTD--G--KCRVFST  173 (379)
Q Consensus       155 ~~~~l~~~~~d--~--~i~v~d~  173 (379)
                      .+.+++....+  +  .|..+++
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEET
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcC
Confidence            44444444443  3  4555553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.72  E-value=6.2e-06  Score=77.41  Aligned_cols=197  Identities=5%  Similarity=-0.046  Sum_probs=108.0

Q ss_pred             ceEEEEEc-CCCCEEEEEeC-CC----eEEEEeccCC-ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----eEE
Q 016982           56 IVSGIDWS-VRSNRIVTVSH-DR----NSYVWNQEGS-EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK-----TVC  123 (379)
Q Consensus        56 ~v~~~~~~-~~~~~l~~~~~-d~----~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~  123 (379)
                      .+...+|| |||++|+.+.. +|    .|+++|+.++ +..... +   ......+.|+|||+.|+....+.     .|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-V---SGTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-E---EEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-c---cCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            67889999 99998876543 22    4999999988 632211 1   12245789999999888877652     466


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---CCeEEEEeccccccccccccCCCccCCcccce-EEE
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ-ILQ  199 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~  199 (379)
                      ++++.++.... ...+..........+.|+|||++|+..+.   ...|.++|+..                ...+. +..
T Consensus       251 ~~~lgt~~~~~-~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~----------------~~~~~~~~~  313 (751)
T 2xe4_A          251 RHVMGKLQSED-VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK----------------GNAHNTLEI  313 (751)
T ss_dssp             EEETTSCGGGC-EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS----------------CTTCCCEEE
T ss_pred             EEECCCCchhc-EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC----------------CCCCceeEE
Confidence            66665543111 11221123345678899999998886553   34577777521                00111 122


Q ss_pred             e-ecCCcceEEEEECCCCCEEEEEcCC----CeEEEEECCCCCceeee-eeeecC--CeeeEEEecCCcEEE--EEeCCC
Q 016982          200 L-DLSFSWAFGVKWSPSGNTLAYVGHN----SMIYFVDDVGPSPLAQN-VAFRDL--PLRDVLFVSEKMVIG--VGFDCN  269 (379)
Q Consensus       200 ~-~~~~~~v~~~~~sp~~~~l~~~~~d----~~i~v~d~~~~~~~~~~-~~~~~~--~i~~~~~s~~~~~l~--~~~d~~  269 (379)
                      + ........++.|+.++.+++....+    ..|..+|+.++... +. +..+..  .+..+.+.  +..|+  ...++.
T Consensus       314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~  390 (751)
T 2xe4_A          314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW-SHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGL  390 (751)
T ss_dssp             SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC-CCEEECCCSSEEEEEEEEC--SSEEEEEEEETTE
T ss_pred             eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc-eeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCE
Confidence            2 2223444556655444444444443    36777787643211 22 222333  34444443  44443  445665


Q ss_pred             eEEEEec
Q 016982          270 PMVFAAD  276 (379)
Q Consensus       270 ~~i~~~~  276 (379)
                      ..++..+
T Consensus       391 ~~l~~~d  397 (751)
T 2xe4_A          391 TRIWTMM  397 (751)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5555543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.71  E-value=2.8e-05  Score=67.76  Aligned_cols=214  Identities=7%  Similarity=0.018  Sum_probs=114.6

Q ss_pred             ceeEEEeCCC--CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEecc
Q 016982           12 CITCHAWSPD--HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR-----NSYVWNQE   84 (379)
Q Consensus        12 ~i~~~~~s~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~   84 (379)
                      ....++|+|+  ...|..+...+.|+.++..++  . +..+.........++++++|+ |+.+...+     .+...+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--~-v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--Y-VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--E-EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC--E-EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence            4678999984  344544444488999998776  2 233333445678999999999 54444321     23333433


Q ss_pred             CCceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE-EEe
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL-ATT  162 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~  162 (379)
                      .+. ..... ...-.....++++| ++.++++-..++.|+.++..++..  ....+.......-..++|+|++++| ++-
T Consensus       216 ~~~-~~~~~-~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~--~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          216 SGF-TERLS-LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL--TEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             GTT-CCEEE-EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE--EEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CCe-ecccc-ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE--EEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            221 11111 11234567789999 666555555677888877765541  0122212222233579999999854 444


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEE-eecCCcceEEEEE---------CCCCCEEEEEcCCCeEEEEE
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ-LDLSFSWAFGVKW---------SPSGNTLAYVGHNSMIYFVD  232 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~---------sp~~~~l~~~~~d~~i~v~d  232 (379)
                      ...+.|+.++.......+.............+..-.. ....-.....+++         .++|.++++-...+.|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            5577888887521100000000000000000000000 0001123577899         77787777767778899998


Q ss_pred             C
Q 016982          233 D  233 (379)
Q Consensus       233 ~  233 (379)
                      .
T Consensus       372 ~  372 (433)
T 4hw6_A          372 P  372 (433)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.68  E-value=9.3e-05  Score=61.35  Aligned_cols=212  Identities=11%  Similarity=0.081  Sum_probs=116.8

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC--eE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK--TV  122 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v  122 (379)
                      +.+..+... .....++|+++++++++-..++.|..||..+.. ....   .....+..+++.++|+++++.....  .|
T Consensus        23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~---~~~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHA---TVEGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEE---ECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEE---eCCCCceeEEEcCCCcEEEEeccCCcceE
Confidence            455555433 456789999999866666678899999987642 2222   2345788999999999666554332  35


Q ss_pred             EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982          123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL  202 (379)
Q Consensus       123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (379)
                      ..++..++.   +..............++..+++..+++-..++.|.++|.............       .... .....
T Consensus        98 ~~~d~~~g~---~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~-------~~~~-~~~~~  166 (306)
T 2p4o_A           98 VSLVKSDGT---VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP-------MLAR-SNSES  166 (306)
T ss_dssp             EEEECTTSC---EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG-------GGSC-SSTTC
T ss_pred             EEEcCCCCe---EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC-------cccc-ccccC
Confidence            555555554   222221122223355555555555555556888888885210000000000       0000 00000


Q ss_pred             CCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCce--eeeeeeecCCeeeEEEecCCcEEEEEe-CCCeEEEEe
Q 016982          203 SFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPL--AQNVAFRDLPLRDVLFVSEKMVIGVGF-DCNPMVFAA  275 (379)
Q Consensus       203 ~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~-d~~~~i~~~  275 (379)
                      .-.....+  +|++++|+.+ ...+.|..||+......  ...+. .......++++++|+++++.. .+.|.+++.
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            11124455  7888766554 56789999998752111  11111 123467899999998777654 456666553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=0.00021  Score=67.64  Aligned_cols=235  Identities=10%  Similarity=-0.001  Sum_probs=142.4

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-----cCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-----KHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      ..|.++...++|.+.+ |+.+ -+.+||..++++.......     .....|.++...++|.+ ..|+..+-|.+++..+
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKL-WIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEE-EEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCE-EEEeCCCCeEEECCCC
Confidence            4688998888887655 4444 6889998776333221111     12356899998888754 4455545588899877


Q ss_pred             CceeeeEE-------e-----ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe---------ecCC
Q 016982           86 SEWVPTLV-------I-----LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR---------KRHD  144 (379)
Q Consensus        86 ~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~---------~~~~  144 (379)
                      +.......       .     .-....|.++...++|. |.+|+.++-|..++.....    ...+.         .-..
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~----~~~~~~~~~~~~~~~l~~  362 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT----FHTWSYSPTQMNESSLSN  362 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS----CEEEC----CCCSSCCSS
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc----ceeeccCccccccCCCCC
Confidence            65322211       0     01235688998888876 5566666678777765543    11110         1123


Q ss_pred             cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe----ecCCcceEEEEECCCCCEEE
Q 016982          145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL----DLSFSWAFGVKWSPSGNTLA  220 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l~  220 (379)
                      ..|.++...+++++. .|+.++-+..||..                  +. ....+    ......|.++...++|.+.+
T Consensus       363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~------------------~~-~~~~~~~~~~~~~~~v~~i~~d~~g~lWi  422 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLW-IGTDGGGINVFENG------------------KR-VAIYNKENRELLSNSVLCSLKDSEGNLWF  422 (781)
T ss_dssp             SCEEEEEECTTSCEE-EEEBSSCEEEEETT------------------EE-EEECC-----CCCSBEEEEEECTTSCEEE
T ss_pred             cceEEEEEcCCCCEE-EEeCCCcEEEEECC------------------CC-eEEEccCCCCCCCcceEEEEECCCCCEEE
Confidence            568999888777644 55656668888852                  11 11111    12245689999888887655


Q ss_pred             EEcCCCeEEEEECCCCCceeeeee---eecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          221 YVGHNSMIYFVDDVGPSPLAQNVA---FRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                       |..++.+..+|..+++ . ..+.   .....|.++...++|.+.++.. +.+..++...
T Consensus       423 -gt~~~Gl~~~~~~~~~-~-~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~  478 (781)
T 3v9f_A          423 -GTYLGNISYYNTRLKK-F-QIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLAS  478 (781)
T ss_dssp             -EETTEEEEEECSSSCE-E-EECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSS
T ss_pred             -EeccCCEEEEcCCCCc-E-EEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCC
Confidence             5666778899876543 1 2222   1245688888888888877665 6677776543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.65  E-value=0.0001  Score=63.25  Aligned_cols=231  Identities=12%  Similarity=0.085  Sum_probs=132.4

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~   90 (379)
                      .-+|.+..+. .+|+.+. ...|+.+++.+.....  .+. ....+..++|++.+..|+.+. ..+.|..+++.+.....
T Consensus        78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~--~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTL--LLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEE--EEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred             CCeECCcccc-ceeEeec-CccceeeccCCCcEEE--Eec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence            3445555553 3444443 3578888887653322  223 234578999998776666554 56789999988765322


Q ss_pred             eEEeecCCCceeEEEECCCCCEE-EEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CC-Ce
Q 016982           91 TLVILRLNRAALCVQWSPKENKF-AVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TD-GK  167 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d-~~  167 (379)
                      ..  .........+++.+.+..| ++-...+.|.+.+++....   ...+ .........++++|.+..|.... .. +.
T Consensus       153 ~~--~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~---~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~  226 (386)
T 3v65_B          153 VV--STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR---KVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPR  226 (386)
T ss_dssp             EE--CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC---EEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             EE--eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce---EEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence            22  2223455778888755544 4445567788777654431   2222 33345678999998765555443 33 67


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeeeeee
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      |..+++.                   +.....+ ...-.....|+++|++..|+.+ ...+.|..+|+...... ..+..
T Consensus       227 I~r~~~d-------------------G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~  286 (386)
T 3v65_B          227 IEASSMD-------------------GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQ  286 (386)
T ss_dssp             EEEEETT-------------------SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-EEECS
T ss_pred             EEEEeCC-------------------CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-EEEEC
Confidence            7777752                   2222222 2223457899999877666655 45678999998754322 22222


Q ss_pred             ecCCeeeEEEecCCcEEEEE-eCCCeEEEE
Q 016982          246 RDLPLRDVLFVSEKMVIGVG-FDCNPMVFA  274 (379)
Q Consensus       246 ~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~  274 (379)
                      .......+++. .+.++.+. ..+.|..++
T Consensus       287 ~~~~P~giav~-~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          287 GLPHPFAITVF-EDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             SCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEE-CCEEEEeeCCCCeEEEEE
Confidence            23345677773 34444443 334454444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.64  E-value=5e-05  Score=63.64  Aligned_cols=230  Identities=10%  Similarity=0.073  Sum_probs=129.6

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEec-CCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC-c
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLI-QEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS-E   87 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-~   87 (379)
                      ...+.++.|++ +..+++ +..+.|+. ..+ ...++.+.....+...+..+.+.+++..++.+ .++.|..- .+.+ .
T Consensus        79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred             CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCC
Confidence            34688999986 454554 45665443 222 22355543332334557788887777655554 45644321 2223 3


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeec-CCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQ-ENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                      +....  ......+..+.+.+++.+++++. ++.+..-+ +. +..|....   ......+..+.+.++++.++ .+.+|
T Consensus       154 W~~~~--~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~-d~gG~tW~~~~---~~~~~~~~~~~~~~~g~~~~-~~~~G  225 (327)
T 2xbg_A          154 WQALV--QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTW-EPGQTAWEPHN---RTTSRRLHNMGFTPDGRLWM-IVNGG  225 (327)
T ss_dssp             EEEEE--CSCCCCEEEEEECTTSCEEEEET-TSSEEEEE-CTTCSSCEEEE---CCSSSCEEEEEECTTSCEEE-EETTT
T ss_pred             CEEee--cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEe-CCCCCceeECC---CCCCCccceeEECCCCCEEE-EeCCc
Confidence            33322  34456788999999888776664 45543321 22 34333221   34556788999999887665 45577


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEee----cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD----LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      .+++.+.                  ..++....+.    .....+..+++.|++..++++. ++.+ ++....+.. -..
T Consensus       226 ~~~~s~~------------------D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t-W~~  284 (327)
T 2xbg_A          226 KIAFSDP------------------DNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT-WQQ  284 (327)
T ss_dssp             EEEEEET------------------TEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS-CEE
T ss_pred             eEEEecC------------------CCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc-cEE
Confidence            7776631                  0011111111    1123478899998888777654 6666 344344432 232


Q ss_pred             eee---ecCCeeeEEEecCCcEEEEEeCCCeEEE
Q 016982          243 VAF---RDLPLRDVLFVSEKMVIGVGFDCNPMVF  273 (379)
Q Consensus       243 ~~~---~~~~i~~~~~s~~~~~l~~~~d~~~~i~  273 (379)
                      +..   ....+.++.|.+++.+++++.++.+.-+
T Consensus       285 ~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~  318 (327)
T 2xbg_A          285 DVDVKKVPSNFYKILFFSPDQGFILGQKGILLRY  318 (327)
T ss_dssp             CGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEE
T ss_pred             cCccCCCCCCeEEEEEECCCceEEEcCCceEEEE
Confidence            321   2346788999888888888888865433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.63  E-value=5.6e-05  Score=63.96  Aligned_cols=249  Identities=11%  Similarity=0.039  Sum_probs=128.0

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec---cCCCceEEEEEcCC---CCEEEEEeC----C----C
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ---KHDQIVSGIDWSVR---SNRIVTVSH----D----R   76 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----~   76 (379)
                      .....++|.|+|+++++ ..+|.|++++ .+++ +.+..+.   ........|+++|+   +..|+.+..    +    .
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            45788999999985555 5669999997 3442 3333322   12345789999997   445544432    2    5


Q ss_pred             eEEEEeccCC--ce---eeeEE-ee-cCCCceeEEEECCCCCEEEEEeCC-------------CeEEEEEeecCC----c
Q 016982           77 NSYVWNQEGS--EW---VPTLV-IL-RLNRAALCVQWSPKENKFAVGSGA-------------KTVCICYYEQEN----N  132 (379)
Q Consensus        77 ~i~vw~~~~~--~~---~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~d-------------~~v~i~~~~~~~----~  132 (379)
                      .|..|+....  ..   ...+. .. ........+.|.|||.++++.+..             |.|.-++.+..-    .
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777777654  11   11111 11 111234679999999876664421             334333322110    0


Q ss_pred             eeEEEEEeecCCcCEEEEEEcC-CCcEEEEeeCCC---eEEEEeccccccccccccCCC-ccCCcccceEEEeecCCcce
Q 016982          133 WWVSKLIRKRHDSSVTSVAWHP-NNVFLATTSTDG---KCRVFSTFIKGVDIKEKKEGT-SSDTKFGEQILQLDLSFSWA  207 (379)
Q Consensus       133 ~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v  207 (379)
                      ....+.+..++.. ...++|+| +++++++-....   .|.+...   ....-.+.... ........++..+.......
T Consensus       186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~---G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap  261 (354)
T 3a9g_A          186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILK---GGNYGWPLATGKAGRGEFVDPVIDTGSETWAP  261 (354)
T ss_dssp             STTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECT---TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred             CCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecC---CCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence            0001222234443 35799999 566555433222   2333211   00000000000 00000112233331123456


Q ss_pred             EEEEEC-------CCCCEEEEEcCCCeEEEEECCCCCcee--eee-eeecCCeeeEEEecCCcEEEEEe
Q 016982          208 FGVKWS-------PSGNTLAYVGHNSMIYFVDDVGPSPLA--QNV-AFRDLPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       208 ~~~~~s-------p~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~-~~~~~~i~~~~~s~~~~~l~~~~  266 (379)
                      ..++|.       .+|.++++.-..+.|...++.......  ..+ ......+..+++.|||.++++..
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            788884       467777766677889888877542221  122 12235688999999998777654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.62  E-value=3.1e-06  Score=78.23  Aligned_cols=230  Identities=10%  Similarity=0.009  Sum_probs=127.4

Q ss_pred             EEEeCCCCcEEEEEec-CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CC-----CeEEEEeccCCc
Q 016982           15 CHAWSPDHAMVAFCPN-NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HD-----RNSYVWNQEGSE   87 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~vw~~~~~~   87 (379)
                      ++++.++++++++|+. +..+.+||..+++|..+..+..... -.+++..++++.++.|+ .+     ..+.+||..+++
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            4677789999999984 4589999999987776655443222 23556667899888888 34     469999999887


Q ss_pred             eeeeEEe--ecCCCceeEEEECCCCCEEEEEeCCC---------eEEEEEeecCCceeEEEEEeec------CCcCEEEE
Q 016982           88 WVPTLVI--LRLNRAALCVQWSPKENKFAVGSGAK---------TVCICYYEQENNWWVSKLIRKR------HDSSVTSV  150 (379)
Q Consensus        88 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~---------~v~i~~~~~~~~~~~~~~~~~~------~~~~v~~~  150 (379)
                      +...-..  ......-....+..++..++.++.++         .+..||..+..-+...... ..      ....-.++
T Consensus       326 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~-~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR-QSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEEC-EETTEECCCCBTCEEE
T ss_pred             ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcc-ccccccCCCCCCCceE
Confidence            5442000  00000000112334556666665443         4567777665422111111 11      01122444


Q ss_pred             EEcC-CCcEEEEeeCCC-----------eEEEEeccccccccccccCCCccCCcccceEEEe--ecCCc-ceEEEEECCC
Q 016982          151 AWHP-NNVFLATTSTDG-----------KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFS-WAFGVKWSPS  215 (379)
Q Consensus       151 ~~~p-~~~~l~~~~~d~-----------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~v~~~~~sp~  215 (379)
                      .|.. ++++++.|+.++           .+.+||..                  +.......  ..... .-.+++..|+
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~------------------~~~W~~~~~~~mp~~R~~~~~~~l~~  466 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG------------------TSPNTVFASNGLYFARTFHTSVVLPD  466 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT------------------SCCEEEECTTCCSSCCBSCEEEECTT
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC------------------CCCeeEEccCCCCCCcccCCeEECCC
Confidence            4443 678888887532           56666642                  11211111  11111 1234566789


Q ss_pred             CCEEEEEcCC-----------CeEEEEECCCCCceeeeeee---ecCCeeeEEEecCCcEEEEEe
Q 016982          216 GNTLAYVGHN-----------SMIYFVDDVGPSPLAQNVAF---RDLPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       216 ~~~l~~~~~d-----------~~i~v~d~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~  266 (379)
                      +++++.|+.+           ..+.+||..+.+  ...+..   .........+.++|++++.|.
T Consensus       467 g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~--W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG  529 (656)
T 1k3i_A          467 GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQNPNSIVRVYHSISLLLPDGRVFNGGG  529 (656)
T ss_dssp             SCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred             CCEEEECCcccCcCcCCCCcccceEEEcCCCCc--eeecCCCCCccccccHhhcCCCcEEEecCC
Confidence            9999998754           468899986643  122211   111122345668999888655

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.60  E-value=0.00013  Score=61.67  Aligned_cols=247  Identities=10%  Similarity=0.066  Sum_probs=125.8

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec---cCCCceEEEEEcCC---CCEEEEEeC-C-----CeE
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ---KHDQIVSGIDWSVR---SNRIVTVSH-D-----RNS   78 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~i   78 (379)
                      .....++|.|+|+++++ ..+|.|++++  +++...+..+.   ........|+|+|+   +..|+.+.. .     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45679999999986655 4669999998  44333333332   12346789999998   555544433 2     568


Q ss_pred             EEEeccCCce---eeeEEeec----CCCceeEEEECCCCCEEEEEeCC-------------CeEEEEEeecCC----ce-
Q 016982           79 YVWNQEGSEW---VPTLVILR----LNRAALCVQWSPKENKFAVGSGA-------------KTVCICYYEQEN----NW-  133 (379)
Q Consensus        79 ~vw~~~~~~~---~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------~~v~i~~~~~~~----~~-  133 (379)
                      ..++...+..   ...+....    .......++|.|+|.++++.+..             +.|.-++.+..-    .. 
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            8888765421   11121111    11234689999999766664321             344333332200    00 


Q ss_pred             ----eEEEEEeecCCcCEEEEEEcC-CCcEEEEeeCCCe--------EEEEeccccccccccccCCC-ccCCcccceEEE
Q 016982          134 ----WVSKLIRKRHDSSVTSVAWHP-NNVFLATTSTDGK--------CRVFSTFIKGVDIKEKKEGT-SSDTKFGEQILQ  199 (379)
Q Consensus       134 ----~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~--------i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~  199 (379)
                          ...+.+..++.. ...++|+| +++++++-.....        |.+...   ....-.+.... ........++..
T Consensus       188 ~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~---G~nyGwp~~~g~~~~~~~~~p~~~  263 (352)
T 2ism_A          188 GRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP---GGNYGWPRVVGRGNDPRYRDPLYF  263 (352)
T ss_dssp             TCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEEECC------CCCEEEEECT---TCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred             CCCCCCccEEEEcCCC-cccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc---CCcCCCCcccCCCCCCCCcCCeEe
Confidence                001122133332 46789999 5665555333222        222211   00000000000 000001123333


Q ss_pred             eecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce-----eeeeeeecCCeeeEEEecCCcEEEEEe
Q 016982          200 LDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL-----AQNVAFRDLPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       200 ~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~  266 (379)
                      +.. ......++| .+|.++++.-..+.|...++......     ...+......+..+++.|||.++++..
T Consensus       264 ~~~-~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          264 WPQ-GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CTT-CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             cCC-CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            322 234567777 46776666666778888876644321     111212235688999999998777553

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.57  E-value=1.4e-05  Score=73.88  Aligned_cols=184  Identities=6%  Similarity=-0.021  Sum_probs=106.8

Q ss_pred             EEEEcCCCCEEEEEeCCC-------------------eEEEEeccCCceeeeEEeecCC-------CceeEEEECCCCC-
Q 016982           59 GIDWSVRSNRIVTVSHDR-------------------NSYVWNQEGSEWVPTLVILRLN-------RAALCVQWSPKEN-  111 (379)
Q Consensus        59 ~~~~~~~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~-  111 (379)
                      .+++.|+...++.++.++                   .|..+|..+++.+-.+....|.       .+.....+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            468888888888887665                   3999999999866666543232       2222222333565 


Q ss_pred             --EEEEEeCCCeEEEEEeecCCceeEEE--------EEee-cCCcCE------------------------EEEEEcCCC
Q 016982          112 --KFAVGSGAKTVCICYYEQENNWWVSK--------LIRK-RHDSSV------------------------TSVAWHPNN  156 (379)
Q Consensus       112 --~l~~~~~d~~v~i~~~~~~~~~~~~~--------~~~~-~~~~~v------------------------~~~~~~p~~  156 (379)
                        .++.++.+|.++++|..+++.....+        .+ . ....++                        ..++++|+.
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~-d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV-DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE-CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEECCCCEEEEEECCCCCEecccccccccccccc-ccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence              68888999999999988877321100        00 0 000000                        125677766


Q ss_pred             cEEEEee------------------------------------CCCeEEEEeccccccccccccCCCccCCcccceEEEe
Q 016982          157 VFLATTS------------------------------------TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL  200 (379)
Q Consensus       157 ~~l~~~~------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (379)
                      .++....                                    .+|.|..||+                  .+++.+-+.
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~------------------~tG~~~W~~  454 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDP------------------VKQKAAWKV  454 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEET------------------TTTEEEEEE
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeC------------------CCCcEEEEc
Confidence            5554422                                    1245666664                  455555444


Q ss_pred             ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecC-CeeeEEEecCCc-EEE
Q 016982          201 DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDL-PLRDVLFVSEKM-VIG  263 (379)
Q Consensus       201 ~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~i~~~~~s~~~~-~l~  263 (379)
                      .... ......+...+.++++++.|+.+++||..+++.+ ..+..... .-.-+.+..+|+ +++
T Consensus       455 ~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l-~~~~~~~~~~~~p~~~~~~G~~yva  517 (668)
T 1kv9_A          455 PYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL-WQFEAQSGIVAAPMTFELAGRQYVA  517 (668)
T ss_dssp             EESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhh-eEecCCCCcccCceEEEECCEEEEE
Confidence            3321 2222334446788889999999999999988754 44443221 112345566777 444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.57  E-value=0.00031  Score=63.68  Aligned_cols=106  Identities=7%  Similarity=-0.005  Sum_probs=59.6

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCCc---------eEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQI---------VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~   93 (379)
                      ..+++++.++.|.-+|..++  +.+..+......         -..+++  .+..++.++.|+.|.-+|..+++.+-...
T Consensus        69 g~vyv~~~~~~v~AlD~~tG--~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTG--KRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSC--CEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CEEEEEcCCCCEEEEECCCC--cEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            34555555455999999887  344444322111         012222  25578888899999999999998655544


Q ss_pred             eecCCC--cee-EEEECC---CCC-EEEEEeC------CCeEEEEEeecCCc
Q 016982           94 ILRLNR--AAL-CVQWSP---KEN-KFAVGSG------AKTVCICYYEQENN  132 (379)
Q Consensus        94 ~~~~~~--~v~-~~~~~~---~~~-~l~~~~~------d~~v~i~~~~~~~~  132 (379)
                      ...+..  .+. ......   +++ .+++++.      ++.|.-+|..+++.
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            322110  111 111111   233 5556542      68888888887764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.56  E-value=2.5e-05  Score=70.66  Aligned_cols=184  Identities=10%  Similarity=-0.028  Sum_probs=102.2

Q ss_pred             EEEcCCCCEEEEEeCC----------------CeEEEEeccCCceeeeEEeecCCC----ceeE---EEECCCCC---EE
Q 016982           60 IDWSVRSNRIVTVSHD----------------RNSYVWNQEGSEWVPTLVILRLNR----AALC---VQWSPKEN---KF  113 (379)
Q Consensus        60 ~~~~~~~~~l~~~~~d----------------~~i~vw~~~~~~~~~~~~~~~~~~----~v~~---~~~~~~~~---~l  113 (379)
                      +++.++...++.+..+                +.|..+|..+++.+-.+....|..    .+..   +...++|+   .+
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence            5566666677666532                359999999998666554332211    1111   22223664   56


Q ss_pred             EEEeCCCeEEEEEeecCCceeEEEEEeecC------------CcCE--------------------------EEEEEcCC
Q 016982          114 AVGSGAKTVCICYYEQENNWWVSKLIRKRH------------DSSV--------------------------TSVAWHPN  155 (379)
Q Consensus       114 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~------------~~~v--------------------------~~~~~~p~  155 (379)
                      +.++.+|.++++|..+++.....+   ...            ..++                          ..++++|+
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~w~~~---~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLIVAEK---VDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEE---SSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEeCCCcEEEEEECCCCCEEeeec---ccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence            778889999999888776322111   111            0111                          23577887


Q ss_pred             CcEEEEeeC-------------------------------------CCeEEEEeccccccccccccCCCccCCcccceEE
Q 016982          156 NVFLATTST-------------------------------------DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL  198 (379)
Q Consensus       156 ~~~l~~~~~-------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
                      ..++++...                                     ++.+..||+                  .+++.+-
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~------------------~tG~~~W  458 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL------------------TTGKAKW  458 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT------------------TTCCEEE
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC------------------CCCCEEE
Confidence            777766543                                     245555554                  4555544


Q ss_pred             EeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeec-CCeeeEEEecCCcEEEEEe
Q 016982          199 QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD-LPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       199 ~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~  266 (379)
                      ++... ..+....+...+..++.++.|+.|+.+|..+++.+ ..+.... ..-.-+.+..+|+.+++..
T Consensus       459 ~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          459 TKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL-WNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             EEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE-EEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence            44321 11222222234667778899999999999998754 4444222 1112244556777655433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.56  E-value=0.00018  Score=60.73  Aligned_cols=200  Identities=9%  Similarity=-0.009  Sum_probs=117.8

Q ss_pred             cceeEEEeCCCCcEEE-EEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEE-EeCCCeEEEEeccCCce
Q 016982           11 QCITCHAWSPDHAMVA-FCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT-VSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~vw~~~~~~~   88 (379)
                      ..+.+++|++....|. +-...+.|+.+++.+...+.  .+.........+++.+.+..|+. -...+.|.+.+++....
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            3467889987655554 44456889889887753222  22222234568899876655544 44567899999876542


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeC-C-CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eCC
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSG-A-KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-STD  165 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d  165 (379)
                      . .+ ....-.....+++.|.+..|+.... . +.|..++++...    ...+..........++++|++..|..+ ...
T Consensus       151 ~-~l-~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          151 K-VL-LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             E-EE-ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             E-EE-EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC----cEEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence            2 22 1223356789999996665555543 4 677777665543    222212233456899999866555544 456


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEE-eecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ-LDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      +.|..+|+.                   +..... +.........+++ ..+.++++-...+.|..++..+++.
T Consensus       225 ~~I~~~~~d-------------------G~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  278 (349)
T 3v64_C          225 HVIERANLD-------------------GSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  278 (349)
T ss_dssp             TEEEEEETT-------------------SCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CEEEEEeCC-------------------CCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCc
Confidence            788888862                   111111 1222334567777 3444455555677888888555543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.55  E-value=0.00019  Score=61.54  Aligned_cols=201  Identities=8%  Similarity=-0.026  Sum_probs=119.0

Q ss_pred             cceeEEEeCCCCcEEE-EEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCeEEEEeccCCce
Q 016982           11 QCITCHAWSPDHAMVA-FCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRNSYVWNQEGSEW   88 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~   88 (379)
                      ..+..++|++.+..|. +-...+.|+.+++.+..  ....+.........+++.+.+..|+.+ ...+.|.+.++.....
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~--~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSN--VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC--EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC--cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            4577899997555444 44457889999988763  222222222345678888766555444 4567888888876542


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeC-C-CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeCC
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSG-A-KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTSTD  165 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d  165 (379)
                      . .+ ....-.....+++.|.+..|+.... . +.|..++++...    ...+..........++++|++..|. +-+..
T Consensus       194 ~-~l-~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          194 K-VL-LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             E-EE-ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             E-Ee-ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC----cEEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence            2 22 1223356789999997666665544 3 567776665543    2222123344578999998665554 44456


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      +.|..+|+..                  ......+.........+++ ..+.++++-...+.|..+|..+++.
T Consensus       268 ~~I~~~d~dG------------------~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          268 HVIERANLDG------------------SHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             TEEEEECTTS------------------CSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             CEEEEEeCCC------------------CeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            7888888621                  1111112222334567777 3445555556678888888655543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=0.0004  Score=60.80  Aligned_cols=159  Identities=8%  Similarity=0.101  Sum_probs=94.9

Q ss_pred             ceeEEEeCC-CCcEEEEE-ecCCeEEEEEecCCceEEEEEecc-CCCceEEEEE-------cCCCCEEEEEeCCC-----
Q 016982           12 CITCHAWSP-DHAMVAFC-PNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDW-------SVRSNRIVTVSHDR-----   76 (379)
Q Consensus        12 ~i~~~~~s~-~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~l~~~~~d~-----   76 (379)
                      ....|+|+| +...|.++ ...+.|++.|++++....+..... .......++|       +++++.|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467899998 34444444 444678889988863333222111 1235789999       99999776666543     


Q ss_pred             --eEEEEeccC-Ccee-----eeEEeecCCCceeEEEECCC-CCEEEEEeCCCeEEEEEee-------cCCce-----e-
Q 016982           77 --NSYVWNQEG-SEWV-----PTLVILRLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYE-------QENNW-----W-  134 (379)
Q Consensus        77 --~i~vw~~~~-~~~~-----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~-------~~~~~-----~-  134 (379)
                        .|.+.+... +.+.     ..+.  . -.....++++|+ +.++++-..++.|..+|+.       ++..+     . 
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~--~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIA--A-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEE--E-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             CceEEEEecCCCCceeecccceeec--c-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence              255665333 2332     1221  1 234567889995 5555556668889999987       44321     0 


Q ss_pred             ---EEEEEeecCCcCEEEEEEcCCCcE-EEEeeCCCeEEEEec
Q 016982          135 ---VSKLIRKRHDSSVTSVAWHPNNVF-LATTSTDGKCRVFST  173 (379)
Q Consensus       135 ---~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~d~~i~v~d~  173 (379)
                         ....+..........++|+|+++. +++-+....|+.++.
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence               112221223344679999999985 444456778888765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.48  E-value=0.00011  Score=60.29  Aligned_cols=163  Identities=13%  Similarity=0.086  Sum_probs=106.4

Q ss_pred             CCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeEEeec----C--CCceeEEEE---CCCCCEEEEEe------
Q 016982           54 DQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILR----L--NRAALCVQW---SPKENKFAVGS------  117 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~------  117 (379)
                      ...-.+++|.+....|..++ ..++|..|+...+..... .+..    .  ...+..+.|   .|+++++++..      
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            33445789988666666665 789999999986643332 2211    0  124689999   68877777543      


Q ss_pred             -------CCCeEEEEEee---cCCceeEEEEEe--ec-------CCcCEEEEEEcCCCcEEEEeeCC-CeEEEEeccccc
Q 016982          118 -------GAKTVCICYYE---QENNWWVSKLIR--KR-------HDSSVTSVAWHPNNVFLATTSTD-GKCRVFSTFIKG  177 (379)
Q Consensus       118 -------~d~~v~i~~~~---~~~~~~~~~~~~--~~-------~~~~v~~~~~~p~~~~l~~~~~d-~~i~v~d~~~~~  177 (379)
                             .+..|..||+.   +++.......-.  .+       -......++..++|+..++++.. +.|...+.    
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p----  166 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA----  166 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT----
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC----
Confidence                   25778889988   555322111100  01       12358899999999999998888 88777764    


Q ss_pred             cccccccCCCccCCcccceEEEee------cCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Q 016982          178 VDIKEKKEGTSSDTKFGEQILQLD------LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~  236 (379)
                                     .++.+..+.      ......+.++++|+|+.|++....+.|..+|+...
T Consensus       167 ---------------dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          167 ---------------DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             ---------------TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             ---------------CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence                           232222221      11223678999999999988877999999998854

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.47  E-value=0.00038  Score=57.93  Aligned_cols=205  Identities=9%  Similarity=-0.081  Sum_probs=119.0

Q ss_pred             cceeEEEeCCCCcEEE-EEecCCeEEEEEecCCc--eEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCCeEEEEeccCC
Q 016982           11 QCITCHAWSPDHAMVA-FCPNNNEVHIYKLIQEK--WEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDRNSYVWNQEGS   86 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~   86 (379)
                      ..+.+++|+++++.|. +-..++.|+.+++.+..  ......+...-.....+++.+.+..|+ +-...+.|.+.++...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            4567899998665554 44456899999987610  011222322223457889987665554 4456788999998765


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCC--CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-e
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA--KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-S  163 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~  163 (379)
                      ......  ...-.....+++.|.+..|+.+...  +.|..++++...    .+.+....-.....++++|++..|..+ .
T Consensus       110 ~~~~~~--~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~----~~~~~~~~~~~P~gla~d~~~~~lY~~D~  183 (316)
T 1ijq_A          110 KRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVDS  183 (316)
T ss_dssp             SEEEEE--ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             ceEEEE--ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC----eEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence            432222  2233567899999976666555543  577776665433    222212334567899999876655544 4


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      ..+.|..+|+..                ...+.+............+++. .+.++++-...+.|..++..+++.
T Consensus       184 ~~~~I~~~d~dg----------------~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~  241 (316)
T 1ijq_A          184 KLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  241 (316)
T ss_dssp             TTTEEEEEETTS----------------CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             CCCeEEEEecCC----------------CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence            567899998621                0111111111112335677775 355555555678899998766553

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.45  E-value=0.00044  Score=57.50  Aligned_cols=222  Identities=17%  Similarity=0.100  Sum_probs=127.3

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCC---ceeeeEEeecCCC
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGS---EWVPTLVILRLNR   99 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~---~~~~~~~~~~~~~   99 (379)
                      +|+.+.. ..|+..++.+.+..  ..+. .......++|++.++.|+.+. .++.|..+++.+.   .....+ ....-.
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~--~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-~~~~~~   77 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYT--SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-ISRDIQ   77 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCE--EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECSSCS
T ss_pred             EEEEECC-CeEEEEECCCcceE--ehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-EeCCCC
Confidence            4555544 57899998876332  2333 234578999998776666555 4588999998761   211122 112224


Q ss_pred             ceeEEEECCCCCEE-EEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-C-CeEEEEecccc
Q 016982          100 AALCVQWSPKENKF-AVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-D-GKCRVFSTFIK  176 (379)
Q Consensus       100 ~v~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d-~~i~v~d~~~~  176 (379)
                      ....+++.+.+..| ++-...+.|.+++++...   ....+ .........++++|.+..|..... . +.|..+++.  
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~-~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--  151 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--  151 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc---eEEEE-ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--
Confidence            56788998755444 444567889998876544   22222 333456789999996655544443 2 677777752  


Q ss_pred             ccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeee--ecCCeee
Q 016982          177 GVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAF--RDLPLRD  252 (379)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~  252 (379)
                                       +.....+ ...-.....++++|++..|+.+. ..+.|..+|+...... .....  .......
T Consensus       152 -----------------G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~~~~P~g  213 (316)
T 1ijq_A          152 -----------------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFS  213 (316)
T ss_dssp             -----------------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEE
T ss_pred             -----------------CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCccCCcEE
Confidence                             2222222 12234578999999877766654 5679999998754321 12221  1233567


Q ss_pred             EEEecCCcEEEEE-eCCCeEEEEe
Q 016982          253 VLFVSEKMVIGVG-FDCNPMVFAA  275 (379)
Q Consensus       253 ~~~s~~~~~l~~~-~d~~~~i~~~  275 (379)
                      +++. .+.++.+. ..+.|..++.
T Consensus       214 iav~-~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          214 LAVF-EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEEET
T ss_pred             EEEE-CCEEEEEECCCCeEEEEeC
Confidence            7774 34444443 3344555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.42  E-value=0.00051  Score=57.11  Aligned_cols=225  Identities=9%  Similarity=0.016  Sum_probs=128.3

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeEEeecCCCcee
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILRLNRAAL  102 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~v~  102 (379)
                      +|+.+. ...|+..++.+........+.+ .....+++|.+.++.|+.+. ..+.|..+++.+........ ...-....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-~~~l~~p~   82 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-VSGLLSPD   82 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-EECCSCCC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-cCCCCCcc
Confidence            444443 3578999988652111111221 23567899998766665554 56789999987763212221 22224567


Q ss_pred             EEEECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee--CCCeEEEEeccccccc
Q 016982          103 CVQWSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS--TDGKCRVFSTFIKGVD  179 (379)
Q Consensus       103 ~~~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~i~v~d~~~~~~~  179 (379)
                      .+++.+.+ +++++-...+.|.+++++...    .+.+..........+++.|.+..|....  ..+.|...++.     
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~----~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-----  153 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSL----RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-----  153 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-----
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCc----EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-----
Confidence            88888744 444554557789888876544    2222134445678999998765555544  35677777752     


Q ss_pred             cccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          180 IKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                                    +.....+ ...-...+.++++|++..|+.+. ..+.|..+|+...... ............+++..
T Consensus       154 --------------G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~glav~~  218 (318)
T 3sov_A          154 --------------GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFALTLFE  218 (318)
T ss_dssp             --------------SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEEEEEET
T ss_pred             --------------CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceEEEEeC
Confidence                          2222222 12234568999999777666654 5678999998754322 22222234456777754


Q ss_pred             CCcEEEEEeCCCeEEEEe
Q 016982          258 EKMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       258 ~~~~l~~~~d~~~~i~~~  275 (379)
                      ++-+++-...+.|..++.
T Consensus       219 ~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          219 DILYWTDWSTHSILACNK  236 (318)
T ss_dssp             TEEEEEETTTTEEEEEET
T ss_pred             CEEEEEecCCCeEEEEEC
Confidence            322333333445555554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.42  E-value=8.1e-05  Score=67.45  Aligned_cols=72  Identities=7%  Similarity=-0.085  Sum_probs=48.3

Q ss_pred             EEEcCCCCEEEEEeCC----------------CeEEEEeccCCceeeeEEeecCCC--------ceeEEEEC-CCC---C
Q 016982           60 IDWSVRSNRIVTVSHD----------------RNSYVWNQEGSEWVPTLVILRLNR--------AALCVQWS-PKE---N  111 (379)
Q Consensus        60 ~~~~~~~~~l~~~~~d----------------~~i~vw~~~~~~~~~~~~~~~~~~--------~v~~~~~~-~~~---~  111 (379)
                      +++.++...++.+..+                +.|..+|.++++.+-.+....|..        ++. +... .+|   .
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~  324 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK  324 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence            4566677777777655                379999999998766665443321        111 2222 467   4


Q ss_pred             EEEEEeCCCeEEEEEeecCCc
Q 016982          112 KFAVGSGAKTVCICYYEQENN  132 (379)
Q Consensus       112 ~l~~~~~d~~v~i~~~~~~~~  132 (379)
                      .++.++.+|.++++|.++++.
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEECCCcEEEEEECCCCCE
Confidence            677788999999999888774

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.40  E-value=0.00017  Score=65.31  Aligned_cols=72  Identities=8%  Similarity=-0.007  Sum_probs=47.5

Q ss_pred             EEEcCCCCEEEEEeC--------------------C----CeEEEEeccCCceeeeEEeecCC--------CceeEEEEC
Q 016982           60 IDWSVRSNRIVTVSH--------------------D----RNSYVWNQEGSEWVPTLVILRLN--------RAALCVQWS  107 (379)
Q Consensus        60 ~~~~~~~~~l~~~~~--------------------d----~~i~vw~~~~~~~~~~~~~~~~~--------~~v~~~~~~  107 (379)
                      +++.|+...++.+..                    |    +.|..+|..+++.+-.+....|.        .++. +...
T Consensus       251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~  329 (582)
T 1flg_A          251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYK  329 (582)
T ss_dssp             CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEE
T ss_pred             ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eeee
Confidence            456677777776653                    2    57999999999876665543332        1111 1221


Q ss_pred             -CCCC---EEEEEeCCCeEEEEEeecCCc
Q 016982          108 -PKEN---KFAVGSGAKTVCICYYEQENN  132 (379)
Q Consensus       108 -~~~~---~l~~~~~d~~v~i~~~~~~~~  132 (379)
                       .+|+   .++.++.+|.++++|..+++.
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  358 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSNGKL  358 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence             4664   678889999999999887763

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.38  E-value=0.00084  Score=57.83  Aligned_cols=222  Identities=18%  Similarity=0.087  Sum_probs=128.2

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCc--eeeeEEeecCCCc
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSE--WVPTLVILRLNRA  100 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~--~~~~~~~~~~~~~  100 (379)
                      +|+.+. ...|+..++.......+  +. ....+..++|++.+..|+.+. ..+.|+.+++....  .............
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~--~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~  160 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  160 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEE--EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred             eeEEec-cceeEEEccCCcceeEe--cc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence            454443 46888888887633332  22 345678999999777776665 56788888887521  0011111223456


Q ss_pred             eeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC--CCeEEEEeccccc
Q 016982          101 ALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST--DGKCRVFSTFIKG  177 (379)
Q Consensus       101 v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--d~~i~v~d~~~~~  177 (379)
                      ...+++.+. ++++++-...+.|.+.+++...   ....+ .........++++|.+..|.....  .+.|...++.   
T Consensus       161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d---  233 (400)
T 3p5b_L          161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---  233 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEECTTTCS---EEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT---
T ss_pred             cccEEEEecCCceEEEECCCCeEEEEeCCCCc---eEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC---
Confidence            788999884 4445555557888887776554   22233 334456789999996655554442  3677777752   


Q ss_pred             cccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeee--ecCCeeeE
Q 016982          178 VDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAF--RDLPLRDV  253 (379)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~~  253 (379)
                                      +.....+ ...-.....|+++|++..|+.+. ..+.|..+|+...... .....  ......++
T Consensus       234 ----------------G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~l~~P~gl  296 (400)
T 3p5b_L          234 ----------------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL  296 (400)
T ss_dssp             ----------------SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEECSSTTSSEEEE
T ss_pred             ----------------CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeCCCCCCCCEEE
Confidence                            2222222 22234578999999877777664 5678999998764422 22221  12234566


Q ss_pred             EEecCCcEEE-EEeCCCeEEEE
Q 016982          254 LFVSEKMVIG-VGFDCNPMVFA  274 (379)
Q Consensus       254 ~~s~~~~~l~-~~~d~~~~i~~  274 (379)
                      ++.. +.++. -...+.|..++
T Consensus       297 ~v~~-~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          297 AVFE-DKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEET-TEEEEEESSSCSEEEEE
T ss_pred             EEeC-CEEEEecCCCCeEEEEE
Confidence            6633 33333 33344555555

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.38  E-value=0.00093  Score=58.16  Aligned_cols=153  Identities=13%  Similarity=0.167  Sum_probs=94.6

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CC----eEEEEEeecC
Q 016982           57 VSGIDWSV-RSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AK----TVCICYYEQE  130 (379)
Q Consensus        57 v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~v~i~~~~~~  130 (379)
                      ...|+++| ++..|+.+...+.|+.+|+.++.....   .........++|+++++.|+++.. ++    .+..++ ..+
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~---~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g  214 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV---YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RES  214 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE---ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE---ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCC
Confidence            46889998 455666666557899999987763332   224456889999999996666654 22    233333 222


Q ss_pred             CceeEEEEEeecCCcCEEEEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccce--EEEeecCCcce
Q 016982          131 NNWWVSKLIRKRHDSSVTSVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ--ILQLDLSFSWA  207 (379)
Q Consensus       131 ~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v  207 (379)
                      ... ....+ . .......++++| ++.++++-..++.|..++.                  .....  +..... ....
T Consensus       215 ~~~-~~~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~------------------~~~~~~~~~~~~~-~~~P  272 (430)
T 3tc9_A          215 GFK-VITEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF------------------TTQETTPLFTIQD-SGWE  272 (430)
T ss_dssp             TSC-SEEEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET------------------TTTEEEEEEECSS-SSCC
T ss_pred             cee-eeeee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC------------------CCCcEEEEEEcCC-CCcc
Confidence            211 01222 1 123456788999 6777777667888999986                  22221  111111 2346


Q ss_pred             EEEEECCCCCEEEE-EcCCCeEEEEECCC
Q 016982          208 FGVKWSPSGNTLAY-VGHNSMIYFVDDVG  235 (379)
Q Consensus       208 ~~~~~sp~~~~l~~-~~~d~~i~v~d~~~  235 (379)
                      ..++|+|+|++|+. -...+.|..++...
T Consensus       273 ~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          273 FHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             eeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            78999999995544 45678899987653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.36  E-value=0.00072  Score=56.19  Aligned_cols=200  Identities=9%  Similarity=-0.064  Sum_probs=116.6

Q ss_pred             ceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCCeEEEEeccCCcee
Q 016982           12 CITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        12 ~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~   89 (379)
                      .+.+++|++.+. ++.+-...+.|+.+++.+..... ..+...-.....+++.+.+..|+ +-...+.|.+++++.....
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            456788887544 44444456788888877652111 11111223456788887555554 4445678999998765422


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eCCC
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-STDG  166 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~  166 (379)
                       .+ ....-.....+++.|.+..|+.+..  .+.|...+++...    ...+....-.....++++|++..|..+ +..+
T Consensus       115 -~l-~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          115 -VL-FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSEIYWPNGLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             -EE-ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             -EE-EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----eEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence             22 1233456789999987666666553  4677776665433    222212333456899999976555544 4567


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      .|..+|+.                   +.....+ .........+++.. +.++.+-...+.|..++..+++.
T Consensus       189 ~I~~~d~d-------------------G~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          189 FIHKSNLD-------------------GTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEEETT-------------------SCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEEEcCC-------------------CCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            88888862                   1111111 22233456777753 34444555678899999866654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.36  E-value=0.00098  Score=57.41  Aligned_cols=206  Identities=9%  Similarity=-0.060  Sum_probs=119.2

Q ss_pred             CcceeEEEeCCCCcEEEEE-ecCCeEEEEEecCCc--eEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCeEEEEeccC
Q 016982           10 AQCITCHAWSPDHAMVAFC-PNNNEVHIYKLIQEK--WEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRNSYVWNQEG   85 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~   85 (379)
                      ...+.+++|++.+..|... ...+.|+.+++....  ......+.........+++.+.+..|+.+ ...+.|.+.+++.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            4567889999865555444 456788888886521  01222233234456789998855555444 4567899999887


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-  162 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-  162 (379)
                      ......+  ...-.....+++.|.+..|+....  .+.|...+++....   ...+ ...-.....++++|++..|..+ 
T Consensus       191 ~~~~~l~--~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~~~~-~~~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          191 VKRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLV-TENIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             CSEEEEE--ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---EEEE-CSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEE--eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---EEEE-ECCCCceEEEEEEeCCCEEEEEE
Confidence            6533322  223345789999997666666543  36777777665441   2222 3333567899999877666555 


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                      ...+.|..+|+..                .....+............+++. .+.++.+-...+.|..+|..+++.
T Consensus       265 ~~~~~I~~~d~dG----------------~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          265 SKLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             TTTTEEEEEETTS----------------CCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             CCCCEEEEEeCCC----------------CccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCc
Confidence            4567888888621                1111111111112334566663 333444555667788888666553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.36  E-value=0.00017  Score=59.20  Aligned_cols=163  Identities=9%  Similarity=0.078  Sum_probs=107.4

Q ss_pred             eccCcceeEEEeCCCCcEEEEEe-cCCeEEEEEecCCceEEEEEeccC----C--CceEEEEE---cCCCCEEEEEe---
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCP-NNNEVHIYKLIQEKWEKLHVLQKH----D--QIVSGIDW---SVRSNRIVTVS---   73 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~----~--~~v~~~~~---~~~~~~l~~~~---   73 (379)
                      ....--..+++|.+....|..++ ..+.|..|+...+....+ .+.+-    .  ..+..|.|   .|+++++++..   
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~   87 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK   87 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence            33444566889988666665555 689999999986543444 44431    1  14579999   68877776543   


Q ss_pred             ----------CCCeEEEEecc---CCceeeeEEeecC-----------CCceeEEEECCCCCEEEEEeCC-CeEEEEEee
Q 016982           74 ----------HDRNSYVWNQE---GSEWVPTLVILRL-----------NRAALCVQWSPKENKFAVGSGA-KTVCICYYE  128 (379)
Q Consensus        74 ----------~d~~i~vw~~~---~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-~~v~i~~~~  128 (379)
                                .+..|..+|+.   +++......+...           ...+..++..++|+..++++.. +.|..++.+
T Consensus        88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                      25779999999   6765444433221           1357899999999999988877 776554443


Q ss_pred             cCCceeEEEEEee----cCCcCEEEEEEcCCCcEEEEeeCCCeEEEEec
Q 016982          129 QENNWWVSKLIRK----RHDSSVTSVAWHPNNVFLATTSTDGKCRVFST  173 (379)
Q Consensus       129 ~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~  173 (379)
                      ...   .......    ......+.|+++|+++.|++....+.+..+|+
T Consensus       168 G~~---~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          168 GKT---VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             SCC---EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             CCE---EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence            332   1111101    11223668999999988888777999999987

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.32  E-value=0.0002  Score=62.34  Aligned_cols=202  Identities=9%  Similarity=0.060  Sum_probs=113.2

Q ss_pred             CcceeEEEeCCCCcEEEEEecC---C-eEEEEEecCCceEEEEEeccCCCceEEEEEcC-CCCEEEEEeCCCeEEEEecc
Q 016982           10 AQCITCHAWSPDHAMVAFCPNN---N-EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~d---g-~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~   84 (379)
                      .....+++++++|+++++....   . .+..++...+ +.....+. .......++++| ++.+.++-..++.|+.++..
T Consensus       181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC-eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            3457899999999954443311   1 2333333322 11111121 123346788999 66655555567889999988


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCc-eeEEEEEeec---------------CCcCE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENN-WWVSKLIRKR---------------HDSSV  147 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~-~~~~~~~~~~---------------~~~~v  147 (379)
                      ++.....+...........++|+|+++.|.++. ..+.|..++++.... ......+ .+               .-...
T Consensus       259 ~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~-ag~~g~~g~~dg~~~~a~~~~P  337 (433)
T 4hw6_A          259 TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIV-CGQHSSPGWVDGMGTGARLWGP  337 (433)
T ss_dssp             TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEE-EECTTCCCCBCEEGGGSBCSSE
T ss_pred             CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEE-EecCCCCccCCCcccceEEcCC
Confidence            776422222122223335799999999555554 467888887763211 0000111 11               11235


Q ss_pred             EEEEE---------cCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec----------------
Q 016982          148 TSVAW---------HPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL----------------  202 (379)
Q Consensus       148 ~~~~~---------~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  202 (379)
                      ..+++         .++++++++-...+.|+.++..                   + .+.++.+                
T Consensus       338 ~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~-------------------G-~v~t~~G~g~~~~~G~~dG~~~~  397 (433)
T 4hw6_A          338 NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE-------------------G-RVTTYAGRGNSREWGYVDGELRS  397 (433)
T ss_dssp             EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT-------------------S-EEEEEECCCTTCSSCCBCEETTT
T ss_pred             ccEEEEccccccccCCCCcEEEEECCCCEEEEECCC-------------------C-CEEEEEeCCCCCccccCCCcccc
Confidence            67888         6777777777777889888742                   2 1111111                


Q ss_pred             --CCcceEEEEEC-CCCCEEEEEcCCCeEEEEECC
Q 016982          203 --SFSWAFGVKWS-PSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       203 --~~~~v~~~~~s-p~~~~l~~~~~d~~i~v~d~~  234 (379)
                        .-.....++++ ++|.++++=.....|+.++++
T Consensus       398 ~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          398 QALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence              01236788888 566655555566778877653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.23  E-value=0.0015  Score=54.19  Aligned_cols=203  Identities=12%  Similarity=0.066  Sum_probs=119.4

Q ss_pred             CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC----CCE--E-EEEe-C--CCeEEEEecc--CCcee
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR----SNR--I-VTVS-H--DRNSYVWNQE--GSEWV   89 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~~~~-~--d~~i~vw~~~--~~~~~   89 (379)
                      ..+++.....+-+.+||+..   +.+..+..  +.++.+..-|+    |+.  | ++.. .  +++|.+|++.  ++.+.
T Consensus        40 ~s~ii~t~k~~gL~Vydl~G---~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLDG---KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             GCEEEEEETTTEEEEEETTS---CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             ccEEEEEcCCCCEEEEcCCC---cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            34555555678999999954   46666653  45666666552    322  3 3333 3  5789999774  44321


Q ss_pred             eeEEe---ecCC-CceeEEEE--CCC-CC-EEEEEeCCCeEEEEEeecCC----ceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           90 PTLVI---LRLN-RAALCVQW--SPK-EN-KFAVGSGAKTVCICYYEQEN----NWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        90 ~~~~~---~~~~-~~v~~~~~--~~~-~~-~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      ..-..   .... ..+..+++  +|. +. ++++...+|.+..|++....    ...+.+.+  ...+.+..+...+...
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f--~lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF--KMNSQTEGMAADDEYG  192 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE--ECSSCEEEEEEETTTT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe--cCCCCcceEEEcCCCC
Confidence            11000   0012 56677787  774 44 67778889999999885421    11234444  3456788999998888


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cC-CcceEEEEE--CCCCC-EEEEEc-CCCeEEEE
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LS-FSWAFGVKW--SPSGN-TLAYVG-HNSMIYFV  231 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~--sp~~~-~l~~~~-~d~~i~v~  231 (379)
                      .|..+-++..|..++..       ...      ..+.+.+..+. .+ ...+..|++  .++++ +|++++ .+.+..+|
T Consensus       193 ~Lyv~eEd~GIw~~da~-------p~~------~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy  259 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAE-------PDG------GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY  259 (355)
T ss_dssp             EEEEEETTTEEEEEECS-------TTS------CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             eEEEecccceEEEEeCC-------cCC------CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence            89999888665555431       000      01234444442 11 235778887  45655 666555 67799999


Q ss_pred             ECCCCCceeeeee
Q 016982          232 DDVGPSPLAQNVA  244 (379)
Q Consensus       232 d~~~~~~~~~~~~  244 (379)
                      |.....+.+..+.
T Consensus       260 dr~~~~~~vg~f~  272 (355)
T 3amr_A          260 DRQGKNKYVADFR  272 (355)
T ss_dssp             ESSTTCCEEEEEE
T ss_pred             ECCCCCcEEEEEE
Confidence            9874444445543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.21  E-value=0.0039  Score=58.44  Aligned_cols=187  Identities=19%  Similarity=0.133  Sum_probs=112.2

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCce--eeeEEeecCCCc
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEW--VPTLVILRLNRA  100 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~--~~~~~~~~~~~~  100 (379)
                      +|+.+. ...|+..++.......  .+. ....+..|+|.+....|+.+. ..+.|+.+++.....  .....+...-..
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~--l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~  472 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTS--LIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA  472 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEE--EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             cccccc-ccceeEeeccCCccee--eec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence            444443 3567887877653322  222 345678999998666665554 557788888875321  111122223456


Q ss_pred             eeEEEECCCCCEEEE-EeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC--CCeEEEEeccccc
Q 016982          101 ALCVQWSPKENKFAV-GSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST--DGKCRVFSTFIKG  177 (379)
Q Consensus       101 v~~~~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--d~~i~v~d~~~~~  177 (379)
                      ...|++.+.+..|+. -...+.|.+.+++...    .+.+..........|++.|.+.+|+....  .+.|...++.   
T Consensus       473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~----~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d---  545 (791)
T 3m0c_C          473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---  545 (791)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS----EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---
T ss_pred             cceeeeeecCCcEEEEecCCCeEEEEeCCCCe----EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC---
Confidence            678999887755554 4557889888877654    22331344456789999997655555442  3677777752   


Q ss_pred             cccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCC
Q 016982          178 VDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPS  237 (379)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~  237 (379)
                                      +.....+ ...-.....|++++.+..|+.+. ....|..+++....
T Consensus       546 ----------------G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          546 ----------------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             ----------------SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ----------------CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence                            2222222 22235678999998777776664 55789999987654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.19  E-value=0.0019  Score=53.91  Aligned_cols=252  Identities=10%  Similarity=0.036  Sum_probs=129.8

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec----cCCCceEEEEEcCC---CCEEEEE---eCCCeEE
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ----KHDQIVSGIDWSVR---SNRIVTV---SHDRNSY   79 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~---~~~l~~~---~~d~~i~   79 (379)
                      -...+.++|.|+|+++++-...|.|++++..++....+..+.    ........|+++|+   +..|...   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            456789999999998777654899999986655434444332    22456789999996   3444432   2345566


Q ss_pred             EEeccCC-----c---eeeeEEeec--CCCceeEEEECCCCCEEEEEeC-------------CCeEEEEEeecCCc----
Q 016982           80 VWNQEGS-----E---WVPTLVILR--LNRAALCVQWSPKENKFAVGSG-------------AKTVCICYYEQENN----  132 (379)
Q Consensus        80 vw~~~~~-----~---~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-------------d~~v~i~~~~~~~~----  132 (379)
                      -|.+..+     .   ....+....  .......+.|.|||.++++.+.             .|.|  +.++....    
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~I--lRi~~dG~ip~~  188 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKI--LRMTPDGEPAPG  188 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCE--EEECTTSSBCTT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEE--EEEeCCCCccCC
Confidence            6666542     1   111121111  1123467999999987777542             2333  33332211    


Q ss_pred             --eeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCC-ccCCcccceEEEeecCCcceE
Q 016982          133 --WWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGT-SSDTKFGEQILQLDLSFSWAF  208 (379)
Q Consensus       133 --~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~  208 (379)
                        ..-.+.+..+|.. ...++|+|++.++++-. .++.-.|--+. .....-.+.... ........++..+..+.....
T Consensus       189 nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~  266 (347)
T 3das_A          189 NPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS  266 (347)
T ss_dssp             CSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred             CCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence              0001223245554 45789999887665532 23322222211 000100000000 000011223444433333566


Q ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCc---eeeeeeeecCCeeeEEEecCCcEEEEEe
Q 016982          209 GVKWSPSGNTLAYVGHNSMIYFVDDVGPSP---LAQNVAFRDLPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       209 ~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~  266 (379)
                      .++|. +|..++..-..+.|....+.....   ....+......+..++..|||.++++..
T Consensus       267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            77776 355555554556666666654321   1122333345788999999998777543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.09  E-value=0.0035  Score=52.96  Aligned_cols=259  Identities=10%  Similarity=-0.003  Sum_probs=127.1

Q ss_pred             cceeEEEeCCCCc-EEEEEecCCeEEEEEecCCceEEEEEe----ccCCCceEEEEEcCC---CCEEEEEe-C-------
Q 016982           11 QCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEKWEKLHVL----QKHDQIVSGIDWSVR---SNRIVTVS-H-------   74 (379)
Q Consensus        11 ~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------   74 (379)
                      .....++|.|+|+ +++ +...|.|++++......+.+..+    .........++++|+   +..|..+. .       
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            4568999999999 555 45679999998533100011111    112345689999996   44554432 2       


Q ss_pred             CCeEEEEeccCC--cee--e-eEEeec----CCCceeEEEECCCCCEEEEEeCC-------------CeEEEEEeecCCc
Q 016982           75 DRNSYVWNQEGS--EWV--P-TLVILR----LNRAALCVQWSPKENKFAVGSGA-------------KTVCICYYEQENN  132 (379)
Q Consensus        75 d~~i~vw~~~~~--~~~--~-~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------~~v~i~~~~~~~~  132 (379)
                      ...|..+++...  ...  . .+....    .......+.|.|||.++++.+..             |.|.-++.+..-.
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235666666533  111  1 111111    11124679999999665554332             3444444332100


Q ss_pred             ----e-----eEEEEEeecCCcCEEEEEEcC-CCcEEEEeeC-CCeEEEEeccccccccc----cc-----cCCCc----
Q 016982          133 ----W-----WVSKLIRKRHDSSVTSVAWHP-NNVFLATTST-DGKCRVFSTFIKGVDIK----EK-----KEGTS----  188 (379)
Q Consensus       133 ----~-----~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~-d~~i~v~d~~~~~~~~~----~~-----~~~~~----  188 (379)
                          .     ...+.+..++. ....++|+| +++++++-.. ++.=.|.-+.. ....-    ..     .....    
T Consensus       177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCCCCCCCCccCcccC
Confidence                0     00122213443 357899999 5655554221 21112221110 00000    00     00000    


Q ss_pred             -cCCcccceEEEeecCCcceEEEEECC-------CCCEEEEEcCCCeEEEEECCCCCceeee---eeeecCCeeeEEEec
Q 016982          189 -SDTKFGEQILQLDLSFSWAFGVKWSP-------SGNTLAYVGHNSMIYFVDDVGPSPLAQN---VAFRDLPLRDVLFVS  257 (379)
Q Consensus       189 -~~~~~~~~~~~~~~~~~~v~~~~~sp-------~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~~i~~~~~s~  257 (379)
                       .......++..+..| ..+..++|.+       +|.++++.-..+.|...++..+. ....   +......+..+++.|
T Consensus       255 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          255 EIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDK-VTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             SSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTE-EEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCe-EeeeEEcccCCCCceeEEEECC
Confidence             000111223333333 3567788864       46777766677888888876542 2111   112234688999999


Q ss_pred             CCcEEEEEeCCCeEEEE
Q 016982          258 EKMVIGVGFDCNPMVFA  274 (379)
Q Consensus       258 ~~~~l~~~~d~~~~i~~  274 (379)
                      ||.++++..+..=+||.
T Consensus       333 dG~lyv~td~~~g~I~r  349 (353)
T 2g8s_A          333 DGYLYVLTDESSGELLK  349 (353)
T ss_dssp             TSCEEEEECSTTEEEEE
T ss_pred             CCcEEEEEeCCCCEEEE
Confidence            99977765433334443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.08  E-value=0.0075  Score=56.57  Aligned_cols=202  Identities=8%  Similarity=-0.066  Sum_probs=117.0

Q ss_pred             CcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCce--EEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCeEEEEeccC
Q 016982           10 AQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKW--EKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRNSYVWNQEG   85 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~   85 (379)
                      ...+.+++|++....| ++-...+.|+.+++.....  .....+.........|++.+.++.|+.+ ...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3456788888854444 4444567888888875311  1222333233456789998877666554 4567899999886


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeC-C-CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-A-KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-  162 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-  162 (379)
                      ......+  ...-.....|++.|.+..|+.... . +.|...+++...    ...+..........|++++.+..|+.+ 
T Consensus       503 ~~~~~l~--~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----~~~lv~~~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          503 VKRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             SSEEEEE--ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEE--eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc----eEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence            6532222  233356789999997666666553 2 667777766544    223313334567899999776655555 


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ec--CCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCc
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DL--SFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSP  238 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~  238 (379)
                      ...+.|..+++.                   +.....+ ..  .-.....|++.  +.+|+.+ ...+.|...|..++..
T Consensus       577 ~~~~~I~~~d~d-------------------G~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          577 SKLHSISSIDVN-------------------GGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  635 (791)
T ss_dssp             TTTTEEEEEETT-------------------SCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCC
T ss_pred             CCCCcEEEEecC-------------------CCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcc
Confidence            445678888762                   1111111 11  11234566664  3344444 4567888888666543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.06  E-value=0.0017  Score=53.55  Aligned_cols=238  Identities=11%  Similarity=0.076  Sum_probs=118.2

Q ss_pred             CCcEEEEEe-cC-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCc--
Q 016982           21 DHAMVAFCP-NN-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSE--   87 (379)
Q Consensus        21 ~~~~l~~~~-~d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~--   87 (379)
                      ++.+++.|+ .+     ..+.+||..++++..+..+.........+.  .++..++.|+.+     ..+.+||..+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            556777777 33     478999999887766654443222222222  246666777654     358999998877  


Q ss_pred             -eeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           88 -WVPTLVILRLNRAALCVQWSPKENKFAVGSGA-----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        88 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                       +...-...........+.+  +++.++.|+.+     ..+.+||..+.. |.....+ .........+.+  +++.++.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~-p~~r~~~~~~~~--~~~iyv~  165 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ-WSMLGDM-QTAREGAGLVVA--SGVIYCL  165 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE-EEEEEEC-SSCCBSCEEEEE--TTEEEEE
T ss_pred             eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe-EEECCCC-CCCcccceEEEE--CCEEEEE
Confidence             5544221111111222222  56777777653     356777766554 3332222 111122222222  6778888


Q ss_pred             eeCC-----CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-----CeEEEE
Q 016982          162 TSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-----SMIYFV  231 (379)
Q Consensus       162 ~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~v~  231 (379)
                      |+.+     ..+.+||+...                ....+..+.........+.+  ++++++.|+.+     ..+.+|
T Consensus       166 GG~~~~~~~~~~~~~d~~~~----------------~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y  227 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTG----------------HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAY  227 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTT----------------EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred             CCCCCCcccceEEEEeCCCC----------------cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEE
Confidence            7754     35778886311                11111111111111122222  56667777653     468999


Q ss_pred             ECCCCCceeeeeeeec-CCeeeEEEecCCcEEE-EEeCC-----CeEEEEecCCCcEEEEEEe
Q 016982          232 DDVGPSPLAQNVAFRD-LPLRDVLFVSEKMVIG-VGFDC-----NPMVFAADETGIWTFIKFL  287 (379)
Q Consensus       232 d~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~-~~~d~-----~~~i~~~~~~~~~~~~~~~  287 (379)
                      |+.+..-  ..+.... ......+..-++++++ +|.++     .+.+|+.. ...|.....+
T Consensus       228 d~~~~~W--~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~  287 (301)
T 2vpj_A          228 NIRTDSW--TTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI-IDSWEVVTSM  287 (301)
T ss_dssp             ETTTTEE--EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETT-TTEEEEEEEE
T ss_pred             eCCCCcE--EECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCC-CCeEEEcCCC
Confidence            9876531  2222111 1111122223666665 44443     23444433 3568776543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.05  E-value=0.0073  Score=55.23  Aligned_cols=222  Identities=12%  Similarity=0.032  Sum_probs=132.4

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeEEeecCCCce
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILRLNRAA  101 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~v  101 (379)
                      .+|+.+ ....|+..++.+........+.+ -..+..++|++.+..|+.+. .++.|..+++........+  .......
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~--~~g~~~P   82 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV--EFGLDYP   82 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CSSCSCC
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE--eCCCCCc
Confidence            355554 45789999998764332222222 34578999999877776554 5688999988765432222  2222456


Q ss_pred             eEEEECCCCCEEE-EEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee--CCCeEEEEecccccc
Q 016982          102 LCVQWSPKENKFA-VGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS--TDGKCRVFSTFIKGV  178 (379)
Q Consensus       102 ~~~~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~i~v~d~~~~~~  178 (379)
                      ..+++.+.+..|+ +-...+.|.+.+++...    .+.+....-.....+++.|....|....  ..+.|...++.    
T Consensus        83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~----~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d----  154 (628)
T 4a0p_A           83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQH----RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD----  154 (628)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSTT----CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT----
T ss_pred             ceEEEEeCCCEEEEEECCCCEEEEEecCCCc----EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC----
Confidence            7888887655454 44456788888876554    2222123445678999998654555444  24567666652    


Q ss_pred             ccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceeeeeeeecCCeeeEEEec
Q 016982          179 DIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                                     +.....+-..-.....++++++++.|+.+. ..+.|..+|+.....  +.+........++++..
T Consensus       155 ---------------G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~  217 (628)
T 4a0p_A          155 ---------------GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ  217 (628)
T ss_dssp             ---------------SCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET
T ss_pred             ---------------CCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC
Confidence                           222222222345678999999877776664 567899999876543  23333333456777765


Q ss_pred             CCcEEEEEe-CCCeEEEE
Q 016982          258 EKMVIGVGF-DCNPMVFA  274 (379)
Q Consensus       258 ~~~~l~~~~-d~~~~i~~  274 (379)
                       +.++.+.. .+.|..++
T Consensus       218 -~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          218 -DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             -TEEEEEETTTTEEEEEE
T ss_pred             -CEEEEecCCCCEEEEEE
Confidence             34444433 44555554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.01  E-value=0.0023  Score=52.93  Aligned_cols=191  Identities=14%  Similarity=0.058  Sum_probs=98.9

Q ss_pred             CCCcEEEEEec----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC----C-----CeEEEEeccCC
Q 016982           20 PDHAMVAFCPN----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH----D-----RNSYVWNQEGS   86 (379)
Q Consensus        20 ~~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----~~i~vw~~~~~   86 (379)
                      -++.+++.|+.    -..+.+||..+.++..+..+.........+.+  ++..++.|+.    +     ..+.+||..+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            35677888874    24789999998877766544432222222222  4556666654    2     35889999888


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ++...-...........+.+  ++++++.|+.+     ..+.+||..+.. |.....+ .........+.+  ++++++.
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~-p~~r~~~~~~~~--~~~iyv~  174 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE-WHLVAPM-LTRRIGVGVAVL--NRLLYAV  174 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE-EEECCCC-SSCCBSCEEEEE--TTEEEEE
T ss_pred             eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe-EeECCCC-CccccceEEEEE--CCEEEEE
Confidence            76544321111112222222  56777776643     346677766543 2222222 111122222333  6778888


Q ss_pred             eeCC-----CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-----CeEEEE
Q 016982          162 TSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-----SMIYFV  231 (379)
Q Consensus       162 ~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~v~  231 (379)
                      |+.+     ..+.+||+....                ...+..+.........+.+  ++++++.|+.+     ..+.+|
T Consensus       175 GG~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y  236 (308)
T 1zgk_A          175 GGFDGTNRLNSAECYYPERNE----------------WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY  236 (308)
T ss_dssp             CCBCSSCBCCCEEEEETTTTE----------------EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred             eCCCCCCcCceEEEEeCCCCe----------------EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence            7764     357788863211                1111111111111222333  56677777654     568999


Q ss_pred             ECCCC
Q 016982          232 DDVGP  236 (379)
Q Consensus       232 d~~~~  236 (379)
                      |+.+.
T Consensus       237 d~~~~  241 (308)
T 1zgk_A          237 DVETE  241 (308)
T ss_dssp             ETTTT
T ss_pred             eCCCC
Confidence            98775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.99  E-value=0.0034  Score=51.80  Aligned_cols=144  Identities=10%  Similarity=0.151  Sum_probs=79.4

Q ss_pred             CcEEEEEec--CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC----CeEEEEeccCCceeeeEEee
Q 016982           22 HAMVAFCPN--NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD----RNSYVWNQEGSEWVPTLVIL   95 (379)
Q Consensus        22 ~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~~~   95 (379)
                      +.+++.|+.  ...+.+||..+++|..+..+.........+.+  ++..++.|+.+    ..+.+||..+.++...-...
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            345666664  35799999999877766555433222223332  45666777654    56889999998765543221


Q ss_pred             cCCCceeEEEECCCCCEEEEEeCC------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-----
Q 016982           96 RLNRAALCVQWSPKENKFAVGSGA------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-----  164 (379)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----  164 (379)
                      ........+.+  ++++++.|+.+      ..+.+||..+.. |.....+ .........+.+  ++++++.|+.     
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES-WHTKPSM-LTQRCSHGMVEA--NGLIYVCGGSLGNNV  163 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE-EEEECCC-SSCCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc-eEeCCCC-cCCcceeEEEEE--CCEEEEECCCCCCCC
Confidence            11111222222  56777777754      457777776654 3222222 111112222222  6677777764     


Q ss_pred             ----CCeEEEEec
Q 016982          165 ----DGKCRVFST  173 (379)
Q Consensus       165 ----d~~i~v~d~  173 (379)
                          -..+.+||+
T Consensus       164 ~~~~~~~~~~yd~  176 (306)
T 3ii7_A          164 SGRVLNSCEVYDP  176 (306)
T ss_dssp             TCEECCCEEEEET
T ss_pred             cccccceEEEeCC
Confidence                344778886

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.99  E-value=0.0022  Score=52.88  Aligned_cols=190  Identities=14%  Similarity=0.116  Sum_probs=96.9

Q ss_pred             CCcEEEEEecC----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCceeee
Q 016982           21 DHAMVAFCPNN----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSEWVPT   91 (379)
Q Consensus        21 ~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~   91 (379)
                      ++.+++.|+.+    ..+..||..+.++..+..+......-..+.+  ++..++.|+.+     ..+.+||..+.++...
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            34567777653    4688999998877766544432222222222  55666676644     3588999988876554


Q ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCC-----eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-
Q 016982           92 LVILRLNRAALCVQWSPKENKFAVGSGAK-----TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-  165 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-  165 (379)
                      -...........+.+  ++..++.|+.++     .+.+||..+.. |.....+ .........+.+  +++.++.|+.+ 
T Consensus        93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG~~~  166 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFHVAPM-NTRRSSVGVGVV--GGLLYAVGGYDV  166 (302)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE-EEEECCC-SSCCBSCEEEEE--TTEEEEECCEET
T ss_pred             CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe-EeecCCC-CCcccCceEEEE--CCEEEEEeCCCC
Confidence            321111111222222  567777777543     35566655443 2222222 111122222222  67777777643 


Q ss_pred             ------CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-----CeEEEEECC
Q 016982          166 ------GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-----SMIYFVDDV  234 (379)
Q Consensus       166 ------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~v~d~~  234 (379)
                            ..+.+||+...                ....+..+.........+.+  ++++++.|+.+     ..+.+||+.
T Consensus       167 ~~~~~~~~~~~yd~~~~----------------~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  228 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTN----------------EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPT  228 (302)
T ss_dssp             TTTEECCCEEEEETTTT----------------EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETT
T ss_pred             CCCccccEEEEEeCCCC----------------cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence                  34778876311                11111111111111222222  56677777654     468899987


Q ss_pred             CC
Q 016982          235 GP  236 (379)
Q Consensus       235 ~~  236 (379)
                      +.
T Consensus       229 ~~  230 (302)
T 2xn4_A          229 TN  230 (302)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=0.0098  Score=52.18  Aligned_cols=199  Identities=9%  Similarity=-0.016  Sum_probs=114.7

Q ss_pred             ceeEEEe-------CCCCcEEEEEecCC-------eEEEEEecC-Cce------EEEEEeccCCCceEEEEEcCCCCE-E
Q 016982           12 CITCHAW-------SPDHAMVAFCPNNN-------EVHIYKLIQ-EKW------EKLHVLQKHDQIVSGIDWSVRSNR-I   69 (379)
Q Consensus        12 ~i~~~~~-------s~~~~~l~~~~~dg-------~i~i~~~~~-~~~------~~~~~~~~~~~~v~~~~~~~~~~~-l   69 (379)
                      ....++|       +++|+.|+++...+       .|.+++... +.+      ..+..+.    ....++++|++.. +
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~----~p~giavdp~~g~LY  262 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK----QCNGATIHPINGELY  262 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES----CCCCEEECTTTCCEE
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC----CceEEEEcCCCCeEE
Confidence            5889999       99998666665543       266665443 222      2222222    3357889995544 5


Q ss_pred             EEEeCCCeEEEEecc-------CCce-----------eeeEEeecCCCceeEEEECCCCCEEEEE-eCCCeEEEEEeecC
Q 016982           70 VTVSHDRNSYVWNQE-------GSEW-----------VPTLVILRLNRAALCVQWSPKENKFAVG-SGAKTVCICYYEQE  130 (379)
Q Consensus        70 ~~~~~d~~i~vw~~~-------~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~  130 (379)
                      ++-..++.|..+|+.       ++..           ...+...+.......++|+|+|+.|.++ .....|+.++++..
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~  342 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI  342 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence            555577889999997       5543           1122112233456899999999965555 45678888777653


Q ss_pred             CceeE--EEEEeecC---------------CcCEE-EEEEc-------CCCcEEEEeeCCCeEEEEeccccccccccccC
Q 016982          131 NNWWV--SKLIRKRH---------------DSSVT-SVAWH-------PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       131 ~~~~~--~~~~~~~~---------------~~~v~-~~~~~-------p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  185 (379)
                      ... +  ...+ .+.               -.... .+...       +++.++++-..+..|+.++..           
T Consensus       343 ~~~-~~~~~~~-aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-----------  409 (496)
T 3kya_A          343 KKE-FITPYNF-VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-----------  409 (496)
T ss_dssp             TTE-ECCCEEE-EEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-----------
T ss_pred             cce-ecccEEe-cCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-----------
Confidence            311 1  0111 111               01233 44444       456666666677888888742           


Q ss_pred             CCccCCcccceEEEeec------------------------CCcceEEEEECCC-CCEEEEEcCCCeEEEEECCCC
Q 016982          186 GTSSDTKFGEQILQLDL------------------------SFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~------------------------~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~~~~  236 (379)
                              + .+.++-+                        .-.....|+++++ |.++++=.....|+.+++...
T Consensus       410 --------G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          410 --------G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             --------C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             --------C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                    1 1111111                        1123578888886 665555556778888887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.90  E-value=0.0016  Score=53.85  Aligned_cols=190  Identities=6%  Similarity=0.039  Sum_probs=101.2

Q ss_pred             CCcEEEEEecC----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEeccCCceee
Q 016982           21 DHAMVAFCPNN----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQEGSEWVP   90 (379)
Q Consensus        21 ~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~~~   90 (379)
                      ++.+++.|+.+    ..+.+||..++++..+..+.........+.+  +++.++.|+.+      ..+.+||..+.++..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            56777888754    6789999999888777665533322223333  56666777654      458899999887655


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeC---------CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSG---------AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      .-.. .....-.++.. -++++++.|+.         -..+.+||..+.. |.....+ .........+.+  ++++++.
T Consensus       133 ~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~-p~~r~~~~~~~~--~~~i~v~  206 (306)
T 3ii7_A          133 KPSM-LTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-WTELCPM-IEARKNHGLVFV--KDKIFAV  206 (306)
T ss_dssp             ECCC-SSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTE-EEEECCC-SSCCBSCEEEEE--TTEEEEE
T ss_pred             CCCC-cCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCe-EEECCCc-cchhhcceEEEE--CCEEEEE
Confidence            4221 11111112222 25666777653         2447777776653 3222222 111112222223  6778888


Q ss_pred             eeCC-----CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-----CeEEEE
Q 016982          162 TSTD-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-----SMIYFV  231 (379)
Q Consensus       162 ~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~v~  231 (379)
                      |+.+     ..+.+||+...                ....+..+.........+.+  ++++++.|+.+     ..+.+|
T Consensus       207 GG~~~~~~~~~~~~yd~~~~----------------~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~y  268 (306)
T 3ii7_A          207 GGQNGLGGLDNVEYYDIKLN----------------EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEY  268 (306)
T ss_dssp             CCEETTEEBCCEEEEETTTT----------------EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEE
T ss_pred             eCCCCCCCCceEEEeeCCCC----------------cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEE
Confidence            7754     35778886311                11111111111112223333  56777777743     467788


Q ss_pred             ECCCC
Q 016982          232 DDVGP  236 (379)
Q Consensus       232 d~~~~  236 (379)
                      |+.+.
T Consensus       269 d~~~~  273 (306)
T 3ii7_A          269 NTETD  273 (306)
T ss_dssp             ETTTT
T ss_pred             cCCCC
Confidence            87664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.90  E-value=0.002  Score=53.01  Aligned_cols=145  Identities=9%  Similarity=0.092  Sum_probs=82.5

Q ss_pred             CCcEEEEEecC-----CeEEEEEecCCc---eEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCCc
Q 016982           21 DHAMVAFCPNN-----NEVHIYKLIQEK---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGSE   87 (379)
Q Consensus        21 ~~~~l~~~~~d-----g~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~   87 (379)
                      ++.+++.|+.+     ..+.+||..+++   ++.+..+.........+.+  +++.++.|+.+     ..+.+||..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56777777754     468999999887   7777655443322223333  46666666543     358899999887


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGA-----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      +...-...........+.+  ++++++.|+.+     ..+.+||..+.. |.....+ .........+.+  ++++++.|
T Consensus       140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~-p~~r~~~~~~~~--~~~i~v~G  213 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH-WTNVTPM-ATKRSGAGVALL--NDHIYVVG  213 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE-EEEECCC-SSCCBSCEEEEE--TTEEEEEC
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc-EEeCCCC-CcccccceEEEE--CCEEEEEe
Confidence            7654332211111222222  57777777654     347777776653 3222222 111112222333  67788888


Q ss_pred             eCC-----CeEEEEec
Q 016982          163 STD-----GKCRVFST  173 (379)
Q Consensus       163 ~~d-----~~i~v~d~  173 (379)
                      +.+     ..+.+||+
T Consensus       214 G~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             CBCSSSBCCCEEEEET
T ss_pred             CCCCCcccceEEEEeC
Confidence            764     45888886

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.88  E-value=0.024  Score=55.67  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=48.7

Q ss_pred             cCcceeEEEeCCC------CcEEEEEec-CCeEEEEEecCCceEEEEEeccCCCceEEEEEc--CCCCEEEEEeCCCeEE
Q 016982            9 FAQCITCHAWSPD------HAMVAFCPN-NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS--VRSNRIVTVSHDRNSY   79 (379)
Q Consensus         9 ~~~~i~~~~~s~~------~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~   79 (379)
                      ....|.|+++.|.      ++++|+|.. |++|+|+++.+-+......+.. .....++.+.  ....+|..|-.||.+.
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~  630 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALF  630 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence            3578999999863      368999996 9999999998643222233432 1223333332  2335788888999876


Q ss_pred             EEecc
Q 016982           80 VWNQE   84 (379)
Q Consensus        80 vw~~~   84 (379)
                      -+.+.
T Consensus       631 ~~~~d  635 (1158)
T 3ei3_A          631 YFGLN  635 (1158)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            66553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.88  E-value=0.00036  Score=64.77  Aligned_cols=178  Identities=11%  Similarity=-0.041  Sum_probs=96.5

Q ss_pred             CCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCc-eeEEEEEeecCCcCEEEEEE
Q 016982           75 DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENN-WWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        75 d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~~~~~  152 (379)
                      .+.|+..++.+.+....+   .....+..++|++.+..|+.+. ..+.|+.+++..... ......+ .........+++
T Consensus       385 ~~~I~~id~~~~~~~~~~---~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i-~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCCEECCS---CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC-CSCC--CCCEEC
T ss_pred             ccceEEEeCCCCcceeee---ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE-eCCCCCcceEEE
Confidence            456888888776543332   2234567899998776666654 457888888765110 0011111 111223456788


Q ss_pred             cCCC-cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcC--CCeE
Q 016982          153 HPNN-VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGH--NSMI  228 (379)
Q Consensus       153 ~p~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~--d~~i  228 (379)
                      .+.+ +++++-...+.|.++++.                   +.....+ .........++++|.+.+|+.+..  .+.|
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~d-------------------g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I  521 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTK-------------------GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKI  521 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSS-------------------SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCE
T ss_pred             EeeCCcEEEEeccCCeEEEEecC-------------------CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeE
Confidence            7544 555554567789888752                   2222222 222234578899997666655443  2678


Q ss_pred             EEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEE--eCCCeEEEEec
Q 016982          229 YFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVG--FDCNPMVFAAD  276 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~d~~~~i~~~~  276 (379)
                      ..+++...... ..+...-.....|+|+|++..|..+  ..+.|..++++
T Consensus       522 ~~~~~dG~~~~-~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d  570 (699)
T 1n7d_A          522 KKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN  570 (699)
T ss_dssp             EBCCSSSCCCC-EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred             EEEeCCCCCee-EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence            88877654321 1122223346789999876544433  33345555444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.87  E-value=0.011  Score=53.99  Aligned_cols=199  Identities=8%  Similarity=-0.023  Sum_probs=112.4

Q ss_pred             cceeEEEeCCCCcEEEEEe-cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEE-eCCCeEEEEeccCCce
Q 016982           11 QCITCHAWSPDHAMVAFCP-NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV-SHDRNSYVWNQEGSEW   88 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~   88 (379)
                      ..+.+++|++.++.|..+. ..+.|..+++.+.. .....+...-.....+++.+.++.|+.+ ...+.|.+.++.....
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-ceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            4567888988666555443 46788888877541 1122333333467899999876666555 4568899999876542


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eCC
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-STD  165 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d  165 (379)
                       ..+. ...-.....+++.|.+..|+....  .+.|...+++...    ...+..........+++++++..|..+ ...
T Consensus       119 -~~l~-~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~----~~~l~~~~~~~P~Glald~~~~~LY~aD~~~  192 (619)
T 3s94_A          119 -KVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSEIYWPNGLTLDYEEQKLYWADAKL  192 (619)
T ss_dssp             -EEEE-CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSSEEEEEEETTTTEEEEEETTT
T ss_pred             -EEEE-eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc----eEEEEeCCCCCCcEEEEEccCCEEEEEeCCC
Confidence             2221 233456789999997666665553  3456555555433    222213344567899999876555544 456


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCC
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPS  237 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~  237 (379)
                      +.|..+|+..                   .....+ .........+++..+  .|+.+ ...+.|...|..+++
T Consensus       193 ~~I~~~~~dG-------------------~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          193 NFIHKSNLDG-------------------TNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             CCEEEESSSC-------------------CEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred             CeEEEecCCC-------------------CccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence            7788887631                   111111 111112345666655  44444 356778888876554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.86  E-value=0.0061  Score=50.54  Aligned_cols=186  Identities=10%  Similarity=0.015  Sum_probs=94.6

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-----C------CeEEEEeccCCceeeeE
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-----D------RNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------~~i~vw~~~~~~~~~~~   92 (379)
                      +++.|+  ..+.+||..+++|.. ..+..............++..++.|+.     .      ..+.+||..+.++...-
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            445565  579999999987765 444332222233333456777777773     1      12778899888764432


Q ss_pred             EeecCCCceeEEEECCCCCEEEEEeCC--------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           93 VILRLNRAALCVQWSPKENKFAVGSGA--------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      .. .....-.+++.. ++..++.|+.+        ..+.+||..+.. |.....+ .........+.  -+++.++.|+.
T Consensus        84 ~~-p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~-p~~r~~~~~~~--~~~~iyv~GG~  157 (315)
T 4asc_A           84 PL-PSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFK-WGESDPL-PYVVYGHTVLS--HMDLVYVIGGK  157 (315)
T ss_dssp             CB-SSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTE-EEECCCC-SSCCBSCEEEE--ETTEEEEECCB
T ss_pred             CC-CcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCc-EeECCCC-CCcccceeEEE--ECCEEEEEeCC
Confidence            11 111111122222 56677777632        347777776553 3222222 11112222222  36778888876


Q ss_pred             -C-----CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCC-----eEEEEEC
Q 016982          165 -D-----GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNS-----MIYFVDD  233 (379)
Q Consensus       165 -d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~v~d~  233 (379)
                       +     ..+.+||+....                ...+..+.........+.+  ++++++.|+.++     .+.+||+
T Consensus       158 ~~~~~~~~~~~~yd~~~~~----------------W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~  219 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFE----------------WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSI  219 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTE----------------EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEET
T ss_pred             CCCCcccceEEEEeCCCCe----------------EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEEC
Confidence             2     357888863211                1111111111111122222  567777776543     5888998


Q ss_pred             CCC
Q 016982          234 VGP  236 (379)
Q Consensus       234 ~~~  236 (379)
                      .+.
T Consensus       220 ~~~  222 (315)
T 4asc_A          220 TDN  222 (315)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.84  E-value=0.00022  Score=66.13  Aligned_cols=216  Identities=17%  Similarity=0.084  Sum_probs=115.6

Q ss_pred             CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccC----CceeeeEEeecCCCceeEEE
Q 016982           31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEG----SEWVPTLVILRLNRAALCVQ  105 (379)
Q Consensus        31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~----~~~~~~~~~~~~~~~v~~~~  105 (379)
                      .+.|+..++.+.+  ....+. ....+..++|++.+..|+.+. ..+.|+.+++.+    ......+  ...-.....++
T Consensus       385 ~~~I~~id~~~~~--~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i--~~~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSE--YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCC--EECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC--CSCC--CCCEE
T ss_pred             ccceEEEeCCCCc--ceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE--eCCCCCcceEE
Confidence            3578888877652  222222 234567899998777776654 457899998875    2211111  11123456788


Q ss_pred             ECCCC-CEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC--CCeEEEEecccccccccc
Q 016982          106 WSPKE-NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST--DGKCRVFSTFIKGVDIKE  182 (379)
Q Consensus       106 ~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--d~~i~v~d~~~~~~~~~~  182 (379)
                      +.+.+ +++++-...+.|.+++++...   ....+ .........++++|.+.+|+....  .+.|.++++.        
T Consensus       460 vD~~~g~LY~tD~~~~~I~v~d~dg~~---~~~l~-~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--------  527 (699)
T 1n7d_A          460 VDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLF-REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--------  527 (699)
T ss_dssp             CCCSSSBCEECCTTTSCEEEEBSSSCC---EEEEC-CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--------
T ss_pred             EEeeCCcEEEEeccCCeEEEEecCCCc---eEEEE-eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--------
Confidence            88644 444444556788888776554   22222 222344578899987655544432  2667776642        


Q ss_pred             ccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeeeeee--ecCCeeeEEEecC
Q 016982          183 KKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQNVAF--RDLPLRDVLFVSE  258 (379)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~  258 (379)
                                 +.....+ ...-.....|+|+|++..|+.+ ...+.|..+++...... ..+..  .......+++..+
T Consensus       528 -----------G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~  595 (699)
T 1n7d_A          528 -----------GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFED  595 (699)
T ss_dssp             -----------SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETT
T ss_pred             -----------CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECC
Confidence                       1111111 1112345789999976555544 46678999998654321 22211  1123456666554


Q ss_pred             CcEEEEEeCCCeEEEEe
Q 016982          259 KMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       259 ~~~l~~~~d~~~~i~~~  275 (379)
                      .-|++....+.|..++.
T Consensus       596 ~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          596 KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             EEEEECSTTTCEEEEET
T ss_pred             EEEEEeCCCCeEEEEEc
Confidence            22223333445555543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.81  E-value=0.011  Score=49.55  Aligned_cols=188  Identities=13%  Similarity=0.075  Sum_probs=108.6

Q ss_pred             ceEEEEEcCCCCEEEEE------------eCCCeEEEEeccCC--ceeeeEEeec-----CCCceeEEEECC--CCC-EE
Q 016982           56 IVSGIDWSVRSNRIVTV------------SHDRNSYVWNQEGS--EWVPTLVILR-----LNRAALCVQWSP--KEN-KF  113 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~------------~~d~~i~vw~~~~~--~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l  113 (379)
                      ....+...|+|..++++            ..+|.|.++|..+.  +. ..+...+     .......+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            34567778877554444            16899999998743  32 2233332     123566777755  353 34


Q ss_pred             EEEe-C--CCeEEEEEeecCCc-eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-----------------CCeEEEEe
Q 016982          114 AVGS-G--AKTVCICYYEQENN-WWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-----------------DGKCRVFS  172 (379)
Q Consensus       114 ~~~~-~--d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-----------------d~~i~v~d  172 (379)
                      +++. .  +..+.+|+++.... ......+........+++.+.++|.++++...                 .|.+.-+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            4443 2  56788998887543 12222331222356789999999987776541                 13333333


Q ss_pred             ccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCcee--eeeeeecCC
Q 016982          173 TFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLA--QNVAFRDLP  249 (379)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~--~~~~~~~~~  249 (379)
                      .                    ++ +..+...-...+.++|+||++.|+.+. ..+.|..|++.....+.  +.+ .....
T Consensus       210 ~--------------------~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~  267 (355)
T 3sre_A          210 P--------------------ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTL  267 (355)
T ss_dssp             T--------------------TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSE
T ss_pred             C--------------------Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCC
Confidence            1                    11 111211123468999999998877664 56899999986433221  222 22345


Q ss_pred             eeeEEEec-CCcEEEEEe
Q 016982          250 LRDVLFVS-EKMVIGVGF  266 (379)
Q Consensus       250 i~~~~~s~-~~~~l~~~~  266 (379)
                      .-.+++.+ +|.+.+++.
T Consensus       268 PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          268 VDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEECTTTCCEEEEEE
T ss_pred             CceEEEeCCCCcEEEEec
Confidence            67788888 588877554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.81  E-value=0.0017  Score=53.47  Aligned_cols=145  Identities=16%  Similarity=0.207  Sum_probs=80.5

Q ss_pred             CCcEEEEEecC-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEeccCCceee
Q 016982           21 DHAMVAFCPNN-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR-----NSYVWNQEGSEWVP   90 (379)
Q Consensus        21 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~~~~   90 (379)
                      ++.+++.|+.+     ..+.+||..+.++..+..+.........+.+  ++..++.|+.++     .+.+||+.+.++..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56777777754     3688999998877777655443322223333  466667776543     47889998887655


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCC-------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGA-------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .-.. .....-.+++. -+++.++.|+.+       ..+.+||..+.. |.....+ .........+.+  ++++++.|+
T Consensus       139 ~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~-p~~r~~~~~~~~--~~~iyv~GG  212 (302)
T 2xn4_A          139 VAPM-NTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNE-WTYIAEM-STRRSGAGVGVL--NNLLYAVGG  212 (302)
T ss_dssp             ECCC-SSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTE-EEEECCC-SSCCBSCEEEEE--TTEEEEECC
T ss_pred             cCCC-CCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCc-EEECCCC-ccccccccEEEE--CCEEEEECC
Confidence            4221 11111122222 256677776542       346777776553 3222222 111122222333  678888887


Q ss_pred             CC-----CeEEEEec
Q 016982          164 TD-----GKCRVFST  173 (379)
Q Consensus       164 ~d-----~~i~v~d~  173 (379)
                      .+     ..+.+||+
T Consensus       213 ~~~~~~~~~~~~yd~  227 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDP  227 (302)
T ss_dssp             BSSSSBCCCEEEEET
T ss_pred             CCCCcccceEEEEeC
Confidence            64     35788886

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.78  E-value=0.022  Score=52.08  Aligned_cols=198  Identities=7%  Similarity=-0.057  Sum_probs=118.6

Q ss_pred             cceeEEEeCCCCcEEE-EEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCce
Q 016982           11 QCITCHAWSPDHAMVA-FCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEW   88 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~   88 (379)
                      ..+.+++|++.+..|. +-..++.|+.+++.....+.  .+.........+++.+.+..|+.+. ..+.|.+.++.....
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~--v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~  114 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH--VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR  114 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE--EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE
Confidence            3567899998665554 44457889988887653222  2222223457888887766665544 567899999876542


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eCC
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-STD  165 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d  165 (379)
                       ..+. ...-.....+++.|....|+....  .+.|...+++...    ...+ .........++++++++.|..+ ...
T Consensus       115 -~~l~-~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~----~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          115 -QVLV-WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE----RTTL-VPNVGRANGLTIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             -EEEE-CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEE-ECSCSSEEEEEEETTTTEEEEEETTT
T ss_pred             -EEEE-eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc----eEEE-ECCCCCcceEEEccccCEEEEEECCC
Confidence             2221 233356789999996555665543  4566666665544    2222 2344567899999976655554 456


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      +.|..+|+..                 ...  ..+.........+++.. +.++++-...+.|...|..+++
T Consensus       188 ~~I~~~d~dG-----------------~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          188 NLIESSNMLG-----------------LNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             TEEEEEETTS-----------------CSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             CEEEEEcCCC-----------------Cce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            7888888631                 011  11222223355777764 3444444457888888865553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.75  E-value=0.011  Score=50.22  Aligned_cols=158  Identities=15%  Similarity=0.125  Sum_probs=95.4

Q ss_pred             CCCCEEEEEeCCCeEEEEeccCCceeeeEEeec--CCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce--------
Q 016982           64 VRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR--LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW--------  133 (379)
Q Consensus        64 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--------  133 (379)
                      .+|..|+.+- ++.||.-++.....-+.+....  .-..+..+..+|+|++||..+. ..|.|..+..+...        
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            3455555543 3667777776443223333221  1236788999999999999874 67888777632200        


Q ss_pred             -eEEEEEeec-----CCcCEEEEEEcCCC---cEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          134 -WVSKLIRKR-----HDSSVTSVAWHPNN---VFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       134 -~~~~~~~~~-----~~~~v~~~~~~p~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                       ...+.+..+     ...+|..+.|+|-+   ..|++-..|+.|++||+..     ... .|.  +.+.......+....
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~-----s~~-~P~--~L~k~~~~fg~d~~~  179 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN-----SQE-KPI--VLNKPNNSFGLDARV  179 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC-----TTS-CCE--EESCCCSEEESCSSC
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc-----CCC-CCc--chhccccccCCCccc
Confidence             011222111     35679999999964   6899999999999999842     000 000  011111112223334


Q ss_pred             cceEEEEECCCCCEEEEEc--CCCeEEEE
Q 016982          205 SWAFGVKWSPSGNTLAYVG--HNSMIYFV  231 (379)
Q Consensus       205 ~~v~~~~~sp~~~~l~~~~--~d~~i~v~  231 (379)
                      ..|.+++|.+++-.|...+  ..|.|+-.
T Consensus       180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            6789999999887777644  77888765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.69  E-value=0.0022  Score=53.10  Aligned_cols=145  Identities=12%  Similarity=0.149  Sum_probs=80.2

Q ss_pred             CCcEEEEEec----C-----CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEeccCC
Q 016982           21 DHAMVAFCPN----N-----NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-----RNSYVWNQEGS   86 (379)
Q Consensus        21 ~~~~l~~~~~----d-----g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~   86 (379)
                      ++.+++.|+.    +     ..+.+||..+.++..+..+.........+.+  +++.++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5677777765    2     4688999988877766554433222223333  46666666533     35889999888


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ++...-...........+.+  ++++++.|+.+     ..+.+||+.+.. |.....+ .........+.+  ++++++.
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~-p~~r~~~~~~~~--~~~iyv~  221 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE-WRMITAM-NTIRSGAGVCVL--HNCIYAA  221 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE-EEECCCC-SSCCBSCEEEEE--TTEEEEE
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe-EeeCCCC-CCccccceEEEE--CCEEEEE
Confidence            76544321111112222222  56777777654     357777776543 3222222 111122223333  6778888


Q ss_pred             eeCC-----CeEEEEec
Q 016982          162 TSTD-----GKCRVFST  173 (379)
Q Consensus       162 ~~~d-----~~i~v~d~  173 (379)
                      |+.+     ..+.+||+
T Consensus       222 GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          222 GGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             CCBCSSSBCCCEEEEET
T ss_pred             eCCCCCCccceEEEEeC
Confidence            8764     45888886

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.68  E-value=0.019  Score=48.44  Aligned_cols=105  Identities=13%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe---ecCCCceeEEEECCC---CCEEEEEeC-C-----CeEE
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI---LRLNRAALCVQWSPK---ENKFAVGSG-A-----KTVC  123 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-d-----~~v~  123 (379)
                      ....++|.|+|+++++ ..++.|.+++  +++.......   .........++++|+   +..|.++.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4579999999985554 6679999988  4442222111   112356789999998   555554443 2     5677


Q ss_pred             EEEeecCCce---eEEEEEee--cCCcCEEEEEEcCCCcEEEEee
Q 016982          124 ICYYEQENNW---WVSKLIRK--RHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus       124 i~~~~~~~~~---~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .++.......   .+...+..  ........++|.|+|.++++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            7776643210   11111210  1112336899999998777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.65  E-value=0.021  Score=48.19  Aligned_cols=106  Identities=8%  Similarity=-0.022  Sum_probs=60.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe---ecCCCceeEEEECCC---CCEEEEEeC----C----C
Q 016982           55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI---LRLNRAALCVQWSPK---ENKFAVGSG----A----K  120 (379)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d----~  120 (379)
                      .....++|.|+|+++ .+..++.|++++. +++ .....+   .........++++|+   +..|.++..    +    .
T Consensus        29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYL-VTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEETTEEE-EEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcCCCeEE-EEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345799999999744 4566799999873 443 221111   112356889999997   444544432    2    4


Q ss_pred             eEEEEEeecCC-ce----eEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982          121 TVCICYYEQEN-NW----WVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus       121 ~v~i~~~~~~~-~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .|..++..... ..    .+...+..........++|.|||.++++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            56666665431 00    011112111112346799999998777654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.56  E-value=0.016  Score=49.27  Aligned_cols=148  Identities=11%  Similarity=0.145  Sum_probs=94.2

Q ss_pred             CCCcEEEEEecCCeEEEEEecCC-ceEEEEEecc--CCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce--------
Q 016982           20 PDHAMVAFCPNNNEVHIYKLIQE-KWEKLHVLQK--HDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW--------   88 (379)
Q Consensus        20 ~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~--------   88 (379)
                      .+|..++++ .++.||.-++..+ .++.+. ++.  .-..|..+..+|+|++||..+. ..|.|-.+..+..        
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~-~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLN-FSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEE-CTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEe-cCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            455555555 3467888787743 233322 221  1225788999999999998764 5788888773310        


Q ss_pred             ----eeeEEeec----CCCceeEEEECCC---CCEEEEEeCCCeEEEEEeecCCceeEEEEEe--------ecCCcCEEE
Q 016982           89 ----VPTLVILR----LNRAALCVQWSPK---ENKFAVGSGAKTVCICYYEQENNWWVSKLIR--------KRHDSSVTS  149 (379)
Q Consensus        89 ----~~~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--------~~~~~~v~~  149 (379)
                          ...+.+..    ...+|..+.|||-   +..|++-..|+.|++||+......+.  .+.        ......|.+
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE--EESCCCSEEESCSSCCCEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc--chhccccccCCCcccceEEE
Confidence                11222211    2467999999994   56899999999999999986332111  120        122367889


Q ss_pred             EEEcCCCcEEEE--eeCCCeEEEEe
Q 016982          150 VAWHPNNVFLAT--TSTDGKCRVFS  172 (379)
Q Consensus       150 ~~~~p~~~~l~~--~~~d~~i~v~d  172 (379)
                      ++|.+++-.|..  .+++|.|+-..
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEEES
T ss_pred             EEEcCCCcEEEEEecCCCCCEEEEC
Confidence            999998754544  44778876544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.53  E-value=0.027  Score=49.28  Aligned_cols=109  Identities=9%  Similarity=0.074  Sum_probs=62.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeec------CCCceeEEEECCC---CCEEEEEeC--------
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILR------LNRAALCVQWSPK---ENKFAVGSG--------  118 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~--------  118 (379)
                      ....|+|.|+|+++++-...+.|++++..++.......+..      .......|+|+|+   +..|.+...        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            45799999999877765444578888766554332222111      2356679999995   444444432        


Q ss_pred             -----CCeEEEEEeecCCc-----eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982          119 -----AKTVCICYYEQENN-----WWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus       119 -----d~~v~i~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                           ...|.-+++.....     ..+...+..........++|.|||+++++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 12455555543211     01111121122234689999999987777553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.53  E-value=0.027  Score=46.25  Aligned_cols=197  Identities=12%  Similarity=0.025  Sum_probs=106.5

Q ss_pred             EEeCCCCcEEEEEecC--------------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe--C--CCe
Q 016982           16 HAWSPDHAMVAFCPNN--------------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS--H--DRN   77 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~d--------------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--d~~   77 (379)
                      --++++|++|+.....              ..|+..++.+.+.+.+..   .  .  +..|++++++|+...  .  +..
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~--~--~~~~s~~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D--P--CIYASLIGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S--C--EEEEEEETTEEEEEEESSSSCEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C--C--ccEEEEeCCEEEEEeecCCCCce
Confidence            4467888888877553              356666666653233221   1  1  236788899988776  2  344


Q ss_pred             EEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC
Q 016982           78 SYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        78 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  156 (379)
                      |..-++..... ..+  ..+..    ..++|+++.|+..+. ...|...+++...    .+.+ ..  +... ..+.|++
T Consensus       131 Iy~~~~dGs~~-~~l--t~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~----~~~l-~~--~~~~-~~~~P~g  195 (302)
T 3s25_A          131 LYRIRIDGEEK-KKI--KNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS----EALF-YD--CNCY-KPVVLDD  195 (302)
T ss_dssp             EEEEETTSCCC-EEE--ESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE----EEEE-EC--SCEE-EEEEEET
T ss_pred             EEEEECCCCCe-EEE--eCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC----EEEE-eC--CCcc-ceeeecC
Confidence            55556654442 222  22222    456778888887765 4566665555443    2333 22  2222 3456888


Q ss_pred             cEEEEeeCCC--eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc--CCCeEEEEE
Q 016982          157 VFLATTSTDG--KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG--HNSMIYFVD  232 (379)
Q Consensus       157 ~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~d~~i~v~d  232 (379)
                      .+|+.....+  .|..-++                   .+.....+..  ..+  ..|+|++.+|..++  ..+.|...+
T Consensus       196 ~~iy~t~~~~~~~I~~~~l-------------------dG~~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~  252 (302)
T 3s25_A          196 TNVYYMDVNRDNAIVHVNI-------------------NNPNPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVK  252 (302)
T ss_dssp             TEEEEEEGGGTTEEEEECS-------------------SSCCCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEE
T ss_pred             CEEEEEEcCCCcEEEEEEC-------------------CCCCeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEE
Confidence            8887765433  4444443                   1222233322  223  34788899888763  346777777


Q ss_pred             CCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982          233 DVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       233 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                      +....+  +.+...  .+.  .+++.+.+|.
T Consensus       253 ~DG~~r--~~l~~~--~~~--~i~i~~d~Iy  277 (302)
T 3s25_A          253 NDGTGF--KELAKG--EFC--NINVTSQYVY  277 (302)
T ss_dssp             TTSCCC--EEEEES--CEE--EEEECSSEEE
T ss_pred             CCCCcc--EEeeCC--ccc--eEEEeCCEEE
Confidence            766542  233211  232  3455566665

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.52  E-value=0.027  Score=46.23  Aligned_cols=198  Identities=12%  Similarity=0.086  Sum_probs=107.3

Q ss_pred             CCCCcEEEEEe--cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC--------------CeEEEEe
Q 016982           19 SPDHAMVAFCP--NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD--------------RNSYVWN   82 (379)
Q Consensus        19 s~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~vw~   82 (379)
                      +.++..|....  .++.|+..+.+....+.+..-     .  +--+++++++|+.+...              ..|+..+
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~-----~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND-----T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE-----E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC-----c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            34666666653  245666666555432333221     1  33457889888777543              3577777


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe--CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS--GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      +.+.+....   .  ...  ...|+++++.|+...  .++.-.||-++....  ..+.+ ..+..    .+++|+++.|.
T Consensus        95 ~dg~~~~~l---~--~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs--~~~~l-t~~~~----~~~~~~g~~iy  160 (302)
T 3s25_A           95 RNGHGSTVL---D--PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE--EKKKI-KNHYL----FTCNTSDRYFY  160 (302)
T ss_dssp             TTSCCCEEE---E--CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC--CCEEE-ESSCC----CCSEEETTEEE
T ss_pred             CCCCcceEe---e--cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC--CeEEE-eCCCc----eEeeEECCEEE
Confidence            776652221   1  111  236777888888876  344455555544321  12333 23322    45677888887


Q ss_pred             EeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC--CeEEEEECCCCC
Q 016982          161 TTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN--SMIYFVDDVGPS  237 (379)
Q Consensus       161 ~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--~~i~v~d~~~~~  237 (379)
                      ..+. ...|.+.++.                   +.....+..  +... ..++|++.+|+.....  ..|...++....
T Consensus       161 ~t~~g~~~Iy~~~l~-------------------g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          161 YNNPKNGQLYRYDTA-------------------SQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EECTTTCCEEEEETT-------------------TTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             EEeCCCceEEEEECC-------------------CCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            6655 5667766651                   222222211  1222 2356999998876543  367777776654


Q ss_pred             ceeeeeeeecCCeeeEEEecCCcEEEEE
Q 016982          238 PLAQNVAFRDLPLRDVLFVSEKMVIGVG  265 (379)
Q Consensus       238 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~  265 (379)
                      .  +.+.  ...+  ..|+|++..|.-+
T Consensus       219 ~--~~Lt--~~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          219 P--VVLT--EANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             C--EECS--CSCE--EEEEEETTEEEEE
T ss_pred             e--EEEe--CCCc--ceEEECCCEEEEE
Confidence            3  3332  2223  3488888887743

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.50  E-value=0.02  Score=50.09  Aligned_cols=108  Identities=9%  Similarity=0.048  Sum_probs=64.5

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc------CCCceEEEEEcCC---CCEEEEEeC-------
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK------HDQIVSGIDWSVR---SNRIVTVSH-------   74 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~-------   74 (379)
                      .....++|.|+|+++++-...+.|++++..++....+..+..      .......|+|+|+   +..|..+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            456799999999977765444578888765554444444432      2356779999996   555544432       


Q ss_pred             ------CCeEEEEeccCC--ce---eeeEEeec--CCCceeEEEECCCCCEEEEEeC
Q 016982           75 ------DRNSYVWNQEGS--EW---VPTLVILR--LNRAALCVQWSPKENKFAVGSG  118 (379)
Q Consensus        75 ------d~~i~vw~~~~~--~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~  118 (379)
                            ...|.-++...+  ..   ...+....  .......|.|.|||.++++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  134666665432  11   11121111  1234688999999987776543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.49  E-value=0.032  Score=46.28  Aligned_cols=192  Identities=8%  Similarity=0.089  Sum_probs=112.5

Q ss_pred             CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCC----CC---EEEEEe-C--CCeEEEEEeecCCceeE
Q 016982           66 SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK----EN---KFAVGS-G--AKTVCICYYEQENNWWV  135 (379)
Q Consensus        66 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~v~i~~~~~~~~~~~  135 (379)
                      ..+++.....+-+.+||+ +++.+..+.    .+.+..+..-|+    |+   ++++.. .  +++|.+|+++.....  
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~----~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~--  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYN----TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT--  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEEC----CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC--
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEcc----CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc--
Confidence            356666677788999999 565444431    255666666552    22   223333 3  578999988533210  


Q ss_pred             EEEEee-----cCC-cCEEEEEE--cCC-Cc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982          136 SKLIRK-----RHD-SSVTSVAW--HPN-NV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS  205 (379)
Q Consensus       136 ~~~~~~-----~~~-~~v~~~~~--~p~-~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
                      ...+..     ... ..+..+++  +|. ++ ++++...+|.+..|++...    ...       ..+.+.+++|... +
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~----~~g-------~~~~~lVR~f~lg-s  180 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKAD----KNG-------YISGKKVRAFKMN-S  180 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEEC----TTS-------CEEEEEEEEEECS-S
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeC----CCC-------cccceEEEEecCC-C
Confidence            122200     011 45666777  664 43 6777788899999987210    000       0245667777653 4


Q ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCC----Cceeeeee-ee-cCCeeeEEEe--cCCc-EEE-EE-eCCCeEEEE
Q 016982          206 WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP----SPLAQNVA-FR-DLPLRDVLFV--SEKM-VIG-VG-FDCNPMVFA  274 (379)
Q Consensus       206 ~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~-~~-~~~i~~~~~s--~~~~-~l~-~~-~d~~~~i~~  274 (379)
                      .+-.+...+....|+.+-++..|..|+....    ..++..+. ++ ...+..|+.-  ++++ +|+ ++ .++...+|+
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            6788889998888999988877777774421    12333322 11 2357778774  4555 555 44 355677777


Q ss_pred             ec
Q 016982          275 AD  276 (379)
Q Consensus       275 ~~  276 (379)
                      ..
T Consensus       261 r~  262 (355)
T 3amr_A          261 RQ  262 (355)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.45  E-value=0.036  Score=45.93  Aligned_cols=142  Identities=8%  Similarity=0.046  Sum_probs=71.5

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC----CC-------eEEEEeccCCceeee
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH----DR-------NSYVWNQEGSEWVPT   91 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~-------~i~vw~~~~~~~~~~   91 (379)
                      .+++.|+.  .+..||..++++... .+..............++..++.|+.    ++       .+.+||..+.++...
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~   93 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL   93 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred             hhhhcccc--ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence            44555553  589999999877663 33321112222233456777777773    11       277889888876543


Q ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCC-------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           92 LVILRLNRAALCVQWSPKENKFAVGSGA-------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      -...........+.+  ++..++.|+.+       ..+.+||..+.. |.....+ .........+.  .++++++.|+.
T Consensus        94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~-p~~r~~~~~~~--~~~~iyv~GG~  167 (318)
T 2woz_A           94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAK-WSEVKNL-PIKVYGHNVIS--HNGMIYCLGGK  167 (318)
T ss_dssp             SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTE-EEEECCC-SSCEESCEEEE--ETTEEEEECCE
T ss_pred             CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCC-EeECCCC-CCcccccEEEE--ECCEEEEEcCC
Confidence            221111111122222  56777777753       235566655443 2222111 11111111222  36777777764


Q ss_pred             ------CCeEEEEec
Q 016982          165 ------DGKCRVFST  173 (379)
Q Consensus       165 ------d~~i~v~d~  173 (379)
                            -..+.+||+
T Consensus       168 ~~~~~~~~~~~~yd~  182 (318)
T 2woz_A          168 TDDKKCTNRVFIYNP  182 (318)
T ss_dssp             ESSSCBCCCEEEEET
T ss_pred             CCCCCccceEEEEcC
Confidence                  235888886

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.44  E-value=0.044  Score=46.69  Aligned_cols=243  Identities=13%  Similarity=0.161  Sum_probs=148.2

Q ss_pred             EEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEee
Q 016982           16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVIL   95 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~   95 (379)
                      .-.+|..+.+|.=. ...+.|||+++.  ..+....- ..+|.-=.|-.+. .|+..+ +..|+-|++.+.. .+...+.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K--~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s-~P~kvFd  143 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES-QPVKMFD  143 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSC-CCEEEEE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHh--hhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCC-Cchhhee
Confidence            44577777777664 579999999987  45554443 3356666775443 454444 4679999997632 2222223


Q ss_pred             cC----CCceeEEEECCCCCEEEEEeC-------CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC---cEEEE
Q 016982           96 RL----NRAALCVQWSPKENKFAVGSG-------AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN---VFLAT  161 (379)
Q Consensus        96 ~~----~~~v~~~~~~~~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~  161 (379)
                      .|    ...|.....+++.++++..+-       .|.+.+|..+.+.    .+.+ .+|......+...-+.   +.+..
T Consensus       144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~----sQ~i-eGhaa~F~~~~~~g~~~~~~lf~f  218 (494)
T 1bpo_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPI-EGHAASFAQFKMEGNAEESTLFCF  218 (494)
T ss_dssp             CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC----EEEE-CCSEEEEEEEECTTCSSEEEEEEE
T ss_pred             cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc----cchh-eeeeeeeEEEecCCCCCCceEEEE
Confidence            33    356777778899998776542       4678888877765    5666 7887666555443221   34554


Q ss_pred             eeC---CCeEEEEeccccccccccccCCCccCCcccceEEEee----cCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          162 TST---DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD----LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       162 ~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      +..   .+.++|.++....    ...+      ...+....+.    ...+-..++..++.-..+..-..-|.+++||+.
T Consensus       219 a~r~~~g~kLhi~Ei~~~~----~~~~------~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle  288 (494)
T 1bpo_A          219 AVRGQAGGKLHIIEVGTPP----TGNQ------PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (494)
T ss_dssp             EECSTTCCEEEEEECSCCC----TTCC------CCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             EEecCCCcEEEEEEcCCCc----cCCC------CccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence            444   3788888762110    0111      1112122221    123445678888887788888899999999999


Q ss_pred             CCCceeeeeeeecCCeeeEEEec-CCcEEEEEeCCCeEEEEecCCCcE
Q 016982          235 GPSPLAQNVAFRDLPLRDVLFVS-EKMVIGVGFDCNPMVFAADETGIW  281 (379)
Q Consensus       235 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~d~~~~i~~~~~~~~~  281 (379)
                      ++..+ ..-.-...+|..-+-.. .+-+++....|.+.-...++....
T Consensus       289 Tgt~i-~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          289 TGTCI-YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             TCCEE-EEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             cceee-eeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence            98743 44444455555444443 355666777777777776666543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.41  E-value=0.017  Score=48.84  Aligned_cols=103  Identities=15%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             CCcEEEEEec-C---------CeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCC--------------
Q 016982           21 DHAMVAFCPN-N---------NEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHD--------------   75 (379)
Q Consensus        21 ~~~~l~~~~~-d---------g~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------------   75 (379)
                      ++++++.|+. +         ..+.+||..+.+|..+..+. .......++.  .+++.++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence            5677777765 2         46899999998777765544 2111222222  456677777754              


Q ss_pred             -------------------------CeEEEEeccCCceeeeEEeecCCCce-eEEEECCCCCEEEEEeC------CCeEE
Q 016982           76 -------------------------RNSYVWNQEGSEWVPTLVILRLNRAA-LCVQWSPKENKFAVGSG------AKTVC  123 (379)
Q Consensus        76 -------------------------~~i~vw~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~------d~~v~  123 (379)
                                               ..+.+||..+.++...-.. ...... .+++.. ++++++.|+.      ...+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~  220 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES-PWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVF  220 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC-SSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC-CCCCcccccEEEE-CCEEEEEeeecCCCcccCceE
Confidence                                     5789999999887665332 211111 222222 5666677653      23466


Q ss_pred             EEEe
Q 016982          124 ICYY  127 (379)
Q Consensus       124 i~~~  127 (379)
                      .||+
T Consensus       221 ~~d~  224 (357)
T 2uvk_A          221 ELDF  224 (357)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6766

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.40  E-value=0.011  Score=48.88  Aligned_cols=146  Identities=8%  Similarity=0.117  Sum_probs=77.6

Q ss_pred             CCCcEEEEEec----C-------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC--------CeEEE
Q 016982           20 PDHAMVAFCPN----N-------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD--------RNSYV   80 (379)
Q Consensus        20 ~~~~~l~~~~~----d-------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v   80 (379)
                      .++.+++.|+.    +       ..+.+||..++++..+..+.........+.+  ++..++.|+.+        ..+.+
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~  121 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMC  121 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEE
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEE
Confidence            46778888873    1       1378889988877665444322211122222  45566666632        35889


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-C-----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-A-----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      ||..+.++...-.. .....-.+++. -+++.++.|+. +     ..+.+||..+.. |.....+ ........++.+  
T Consensus       122 ~d~~~~~W~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~-p~~r~~~~~~~~--  195 (315)
T 4asc_A          122 YDRLSFKWGESDPL-PYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-WKELAPM-QTARSLFGATVH--  195 (315)
T ss_dssp             EETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE-EEECCCC-SSCCBSCEEEEE--
T ss_pred             ECCCCCcEeECCCC-CCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe-EEECCCC-CCchhceEEEEE--
Confidence            99998876544321 11111122222 35667777765 2     357777776553 3222222 111112222333  


Q ss_pred             CCcEEEEeeCCC-----eEEEEec
Q 016982          155 NNVFLATTSTDG-----KCRVFST  173 (379)
Q Consensus       155 ~~~~l~~~~~d~-----~i~v~d~  173 (379)
                      ++++++.|+.++     .+.+||+
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~  219 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSI  219 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEET
T ss_pred             CCEEEEEeccCCCCccceEEEEEC
Confidence            678888887654     4777776

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.39  E-value=0.0054  Score=46.99  Aligned_cols=184  Identities=14%  Similarity=0.082  Sum_probs=91.0

Q ss_pred             CCEEEEEeCCCeEEEEeccCCc---eeeeEEeecC--CCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCc--e-eEEE
Q 016982           66 SNRIVTVSHDRNSYVWNQEGSE---WVPTLVILRL--NRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN--W-WVSK  137 (379)
Q Consensus        66 ~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~-~~~~  137 (379)
                      ...|+....| +++.=...++.   +.......+.  =..+..++|+|+|.+.++  .+|.++-.+..+...  | ....
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3456666666 55544443332   1111111222  246789999999997777  567655444322110  0 0012


Q ss_pred             EEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC
Q 016982          138 LIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN  217 (379)
Q Consensus       138 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  217 (379)
                      .+-..--....++.|.|+|.+.++  .||.|.-++.-....      ..+   ......+.  ...=..+..|.|.|+|.
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~------~~W---l~~a~~vg--~~gw~~~~~lff~p~G~  147 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDT------DNW---IARATEVG--SGGWSGFKFLFFHPNGY  147 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTT------CCH---HHHSEEEE--CSSGGGEEEEEECTTSC
T ss_pred             EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCC------Cce---eccccEec--cCCCCceEEEEECCCce
Confidence            220111122578999999988877  568887665300000      000   00011111  11124578999999999


Q ss_pred             EEEEEcCCCeEEEEECCCCCc-----eeeeee-eecCCeeeEEEecCCcEEEEEeCC
Q 016982          218 TLAYVGHNSMIYFVDDVGPSP-----LAQNVA-FRDLPLRDVLFVSEKMVIGVGFDC  268 (379)
Q Consensus       218 ~l~~~~~d~~i~v~d~~~~~~-----~~~~~~-~~~~~i~~~~~s~~~~~l~~~~d~  268 (379)
                      +.+..  |+.++-........     ....+- ..-..-..+.|.++|.+.++. ++
T Consensus       148 Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~-~g  201 (236)
T 1tl2_A          148 LYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ-GG  201 (236)
T ss_dssp             EEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE-TT
T ss_pred             EEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe-CC
Confidence            88776  77754332221110     001111 111123446688888888766 54

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.38  E-value=0.034  Score=46.88  Aligned_cols=96  Identities=10%  Similarity=0.085  Sum_probs=54.0

Q ss_pred             CCcEEEEEec-CCeEEEEEecC--CceEEEEEec-cCCCceEEEEEcCCCCEEEEEeC-C---------CeEEEEeccCC
Q 016982           21 DHAMVAFCPN-NNEVHIYKLIQ--EKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSH-D---------RNSYVWNQEGS   86 (379)
Q Consensus        21 ~~~~l~~~~~-dg~i~i~~~~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~vw~~~~~   86 (379)
                      ++++++.|+. ...+.+||..+  .+|..+..+. .......++.+  +++.++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            6677777764 35789999874  6677665554 22222222222  4556666665 2         35889999988


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGA  119 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (379)
                      ++.......+....-.++.. .++++++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            76554322211111112222 467777888754

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.21  E-value=0.019  Score=47.62  Aligned_cols=147  Identities=10%  Similarity=0.120  Sum_probs=76.7

Q ss_pred             CCCCcEEEEEec----CC-------eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-------CeEEE
Q 016982           19 SPDHAMVAFCPN----NN-------EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-------RNSYV   80 (379)
Q Consensus        19 s~~~~~l~~~~~----dg-------~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v   80 (379)
                      ..++.+++.|+.    ++       .+.+||..+.++..+..+.........+.+  +++.++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            346777888873    11       277889888877665444432222222222  46666777653       24888


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC------CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG------AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      ||..+.++...-.. .....-.++.. .++++++.|+.      -..+.+||..+.. |.....+ .........+.+  
T Consensus       132 yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~-p~~r~~~~~~~~--  205 (318)
T 2woz_A          132 YDPVAAKWSEVKNL-PIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-WKDLAPM-KTPRSMFGVAIH--  205 (318)
T ss_dssp             EETTTTEEEEECCC-SSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE-EEEECCC-SSCCBSCEEEEE--
T ss_pred             EeCCCCCEeECCCC-CCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE-EEECCCC-CCCcccceEEEE--
Confidence            99988876543211 11111112222 35667777764      2347777776653 3222222 111122222333  


Q ss_pred             CCcEEEEeeCCC-----eEEEEec
Q 016982          155 NNVFLATTSTDG-----KCRVFST  173 (379)
Q Consensus       155 ~~~~l~~~~~d~-----~i~v~d~  173 (379)
                      +++.++.|+.++     .+.+||+
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~  229 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDL  229 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEET
T ss_pred             CCEEEEEcCcCCCCccceEEEEEC
Confidence            677788876532     4667775

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.19  E-value=0.03  Score=51.97  Aligned_cols=151  Identities=11%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             CCCcEEEEEecC----CeEEEEEecCCceEEEE-Ee-----ccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEec
Q 016982           20 PDHAMVAFCPNN----NEVHIYKLIQEKWEKLH-VL-----QKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQ   83 (379)
Q Consensus        20 ~~~~~l~~~~~d----g~i~i~~~~~~~~~~~~-~~-----~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~   83 (379)
                      .++.+++.|+.+    ..+.+||..+++|..+. .+     ......-..+.+..+++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456777788753    46899999998888776 32     2111122233332267677777643      34889999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC--eEEEEEeecCCceeEEEE---EeecCCcCEEEEEEcCC-Cc
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK--TVCICYYEQENNWWVSKL---IRKRHDSSVTSVAWHPN-NV  157 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~-~~  157 (379)
                      .+.++...-.. .....-.+++.-.++++++.|+.++  .+.+||..+.. |.....   . ........++.+..+ ++
T Consensus       476 ~t~~W~~~~~~-p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~-p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          476 KTREWSMIKSL-SHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEF-FQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             TTTEEEECCCC-SBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGG-GGSCCBSCEEEEETTTTE
T ss_pred             CCCcEEECCCC-CCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCC-CCcccceeEEEEeCCCCE
Confidence            98876554321 1122222333324788888887654  57777776653 322221   1 111122233555554 67


Q ss_pred             EEEEeeC--C-----CeEEEEec
Q 016982          158 FLATTST--D-----GKCRVFST  173 (379)
Q Consensus       158 ~l~~~~~--d-----~~i~v~d~  173 (379)
                      .++.|+.  +     ..+.+||+
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~  575 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKY  575 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEE
T ss_pred             EEEECCcCCCCCeeeCcEEEEEc
Confidence            7888876  2     35788886

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.13  E-value=0.15  Score=46.57  Aligned_cols=188  Identities=10%  Similarity=0.067  Sum_probs=110.4

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeEEeecCCCcee
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILRLNRAAL  102 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~v~  102 (379)
                      +|+.+. .+.|+..++.......+......-..+.+++|.+.+..|+.+. ..+.|+.+++.+.......  ...-..+.
T Consensus       319 ~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~--~~~~~~p~  395 (619)
T 3s94_A          319 LLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV--TAQIAHPD  395 (619)
T ss_dssp             EEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--CSSCSCCC
T ss_pred             EEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE--ECCCCCcC
Confidence            444443 3567777776543222211111123567899998766666555 5678999988765422222  22235677


Q ss_pred             EEEECCCCC-EEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee--CCCeEEEEeccccccc
Q 016982          103 CVQWSPKEN-KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS--TDGKCRVFSTFIKGVD  179 (379)
Q Consensus       103 ~~~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~i~v~d~~~~~~~  179 (379)
                      .+++.+.+. ++++-+..+.|.+.+++...    .+.+....-....++++.|....|....  ..+.|...++.     
T Consensus       396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~----~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-----  466 (619)
T 3s94_A          396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTM----RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-----  466 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-----
T ss_pred             ceEEecccCcEEEEeCCCCcEEEEeCCCCe----EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-----
Confidence            889987444 44554557889888776554    2333233445678999999744444333  23556655541     


Q ss_pred             cccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCC
Q 016982          180 IKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPS  237 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~  237 (379)
                                    +.....+ ...-...+.|++++++..|..+. ..+.|..+++....
T Consensus       467 --------------G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~  512 (619)
T 3s94_A          467 --------------GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTG  512 (619)
T ss_dssp             --------------SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             --------------CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence                          2222222 22234678999999777777664 45789999986654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.89  E-value=0.063  Score=52.95  Aligned_cols=244  Identities=12%  Similarity=0.153  Sum_probs=137.8

Q ss_pred             eCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecC
Q 016982           18 WSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL   97 (379)
Q Consensus        18 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~   97 (379)
                      .+|..+.+|.=. ..++.|||+++.  ..+....- ..+|.-=.|-.+. .|+..+ +..|.-|++.+.. .+...+..|
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k--~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s-~P~k~fdR~  145 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES-QPVKMFDRH  145 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHh--hhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCC-ccHHHHhcc
Confidence            467777776654 579999999886  33333332 3456667775443 343333 3579999997532 122111222


Q ss_pred             ----CCceeEEEECCCCCEEEEEe-------CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC--C-CcEEEEee
Q 016982           98 ----NRAALCVQWSPKENKFAVGS-------GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP--N-NVFLATTS  163 (379)
Q Consensus        98 ----~~~v~~~~~~~~~~~l~~~~-------~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~-~~~l~~~~  163 (379)
                          ...|..-..+++.++++..+       -.|.+.+|..+.+.    .+.+ .+|.+....+...-  . .+.+..+.
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~----sQ~i-egha~~F~~~~~~~~~~~~~l~~f~~  220 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPI-EGHAASFAQFKMEGNAEESTLFCFAV  220 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc----chhh-hHhHhhhheeccCCCCCCceEEEEEE
Confidence                35677777788888877544       35788898887764    4555 66765554444321  1 23333332


Q ss_pred             C---CCeEEEEeccccccccccccCCCccCCcccceEEEe---ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Q 016982          164 T---DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL---DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPS  237 (379)
Q Consensus       164 ~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~  237 (379)
                      .   .+.++|.++....    .+.+++     ..+.+..+   .....-..++..++.-..+..-..-|.+++||+.++.
T Consensus       221 ~~~~g~kLhi~Ei~~~~----~~~~~f-----~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          221 RGQAGGKLHIIEVGTPP----TGNQPF-----PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             ecCCCceEEEEecCCCc----cCCCCC-----ccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence            2   3688888762110    011110     01111111   1113334577888877777777889999999999986


Q ss_pred             ceeeeeeeecCCeeeEEEe-cCCcEEEEEeCCCeEEEEecCCCcEEE
Q 016982          238 PLAQNVAFRDLPLRDVLFV-SEKMVIGVGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       238 ~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~d~~~~i~~~~~~~~~~~  283 (379)
                      .+ ..-.....+|.-.+-. +.+-+++....|.+.-...++.....+
T Consensus       292 ~i-~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~y  337 (1630)
T 1xi4_A          292 CI-YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPY  337 (1630)
T ss_pred             hh-hhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhhh
Confidence            43 2222334444433333 345566677777777666666554443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.78  E-value=0.19  Score=41.98  Aligned_cols=115  Identities=11%  Similarity=0.048  Sum_probs=65.2

Q ss_pred             EeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe----ecCCCceeEEEECCC---CCEEEEE-e--C
Q 016982           49 VLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI----LRLNRAALCVQWSPK---ENKFAVG-S--G  118 (379)
Q Consensus        49 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~--~  118 (379)
                      .+...-.....|+|.|+|+++++--..|.|++++..+++......+    .........|+++|+   +..|.+. +  .
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3333344568999999998777655489999998766553222111    123456789999995   3344332 2  3


Q ss_pred             CCeEEEEEeecCC--------ceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982          119 AKTVCICYYEQEN--------NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus       119 d~~v~i~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ++.|.-|.+....        ...+...+.......-..+.|.|||.++++.+
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            3445445544311        11111222111122346799999998877755

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.73  E-value=0.071  Score=49.50  Aligned_cols=152  Identities=9%  Similarity=0.123  Sum_probs=87.4

Q ss_pred             CCcEEEEEecC------CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC--eEEEEeccCCceeeeE
Q 016982           21 DHAMVAFCPNN------NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR--NSYVWNQEGSEWVPTL   92 (379)
Q Consensus        21 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~   92 (379)
                      ++++++.|+.+      ..+.+||..+++|..+..+...... .+++...+++.++.|+.++  .+.+||..+.++...-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            67788888753      3588999999877776555432222 2333324677888887554  6999999998765543


Q ss_pred             E---eecCCCceeEEEECCC-CCEEEEEeC--C-----CeEEEEEeecCCc-----eeEEEEEeecCCcCEEEEEEcCCC
Q 016982           93 V---ILRLNRAALCVQWSPK-ENKFAVGSG--A-----KTVCICYYEQENN-----WWVSKLIRKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        93 ~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----~~v~i~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~  156 (379)
                      .   ..........+.+..+ ++.++.|+.  +     ..+..||+.+..-     |................+ ...++
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~  608 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPR  608 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETT
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCC
Confidence            2   1111122233555554 667777765  2     4578888877761     322222100111222223 33337


Q ss_pred             cEEEEeeCC--------CeEEEEecc
Q 016982          157 VFLATTSTD--------GKCRVFSTF  174 (379)
Q Consensus       157 ~~l~~~~~d--------~~i~v~d~~  174 (379)
                      ++++.|+.+        ..+.+||+.
T Consensus       609 ~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          609 KLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             EEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             EEEEECCccCCCCCCCCCeEEEEECC
Confidence            888888743        458888863

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.71  E-value=0.21  Score=41.80  Aligned_cols=198  Identities=12%  Similarity=0.118  Sum_probs=112.0

Q ss_pred             ceeEEEeCCCCcEEEEEe------------cCCeEEEEEecCC--ceEEEEEecc-----CCCceEEEEEcC--CCC-EE
Q 016982           12 CITCHAWSPDHAMVAFCP------------NNNEVHIYKLIQE--KWEKLHVLQK-----HDQIVSGIDWSV--RSN-RI   69 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~------------~dg~i~i~~~~~~--~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~l   69 (379)
                      ....+...|+|..+++++            .+|.|.++|.++.  +.+.+. +.+     ..-....+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            345677788876555542            6899999998743  223332 222     223566777765  353 45


Q ss_pred             EEEe-C--CCeEEEEeccCCc-eeeeEEeecC--CCceeEEEECCCCCEEEEEeC---C------------CeEEEEEee
Q 016982           70 VTVS-H--DRNSYVWNQEGSE-WVPTLVILRL--NRAALCVQWSPKENKFAVGSG---A------------KTVCICYYE  128 (379)
Q Consensus        70 ~~~~-~--d~~i~vw~~~~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~---d------------~~v~i~~~~  128 (379)
                      +.+. .  +.++.+|+++.+. ....+....+  -....++.+.++|.+.++...   |            ..=.+|.++
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            4443 2  4678888776542 1111211111  245788999999987776541   1            223444454


Q ss_pred             cCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccc--eEEEeecCCc
Q 016982          129 QENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE--QILQLDLSFS  205 (379)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  205 (379)
                      .++    .+.+ ...-..-+.++|+||++.|..+. ..+.|..|++.                 ..+.  ....+. ..+
T Consensus       210 ~~~----~~~~-~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~-----------------~~g~l~~~~~~~-~~g  266 (355)
T 3sre_A          210 PND----VRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH-----------------ANWTLTPLRVLS-FDT  266 (355)
T ss_dssp             TTC----CEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC-----------------TTSCEEEEEEEE-CSS
T ss_pred             CCe----EEEe-ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC-----------------CCCcEecCEEEe-CCC
Confidence            443    2222 22234568999999997766654 57889999872                 1111  112232 245


Q ss_pred             ceEEEEECC-CCCEEEEEcCC-CeEEEEEC
Q 016982          206 WAFGVKWSP-SGNTLAYVGHN-SMIYFVDD  233 (379)
Q Consensus       206 ~v~~~~~sp-~~~~l~~~~~d-~~i~v~d~  233 (379)
                      ..-.+++++ +|++.+++..+ +.|..|+.
T Consensus       267 ~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          267 LVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             CCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            678899999 59987766533 34444443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.71  E-value=0.014  Score=44.74  Aligned_cols=109  Identities=11%  Similarity=0.044  Sum_probs=62.5

Q ss_pred             cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec-CCcceEEEEECCCCCEEEEEc
Q 016982          145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-SFSWAFGVKWSPSGNTLAYVG  223 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~  223 (379)
                      ..+.+++|+|++.+.++  .+|.+.-.+......           +.-.+. -..+-. --.....+.|.|+|.+.++  
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~-----------~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--  104 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN-----------DNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--  104 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTT-----------CCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCc-----------cccccc-ccEecccccccceEEEECCCCCEEEe--
Confidence            46789999999987776  677655443200000           000011 111100 0111478999999998877  


Q ss_pred             CCCeEEEEECCCCCcee-----eee-eeecCCeeeEEEecCCcEEEEEeCCCe
Q 016982          224 HNSMIYFVDDVGPSPLA-----QNV-AFRDLPLRDVLFVSEKMVIGVGFDCNP  270 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~~~-----~~~-~~~~~~i~~~~~s~~~~~l~~~~d~~~  270 (379)
                      .||.|+-++-.+...-.     ..+ ..--..+..+.|.|+|.+.++. |+.+
T Consensus       105 ~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l  156 (236)
T 1tl2_A          105 SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF  156 (236)
T ss_dssp             ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred             CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence            56988877753322110     011 0011457889999999999988 7763

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.48  E-value=0.32  Score=40.92  Aligned_cols=108  Identities=6%  Similarity=0.017  Sum_probs=58.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE-----eecCCCceeEEEECCC---CCEEEEEe-C-------C
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV-----ILRLNRAALCVQWSPK---ENKFAVGS-G-------A  119 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~---~~~l~~~~-~-------d  119 (379)
                      ....|+|.|+|+.|+.+...+.|++++.. +.....+.     ..........++++|+   +..|.+.. .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            45799999999834455677999998853 32111110     0112345689999996   44444442 2       1


Q ss_pred             CeEEEEEeecCC-ceeEEEEEeec------CCcCEEEEEEcCCCcEEEEeeC
Q 016982          120 KTVCICYYEQEN-NWWVSKLIRKR------HDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus       120 ~~v~i~~~~~~~-~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ..|..+++.... .....+.+...      ....-..+.|.|||.++++.+.
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence            245555554331 11111211111      1112357999999976666543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.34  E-value=0.92  Score=44.76  Aligned_cols=222  Identities=9%  Similarity=0.038  Sum_probs=118.0

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCC------CCEEEEEeC-CCeEEEEecc
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR------SNRIVTVSH-DRNSYVWNQE   84 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-d~~i~vw~~~   84 (379)
                      .|...+.+.  .+++.+. ++.+.++++..++........ -...|.|+++.|.      +++++.|.. |++++++++.
T Consensus       515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            455555442  4566654 578888888866444443333 3568999999863      368899886 9999999998


Q ss_pred             CCceeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCeEEEEEeecC--CceeEEEEEeecCCcCEEEEEEcCCCcEEE
Q 016982           85 GSEWVPTLVILRLNRAALCVQWS--PKENKFAVGSGAKTVCICYYEQE--NNWWVSKLIRKRHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  160 (379)
                      +.+......+. ....+.++.+.  ....+|.+|-.||.+.-+.++..  ......... .+ ..++.-..+...+..-+
T Consensus       591 ~l~~~~~~~L~-~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~-LG-~~pv~L~~~~~~~~~~V  667 (1158)
T 3ei3_A          591 SFELLHKEMLG-GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT-LG-TQPTVLRTFRSLSTTNV  667 (1158)
T ss_dssp             TCCEEEEEECC-SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE-CC-SSCCEEEEEESSSCEEE
T ss_pred             CCCeEEEEECC-CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE-cC-CCceEEEEEeeCCceeE
Confidence            76644433321 12233444433  23457889999999877766542  211111112 23 23444444443443222


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEE-EeecCCcce-EEEEECCC--CCEEEEEcCCCeEEEEECCCC
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWA-FGVKWSPS--GNTLAYVGHNSMIYFVDDVGP  236 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~sp~--~~~l~~~~~d~~i~v~d~~~~  236 (379)
                      .+..+....+|.-                   .+.... .+..  ..+ ....|+..  ..-++..+ ++.++|..+...
T Consensus       668 ~a~s~rp~liy~~-------------------~~~l~~s~l~~--~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~  725 (1158)
T 3ei3_A          668 FACSDRPTVIYSS-------------------NHKLVFSNVNL--KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI  725 (1158)
T ss_dssp             EEESSSCEEEEES-------------------SSSEEEEEBSS--SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCS
T ss_pred             EEECCCCEEEEEc-------------------CCceEEeccCh--HHhceEeccCcccCCCcEEEEc-CCceEEEEeccc
Confidence            2233444444431                   111111 1111  112 22334331  22344443 456888877543


Q ss_pred             Cce-eeeeeeecCCeeeEEEecCCcEEE
Q 016982          237 SPL-AQNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       237 ~~~-~~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                      ... ++.+. -+..+..++++|+.+.++
T Consensus       726 ~~~~~~~ip-L~~Tprri~y~~~~~~~~  752 (1158)
T 3ei3_A          726 QKLHIRTVP-LYESPRKICYQEVSQCFG  752 (1158)
T ss_dssp             SSEEEEEEE-CSSEEEEEEEEGGGTEEE
T ss_pred             CCeeEEEEe-CCCCceEEEEcCCCCEEE
Confidence            322 22232 356788999999777554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.37  E-value=1.3  Score=38.76  Aligned_cols=108  Identities=8%  Similarity=-0.005  Sum_probs=59.8

Q ss_pred             cceeEEEeCCCCc-EEEEEecCCeEEEEEecCCc-eEEEEEec---------cCCCceEEEEEcCC----CCEEEEEeC-
Q 016982           11 QCITCHAWSPDHA-MVAFCPNNNEVHIYKLIQEK-WEKLHVLQ---------KHDQIVSGIDWSVR----SNRIVTVSH-   74 (379)
Q Consensus        11 ~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~-~~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~-   74 (379)
                      ...+.|+|.|+|. +|+++...|.|++++..... ...+..+.         ........|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4567899999996 45555678999999754321 01112221         11346788999996    333333221 


Q ss_pred             -C----------CeEEEEeccCC--------ceeeeEEee--cCCCceeEEEECCCCCEEEEEeC
Q 016982           75 -D----------RNSYVWNQEGS--------EWVPTLVIL--RLNRAALCVQWSPKENKFAVGSG  118 (379)
Q Consensus        75 -d----------~~i~vw~~~~~--------~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  118 (379)
                       +          ..|.-|.+..+        .....+...  ........|.|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          13444655421        111122211  11234578999999987776654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.27  E-value=0.54  Score=39.06  Aligned_cols=108  Identities=11%  Similarity=0.042  Sum_probs=63.7

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccC-CCceEEEEE--cCCCCEEEEE--eCCCeEEEEeccCCceeeeEEeec-
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH-DQIVSGIDW--SVRSNRIVTV--SHDRNSYVWNQEGSEWVPTLVILR-   96 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~-   96 (379)
                      .++++++.||.|+-+|..++  +....+... ..++....-  .+.+..++.+  +.||.|..++..++.....+.... 
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG--~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNG--HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTT--EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCC--cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            47888899999999999888  566666543 122222110  0112234433  579999999988875443332211 


Q ss_pred             -CCCceeE---EEE-C----CCCCEEEEEeCCCeEEEEEeecCCc
Q 016982           97 -LNRAALC---VQW-S----PKENKFAVGSGAKTVCICYYEQENN  132 (379)
Q Consensus        97 -~~~~v~~---~~~-~----~~~~~l~~~~~d~~v~i~~~~~~~~  132 (379)
                       ...++..   ... .    ..+..+++|+.++.+...|..+++.
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence             1111111   000 0    0356788999999999989888873

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.25  E-value=0.19  Score=41.72  Aligned_cols=187  Identities=11%  Similarity=-0.022  Sum_probs=91.9

Q ss_pred             CEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEEC--C-CCCEEEEE-eCCCeEEEEEeecCCceeEEEEEe-e
Q 016982           67 NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWS--P-KENKFAVG-SGAKTVCICYYEQENNWWVSKLIR-K  141 (379)
Q Consensus        67 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~-~  141 (379)
                      ..++.++.||.|.-+|..+|+..-.+... ...++....-.  + ++..++.. +.||.|..++..++.... ...+. .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccc
Confidence            46788899999999999999755544321 11222221100  1 22333343 578999888876553110 00000 0


Q ss_pred             cCCcCEEE---EEE-c----CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC--cc-----
Q 016982          142 RHDSSVTS---VAW-H----PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF--SW-----  206 (379)
Q Consensus       142 ~~~~~v~~---~~~-~----p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----  206 (379)
                      ....++..   ... .    -.+..+++|+.+|.+...|+                  .+++.+.++....  +.     
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~------------------~tG~~~W~~~~~~~~~~~~~~~  150 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINM------------------LNGEIISAFGPGSKNGYFGSQS  150 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEEEEEEEEEET------------------TTCCEEEEESTTCBCC------
T ss_pred             eeccccccCCCceeecccccccCCEEEEEecCCEEEEEEC------------------CCCcEEEEEecCCCcccccccc
Confidence            11122221   000 0    03567888999999999986                  6777776664321  10     


Q ss_pred             eEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCCceeeeeee--e-cCCee-----eEEEecCCcEEEEEeCCCeEEE
Q 016982          207 AFGVKWS-----PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF--R-DLPLR-----DVLFVSEKMVIGVGFDCNPMVF  273 (379)
Q Consensus       207 v~~~~~s-----p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~-~~~i~-----~~~~s~~~~~l~~~~d~~~~i~  273 (379)
                      ..+....     ..+..|+.+..+..+.+.+ +++. . .....  . ...+.     +-..+.|+.++++..|+.+..+
T Consensus       151 e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~-W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~  227 (339)
T 2be1_A          151 VDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-S-YNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLAS  227 (339)
T ss_dssp             --------------CCEEEEEEEEEECEECC-TTSC-C-CCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEE
T ss_pred             cccccccccccccCCCeEEEecceEEEEEEC-CCCC-e-EEEecccccccccccccccccccccCCcEEEECCCCEEEEE
Confidence            0011110     1245677777777777766 3332 1 11110  0 00000     0111234666667777777666


Q ss_pred             Eec
Q 016982          274 AAD  276 (379)
Q Consensus       274 ~~~  276 (379)
                      +..
T Consensus       228 d~~  230 (339)
T 2be1_A          228 DLD  230 (339)
T ss_dssp             CST
T ss_pred             ECC
Confidence            654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.22  E-value=2.1  Score=40.27  Aligned_cols=224  Identities=11%  Similarity=0.068  Sum_probs=124.4

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..|.++....+|. |-.|+.+ -+..||..+..+..  ........|.++.. .++ .|..++.+ -+..++..+++...
T Consensus        63 ~~i~~i~~d~~g~-lWigT~~-Gl~~yd~~~~~f~~--~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~  135 (758)
T 3ott_A           63 TRIYCGVIIDNTY-LYMGTDN-GILVYNYRADRYEQ--PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTS  135 (758)
T ss_dssp             SCEEEEEEETTTE-EEEEETT-EEEEEETTTTEECC--CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEE
T ss_pred             ceEEEEEEcCCCc-EEEEeCC-CeEEEeCCCCEEEC--cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEE
Confidence            4688887777664 5556555 47899988763322  11112235776654 345 45556655 58888987765322


Q ss_pred             eEEe--ecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec-----CCcCEEEEEEcCCCcEEEEee
Q 016982           91 TLVI--LRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR-----HDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        91 ~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ....  ......|.++....++.+.+ ++.+ -+..++.....    ...+...     ....|.++...+++..|-.|+
T Consensus       136 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt  209 (758)
T 3ott_A          136 FDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGK----FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT  209 (758)
T ss_dssp             ECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTE----EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE
T ss_pred             eccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCc----eEEecCCCccccccceeEEEEEECCCCEEEEEE
Confidence            1000  01234678888877777554 4544 46666654443    1222111     123488888877666544455


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      . +-+..+|.                  .+.+ +..+ ......|.++...++|.+.+.. . +-+.+++..+.. . ..
T Consensus       210 ~-~Gl~~~~~------------------~~~~-~~~~~~l~~~~i~~i~~d~~g~lWigT-~-~Gl~~~~~~~~~-~-~~  265 (758)
T 3ott_A          210 E-GYLFQYFP------------------STGQ-IKQTEAFHNNSIKSLALDGNGDLLAGT-D-NGLYVYHNDTTP-L-QH  265 (758)
T ss_dssp             E-EEEEEEET------------------TTTE-EEEEEEEEEEEEEEEEECTTCCEEEEE-T-TEEEEECCTTSC-C-EE
T ss_pred             C-CCCeEEcC------------------CCCe-EEeccCCCCCeEEEEEEcCCCCEEEEe-C-CceeEEecCCCc-E-EE
Confidence            4 45777875                  1221 1111 1113458888888888866543 3 457888866543 1 22


Q ss_pred             ee--------eecCCeeeEEEecCCcEEEEEeCCCeEE
Q 016982          243 VA--------FRDLPLRDVLFVSEKMVIGVGFDCNPMV  272 (379)
Q Consensus       243 ~~--------~~~~~i~~~~~s~~~~~l~~~~d~~~~i  272 (379)
                      +.        .....|.++....+|.+.++...| +.+
T Consensus       266 ~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~  302 (758)
T 3ott_A          266 IIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISL  302 (758)
T ss_dssp             ECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEE
T ss_pred             EEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-ccc
Confidence            21        112347888888888877766544 543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.19  E-value=1.2  Score=44.48  Aligned_cols=143  Identities=13%  Similarity=0.018  Sum_probs=86.1

Q ss_pred             CeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           76 RNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      .+|.|-|+..+..+.+     .+-..-+...+|..+.+|.-. ..++.|+|+++...   .+..  ....+|.-=.|-.+
T Consensus        48 ~~vvIidl~~~~~~~r-----rpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k---lks~--~~~e~VvfWkWis~  116 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIR-----RPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK---MKAH--TMTDDVTFWKWISL  116 (1630)
T ss_pred             ceEEEEECCCCCCccc-----ccccchhhccCCCcceEEEec-CCeEEEeehHHhhh---hccc--ccCCCceEEEecCC
Confidence            4688888887652211     122233455788888777765 68899999988763   2222  23456666677644


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC----CcceEEEEECCCCCEEEEEc-------C
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS----FSWAFGVKWSPSGNTLAYVG-------H  224 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~-------~  224 (379)
                       +.|+..+ +..|..|++..                 ...+++.|..|    ...|..-..+++.++++..+       -
T Consensus       117 -~~l~lVT-~~aVyHW~~~~-----------------~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v  177 (1630)
T 1xi4_A          117 -NTVALVT-DNAVYHWSMEG-----------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRV  177 (1630)
T ss_pred             -CeeEEEc-CCeEEEeccCC-----------------CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcc
Confidence             3444443 45799999731                 12222223222    34577777788888877543       3


Q ss_pred             CCeEEEEECCCCCceeeeeeeecCCe
Q 016982          225 NSMIYFVDDVGPSPLAQNVAFRDLPL  250 (379)
Q Consensus       225 d~~i~v~d~~~~~~~~~~~~~~~~~i  250 (379)
                      .|.+.+|......  .+.+.+|-...
T Consensus       178 ~G~mQLyS~er~~--sQ~iegha~~F  201 (1630)
T 1xi4_A          178 VGAMQLYSVDRKV--SQPIEGHAASF  201 (1630)
T ss_pred             cceeeeeeccccc--chhhhHhHhhh
Confidence            4789999876643  35666665443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.96  E-value=1.5  Score=37.33  Aligned_cols=155  Identities=12%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             CcceeEEEeCC--CCcEEEEEecCC----eEEEEEecCCceEEEEE---ecc--------CCCceEEEEEcCC--CCEEE
Q 016982           10 AQCITCHAWSP--DHAMVAFCPNNN----EVHIYKLIQEKWEKLHV---LQK--------HDQIVSGIDWSVR--SNRIV   70 (379)
Q Consensus        10 ~~~i~~~~~s~--~~~~l~~~~~dg----~i~i~~~~~~~~~~~~~---~~~--------~~~~v~~~~~~~~--~~~l~   70 (379)
                      ...|.+|++.|  .+.+.+ ++..|    .|...+-....++.+..   +..        ....|.++++.|.  ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            35799999998  444444 44444    34433222233444321   111        1125778999872  45566


Q ss_pred             EEeCCCeEEEEeccCCceeeeEEee----------------cCCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCce
Q 016982           71 TVSHDRNSYVWNQEGSEWVPTLVIL----------------RLNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNW  133 (379)
Q Consensus        71 ~~~~d~~i~vw~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~  133 (379)
                      .+...+.|...+-....+.......                .....+.+|.+.|. ...+.++..++.|... .+.+..|
T Consensus       133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s-~DgG~tW  211 (394)
T 3b7f_A          133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFES-TDAGTDW  211 (394)
T ss_dssp             EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEE-SSTTSSC
T ss_pred             EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEE-CCCCCCc
Confidence            6555565555432223332221000                11235788999883 4455555544544332 2233333


Q ss_pred             eEEEE-EeecC--------CcCEEEEEEcCC-CcEEEEeeCCC
Q 016982          134 WVSKL-IRKRH--------DSSVTSVAWHPN-NVFLATTSTDG  166 (379)
Q Consensus       134 ~~~~~-~~~~~--------~~~v~~~~~~p~-~~~l~~~~~d~  166 (379)
                      ..... ....+        ...+.++.++|. ...|..+...+
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            22110 00000        134889999986 35566665444

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.90  E-value=1.9  Score=38.26  Aligned_cols=245  Identities=11%  Similarity=0.042  Sum_probs=134.5

Q ss_pred             EEEEecCCeEEEEEecCCceEEEEEeccCC-------------------------CceE--EEEEc---CCCCEEEEEe-
Q 016982           25 VAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-------------------------QIVS--GIDWS---VRSNRIVTVS-   73 (379)
Q Consensus        25 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-------------------------~~v~--~~~~~---~~~~~l~~~~-   73 (379)
                      |.+|+..|.|+|+-+.+.  +.+..+.-..                         +...  .+++.   -||++|+.-. 
T Consensus        73 f~SgG~sG~v~v~G~PSm--R~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk  150 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK  150 (638)
T ss_dssp             EEECGGGCCEEEEEETTT--EEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred             EeecCcCceEEEEecCCc--ceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence            678889999999999886  4544432110                         1111  22332   2467777766 


Q ss_pred             CCCeEEEEeccCCceeeeEEeecCCCceeEEEEC--CCCCEEEEEeC-------CCeEEEEEeecCCceeEEEEEeecC-
Q 016982           74 HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWS--PKENKFAVGSG-------AKTVCICYYEQENNWWVSKLIRKRH-  143 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~~~~-  143 (379)
                      .+..|..-+++..++...+. .+....+..++|-  |+..+++.+++       ||..  ..++..+...+...+ ... 
T Consensus       151 an~RvAri~l~~~~~d~Ii~-iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~i-D~~t  226 (638)
T 3sbq_A          151 ANSRVARIRLDIMKCDKMIT-VPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAI-DAET  226 (638)
T ss_dssp             TTTEEEEEETTTTEEEEEEE-CTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEE-ETTT
T ss_pred             CCcceEEEECCcEeeceeEe-CCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEE-cCCc
Confidence            45678888888888766665 4566788888886  67778888765       2221  000111111011111 111 


Q ss_pred             ---------CcCEEEEEEcCCCcEEEEeeCCC---------------eEEEEeccccccccccc-----c--CCCccCCc
Q 016982          144 ---------DSSVTSVAWHPNNVFLATTSTDG---------------KCRVFSTFIKGVDIKEK-----K--EGTSSDTK  192 (379)
Q Consensus       144 ---------~~~v~~~~~~p~~~~l~~~~~d~---------------~i~v~d~~~~~~~~~~~-----~--~~~~~~~~  192 (379)
                               .+....+...+++++.++.+.+.               .+.++|...-+.-.+..     .  .....+.+
T Consensus       227 m~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~  306 (638)
T 3sbq_A          227 MEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGR  306 (638)
T ss_dssp             CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred             cEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccc
Confidence                     12223345567777877765432               36677754211001110     0  01111111


Q ss_pred             c----c-ceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCC-----------c-eeeeeeeecCCeeeEE
Q 016982          193 F----G-EQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPS-----------P-LAQNVAFRDLPLRDVL  254 (379)
Q Consensus       193 ~----~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~-----------~-~~~~~~~~~~~i~~~~  254 (379)
                      .    + ....-+.. ......+..+|||++++.++ .+.++.++|+.+-.           . +..... -+......+
T Consensus       307 ~~~~~~~~~~~~iP~-pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~  384 (638)
T 3sbq_A          307 KKDGKDSKFTRYVPV-PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTT  384 (638)
T ss_dssp             CBTTBCCSSEEEEEE-SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEE
T ss_pred             cccccCCceEEEEeC-CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEE
Confidence            1    1 11222222 23356789999999988776 57899999987421           1 112222 244567899


Q ss_pred             EecCCcEEEEE-eCCCeEEEEecC
Q 016982          255 FVSEKMVIGVG-FDCNPMVFAADE  277 (379)
Q Consensus       255 ~s~~~~~l~~~-~d~~~~i~~~~~  277 (379)
                      |.++|....+- -|..+.-|+.+.
T Consensus       385 Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          385 FDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             ECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             ECCCCceEeeeeecceEEEEeccH
Confidence            99999544433 577888888653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.20  E-value=2.9  Score=37.21  Aligned_cols=203  Identities=9%  Similarity=0.035  Sum_probs=107.1

Q ss_pred             CCcEEEEEe-cCCeEEEEEecCCceEEEEEeccCCCceEEEEEc--CCCCEEEEEeC-------CCeE---------EEE
Q 016982           21 DHAMVAFCP-NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS--VRSNRIVTVSH-------DRNS---------YVW   81 (379)
Q Consensus        21 ~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~-------d~~i---------~vw   81 (379)
                      ||++|+.-. .+..|-..+++.-+...+..++ ....+..++|-  |+..+++.++.       ||..         .+|
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f  219 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY  219 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence            667777765 3667878888775434444444 34578888886  67788887764       2221         111


Q ss_pred             ---eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC---------------CeEEEEEe----------------
Q 016982           82 ---NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA---------------KTVCICYY----------------  127 (379)
Q Consensus        82 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------~~v~i~~~----------------  127 (379)
                         |.++.+....+..   .+....+...+++.+.++.+.+               ..+.++|+                
T Consensus       220 ~~iD~~tm~v~~Qv~v---~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~  296 (638)
T 3sbq_A          220 NAIDAETMEMAFQVIV---DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG  296 (638)
T ss_dssp             EEEETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             EEEcCCccEEEEEEEc---CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence               1122221111111   2233344556677777766521               11333333                


Q ss_pred             ---------ecCC--ceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEeccccccccccccCCCccCCcccc
Q 016982          128 ---------EQEN--NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGE  195 (379)
Q Consensus       128 ---------~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  195 (379)
                               +...  .......+  .-......+..+|||++++.++. +.++.++|+.-...-+.. .    .......
T Consensus       297 g~gv~ViD~~~~~~~~~~~~~~i--P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~-k----~~~~~~~  369 (638)
T 3sbq_A          297 DSKTPVLDGRKKDGKDSKFTRYV--PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG-K----LADPRDV  369 (638)
T ss_dssp             TCCCCEEECSCBTTBCCSSEEEE--EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT-C----CSCGGGG
T ss_pred             CCCeeEEccccccccCCceEEEE--eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc-c----ccCcccc
Confidence                     2200  00011111  12223457889999998887664 789999997311000000 0    0001112


Q ss_pred             eEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC
Q 016982          196 QILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       196 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~  235 (379)
                      .+...+. .-.....+|.++|....+---|..|.-|++..
T Consensus       370 ~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          370 IVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             eEeeccC-CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence            2233332 33467889999996555666899999999754

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=91.94  E-value=5.2  Score=33.94  Aligned_cols=144  Identities=9%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             cEEEEEecCCeEEEEEecC--CceEEEEEeccCCCceEEEEEcC-CCCEEEEEeCCC----eEEEEeccCCceeeeEEe-
Q 016982           23 AMVAFCPNNNEVHIYKLIQ--EKWEKLHVLQKHDQIVSGIDWSV-RSNRIVTVSHDR----NSYVWNQEGSEWVPTLVI-   94 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~----~i~vw~~~~~~~~~~~~~-   94 (379)
                      ..|.+|+..| +.+++...  ..+...... .....|.+|++.| +...|..+...+    .|...+-....+...... 
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccc
Confidence            4566777766 66666543  346554322 2245799999998 233444444444    344332222222221100 


Q ss_pred             --ec--------CCCceeEEEECC-C-CCEEEEEeCCCeEEEEEeecCCceeEEEEEee----------------cCCcC
Q 016982           95 --LR--------LNRAALCVQWSP-K-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRK----------------RHDSS  146 (379)
Q Consensus        95 --~~--------~~~~v~~~~~~~-~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----------------~~~~~  146 (379)
                        ..        ....|.++++.| + ...+.++...+.|... -+.+..|...... .                .....
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S-~DgG~tW~~~~~~-~~~p~~~~~~~~~~~g~~~~~~  178 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS-TDHGASWEPVAGF-NDHPMRRAWTGGEQDGTPDGPK  178 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE-SSTTSBCEECHHH-HTCTTHHHHHCCC----CCCCE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE-cCCCCCeEECcCc-cCCccccccccccccCCCCCCc
Confidence              00        112577888987 2 4556666555555332 1233333322111 0                01235


Q ss_pred             EEEEEEcCC-CcEEEEeeCCCeEEE
Q 016982          147 VTSVAWHPN-NVFLATTSTDGKCRV  170 (379)
Q Consensus       147 v~~~~~~p~-~~~l~~~~~d~~i~v  170 (379)
                      +.++.++|. ...+..+..++.|..
T Consensus       179 i~~i~~d~~~~~~l~vg~~~ggl~~  203 (394)
T 3b7f_A          179 MHSILVDPRDPKHLYIGMSSGGVFE  203 (394)
T ss_dssp             EEEEEECTTCTTCEEEEEETBEEEE
T ss_pred             eeEEEECCCCCCEEEEEECCCCEEE
Confidence            788999884 344444544444443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.06  E-value=6.4  Score=31.65  Aligned_cols=223  Identities=9%  Similarity=-0.049  Sum_probs=110.9

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP   90 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~   90 (379)
                      ..|..++.... ..++. . ||.|+.|-..... +. -........|..++..... .++. . ||.|..|-........
T Consensus        24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~G-ql-g~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNG-QL-TMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSS-TT-SCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCC-CC-CCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC
Confidence            35777776543 23333 4 8999999765421 00 0001112356667665433 2333 4 8999999765432111


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEE
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV  170 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v  170 (379)
                      .  ...-...|..++...+  ..+.-. +|.|+.|-.+......  ..  ......|..++.-..  +.+.-. ||.+..
T Consensus        96 ~--P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg--~~--~~~~~~i~~i~~G~~--~~~~l~-~G~v~~  163 (282)
T 3qhy_B           96 V--PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT--VP--AEAQSGVTALDGGVY--TALAVK-NGGVIA  163 (282)
T ss_dssp             C--CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS--CC--GGGGSSEEEEEECSS--EEEEEE-TTEEEE
T ss_pred             C--CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC--CC--ccCCCCeEEEEcccC--EEEEEE-CCEEEE
Confidence            0  0112346777776544  333334 8999998765533211  01  223345666665433  222233 799999


Q ss_pred             EeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCe
Q 016982          171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPL  250 (379)
Q Consensus       171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i  250 (379)
                      |-...                 .++.-... .....|..++...+.. ++.  .+|.|+.|-.....++-.... ....|
T Consensus       164 wG~n~-----------------~gqlg~p~-~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~-~~~~v  221 (282)
T 3qhy_B          164 WGDNY-----------------FGQTTVPA-EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTE-ALSGV  221 (282)
T ss_dssp             EECCT-----------------TSTTSCCG-GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGG-GGSSC
T ss_pred             ecCCC-----------------CCCCCCce-ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcc-cCCCc
Confidence            86421                 01100000 0023466666554333 333  489999997555433311111 12346


Q ss_pred             eeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          251 RDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       251 ~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                      ..++-... ..++.. ++.++.|-.+.
T Consensus       222 ~~i~~G~~-h~~al~-~g~v~~wG~n~  246 (282)
T 3qhy_B          222 SAIASGEW-YSLALK-NGKVIAWGSSR  246 (282)
T ss_dssp             CEEEECSS-CEEEEE-TTEEEEESTTC
T ss_pred             eEEEcCCC-EEEEEE-CCEEEEecCCC
Confidence            66664433 344444 88888876554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=89.89  E-value=8.9  Score=33.06  Aligned_cols=216  Identities=11%  Similarity=0.060  Sum_probs=128.0

Q ss_pred             CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCC
Q 016982           31 NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKE  110 (379)
Q Consensus        31 dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  110 (379)
                      +..|.|.|+.++.....+.+.+     .+.-.+|..+.|+.-. ..++.++|+++.+....+..   ..+|.-=.|-.+ 
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~A-----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~---~e~VvfWkWis~-  116 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISL-  116 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCC-----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEEEET-
T ss_pred             CCeEEEEECCCCCcceeccccc-----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec---CCCceEEEecCC-
Confidence            3478888888753222222222     2345688887776655 67899999999986665543   456666666533 


Q ss_pred             CEEEEEeCCCeEEEEEeecCCceeEEEEEeecC----CcCEEEEEEcCCCcEEEEeeC-------CCeEEEEeccccccc
Q 016982          111 NKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH----DSSVTSVAWHPNNVFLATTST-------DGKCRVFSTFIKGVD  179 (379)
Q Consensus       111 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~~~~~-------d~~i~v~d~~~~~~~  179 (379)
                      +.|+..+ +..|+.|++.....  ..+.+ ..|    ...|..-..+++.++++..+-       .|.+.+|..      
T Consensus       117 ~~l~lVT-~taVyHWsi~~~s~--P~kvF-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~------  186 (494)
T 1bpo_A          117 NTVALVT-DNAVYHWSMEGESQ--PVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV------  186 (494)
T ss_dssp             TEEEEEC-SSEEEEEESSSSCC--CEEEE-ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES------
T ss_pred             CeEEEEc-CCeeEEecccCCCC--chhhe-ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec------
Confidence            4555555 46899999875332  24444 333    356777778888888875442       467888875      


Q ss_pred             cccccCCCccCCcccceEEEeecCCcceEEEEECCC---CCEEEEEcC---CCeEEEEECCCCC---cee--eee--e--
Q 016982          180 IKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPS---GNTLAYVGH---NSMIYFVDDVGPS---PLA--QNV--A--  244 (379)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~---d~~i~v~d~~~~~---~~~--~~~--~--  244 (379)
                                   ..+..+.+++|......+.+.-+   ..+++.+..   .+.++|.++....   +..  +..  .  
T Consensus       187 -------------er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp  253 (494)
T 1bpo_A          187 -------------DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (494)
T ss_dssp             -------------TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             -------------cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC
Confidence                         34455667788666555544322   124444443   3789999985431   100  011  0  


Q ss_pred             --eecCCeeeEEEecCCcEE-EEEeCCCeEEEEecCCC
Q 016982          245 --FRDLPLRDVLFVSEKMVI-GVGFDCNPMVFAADETG  279 (379)
Q Consensus       245 --~~~~~i~~~~~s~~~~~l-~~~~d~~~~i~~~~~~~  279 (379)
                        ....-..++..++.-.++ +...-|.+++|+.....
T Consensus       254 pe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt  291 (494)
T 1bpo_A          254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  291 (494)
T ss_dssp             TTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             cccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence              012224466777654444 46777788888876654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.20  E-value=11  Score=31.84  Aligned_cols=215  Identities=10%  Similarity=0.005  Sum_probs=118.9

Q ss_pred             CcceeEEEe-CCCCcEEEEEec--C---CeEEEEEecCCc-----eEEE-EEecc-----CCCceEEEEEcCCCCEEEE-
Q 016982           10 AQCITCHAW-SPDHAMVAFCPN--N---NEVHIYKLIQEK-----WEKL-HVLQK-----HDQIVSGIDWSVRSNRIVT-   71 (379)
Q Consensus        10 ~~~i~~~~~-s~~~~~l~~~~~--d---g~i~i~~~~~~~-----~~~~-~~~~~-----~~~~v~~~~~~~~~~~l~~-   71 (379)
                      ..-.+.++. +.+++.+++--+  +   -++-..+.....     ...+ ..++.     +-..|..+...+.+++-+. 
T Consensus        25 n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLD  104 (381)
T 3q6k_A           25 NMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVD  104 (381)
T ss_dssp             GCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEE
T ss_pred             ccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEe
Confidence            345567888 688888887643  2   244444443110     0122 44433     1235778888877654332 


Q ss_pred             -Ee-------------CCCeEEEEeccCC--ceeeeEEeecC----CCceeEEEEC---CC----CCEEEEEe-CCCeEE
Q 016982           72 -VS-------------HDRNSYVWNQEGS--EWVPTLVILRL----NRAALCVQWS---PK----ENKFAVGS-GAKTVC  123 (379)
Q Consensus        72 -~~-------------~d~~i~vw~~~~~--~~~~~~~~~~~----~~~v~~~~~~---~~----~~~l~~~~-~d~~v~  123 (379)
                       |-             .--+|.+||+.++  +.+..+.+...    ......+.+.   |.    +.++..+. ....|.
T Consensus       105 tG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLI  184 (381)
T 3q6k_A          105 IGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALF  184 (381)
T ss_dssp             CSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEE
T ss_pred             CCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEE
Confidence             10             0125889999999  88887765322    3456777776   22    23333333 367899


Q ss_pred             EEEeecCCceeEEEEEe----------ec----CCcCEEEEEEcCC----CcEEEEeeCCCeEEEEeccccccccccccC
Q 016982          124 ICYYEQENNWWVSKLIR----------KR----HDSSVTSVAWHPN----NVFLATTSTDGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~----------~~----~~~~v~~~~~~p~----~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  185 (379)
                      ++|+.+++.|.+.....          .+    ....+..++.+|+    ++.|......+. ++|.+.+.  .++... 
T Consensus       185 Vydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~--~L~~~~-  260 (381)
T 3q6k_A          185 IYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTK--ELKQKG-  260 (381)
T ss_dssp             EEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHH--HHSSTT-
T ss_pred             EEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHH--HhhCcc-
Confidence            99998887543321100          00    1246788899987    667766655442 34443211  111111 


Q ss_pred             CCccCCcccceEEEee--cCCcceEEEEEC-CCCCEEEEEcCCCeEEEEECCC
Q 016982          186 GTSSDTKFGEQILQLD--LSFSWAFGVKWS-PSGNTLAYVGHNSMIYFVDDVG  235 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~--~~~~~v~~~~~s-p~~~~l~~~~~d~~i~v~d~~~  235 (379)
                             ....++.+-  +....-..++++ .+|.++++--....|..|+..+
T Consensus       261 -------~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          261 -------GKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             -------CCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             -------hhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence                   112222221  111234456776 5787777777889999999775

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.95  E-value=18  Score=33.94  Aligned_cols=232  Identities=10%  Similarity=0.019  Sum_probs=128.0

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccC----CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH----DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      ..|.++...++|.+.+ |+. +-+..|+..+++..... +...    ...|.++...+++..|-.++. +-+..++..++
T Consensus       146 ~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          146 NTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             SCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEEC-CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEec-CCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence            4578888887777655 444 45778887765332211 1111    224788888777765555554 45888898777


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEee-------cCCcCEEEEEEcCCCcEE
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRK-------RHDSSVTSVAWHPNNVFL  159 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~l  159 (379)
                      +.......  ....|.++....+|.+.+ |+. +-+.+++..+..    ...+..       -....|.++....+|.+-
T Consensus       222 ~~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~----~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW  293 (758)
T 3ott_A          222 QIKQTEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTP----LQHIIHDSRNIQSLTNNIIWNIFADQEHNIW  293 (758)
T ss_dssp             EEEEEEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSC----CEEECCCTTCTTSCSCSCEEEEEECTTCCEE
T ss_pred             eEEeccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCc----EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE
Confidence            54332211  234688888887776544 454 457777665543    122211       122458888887777644


Q ss_pred             EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-----ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-----DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       160 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      + |+..| +.++...                 ...+. ...     ......|.++.-..+|.+.+. ..+| +..++..
T Consensus       294 i-GT~~G-l~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~  351 (758)
T 3ott_A          294 L-GTDYG-ISLSRYN-----------------SALQF-IPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDP  351 (758)
T ss_dssp             E-EESSS-EEEECCC-----------------C-CEE-EEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCT
T ss_pred             E-EeCCc-ccccccC-----------------CceeE-EecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccc
Confidence            4 44556 5444310                 00000 000     011245888888888886654 4444 6666654


Q ss_pred             CCCc-eeeeee-------eecCCeeeEEEecCCcEEEEEeCCCeEEEEecC
Q 016982          235 GPSP-LAQNVA-------FRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADE  277 (379)
Q Consensus       235 ~~~~-~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~  277 (379)
                      ++.. ....+.       .....|.++.-.++|++.++. ++.+..++...
T Consensus       352 ~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~  401 (758)
T 3ott_A          352 AGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYAT  401 (758)
T ss_dssp             TSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTT
T ss_pred             ccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCC
Confidence            4211 111111       012347788877888887766 56777776544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.23  E-value=14  Score=32.16  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=60.1

Q ss_pred             ceEEEEEcCCCC-EEEEEeCCCeEEEEeccCCce-eeeEEee---------cCCCceeEEEECCC----CCEEEEEeC--
Q 016982           56 IVSGIDWSVRSN-RIVTVSHDRNSYVWNQEGSEW-VPTLVIL---------RLNRAALCVQWSPK----ENKFAVGSG--  118 (379)
Q Consensus        56 ~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~-~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~--  118 (379)
                      .-..|+|.|+|. .|+++...|.|++++...... .....+.         ........|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            347899999995 455567889999997543211 1111111         11356788999996    444333322  


Q ss_pred             C----------CeEEEEEeecC--------CceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982          119 A----------KTVCICYYEQE--------NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus       119 d----------~~v~i~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                      +          ..|.-|.+...        ....+...........-..|.|.|||+++++.+..+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          12333444321        111122211112223457899999998877766543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.91  E-value=26  Score=33.89  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=32.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI   94 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~   94 (379)
                      .+.+++..++..++++-+.|+++++|++.+++++....+
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            466777778888999999999999999999987776644

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=85.48  E-value=25  Score=33.21  Aligned_cols=155  Identities=12%  Similarity=0.104  Sum_probs=77.0

Q ss_pred             CcceeEEEeCCC-CcEEEEEecCCeEEEEEecCCceEEEEEecc----CCCceEEEEEcCCC-CEEEEEeCCCe----EE
Q 016982           10 AQCITCHAWSPD-HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK----HDQIVSGIDWSVRS-NRIVTVSHDRN----SY   79 (379)
Q Consensus        10 ~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~-~~l~~~~~d~~----i~   79 (379)
                      ...|.+|+++|. ...+.+++..+.|...+-....|+.+.....    ....|.++++.|.. +.++.+..+..    -.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            468999999995 3556666666766655544444555322111    12369999999853 44444432211    23


Q ss_pred             EEec-cCCc-eeeeEEeec------CCCceeEEEECCC-CCEEEEEeCCCeEEEEEeecCCceeEEEEEee--cCCcCEE
Q 016982           80 VWNQ-EGSE-WVPTLVILR------LNRAALCVQWSPK-ENKFAVGSGAKTVCICYYEQENNWWVSKLIRK--RHDSSVT  148 (379)
Q Consensus        80 vw~~-~~~~-~~~~~~~~~------~~~~v~~~~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~--~~~~~v~  148 (379)
                      ||.- +.++ +........      ....+..++++|. .+.+..+...+.|. ...+.++.|........  .....+.
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~~  172 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGYT  172 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCEE
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCeE
Confidence            3433 3332 222211000      0113567888874 45566665444432 22333454543221100  1124578


Q ss_pred             EEEEcCCC-cEEEEeeCC
Q 016982          149 SVAWHPNN-VFLATTSTD  165 (379)
Q Consensus       149 ~~~~~p~~-~~l~~~~~d  165 (379)
                      .+.++|.. ..+..+..+
T Consensus       173 ~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          173 SVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEECTTSTTCEEEEESS
T ss_pred             EEEECCCCCCEEEEEEcC
Confidence            89998853 455555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-39
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  140 bits (353), Expect = 6e-39
 Identities = 150/373 (40%), Positives = 212/373 (56%), Gaps = 10/373 (2%)

Query: 5   AVHQFA-QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWS 63
           A H F  + I+CHAW+ D   +A CPNN+EVHIY+    KW ++H L++H+  V+G+DW+
Sbjct: 1   AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 64  VRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVC 123
             SNRIVT   DRN+YVW  +G  W PTLVILR+NRAA CV+W+P E KFAVGSG++ + 
Sbjct: 61  PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120

Query: 124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEK 183
           ICY+EQEN+WWV K I+K   S+V S+ WHPN+V LA  S D KCR+FS +IK V+ +  
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180

Query: 184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV 243
                S   FGE + +   S  W  GV +S +G+ +A+V H+S +    D         +
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA-DADKKMAVATL 239

Query: 244 AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAAD-ETGIWTFIKFLDERKTSSSGPKYGSQ 302
           A   LPL  V F++E  ++  G DC P++F  D   G  +F   LD  K SS        
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG----- 294

Query: 303 FSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK 362
              A  +     K      +  +       H N ++ I  L   G ++ ++F T+G+DG 
Sbjct: 295 -LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG-GKAKCSQFCTTGMDGG 352

Query: 363 IVTWDLESQEDLL 375
           +  WD+ S E  L
Sbjct: 353 MSIWDVRSLESAL 365

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (178), Expect = 5e-15
 Identities = 20/166 (12%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS 66
                 +   + +PD  +      +    ++ +   +         H+  ++ I +    
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNG 238

Query: 67  NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY 126
           N   T S D    +++    + + T     +      V +S        G       +  
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV-- 296

Query: 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFS 172
           ++         L    HD+ V+ +    + + +AT S D   ++++
Sbjct: 297 WDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 3e-13
 Identities = 27/227 (11%), Positives = 61/227 (26%), Gaps = 22/227 (9%)

Query: 6   VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR 65
             + A      +            ++ +        E  ++      H   V  +  +  
Sbjct: 136 SRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195

Query: 66  SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCIC 125
           +   V+ + D ++ +W+        T            + + P  N FA GS   T  + 
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLF 253

Query: 126 YYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKE 185
               +                +TSV++  +   L     D  C V+              
Sbjct: 254 DLRADQELMTY--SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW-------------- 297

Query: 186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD 232
               D    ++   L    +    +  +  G  +A    +S +   +
Sbjct: 298 ----DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.8 bits (143), Expect = 1e-10
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 38/242 (15%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS 66
           H     ++  +  P+   +     +  + ++++  +    +     H + V  +  +   
Sbjct: 98  HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--QTGYCVKTFTGHREWVRMVRPNQDG 155

Query: 67  NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVC--- 123
             I + S+D+   VW     E    L   R     +        +  +  +G++T     
Sbjct: 156 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 215

Query: 124 -------------ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRV 170
                        I  ++      +  L    HD+ V  V +H    F+ + + D   RV
Sbjct: 216 PGPFLLSGSRDKTIKMWDVSTGMCLMTL--VGHDNWVRGVLFHSGGKFILSCADDKTLRV 273

Query: 171 FSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYF 230
           +                  D K    +  L+    +   + +  +   +     +  +  
Sbjct: 274 W------------------DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 231 VD 232
            +
Sbjct: 316 WE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.6 bits (114), Expect = 5e-07
 Identities = 39/264 (14%), Positives = 82/264 (31%), Gaps = 10/264 (3%)

Query: 12  CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT 71
            +T   + P  +++     +  + ++    E  +    L+ H   V  I +      + +
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 72  VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN 131
            S D    +W+ +G E + T+     +     V   P  +     S  KT+ +   +   
Sbjct: 77  CSADMTIKLWDFQGFECIRTMH--GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 132 NWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVF--STFIKGVDIKEKKEGTSS 189
                      H   V  V  + +   +A+ S D   RV+  +T     +++E +     
Sbjct: 135 CVKT----FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 190 DTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLP 249
            +   E         + +   K    G  L     +  I   D      L   V   +  
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 250 LRDVLFVSEKMVIGVGFDCNPMVF 273
              +     K ++    D    V+
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVW 274

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 39/325 (12%), Positives = 86/325 (26%), Gaps = 55/325 (16%)

Query: 48  HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWS 107
           + L  H   V+ + +    + +V+ S D    VW+ E  ++  TL       +   + + 
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--GHTDSVQDISFD 68

Query: 108 PKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK 167
                 A      +  +     +   +        HD +V+SV+  PN   + + S D  
Sbjct: 69  HSGKLLAS----CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM 227
            +++                  + + G  +        W   V+ +  G  +A   ++  
Sbjct: 125 IKMW------------------EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166

Query: 228 IYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFL 287
           +           A+    R               I    + +    +             
Sbjct: 167 VRVWVVATKECKAELREHRH----------VVECISWAPESSYSSISEATGSETKKSGKP 216

Query: 288 DERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAG 347
                S S  K    +  + G                        H N +  +       
Sbjct: 217 GPFLLSGSRDKTIKMWDVSTGMCLMTLV----------------GHDNWVRGV-----LF 255

Query: 348 SSRITRFTTSGLDGKIVTWDLESQE 372
            S      +   D  +  WD +++ 
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKR 280

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 3e-10
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 25/187 (13%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIY-----KLIQEKWEKLHVLQKHDQIVSGID 61
                  T      D   +A    +  V ++      L++    +      H   V  + 
Sbjct: 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261

Query: 62  WSVRSNRIVTVSHDRNSYVWNQEGSE----------WVPTLVILRLNRAALCVQWSPKEN 111
           ++     +V+ S DR+  +WN + +               +  +      L V  +  + 
Sbjct: 262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 321

Query: 112 KFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVA------WHPNNVFLATTSTD 165
               GS  + V    +++++   +  L  + H +SV SVA        P     AT S D
Sbjct: 322 YILSGSKDRGVLF--WDKKSGNPLLML--QGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 166 GKCRVFS 172
            K R++ 
Sbjct: 378 CKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 5e-10
 Identities = 30/231 (12%), Positives = 63/231 (27%), Gaps = 13/231 (5%)

Query: 13  ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV 72
           I    +SPD   +A    +  + I+        +  V+                +    V
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWD----IENRKIVMILQGHEQDIYSLDYFPSGDKLV 179

Query: 73  SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN 132
           S   +  V   +      +L +   +               A GS  + V +   E    
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239

Query: 133 WWVSKLIRKR---HDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS 189
                   +    H  SV SV +  +   + + S D   ++++            +  S 
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ------NANNKSDSK 293

Query: 190 DTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA 240
               G   +       +   V  + +   +     +  + F D    +PL 
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 7e-06
 Identities = 30/279 (10%), Positives = 67/279 (24%), Gaps = 32/279 (11%)

Query: 12  CITCHAWSPDHAMVA---------------FCPNNNEVHIYKLIQEKWEKLHVLQKHDQI 56
            + C  +S D   +A                               +          D  
Sbjct: 64  VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123

Query: 57  VSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVG 116
           +  + +S     + T + DR   +W+ E  + V  L     +  +L    S  +     G
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 117 SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIK 176
                        +       L     D   T      +  ++A  S D   RV+ +   
Sbjct: 184 ------DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS--- 234

Query: 177 GVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP 236
                   E      +   +           + V ++  G ++     +  +   +    
Sbjct: 235 --------ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 286

Query: 237 SPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAA 275
           +  + +               +  V+ V    N     +
Sbjct: 287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 36/282 (12%), Positives = 77/282 (27%), Gaps = 10/282 (3%)

Query: 101 ALCVQWSPKENKFAV-GSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL 159
              +    +    A+         +          V       H S V  V +  +  +L
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 160 ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL 219
           AT   +   +V+      +  +   +  ++             S  +   V +SP G  L
Sbjct: 78  ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 220 AYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG 279
           A    + +I   D      +               F S   ++    D    ++      
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196

Query: 280 IWTFIKFLDERKTSSSGPKYGSQF---SEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNC 336
               +   D   T +  P  G      S         S+ G   + ++S    G  H + 
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256

Query: 337 INCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH 378
           +  +       +       +  LD  +  W+L++  +  +  
Sbjct: 257 VYSV-----VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 38/325 (11%), Positives = 83/325 (25%), Gaps = 23/325 (7%)

Query: 65  RSNRIVTVSHDRNSYVWN-QEGSEWVPTLV-ILRLNRAALCVQWSPKENKFAVGSGAKTV 122
                +    +    ++N     E    L   L       CV++S      A G    T 
Sbjct: 27  SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQ 86

Query: 123 CICYYEQE-------------NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR 169
                +               +   ++       D  + SV + P+  FLAT + D   R
Sbjct: 87  VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 146

Query: 170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIY 229
           ++    + + +  +       +          +S S    V+          +  +    
Sbjct: 147 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206

Query: 230 FVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDE 289
                      + +A   L     ++ SE   +    D         +  +++ +   D 
Sbjct: 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266

Query: 290 RKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSS 349
           +   S       +                 +   E +       V  +        A + 
Sbjct: 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV--------ATTQ 318

Query: 350 RITRFTTSGLDGKIVTWDLESQEDL 374
                 +   D  ++ WD +S   L
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPL 343

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 23/158 (14%), Positives = 54/158 (34%), Gaps = 10/158 (6%)

Query: 12  CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVT 71
               ++   D   V     +  + ++ +  E    +H L  H  + SG++     N +V+
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDV--ETGNCIHTLTGHQSLTSGMELK--DNILVS 232

Query: 72  VSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN 131
            + D    +W+ +  + + TL        +        +N     S   TV +  ++ + 
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQG-PNKHQSAVTCLQFNKNFVITSSDDGTVKL--WDLKT 289

Query: 132 NWWVSKLIRKR---HDSSVTSVAWHPNNVFLATTSTDG 166
             ++  L+          V  +      +  A  S +G
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 41/219 (18%), Positives = 72/219 (32%), Gaps = 24/219 (10%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS 66
                         D   V     +  V ++    E    LH LQ H             
Sbjct: 132 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP--ETETCLHTLQGHTN--RVYSLQFDG 187

Query: 67  NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY 126
             +V+ S D +  VW+ E    + T         +L      K+N    G+   TV I  
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHT----LTGHQSLTSGMELKDNILVSGNADSTVKIWD 243

Query: 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEG 186
            +        +    +H S+VT + ++ N  F+ T+S DG  +++       D+K  +  
Sbjct: 244 IKTGQCLQTLQ-GPNKHQSAVTCLQFNKN--FVITSSDDGTVKLW-------DLKTGEFI 293

Query: 187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN 225
            +  T      L+   S    + ++ S +    A    N
Sbjct: 294 RNLVT------LESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 4/114 (3%)

Query: 11  QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV 70
                        ++     ++ V I+ + +       +   +    +        N ++
Sbjct: 216 HQSLTSGMELKDNILVSGNADSTVKIWDI-KTGQCLQTLQGPNKHQSAVTCLQFNKNFVI 274

Query: 71  TVSHDRNSYVWNQEGSEWVPTLVILRL---NRAALCVQWSPKENKFAVGSGAKT 121
           T S D    +W+ +  E++  LV L           ++ S  +   AVGS   T
Sbjct: 275 TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 15/166 (9%), Positives = 41/166 (24%), Gaps = 8/166 (4%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS 66
            QF       +                 +  +    +  +          +  + +    
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236

Query: 67  NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY 126
             +       N  V +    +      +       L ++++     F        +    
Sbjct: 237 EWLAVGMESSNVEVLHVNKPDKYQ---LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293

Query: 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFS 172
                    + + + +  SSV S     ++ ++ T S D K  V+ 
Sbjct: 294 TPYG-----ASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 31/226 (13%), Positives = 59/226 (26%), Gaps = 27/226 (11%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS 66
              +    C+A +            ++ +I          +   Q H    S ID S   
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195

Query: 67  NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY 126
            ++ T   D     W+         L           + + P     AVG  +  V + +
Sbjct: 196 TKLWTGGLDNTVRSWDLR---EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH 252

Query: 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEG 186
             + + +         H+S V S+ +     +  +T  D     +               
Sbjct: 253 VNKPDKYQ-----LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW--------------- 292

Query: 187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD 232
               T +G  I Q   S S       S     +     +      +
Sbjct: 293 ---RTPYGASIFQSKES-SSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 25/204 (12%), Positives = 59/204 (28%), Gaps = 25/204 (12%)

Query: 48  HVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE-----------WVPTLVILR 96
           +  + HD  +  +     ++  V+ S D    VW+ +  +           +V    +  
Sbjct: 8   NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65

Query: 97  LNRAALCVQWSPKENKFAVGSGAKTVCICYYEQEN------NWWVSKLIRKRHDSSVTSV 150
           ++      + + +    A  S +  +      +E+         +  L       S  ++
Sbjct: 66  VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 151 AWHPNNV-----FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS 205
            W  +N       L  T   G   ++       +        S   +    +        
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 206 WAFGVKWSPSGNTLAYVGHNSMIY 229
           +A  V  S  G  +A   +N  + 
Sbjct: 186 FATSVDISERG-LIATGFNNGTVQ 208

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 3e-06
 Identities = 35/283 (12%), Positives = 66/283 (23%), Gaps = 15/283 (5%)

Query: 101 ALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP--NNVF 158
              + + P  N  A   G      C  + ++             S VT+V + P   + +
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 159 LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT 218
           L +    GK  V+                 S++       +  +       + W   G  
Sbjct: 80  LCSGDESGKVIVW----------GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

Query: 219 LAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADET 278
           L  V       F   +                R      ++                   
Sbjct: 130 LCVV-GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ 188

Query: 279 GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG--VGNDAVESSRTRGGTHVNC 336
           G        D             +FS   G+          +     +S         + 
Sbjct: 189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248

Query: 337 INCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYHL 379
                 +         +F T G D  I  WD+ + + +  + L
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 21/169 (12%), Positives = 46/169 (27%), Gaps = 2/169 (1%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS 66
              A  I+  +W  +   +       +     +  +    L  +  H Q ++        
Sbjct: 112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171

Query: 67  NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA--LCVQWSPKENKFAVGSGAKTVCI 124
                   D  S V+ Q               + +    V++SP   +F +  G+     
Sbjct: 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 231

Query: 125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
           C+  +   +       +             ++   AT   D   RV+  
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 280

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 45  EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN-QEGSEWVPTLVILRLNRAALC 103
           + + + Q     +S I      + ++  S D +  V+     ++ V  L  LR     LC
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 104 VQWSPKENKFAVGSGAKTVCICYYEQENNWW 134
             +    +        +   +      +  +
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 11/93 (11%), Positives = 23/93 (24%), Gaps = 15/93 (16%)

Query: 139 IRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL 198
           I +     ++ +   P+   L  TS DG   V+           + +          +  
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY-------KFDIQAKNVDLLQSLRYK-- 56

Query: 199 QLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFV 231
                        +  + +   YVG        
Sbjct: 57  ------HPLLCCNFIDNTDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 29/241 (12%), Positives = 61/241 (25%), Gaps = 15/241 (6%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS 66
           +     I  +      A                      K                   S
Sbjct: 101 NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160

Query: 67  NRIVTVSHDRNSYVWNQEGSEWVPTLVILR--LNRAALCVQWSPKENKFAVGSGAKTVCI 124
           +R++   ++     +     E     +       +         ++  +A  S    V +
Sbjct: 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220

Query: 125 CYYEQENNWWVSKLIRK-----------RHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
            +++ + + + S                     V S+ + P + FL T  +DG    ++ 
Sbjct: 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280

Query: 174 FIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD 233
             +       K    S  K       L L+ S       +    T+    + S IY + D
Sbjct: 281 QTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIE--LNASSIYIIFD 338

Query: 234 V 234
            
Sbjct: 339 Y 339

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.9 bits (104), Expect = 8e-06
 Identities = 15/177 (8%), Positives = 35/177 (19%), Gaps = 18/177 (10%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW-----EKLHVLQKHDQIVSGID 61
                     A+  D   + +    +       +   +      K  V+       +   
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234

Query: 62  WSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL-----NRAALCVQWSPKENKFAVG 116
              RS       +D N            P    + +                    +   
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA 294

Query: 117 SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFST 173
                +          + V         +++T +    +   +     DGK   F  
Sbjct: 295 PEKGVLLK--------YDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 22/253 (8%), Positives = 50/253 (19%), Gaps = 34/253 (13%)

Query: 5   AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV 64
                          P             +H+Y +   K          +       +  
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---TENSHDYAPAFDA 188

Query: 65  RSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAA-----LCVQWSPKENKFAVGSGA 119
            S  +  +S+       ++    +   +V                +  P+      G   
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 120 KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWH---PNNVFLATTSTDGKCRVFSTFIK 176
                      N       +    +SS+   +         +       G    +     
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY----- 303

Query: 177 GVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVD-DVG 235
             D+K +K     +                   ++ S    T+     +  IY    +  
Sbjct: 304 --DVKTRKVTEVKN---------------NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

Query: 236 PSPLAQNVAFRDL 248
                     R L
Sbjct: 347 EDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 14/216 (6%), Positives = 45/216 (20%), Gaps = 15/216 (6%)

Query: 13  ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTV 72
           I       D  +           +  +   +  K    +++   V  +         V  
Sbjct: 45  IRYVRRGGDTKVAFIHGTREGDFLG-IYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 103

Query: 73  SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENN 132
           +        + E  +                +  + +   +              +  + 
Sbjct: 104 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163

Query: 133 WWVSKLIRK---RHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS 189
           + +           +S   + A+  ++  L   S           +            + 
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL-----------NF 212

Query: 190 DTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN 225
             +   +   + L        K  P   T     ++
Sbjct: 213 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 5e-05
 Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 2/166 (1%)

Query: 7   HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS 66
              +   +C A S D   VA    +++VH+YKL      ++  +    +I S    +  +
Sbjct: 133 VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 192

Query: 67  NRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICY 126
             + T    +          E   T           CV WSP   + A GS   +V +  
Sbjct: 193 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV-- 250

Query: 127 YEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFS 172
           +          +I+  H  S  +     N   + +   D   + ++
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 15/162 (9%), Positives = 43/162 (26%), Gaps = 15/162 (9%)

Query: 14  TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS 73
             +    D   +     +  + ++       E +  L  H + ++ + +      +V+ S
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNT--STCEFVRTLNGHKRGIACLQYR--DRLVVSGS 195

Query: 74  HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW 133
            D    +W+ E    +            L         +   G+    + +       + 
Sbjct: 196 SDNTIRLWDIECGACLRV----LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP 251

Query: 134 WVSKLIR-----KRHDSSVTSVAWHPNNVFLATTSTDGKCRV 170
                         H   V  + +      + ++S D    +
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILI 291

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 32/316 (10%), Positives = 80/316 (25%), Gaps = 19/316 (6%)

Query: 69  IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENK-FAVGSGAKTVCICYY 127
           I+  +      V + E       + I       +    +P     +A  + ++++     
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 128 E-QENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEG 186
              E    +     +    S+   A  P+   LA   +  +  +           +    
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT------HFEVQPTRV 117

Query: 187 TSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD---VGPSPLAQNV 243
              D +   +    + +      + W+  G+ L  +G +  +   +    V   P+    
Sbjct: 118 ALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176

Query: 244 AFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQF 303
           A        +   ++    GV            +    T  +         +G     + 
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236

Query: 304 SEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT-------T 356
                  +  +       A  +        +     I  +    S      +        
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL 296

Query: 357 SGLDGKIVTWDLESQE 372
            G  G +  +D E+ E
Sbjct: 297 GGALGDLAAYDAETLE 312

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 14/242 (5%), Positives = 46/242 (19%), Gaps = 30/242 (12%)

Query: 16  HAWSPDHAMVAFC-PNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH 74
                  A + F    ++      +           Q              +      S 
Sbjct: 129 IGNCASSACLLFFLFGSSAAAGLSV-----PGASDDQLTKSASCFHIHPGAAATHYLGSC 183

Query: 75  DRNSYVW----NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQE 130
             +            +  V        N ++   Q +         + +           
Sbjct: 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGA 243

Query: 131 NNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSS- 189
                       ++S   +  +      +     +    +    ++           +S 
Sbjct: 244 TMKAA----IDGNESGRKADNFRSAGFQMVAKLKNTD-GIMILTVEHSRSCLAAAENTSS 298

Query: 190 -DTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV--GHNSMIYFVD----------DVGP 236
                G+    +      +  +  +  G +  Y       ++   D          ++  
Sbjct: 299 VTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357

Query: 237 SP 238
            P
Sbjct: 358 GP 359

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 20/176 (11%), Positives = 44/176 (25%), Gaps = 13/176 (7%)

Query: 6   VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVR 65
           +          A S     VA             + +      +        S I  S  
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPS 173

Query: 66  SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQW---------SPKENKFAVG 116
              I          +++ +  E   +    R ++                  +E+  A G
Sbjct: 174 ETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233

Query: 117 SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFS 172
           S    + I   ++             H   V ++ W   +  L ++  D   + ++
Sbjct: 234 SLDTNIFIYSVKRPMKIIK---ALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.66
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.49
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.47
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.45
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.44
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.42
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.32
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.32
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.31
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.3
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.14
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.12
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.07
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.99
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.81
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.45
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.07
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.0
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.95
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.83
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.56
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.23
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.78
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.77
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.57
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.47
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.43
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.69
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.35
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.3
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.22
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.65
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.32
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.48
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.46
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.18
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.0
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.72
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.17
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	89.26
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	88.75
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	88.25
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.72

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-53  Score=364.37  Aligned_cols=362  Identities=40%  Similarity=0.743  Sum_probs=280.7

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCcee
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWV   89 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~   89 (379)
                      .++|+|++|+|||++||+|+.||.|+|||..+++...+..+.+|.++|.+++|+|++++|++++.|++|++||+.++...
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            58999999999999999999999999999998877888999999999999999999999999999999999999998877


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCR  169 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~  169 (379)
                      +......|...|.+++|+|+++.|++++.|+.+++|+++..............|...|.+++|+|++++|++++.|+.++
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence            77777788899999999999999999999999999999987764444444467889999999999999999999999999


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCC
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLP  249 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  249 (379)
                      +|++....................+..+.....|...|.+++|+|++++|++++.|+.|++||+.++. .+..+..|..+
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~  245 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM-AVATLASETLP  245 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT-EEEEEECSSCC
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc-ceeeeeccccc
Confidence            99986554444443333334445567788888999999999999999999999999999999998876 45778888999


Q ss_pred             eeeEEEecCCcEEEEEeCCCeEEEEecCC-CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccc
Q 016982          250 LRDVLFVSEKMVIGVGFDCNPMVFAADET-GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRT  328 (379)
Q Consensus       250 i~~~~~s~~~~~l~~~~d~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (379)
                      |.+++|+|++++|++|.|+.+.+|..+.. +.+.+...++........      .......|...+..+...........
T Consensus       246 v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (371)
T d1k8kc_         246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR------GLTARERFQNLDKKASSEGSAAAGAG  319 (371)
T ss_dssp             EEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------------CHHHHHHHCCCCC---------CC
T ss_pred             ceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccc------cccceeeEecccceeEEeccccccce
Confidence            99999999999999999999999887653 344433222211111100      00111222222222222222222333


Q ss_pred             cccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC-ccccccCCC
Q 016982          329 RGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES-QEDLLNYHL  379 (379)
Q Consensus       329 ~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~-~~~~~~~~~  379 (379)
                      ....|.+.|+++++++... .....|+|+|.||.|++||+++ .+.++.++|
T Consensus       320 ~~~~H~~~I~~i~~~~~~~-~~~~~~~T~g~Dg~v~iW~~~~~~~~~~~l~~  370 (371)
T d1k8kc_         320 LDSLHKNSVSQISVLSGGK-AKCSQFCTTGMDGGMSIWDVRSLESALKDLKI  370 (371)
T ss_dssp             CSSSSSSCEEEEEEEESTT-TSCSEEEEEETTSEEEEEEHHHHHHHCTTCCC
T ss_pred             ecccccCCEEEEEEeCCCC-cceEEEEEEcCCCeEEEEeCCcChhhhcCEec
Confidence            4467999999999665443 2335799999999999999987 555665553

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-45  Score=313.50  Aligned_cols=284  Identities=11%  Similarity=0.078  Sum_probs=240.5

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc---eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK---WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      .+|...|+|++|+|+|++||+|+ ||.|+|||+.+..   ........+|.+.|.+++|+|++++|++++.|+.|++||+
T Consensus        48 ~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~  126 (337)
T d1gxra_          48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccc
Confidence            47999999999999999999997 7999999997642   1234455679999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      .............|...+..++|+|++.++++++.|+.+++|++.+.+   ..... ..|...+.+++|+++++.+++++
T Consensus       127 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~---~~~~~-~~~~~~v~~l~~s~~~~~~~~~~  202 (337)
T d1gxra_         127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT---LVRQF-QGHTDGASCIDISNDGTKLWTGG  202 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc---ccccc-ccccccccccccccccccccccc
Confidence            876544455556788999999999999999999999999999998876   34444 78899999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV  243 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  243 (379)
                      .|+.+++||+                  ++++.+..+. +...|.+++|+|++++|++++.|+.+++||+.+...  ...
T Consensus       203 ~d~~v~i~d~------------------~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~  261 (337)
T d1gxra_         203 LDNTVRSWDL------------------REGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQL  261 (337)
T ss_dssp             TTSEEEEEET------------------TTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEE
T ss_pred             cccccccccc------------------ccceeecccc-cccceEEEEEcccccccceecccccccccccccccc--ccc
Confidence            9999999997                  5566666554 578899999999999999999999999999988763  345


Q ss_pred             eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccc
Q 016982          244 AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDA  322 (379)
Q Consensus       244 ~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (379)
                      ..|...|++++|+|++++|+ ++.|+.+++|+.........                                       
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~---------------------------------------  302 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ---------------------------------------  302 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred             cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE---------------------------------------
Confidence            56889999999999999887 66788999998765442211                                       


Q ss_pred             cccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          323 VESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       323 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                              ..|...|++++ |++++    ++|+|||.||+|+|||+
T Consensus       303 --------~~~~~~v~~~~-~s~d~----~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         303 --------SKESSSVLSCD-ISVDD----KYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --------EECSSCEEEEE-ECTTS----CEEEEEETTSCEEEEEE
T ss_pred             --------ccCCCCEEEEE-EeCCC----CEEEEEeCCCeEEEEEE
Confidence                    24788999999 77665    89999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-44  Score=299.99  Aligned_cols=286  Identities=16%  Similarity=0.192  Sum_probs=251.2

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..|.+|.++|++++|+|++++||+|+.||.|+|||+.++  +.+.++.+|...|.+++|+|++.+++++..++.+.+|+.
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            357899999999999999999999999999999999987  677889999999999999999999999999999999999


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ...+....+  ..+...+.++.|+|+++.+++++.|+.+++||++++.   ....+ ..|...+.+++|+|++++|++++
T Consensus        89 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~l~~~~  162 (317)
T d1vyhc1          89 QGFECIRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---CVKTF-TGHREWVRMVRPNQDGTLIASCS  162 (317)
T ss_dssp             TSSCEEECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---EEEEE-ECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccc--ccccccceeeeccCCCceEEeeccCcceeEeecccce---eeeEE-ccCCCcceeeecccCCCEEEEEe
Confidence            887744443  6788999999999999999999999999999998877   45555 78999999999999999999999


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCC--------------------CEEEEEc
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG--------------------NTLAYVG  223 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--------------------~~l~~~~  223 (379)
                      .|+.+++|++                  ...+.+..+..|...+..+.|+|++                    .++++++
T Consensus       163 ~d~~v~~~~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         163 NDQTVRVWVV------------------ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             TTSCEEEEET------------------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             CCCeEEEEee------------------ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence            9999999997                  6677788888888889999988753                    4688999


Q ss_pred             CCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCC
Q 016982          224 HNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQ  302 (379)
Q Consensus       224 ~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (379)
                      .|+.|++||+.++. .+..+.+|..+|.+++|+|++++|+ ++.|+.+++|+........                    
T Consensus       225 ~d~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------  283 (317)
T d1vyhc1         225 RDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK--------------------  283 (317)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE--------------------
T ss_pred             CCCEEEEEECCCCc-EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE--------------------
Confidence            99999999998876 4578888999999999999999887 6678899999876543222                    


Q ss_pred             cccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          303 FSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                                .+.+|.+.|++++ |++++    ++|+|||.||+|+|||
T Consensus       284 --------------------------~~~~h~~~V~~~~-~s~~~----~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 --------------------------TLNAHEHFVTSLD-FHKTA----PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             --------------------------EEECCSSCEEEEE-ECSSS----SCEEEEETTSEEEEEC
T ss_pred             --------------------------EEcCCCCCEEEEE-EcCCC----CEEEEEeCCCeEEEeC
Confidence                                      2257999999999 77665    8999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9e-44  Score=297.59  Aligned_cols=246  Identities=10%  Similarity=0.154  Sum_probs=210.7

Q ss_pred             ccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCc
Q 016982            8 QFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSE   87 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   87 (379)
                      .+.+.+.+++++|+|+.||++. ++.|.+|++.+.  .....+.+|...|++++|+|+|++|++|+.||+|++||+.+++
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCC--ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            3455677899999999999985 568999999876  5666788999999999999999999999999999999999887


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-EEEEeeC
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-FLATTST  164 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~  164 (379)
                      ......+..|..+|.+++|+|+++++++++.  +..+++|++++.+.   ...+ ..|...|.+++|+|+++ .|++|+.
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~---~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~  167 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS---NGNL-TGQARAMNSVDFKPSRPFRIISGSD  167 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB---CBCC-CCCSSCEEEEEECSSSSCEEEEEET
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccc---cccc-cccccccccccccccceeeeccccc
Confidence            6555556778999999999999999999886  45699999988763   4445 78999999999999987 4888999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeee-
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNV-  243 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-  243 (379)
                      |+.|++||+                  +..+....+..|...|+++.|+|++++|++++.|+.|++||+..+... ..+ 
T Consensus       168 d~~i~i~d~------------------~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~-~~~~  228 (311)
T d1nr0a1         168 DNTVAIFEG------------------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT-GVFE  228 (311)
T ss_dssp             TSCEEEEET------------------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EECB
T ss_pred             ccccccccc------------------cccccccccccccccccccccCcccccccccccccccccccccccccc-cccc
Confidence            999999997                  667888888899999999999999999999999999999999876532 222 


Q ss_pred             ------eeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          244 ------AFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       244 ------~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                            .+|...|++++|+|++++|+ ++.|+.+++|+.....
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence                  35778899999999999888 5568899999977543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-43  Score=303.42  Aligned_cols=289  Identities=17%  Similarity=0.187  Sum_probs=227.8

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe------------------ccCCCceEEEEEcCCCCE
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL------------------QKHDQIVSGIDWSVRSNR   68 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~------------------~~~~~~v~~~~~~~~~~~   68 (379)
                      ++|.+.|+|++|+|||++||+|+ |+.|+|||+.++  +.+..+                  ..|...|++++|+|++++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEeccc--ceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc
Confidence            46999999999999999999986 899999999876  333333                  346778999999999999


Q ss_pred             EEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           69 IVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        69 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                      |++|+.|+.|++||...++.....  ..|...|.++.+++++..+++++.++.+++||.....   .....  .+.....
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~--~~~~~~~  208 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---CSLTL--SIEDGVT  208 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEEE--ECSSCEE
T ss_pred             ceeccccccccccccccccccccc--ccccccccccccccccccccccccceeeeeeeccccc---ccccc--ccccccc
Confidence            999999999999999998865544  6789999999999999999999999999999998765   23333  3444455


Q ss_pred             EEEEcC-CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE-------eecCCcceEEEEECCCCCEEE
Q 016982          149 SVAWHP-NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ-------LDLSFSWAFGVKWSPSGNTLA  220 (379)
Q Consensus       149 ~~~~~p-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~sp~~~~l~  220 (379)
                      ++.+.+ ++++|++++.|+.|++||+                  .++..+..       ..+|...|.+++|+|++++|+
T Consensus       209 ~~~~~~~~~~~l~~~~~d~~i~i~~~------------------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         209 TVAVSPGDGKYIAAGSLDRAVRVWDS------------------ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             EEEECSTTCCEEEEEETTSCEEEEET------------------TTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             cccccCCCCCeEEEEcCCCeEEEeec------------------ccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence            555555 7899999999999999997                  33333333       346788999999999999999


Q ss_pred             EEcCCCeEEEEECCCCCc-----------eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEec
Q 016982          221 YVGHNSMIYFVDDVGPSP-----------LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLD  288 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~-----------~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~  288 (379)
                      +++.|+.|++||+.+...           .......|...|.+++|+|++++|+ ++.|+.+++|+........      
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~------  344 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL------  344 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE------
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE------
Confidence            999999999999876432           2234445778899999999999888 5678899999876543221      


Q ss_pred             ccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecc-cCCcccceEEEeecCceEEEEe
Q 016982          289 ERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLRE-AGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                                                              .+.+|.+.|+++++... .-+|++.+|||||.||+|+||+
T Consensus       345 ----------------------------------------~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~  384 (388)
T d1erja_         345 ----------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK  384 (388)
T ss_dssp             ----------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred             ----------------------------------------EEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEe
Confidence                                                    22579999999984221 1135669999999999999999


Q ss_pred             CC
Q 016982          368 LE  369 (379)
Q Consensus       368 ~~  369 (379)
                      ++
T Consensus       385 ~~  386 (388)
T d1erja_         385 YK  386 (388)
T ss_dssp             EE
T ss_pred             ee
Confidence            85

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.4e-41  Score=283.65  Aligned_cols=287  Identities=15%  Similarity=0.182  Sum_probs=236.0

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      +|.+|.++|++++|+|++++||+|+.||.|+|||+.++  +.+..+..|..+|.+++|+|+++++++++.|+.+.+|+..
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc--eeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            47899999999999999999999999999999999987  7888899999999999999999999999999999999987


Q ss_pred             CCceee--eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           85 GSEWVP--TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        85 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      ......  ......|.......... .+..+.....+.....+......   ..... ..+...+....+.+.+.+++++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         128 TREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQ---QTTTF-TGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             SSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTE---EEEEE-ECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccceecccccccccccccc-ccccccccccccccccccccccc---ccccc-cccceeEeeeccccccceeEEe
Confidence            653222  22234455544444443 45667778888888887766554   23333 6778889999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee-
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ-  241 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~-  241 (379)
                      +.|+.|++||+                  +.++++..+..|...|++++|+|++++|++++.|+.|++||+........ 
T Consensus       203 ~~d~~v~i~d~------------------~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~  264 (340)
T d1tbga_         203 ACDASAKLWDV------------------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             ETTTEEEEEET------------------TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ecCceEEEEEC------------------CCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc
Confidence            99999999997                  67888899999999999999999999999999999999999987764321 


Q ss_pred             eeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcc
Q 016982          242 NVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGN  320 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
                      ....+..++.+++|+|++++|+ ++.|+.+++|+........                                      
T Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~--------------------------------------  306 (340)
T d1tbga_         265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG--------------------------------------  306 (340)
T ss_dssp             CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEE--------------------------------------
T ss_pred             ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEE--------------------------------------
Confidence            2234567799999999999888 5678899999876543211                                      


Q ss_pred             cccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          321 DAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                              .+.+|.+.|++++ |++++    ++|+|||.||.|+|||
T Consensus       307 --------~~~~H~~~V~~l~-~s~d~----~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 --------VLAGHDNRVSCLG-VTDDG----MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --------EECCCSSCEEEEE-ECTTS----SCEEEEETTSCEEEEC
T ss_pred             --------EEcCCCCCEEEEE-EeCCC----CEEEEEccCCEEEEeC
Confidence                    2258999999999 77666    8999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-41  Score=280.97  Aligned_cols=287  Identities=16%  Similarity=0.192  Sum_probs=221.1

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL-QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      ..+++|.++|++++|+|++++||+|+.||.|++||+.++  +....+ ..|...|++++|+|++++ ++++.|+.+++|+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~   82 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG--ISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP   82 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence            357899999999999999999999999999999999987  555666 468999999999999864 5667789999999


Q ss_pred             ccCCceee-eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           83 QEGSEWVP-TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ........ ......+...+.+++|+|+++.+++++ ++.+.+|+...     ....   .....+.+++|+|++++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~-----~~~~---~~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK-----LTEV---PISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE-----EEEE---ECSSCEEEEEECTTSCEEEE
T ss_pred             cCCccccccccccccccccccccccccccccccccc-ccccccccccc-----cccc---cccccccccccccccccccc
Confidence            87543211 111234677889999999999877766 56899987432     1222   34456789999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceE-EEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCce-
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQI-LQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPL-  239 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~-  239 (379)
                      ++.|+.+++||+                  ...+.. .....|...|.+++|+|++++|++++.|+.|++||+.++... 
T Consensus       154 g~~dg~i~~~d~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         154 GGQDSKVHVYKL------------------SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             EETTSEEEEEEE------------------ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccccc------------------cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999997                  333322 233467889999999999999999999999999998776532 


Q ss_pred             -eeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982          240 -AQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG  317 (379)
Q Consensus       240 -~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (379)
                       ...+..|..+|++++|+|++++|+ ++.|+.+++|+...........                                
T Consensus       216 ~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--------------------------------  263 (299)
T d1nr0a2         216 HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII--------------------------------  263 (299)
T ss_dssp             CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE--------------------------------
T ss_pred             ccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE--------------------------------
Confidence             234566889999999999999888 5678999999876543211110                                


Q ss_pred             CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCC
Q 016982          318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLE  369 (379)
Q Consensus       318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~  369 (379)
                                 ....|...|.++. +++     +++|+|||.||.|++||+.
T Consensus       264 -----------~~~~~~~~v~~~~-~~~-----~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         264 -----------KGAHAMSSVNSVI-WLN-----ETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -----------TTSSTTSCEEEEE-EEE-----TTEEEEEETTSCEEEEECC
T ss_pred             -----------ecCCCCCcEEEEE-ECC-----CCEEEEEeCCCEEEEEecc
Confidence                       1123445666665 533     2699999999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-39  Score=272.66  Aligned_cols=246  Identities=18%  Similarity=0.222  Sum_probs=204.8

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC--CCeEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH--DRNSYVWN   82 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~vw~   82 (379)
                      .+.+|.+.|++++|+|+|++||+|+.||.|++||+.+++......+..|..+|.+++|+|++++|++++.  +..+++|+
T Consensus        53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~  132 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  132 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccc
Confidence            3568999999999999999999999999999999998765566778899999999999999999999885  45699999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCE-EEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENK-FAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      +++++....+  ..|...|.+++|+|++++ |++|+.|+.|++||+++.+   ....+ ..|...|.++.|+|++++|++
T Consensus       133 ~~~~~~~~~l--~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~---~~~~~-~~~~~~i~~v~~~p~~~~l~~  206 (311)
T d1nr0a1         133 FDTGTSNGNL--TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---FKSTF-GEHTKFVHSVRYNPDGSLFAS  206 (311)
T ss_dssp             TTTCCBCBCC--CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---EEEEE-CCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccc--cccccccccccccccceeeecccccccccccccccccc---ccccc-ccccccccccccCcccccccc
Confidence            9988765554  678899999999999885 7889999999999998876   34455 789999999999999999999


Q ss_pred             eeCCCeEEEEeccccccccccccCCCccCCcccceEEEe-------ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECC
Q 016982          162 TSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-------DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDV  234 (379)
Q Consensus       162 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~  234 (379)
                      ++.|+.+++||+                  ..+..+..+       .+|...|++++|+|++++|++++.||.|+|||++
T Consensus       207 ~~~d~~v~~~d~------------------~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         207 TGGDGTIVLYNG------------------VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             EETTSCEEEEET------------------TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cccccccccccc------------------ccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            999999999997                  333444333       3577899999999999999999999999999998


Q ss_pred             CCCceeeeeeeecC---CeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          235 GPSPLAQNVAFRDL---PLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       235 ~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      +++ +++.+..+..   .+.++.|+++ .+++++.||.+++|+.+
T Consensus       269 t~~-~~~~l~~~~~~~~~~~~~~~~~~-~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         269 TLK-VEKTIPVGTRIEDQQLGIIWTKQ-ALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTE-EEEEEECCSSGGGCEEEEEECSS-CEEEEETTCCEEEEETT
T ss_pred             CCc-EEEEEECCCCccceEEEEEecCC-EEEEEECCCEEEEEeCC
Confidence            876 4566665432   3344555433 45558899999999853

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-38  Score=265.21  Aligned_cols=242  Identities=15%  Similarity=0.140  Sum_probs=211.1

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      ..+|.+.|++++|+|++++|++|+.||.|++||+.....+....+..|...+.+++|+|++.++++++.|+.|++|++.+
T Consensus        93 ~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~  172 (337)
T d1gxra_          93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45788999999999999999999999999999998765677788889999999999999999999999999999999999


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      ++.....  ..|...+.+++|++++..+++++.|+.+++||+++++   ....  ..|...|.+++|+|++++|++++.|
T Consensus       173 ~~~~~~~--~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~---~~~~--~~~~~~i~~l~~~~~~~~l~~~~~d  245 (337)
T d1gxra_         173 QTLVRQF--QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR---QLQQ--HDFTSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             TEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---EEEE--EECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccc--cccccccccccccccccccccccccccccccccccce---eecc--cccccceEEEEEcccccccceeccc
Confidence            8755443  6788999999999999999999999999999998876   3333  4688999999999999999999999


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      +.+++||+                  ...+. .....|...|++++|+|++++|++++.|+.|++||+.+++.+ ... .
T Consensus       246 ~~i~i~d~------------------~~~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~-~~~-~  304 (337)
T d1gxra_         246 SNVEVLHV------------------NKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQS-K  304 (337)
T ss_dssp             SCEEEEET------------------TSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEE-E
T ss_pred             cccccccc------------------ccccc-ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE-EEc-c
Confidence            99999997                  33343 345678889999999999999999999999999999887644 443 4


Q ss_pred             ecCCeeeEEEecCCcEEE-EEeCCCeEEEEe
Q 016982          246 RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       246 ~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      |...|.+++|+|++++|+ ++.|+.+++|++
T Consensus       305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            788999999999999888 567899999874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-38  Score=267.62  Aligned_cols=285  Identities=15%  Similarity=0.145  Sum_probs=224.4

Q ss_pred             cceeccCcce-eEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982            4 IAVHQFAQCI-TCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus         4 ~~~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      .+|.+|.+.| +|++|  ++++||+|+.||.|+|||+.++  +.+.++.+|.++|++++|+|+ ++|++++.|+.|++|+
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT--EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC--cEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            4588998875 66665  6789999999999999999987  788999999999999999985 5899999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce-----------------------------
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW-----------------------------  133 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-----------------------------  133 (379)
                      +...+.........+........+++++..+++++.|+.|++|++......                             
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            998876555543344455566777888888999999999999987643210                             


Q ss_pred             -------------------------------eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEecccccccccc
Q 016982          134 -------------------------------WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKE  182 (379)
Q Consensus       134 -------------------------------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~  182 (379)
                                                     ...... ..+...+.++.|+|+++++++++.|+.|++||+         
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~---------  230 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDL---------  230 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEET---------
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeee-eccccccccccccccceeeecccccceEEeeec---------
Confidence                                           001111 345567788899999999999999999999996         


Q ss_pred             ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeE-EEecCCcE
Q 016982          183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDV-LFVSEKMV  261 (379)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~  261 (379)
                               .++.++..+.+|...|.++++++  ++|++++.||.|++||+++..   +.+..|...+.++ .+++++++
T Consensus       231 ---------~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~  296 (355)
T d1nexb2         231 ---------ENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNI  296 (355)
T ss_dssp             ---------TTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSE
T ss_pred             ---------ccccccccccccccccccccccc--ceeeeeecccccccccccccc---eecccccCCceEEEEEcCCCCE
Confidence                     67888899999999999999974  689999999999999998765   3455666666665 56778999


Q ss_pred             EEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeee
Q 016982          262 IGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIV  341 (379)
Q Consensus       262 l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  341 (379)
                      ++++.|+.+++|+........                                             ..+.+|.+.|++++
T Consensus       297 l~~g~d~~i~vwd~~tg~~~~---------------------------------------------~~~~~~~~~V~~v~  331 (355)
T d1nexb2         297 LVSGSENQFNIYNLRSGKLVH---------------------------------------------ANILKDADQIWSVN  331 (355)
T ss_dssp             EEEEETTEEEEEETTTCCBCC---------------------------------------------SCTTTTCSEEEEEE
T ss_pred             EEEEeCCEEEEEECCCCCEEE---------------------------------------------EEecCCCCCEEEEE
Confidence            999999999999876543110                                             02357999999999


Q ss_pred             eecccCCcccceEEEeecCceEEEEeC
Q 016982          342 PLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       342 ~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                       |+++     .++++++.||.++||.+
T Consensus       332 -~~~~-----~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         332 -FKGK-----TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             -EETT-----EEEEEEESSSCEEEEEE
T ss_pred             -EcCC-----eEEEEEECCCcEEEEEE
Confidence             6544     58889999998766543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-37  Score=259.19  Aligned_cols=245  Identities=14%  Similarity=0.162  Sum_probs=191.9

Q ss_pred             cceeEEEeCCCCcEEEEEecCC-eEEEEEecCCceEEEEEeccC-CCceEEEEEcC--CCCEEEEEeCCCeEEEEeccCC
Q 016982           11 QCITCHAWSPDHAMVAFCPNNN-EVHIYKLIQEKWEKLHVLQKH-DQIVSGIDWSV--RSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      ..+++++|+|+++.|++++.+. .|+.|+...........+.+| ...|++++|+|  ++++|++++.||+|++||+..+
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            4568899999999999886543 345566544444556777777 46899999998  4679999999999999998765


Q ss_pred             ceeeeE------EeecCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc-
Q 016982           87 EWVPTL------VILRLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV-  157 (379)
Q Consensus        87 ~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-  157 (379)
                      +.....      ....+.++|.+++|+++++.+++++.  ++.+++|+++++.   ....+ .+|...|.+++|+|++. 
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~-~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN---SLGEV-SGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC---EEEEC-CSCSSCEEEEEECSSSSC
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc---cceee-eecccccccccccccccc
Confidence            422221      22457789999999999999888765  6779999998776   45555 78999999999999886 


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE---eecCCcceEEEEECCC-CCEEEEEcCCCeEEEEEC
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ---LDLSFSWAFGVKWSPS-GNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~-~~~l~~~~~d~~i~v~d~  233 (379)
                      ++++++.|+.+++||.                  ...+....   ...|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus       174 ~~~~~~~d~~v~~~d~------------------~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~  235 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQG------------------PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  235 (325)
T ss_dssp             EEEEEETTTEEEEEET------------------TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             eEEEeecccccccccc------------------cccccceecccccCCCCccEEeeeccccceeccccccccceeeeee
Confidence            4778999999999996                  33333333   3456778999999996 688999999999999999


Q ss_pred             CCCCceeeeeeeecCCeeeEEEe---cCCcEEE-EEeCCCeEEEEecCC
Q 016982          234 VGPSPLAQNVAFRDLPLRDVLFV---SEKMVIG-VGFDCNPMVFAADET  278 (379)
Q Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~-~~~d~~~~i~~~~~~  278 (379)
                      ++++ .+..+..|..++.++.|+   |+|++|+ ++.|+.+++|+....
T Consensus       236 ~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         236 KSGE-FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             TTCC-EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             cccc-ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            8876 457888888888777776   6777666 778999999987754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-36  Score=258.83  Aligned_cols=249  Identities=14%  Similarity=0.149  Sum_probs=198.7

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCce
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNW  133 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~  133 (379)
                      ..+|+|++|+|++++|++++.|+.|++||+.+++......+.+|.++|.+++|+|++++|++++.|+.|++||++.....
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            46899999999999999999999999999998876666666889999999999999999999999999999999876521


Q ss_pred             eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC
Q 016982          134 WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS  213 (379)
Q Consensus       134 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  213 (379)
                       ....+ ..|...|.+++|+|+++.|++++.|+.+++|++...              ............|...|.+++|+
T Consensus        87 -~~~~~-~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~--------------~~~~~~~~~~~~~~~~v~~v~~~  150 (371)
T d1k8kc_          87 -PTLVI-LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE--------------NDWWVCKHIKKPIRSTVLSLDWH  150 (371)
T ss_dssp             -EEEEC-CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT--------------TTEEEEEEECTTCCSCEEEEEEC
T ss_pred             -ccccc-ccccccccccccccccccceeecccCcceeeeeecc--------------ccccccccccccccccccccccc
Confidence             12222 578889999999999999999999999999987210              01112234456678899999999


Q ss_pred             CCCCEEEEEcCCCeEEEEECCCCC-----------------ceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEe
Q 016982          214 PSGNTLAYVGHNSMIYFVDDVGPS-----------------PLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       214 p~~~~l~~~~~d~~i~v~d~~~~~-----------------~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      |++++|++++.|+.|++||+....                 ........|...|.+++|+|+|++|+ ++.|+.+.+|+.
T Consensus       151 p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~  230 (371)
T d1k8kc_         151 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  230 (371)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee
Confidence            999999999999999999975431                 13344556778899999999999887 667889999997


Q ss_pred             cCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEE
Q 016982          276 DETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFT  355 (379)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~  355 (379)
                      .......                                              .+.+|..+|++++ |++++    .+|+
T Consensus       231 ~~~~~~~----------------------------------------------~~~~~~~~v~s~~-fs~d~----~~la  259 (371)
T d1k8kc_         231 DKKMAVA----------------------------------------------TLASETLPLLAVT-FITES----SLVA  259 (371)
T ss_dssp             GGTTEEE----------------------------------------------EEECSSCCEEEEE-EEETT----EEEE
T ss_pred             eccccee----------------------------------------------eeecccccceeee-ecCCC----CEEE
Confidence            6544221                                              1246888999999 77766    6776


Q ss_pred             EeecCceEEEEeCCC
Q 016982          356 TSGLDGKIVTWDLES  370 (379)
Q Consensus       356 t~~~Dg~v~iW~~~~  370 (379)
                      + |.|+.+++|....
T Consensus       260 ~-g~d~~~~~~~~~~  273 (371)
T d1k8kc_         260 A-GHDCFPVLFTYDS  273 (371)
T ss_dssp             E-ETTSSCEEEEEET
T ss_pred             E-EcCCceEEEEeeC
Confidence            5 4578777776554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-35  Score=246.95  Aligned_cols=285  Identities=16%  Similarity=0.139  Sum_probs=214.0

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|.+.|.+ +++++|++||+|+.||.|+|||+.++  +++.++.+|...|.+++|+|+  +|++++.|+.+++|+.
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            458899999865 46668999999999999999999987  688999999999999999874  9999999999999998


Q ss_pred             cCCceeeeEEeecCCCce--------------------------------------eEEEECCCCCEEEEEeCCCeEEEE
Q 016982           84 EGSEWVPTLVILRLNRAA--------------------------------------LCVQWSPKENKFAVGSGAKTVCIC  125 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v--------------------------------------~~~~~~~~~~~l~~~~~d~~v~i~  125 (379)
                      .........  ..+...+                                      ......+....+++++.|+.+++|
T Consensus        85 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  162 (342)
T d2ovrb2          85 ETGECIHTL--YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW  162 (342)
T ss_dssp             TTTEEEEEE--CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEE
T ss_pred             ccccceecc--cccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEe
Confidence            765422211  1111111                                      111223345577888889999999


Q ss_pred             EeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982          126 YYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS  205 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
                      |.....   ....+ ..|...+..+.+  ++.++++++.||.|++||+                  +.++++..+..|..
T Consensus       163 d~~~~~---~~~~~-~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~------------------~~~~~~~~~~~~~~  218 (342)
T d2ovrb2         163 DPETET---CLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV------------------ETGNCIHTLTGHQS  218 (342)
T ss_dssp             EGGGTE---EEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEET------------------TTCCEEEEECCCCS
T ss_pred             ecccce---eeEEE-cCcccccccccC--CCCEEEEEeCCCeEEEeec------------------ccceeeeEeccccc
Confidence            987765   34444 667766665554  7889999999999999997                  66788888999999


Q ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee---ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcE
Q 016982          206 WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF---RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIW  281 (379)
Q Consensus       206 ~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~  281 (379)
                      .+.+++++  +++|++++.|+.|++||+...+.. ..+..   |...+.++.++  +.+++ ++.|+.+++|+.......
T Consensus       219 ~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i  293 (342)
T d2ovrb2         219 LTSGMELK--DNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI  293 (342)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ceeEEecC--CCEEEEEcCCCEEEEEeccccccc-ccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEE
Confidence            99888776  469999999999999999887643 44443   34455555554  45655 778999999998765432


Q ss_pred             EEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCc
Q 016982          282 TFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDG  361 (379)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg  361 (379)
                      ......                                         ...+|...|++++ +++++    .+||+|+.||
T Consensus       294 ~~~~~~-----------------------------------------~~~~~~~~v~~v~-~s~~~----~~la~g~~dG  327 (342)
T d2ovrb2         294 RNLVTL-----------------------------------------ESGGSGGVVWRIR-ASNTK----LVCAVGSRNG  327 (342)
T ss_dssp             EEEEEC-----------------------------------------TTGGGTCEEEEEE-ECSSE----EEEEEECSSS
T ss_pred             EEEecc-----------------------------------------cCCCCCCCEEEEE-ECCCC----CEEEEEeCCC
Confidence            221111                                         1146889999999 76665    8999999998


Q ss_pred             e----EEEEeCCC
Q 016982          362 K----IVTWDLES  370 (379)
Q Consensus       362 ~----v~iW~~~~  370 (379)
                      +    |++||+..
T Consensus       328 t~~~~l~~~Df~~  340 (342)
T d2ovrb2         328 TEETKLLVLDFDV  340 (342)
T ss_dssp             SSCCEEEEEECCC
T ss_pred             CCeeEEEEEeCCC
Confidence            5    99999964

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-35  Score=246.93  Aligned_cols=256  Identities=14%  Similarity=0.171  Sum_probs=218.5

Q ss_pred             EEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEE
Q 016982           46 KLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCIC  125 (379)
Q Consensus        46 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  125 (379)
                      ...+|.+|.++|++++|+|++++|++|+.|++|++||+.+++.+..+  ..|...|.+++|+|++.+++++..++.+.+|
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~--~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL--KGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE--CCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE--eCCCCcEEEEeeecccccccccccccccccc
Confidence            44678999999999999999999999999999999999999866655  6799999999999999999999999999999


Q ss_pred             EeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc
Q 016982          126 YYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS  205 (379)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
                      +.....   ....+ ..|...+.++.|+|+++.+++++.|+.+++||+                  .+++.+..+..|..
T Consensus        87 ~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------------~~~~~~~~~~~~~~  144 (317)
T d1vyhc1          87 DFQGFE---CIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV------------------QTGYCVKTFTGHRE  144 (317)
T ss_dssp             ETTSSC---EEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEET------------------TTCCEEEEEECCSS
T ss_pred             cccccc---ccccc-ccccccceeeeccCCCceEEeeccCcceeEeec------------------ccceeeeEEccCCC
Confidence            887766   34444 788999999999999999999999999999997                  67788888999999


Q ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc--------------------EEE-E
Q 016982          206 WAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM--------------------VIG-V  264 (379)
Q Consensus       206 ~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~--------------------~l~-~  264 (379)
                      .+.+++|+|++.+|++++.|+.|++|++.+.. ....+..+...+..+.|+|++.                    +++ +
T Consensus       145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             cceeeecccCCCEEEEEeCCCeEEEEeeccce-eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            99999999999999999999999999998876 4477777888899999887543                    333 6


Q ss_pred             EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeec
Q 016982          265 GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLR  344 (379)
Q Consensus       265 ~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  344 (379)
                      +.|+.+++|+......   ..                                           .+.+|...|++++ ++
T Consensus       224 ~~d~~i~~~~~~~~~~---~~-------------------------------------------~~~~~~~~v~~~~-~~  256 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMC---LM-------------------------------------------TLVGHDNWVRGVL-FH  256 (317)
T ss_dssp             ETTSEEEEEETTTTEE---EE-------------------------------------------EEECCSSCEEEEE-EC
T ss_pred             cCCCEEEEEECCCCcE---EE-------------------------------------------EEeCCCCCEEEEE-EC
Confidence            6778888887654321   11                                           2257999999999 76


Q ss_pred             ccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          345 EAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       345 ~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      +++    ++|++|+.||.|++||+.+++.++.+
T Consensus       257 ~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~  285 (317)
T d1vyhc1         257 SGG----KFILSCADDKTLRVWDYKNKRCMKTL  285 (317)
T ss_dssp             SSS----SCEEEEETTTEEEEECCTTSCCCEEE
T ss_pred             CCC----CEEEEEECCCeEEEEECCCCcEEEEE
Confidence            665    89999999999999999998877654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-35  Score=253.33  Aligned_cols=258  Identities=16%  Similarity=0.158  Sum_probs=205.2

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      ..|...|++++|+|++++|++|+.||.|++|+...+  +.+..+.+|...|.++.|++++..+++++.++.+++||..+.
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cCCCCCEEEEEECCCCCcceeccccccccccccccc--ccccccccccccccccccccccccccccccceeeeeeecccc
Confidence            457888999999999999999999999999999887  778888999999999999999999999999999999999988


Q ss_pred             ceeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCeEEEEEeecCCceeEEEE---EeecCCcCEEEEEEcCCCcEEEEe
Q 016982           87 EWVPTLVILRLNRAALCVQWSP-KENKFAVGSGAKTVCICYYEQENNWWVSKL---IRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      ......  . +.....++.+.+ ++++|++++.|+.|++|+............   ....|...|.+++|+|++++|+++
T Consensus       196 ~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  272 (388)
T d1erja_         196 QCSLTL--S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  272 (388)
T ss_dssp             EEEEEE--E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccc--c-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            744433  3 344445555554 889999999999999999987763211111   114688999999999999999999


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      +.|+.|++||+.........      .......+......|...|.+++|+|++++|++|+.||.|++||+.+++ ++..
T Consensus       273 ~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~-~~~~  345 (388)
T d1erja_         273 SLDRSVKLWNLQNANNKSDS------KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLM  345 (388)
T ss_dssp             ETTSEEEEEEC---------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-EEEE
T ss_pred             ECCCcEEEEeccCCcccccc------ccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEE
Confidence            99999999997422111100      0012345566677888999999999999999999999999999999876 4588


Q ss_pred             eeeecCCeeeEEE------ecCCcEEE-EEeCCCeEEEEec
Q 016982          243 VAFRDLPLRDVLF------VSEKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       243 ~~~~~~~i~~~~~------s~~~~~l~-~~~d~~~~i~~~~  276 (379)
                      +.+|...|.++++      +|++.+|+ ++.|+.|++|+..
T Consensus       346 l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            8999999998875      56888888 6778999999853

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.6e-36  Score=247.74  Aligned_cols=255  Identities=11%  Similarity=0.080  Sum_probs=198.8

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      +..+++.+|..+|++++|+|++++|++|+.|++|++||+.+++....+. ..|...|.+++|+|++++ ++++.|+.+++
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~   80 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-DVHATMITGIKTTSKGDL-FTVSWDDHLKV   80 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-CSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-CCCCCcEEEEEeecccee-ecccceeeEEE
Confidence            5678899999999999999999999999999999999999987655442 458899999999999875 55667999999


Q ss_pred             EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                      |+............. ..+...+.+++|+|+++.+++++ ++.+++|+.                    .+.....  ..
T Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~--------------------~~~~~~~--~~  136 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVA-NKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSH--------------------GKLTEVP--IS  136 (299)
T ss_dssp             ECSSSSSSCTTSCCE-EECSSCEEEEEECTTSSCEEEEE-SSEEEEEET--------------------TEEEEEE--CS
T ss_pred             eccCCcccccccccc-ccccccccccccccccccccccc-ccccccccc--------------------ccccccc--cc
Confidence            997654321111222 56778899999999998777665 568999984                    1222222  23


Q ss_pred             cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEE
Q 016982          205 SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTF  283 (379)
Q Consensus       205 ~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~  283 (379)
                      ..+.+++|+|++++|++++.|+.|++||+.+..........|..+|.+++|+|++++|+ ++.++.+++|+.........
T Consensus       137 ~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45788999999999999999999999999876533334456788999999999999887 66788999998765431110


Q ss_pred             EEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceE
Q 016982          284 IKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKI  363 (379)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v  363 (379)
                      .                                           ..+.+|...|++++ |++++    ++|++|+.||.|
T Consensus       217 ~-------------------------------------------~~~~~h~~~v~~l~-~s~~~----~~l~sgs~dg~i  248 (299)
T d1nr0a2         217 T-------------------------------------------NSWTFHTAKVACVS-WSPDN----VRLATGSLDNSV  248 (299)
T ss_dssp             C-------------------------------------------CCCCCCSSCEEEEE-ECTTS----SEEEEEETTSCE
T ss_pred             c-------------------------------------------cccccccccccccc-ccccc----cceEEEcCCCEE
Confidence            0                                           02357999999999 77665    899999999999


Q ss_pred             EEEeCCCccc
Q 016982          364 VTWDLESQED  373 (379)
Q Consensus       364 ~iW~~~~~~~  373 (379)
                      ++||+++++.
T Consensus       249 ~iwd~~~~~~  258 (299)
T d1nr0a2         249 IVWNMNKPSD  258 (299)
T ss_dssp             EEEETTCTTS
T ss_pred             EEEECCCCCc
Confidence            9999987543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=233.60  Aligned_cols=281  Identities=14%  Similarity=0.152  Sum_probs=216.1

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCC
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGS   86 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~   86 (379)
                      .+|...|+|++|  |+++||+|+.||.|+|||+.++  +++.++.+|...|++++|  ++++|++++.|+.|++|++..+
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEeeeec--ccceeecccccccccccccccc
Confidence            356788998765  7899999999999999999887  788899999999999987  5789999999999999999988


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG  166 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  166 (379)
                      ......  .  ........+.+....++++..++.+.+|+............+ ..|...+..+.+.+  ..+++++.|+
T Consensus        86 ~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~s~d~  158 (293)
T d1p22a2          86 EMLNTL--I--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDFDD--KYIVSASGDR  158 (293)
T ss_dssp             CEEEEE--C--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEEET--TEEEEEETTS
T ss_pred             cccccc--c--ccccccccccccccceeecccccceeEeeccccccccccccc-cccccccccceecc--cccccccCCC
Confidence            744433  2  222233445566778999999999999999887654444444 67888888887754  5788899999


Q ss_pred             eEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982          167 KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR  246 (379)
Q Consensus       167 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  246 (379)
                      .+++||+                  .+++.+..+.++...+..+.++  +.++++++.|+.|++||+++... +.....+
T Consensus       159 ~i~~~d~------------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~  217 (293)
T d1p22a2         159 TIKVWNT------------------STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC-LRVLEGH  217 (293)
T ss_dssp             EEEEEET------------------TTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-EEEECCC
T ss_pred             ceeeecC------------------CCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEeccccee-eeeeccc
Confidence            9999997                  6778888888888888888775  56899999999999999988764 4666666


Q ss_pred             cCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccc
Q 016982          247 DLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVES  325 (379)
Q Consensus       247 ~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (379)
                      ...+..  +++++.+|+ ++.|+.+++|+........          ..          ....                 
T Consensus       218 ~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~----------~~----------~~~~-----------------  258 (293)
T d1p22a2         218 EELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPR----------AP----------AGTL-----------------  258 (293)
T ss_dssp             SSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTT----------SC----------TTTT-----------------
T ss_pred             ceeeee--ccccceEEEEEcCCCEEEEEECCCCcccc----------cc----------CCce-----------------
Confidence            666654  455666666 7789999999865321000          00          0000                 


Q ss_pred             ccccccccccceeeeeeecccCCcccceEEEeecCceEEEEe
Q 016982          326 SRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWD  367 (379)
Q Consensus       326 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~  367 (379)
                      ....+.+|.+.|++++ +  ++    .+|+|||.||+|++||
T Consensus       259 ~~~~~~~H~~~V~~v~-~--d~----~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         259 CLRTLVEHSGRVFRLQ-F--DE----FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEECCCSSCCCCEE-E--CS----SCEEECCSSSEEEEEC
T ss_pred             eeEEecCCCCCEEEEE-E--cC----CEEEEEecCCEEEEeC
Confidence            0013468999999999 4  23    6899999999999998

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=242.65  Aligned_cols=249  Identities=14%  Similarity=0.141  Sum_probs=196.6

Q ss_pred             ceecc-CcceeEEEeCC--CCcEEEEEecCCeEEEEEecCCc------eEEEEEeccCCCceEEEEEcCCCCEEEEEeC-
Q 016982            5 AVHQF-AQCITCHAWSP--DHAMVAFCPNNNEVHIYKLIQEK------WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-   74 (379)
Q Consensus         5 ~~~~~-~~~i~~~~~s~--~~~~l~~~~~dg~i~i~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-   74 (379)
                      .+.+| ...|++++|+|  ++.+||+|+.||+|+|||+..++      ......+..|.++|.+++|++++++|++++. 
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            34566 56899999998  66899999999999999987532      2233456678899999999999999887764 


Q ss_pred             -CCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCE-EEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEE
Q 016982           75 -DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENK-FAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAW  152 (379)
Q Consensus        75 -d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  152 (379)
                       ++.+.+|+.++++....+  ..|...|.+++|+|++.. +++++.|+.+++|+....+........ ..|...|.+++|
T Consensus       137 ~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~-~~~~~~v~~v~~  213 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEV--SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEF  213 (325)
T ss_dssp             SSCSEEEEETTTCCEEEEC--CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEE
T ss_pred             ccceEEEEeecccccceee--eecccccccccccccccceEEEeecccccccccccccccceecccc-cCCCCccEEeee
Confidence             677999999988755544  678999999999998875 677899999999998766521111112 467788999999


Q ss_pred             cCC-CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC---CCCCEEEEEcCCCeE
Q 016982          153 HPN-NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS---PSGNTLAYVGHNSMI  228 (379)
Q Consensus       153 ~p~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~~~~~d~~i  228 (379)
                      +|+ +.+|++++.|+.|++||+                  ++++.+..+.+|..++..+.|+   |+|++|++++.|+.|
T Consensus       214 ~pd~~~~l~s~~~d~~i~iwd~------------------~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i  275 (325)
T d1pgua1         214 SPDSGEFVITVGSDRKISCFDG------------------KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATI  275 (325)
T ss_dssp             CSTTCCEEEEEETTCCEEEEET------------------TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEE
T ss_pred             ccccceeccccccccceeeeee------------------ccccccccccccccccccceeeeeccCCCEEEEEeCCCeE
Confidence            997 589999999999999996                  6788889998888777666665   689999999999999


Q ss_pred             EEEECCCCCceeeeeeeecCC--ee--eEEEecCCcEEEEEeCCCeEEEEe
Q 016982          229 YFVDDVGPSPLAQNVAFRDLP--LR--DVLFVSEKMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       229 ~v~d~~~~~~~~~~~~~~~~~--i~--~~~~s~~~~~l~~~~d~~~~i~~~  275 (379)
                      +|||+++++ +++.+..+...  +.  ++.|.+++.+++++.|+.+++|++
T Consensus       276 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         276 RVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTTTE-EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEECCCCC-EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            999998876 44666555443  33  445555666777888999999973

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-34  Score=239.30  Aligned_cols=267  Identities=16%  Similarity=0.154  Sum_probs=205.7

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEec
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQ   83 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~   83 (379)
                      ..+.+|..+|++++|+|    |++|+.||.|++||+.+.       ..+|...|.++++++++ .+++++.|+++++|++
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCCC-eEEEEeeccccccccc
Confidence            46889999999999997    999999999999998753       25799999999998764 6789999999999997


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                      ...+         ....+..+.+++++..++++. ++.+.+|+.....   ....+  .+...+  .+++|++..+++++
T Consensus        75 ~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~--~~~~~~--~~~~~~~~~~~v~~  137 (287)
T d1pgua2          75 TKHE---------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGD---IIKSV--RLNSPG--SAVSLSQNYVAVGL  137 (287)
T ss_dssp             EEEE---------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCC---EEEEE--ECSSCE--EEEEECSSEEEEEE
T ss_pred             cccc---------cccceeeeeeccCCceEEEee-cccceeeecccee---eeeec--ccccee--eeeeccCcceeeec
Confidence            5432         245577888998887776655 5678888877766   34443  233333  45667787888877


Q ss_pred             CCC-eEEEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee
Q 016982          164 TDG-KCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       164 ~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~  241 (379)
                      .++ .+++|++                  ...+....+ ..+...+++++|+|++.+|++++.||.|++||+.+......
T Consensus       138 ~~~~~v~~~~~------------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         138 EEGNTIQVFKL------------------SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             TTTSCEEEEET------------------TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             cccceeeeeec------------------cccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence            765 7999996                  223333333 34677899999999999999999999999999988765555


Q ss_pred             eeeeecCCeeeEEEecCC----------cEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCccccccee
Q 016982          242 NVAFRDLPLRDVLFVSEK----------MVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKL  310 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~----------~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (379)
                      .+..|..+|.+++|+|++          .+++ ++.|+.+++|+......  ...                         
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~--~~~-------------------------  252 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK--IIK-------------------------  252 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--CEE-------------------------
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe--EEE-------------------------
Confidence            667889999999998744          4666 67889999998654321  111                         


Q ss_pred             eccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeC
Q 016982          311 YGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDL  368 (379)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~  368 (379)
                                        .+.+|.+.|++++ |.+++     .|+|+|.||.|++|++
T Consensus       253 ------------------~~~~h~~~V~~v~-~~~~~-----~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         253 ------------------ALNAHKDGVNNLL-WETPS-----TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ------------------ETTSSTTCEEEEE-EEETT-----EEEEEETTSCEEEEEE
T ss_pred             ------------------EeCCCCCCeEEEE-ECCCC-----EEEEEECCCeEEEEEE
Confidence                              2368999999999 66554     6899999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-32  Score=231.39  Aligned_cols=261  Identities=13%  Similarity=0.157  Sum_probs=211.6

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      +..++|++|.++|++++|+|++++|++|+.||+|++||+.+++.+..+  ..|...|.+++|+|+++++++++.|+.+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~--~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI--PLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE--ECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE--ecccccEEeeEeeccceeeeeecccceeec
Confidence            567889999999999999999999999999999999999999866655  568999999999999999999999999999


Q ss_pred             EEeecCCce-eEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          125 CYYEQENNW-WVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       125 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                      |+....... .....+ ..|.......... .+..+.....+.....+..                  ...........+
T Consensus       124 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  183 (340)
T d1tbga_         124 YNLKTREGNVRVSREL-AGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDI------------------ETGQQTTTFTGH  183 (340)
T ss_dssp             EESSSSCSCCCEEEEE-CCCSSCEEEEEEE-ETTEEEEEETTTEEEEEET------------------TTTEEEEEEECC
T ss_pred             ccccccccccccceec-ccccccccccccc-ccccccccccccccccccc------------------cccccccccccc
Confidence            997765432 123333 5676666665555 4556777788888888875                  344455555666


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEE
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWT  282 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~  282 (379)
                      ...+....+.+.+.++++++.|+.|++||++++. .+..+..|..+|++++|+|++++|+ ++.|+.+++|+........
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~  262 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM  262 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ceeEeeeccccccceeEEeecCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc
Confidence            7789999999999999999999999999998876 4577888999999999999999887 5678899999876543221


Q ss_pred             EEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCce
Q 016982          283 FIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGK  362 (379)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~  362 (379)
                      ..                                            ....|...|++++ |++++    ++|++|+.||.
T Consensus       263 ~~--------------------------------------------~~~~~~~~i~~~~-~s~~~----~~l~~g~~dg~  293 (340)
T d1tbga_         263 TY--------------------------------------------SHDNIICGITSVS-FSKSG----RLLLAGYDDFN  293 (340)
T ss_dssp             EE--------------------------------------------CCTTCCSCEEEEE-ECSSS----CEEEEEETTSC
T ss_pred             cc--------------------------------------------ccccccCceEEEE-ECCCC----CEEEEEECCCE
Confidence            10                                            1134677899999 77665    89999999999


Q ss_pred             EEEEeCCCccccccC
Q 016982          363 IVTWDLESQEDLLNY  377 (379)
Q Consensus       363 v~iW~~~~~~~~~~~  377 (379)
                      |++||+.+++.+..+
T Consensus       294 i~iwd~~~~~~~~~~  308 (340)
T d1tbga_         294 CNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEETTTCCEEEEE
T ss_pred             EEEEECCCCcEEEEE
Confidence            999999998877654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-32  Score=234.23  Aligned_cols=291  Identities=13%  Similarity=0.119  Sum_probs=189.6

Q ss_pred             EEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce----eeeEEeecCCCceeEEEE------CC-CCCEEE
Q 016982           46 KLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW----VPTLVILRLNRAALCVQW------SP-KENKFA  114 (379)
Q Consensus        46 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~v~~~~~------~~-~~~~l~  114 (379)
                      .....++|...|.++++++  ++|++++.|++|++||..+.+.    ........+...+..+..      +. ++..++
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            4466789999999999874  6999999999999999766531    112222234433322221      22 345788


Q ss_pred             EEeCCCeEEEEEeecCCceeEEE--EEe----ecCCcCEEEEEEcCC-----CcEEEEeeCCCeEEEEeccccccccccc
Q 016982          115 VGSGAKTVCICYYEQENNWWVSK--LIR----KRHDSSVTSVAWHPN-----NVFLATTSTDGKCRVFSTFIKGVDIKEK  183 (379)
Q Consensus       115 ~~~~d~~v~i~~~~~~~~~~~~~--~~~----~~~~~~v~~~~~~p~-----~~~l~~~~~d~~i~v~d~~~~~~~~~~~  183 (379)
                      +++.||.+++|++..........  ...    ..+...+..++|.++     +.++++++.||.+++|++.....+....
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            89999999999987654311111  110    234456778888775     4688999999999999974222111111


Q ss_pred             cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee-----eeeeeecCCeeeEEEecC
Q 016982          184 KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA-----QNVAFRDLPLRDVLFVSE  258 (379)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~~i~~~~~s~~  258 (379)
                      ...................+...+.+++|+|++ +|++|+.|+.|++||+.++++..     ..+.+|..+|++++|+|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence            000000000111112223445568999999998 88999999999999998876431     234468889999999999


Q ss_pred             CcEEEEE-eCCC---eEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccc
Q 016982          259 KMVIGVG-FDCN---PMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHV  334 (379)
Q Consensus       259 ~~~l~~~-~d~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  334 (379)
                      |++|+++ .|+.   +++|+.........+.   .....                              ......+.||.
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~---~~~~~------------------------------~~~~~~~~gH~  289 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLS---VPTHS------------------------------SQASLGEFAHS  289 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEEC---BC--------------------------------------CCBSBS
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeec---ccccc------------------------------ccceeeeeccc
Confidence            9999855 4543   7888876654322211   10000                              00111346899


Q ss_pred             cceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          335 NCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       335 ~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      +.|++++ |++++    ++|+|||.||+|++||+.++++++.+
T Consensus       290 ~~V~~l~-fspd~----~~l~S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         290 SWVMSLS-FNDSG----ETLCSAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             SCEEEEE-ECSSS----SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             Cceeeec-cCCCC----CeeEEECCCCEEEEEECCCCCEEEEE
Confidence            9999999 77766    89999999999999999999887664

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-31  Score=226.92  Aligned_cols=253  Identities=11%  Similarity=0.089  Sum_probs=180.3

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCce----EEEEEeccCCCceEEEE------EcC-CCCEEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKW----EKLHVLQKHDQIVSGID------WSV-RSNRIVTVS   73 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~----~~~~~~~~~~~~v~~~~------~~~-~~~~l~~~~   73 (379)
                      ...+|.+.|+++++++  +++++++.|+.|+|||..+.+.    ........|...+..+.      .+. ++..+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            4578999999999875  6899999999999999765321    11222233443332222      221 234678999


Q ss_pred             CCCeEEEEeccCCceeeeEE--------eecCCCceeEEEECCC-----CCEEEEEeCCCeEEEEEeecCCc--------
Q 016982           74 HDRNSYVWNQEGSEWVPTLV--------ILRLNRAALCVQWSPK-----ENKFAVGSGAKTVCICYYEQENN--------  132 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~v~i~~~~~~~~--------  132 (379)
                      .||.|++|++..........        ...+...+..++|.++     +.++++++.||.+++|++.....        
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            99999999986543221111        1123455777888765     46889999999999999864321        


Q ss_pred             ----eeEEEEE--eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEE------e
Q 016982          133 ----WWVSKLI--RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQ------L  200 (379)
Q Consensus       133 ----~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  200 (379)
                          .......  ...+...+.+++|+|++ +|++|+.|+.|++||+                  .+++++..      +
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~------------------~~~~~~~~~~~~~~l  227 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL------------------STLRPLYNFESQHSM  227 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET------------------TTTEEEEEEECCC--
T ss_pred             eccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEee------------------ccccccccccccccc
Confidence                0011111  03445668899999987 8899999999999997                  44444443      4


Q ss_pred             ecCCcceEEEEECCCCCEEEEEcCCC---eEEEEECCCCCceeeee-------------eeecCCeeeEEEecCCcEEE-
Q 016982          201 DLSFSWAFGVKWSPSGNTLAYVGHNS---MIYFVDDVGPSPLAQNV-------------AFRDLPLRDVLFVSEKMVIG-  263 (379)
Q Consensus       201 ~~~~~~v~~~~~sp~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~-------------~~~~~~i~~~~~s~~~~~l~-  263 (379)
                      .+|..+|.+++|+|+|++|++++.|+   .|++||+.++... ..+             .+|...|++++|+|++++|+ 
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~-~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccccceEEEcccccccceeeeecCCCCcceeeecccccceee-eeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence            56888999999999999999999886   5999999876532 333             46889999999999999888 


Q ss_pred             EEeCCCeEEEEecCCC
Q 016982          264 VGFDCNPMVFAADETG  279 (379)
Q Consensus       264 ~~~d~~~~i~~~~~~~  279 (379)
                      ++.|+.|++|+.....
T Consensus       307 ~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         307 AGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             EETTSEEEEEETTTTE
T ss_pred             ECCCCEEEEEECCCCC
Confidence            6678999999987654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-31  Score=226.33  Aligned_cols=267  Identities=10%  Similarity=0.083  Sum_probs=199.0

Q ss_pred             EEEEeccCCCce-EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           46 KLHVLQKHDQIV-SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        46 ~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      +..+|++|...| +|++|  ++++|++|+.|++|++||+.+++.+..+  .+|.++|.+++|+|+ ++|++++.|+.|++
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l--~~H~~~V~~l~~s~~-~~l~s~s~D~~i~i   78 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL--SGHDGGVWALKYAHG-GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE--ECCSSCEEEEEEETT-TEEEEEETTCCEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE--ECCCCCEEEEEEcCC-CEEEEEeccccccc
Confidence            456789998875 56655  5789999999999999999999866655  689999999999985 58999999999999


Q ss_pred             EEeecCCceeEEEEE-eecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccc--------------------
Q 016982          125 CYYEQENNWWVSKLI-RKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEK--------------------  183 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------------------  183 (379)
                      |++.....   .... ...+........+.++++++++++.|+.|++||+..........                    
T Consensus        79 w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          79 WDIKKGCC---THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EETTTTEE---EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             cccccccc---ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence            99887762   2222 12334455667788899999999999999999975321100000                    


Q ss_pred             -------------------------cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc
Q 016982          184 -------------------------KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP  238 (379)
Q Consensus       184 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~  238 (379)
                                               ......+...++.+.....+...+.++.|+|++.++++++.|+.|++||+.++. 
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-  234 (355)
T d1nexb2         156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-  234 (355)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCC-
T ss_pred             eeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccc-
Confidence                                     000000122344555566677788999999999999999999999999998876 


Q ss_pred             eeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeecccccc
Q 016982          239 LAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYG  317 (379)
Q Consensus       239 ~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (379)
                      .+..+.+|...|.+++|++  ++|+ ++.|+.+++|+.+...  .                                   
T Consensus       235 ~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~-----------------------------------  275 (355)
T d1nexb2         235 LMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS--R-----------------------------------  275 (355)
T ss_dssp             EEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC--E-----------------------------------
T ss_pred             ccccccccccccccccccc--ceeeeeecccccccccccccc--e-----------------------------------
Confidence            4578888999999999874  4555 7789999999876432  1                                   


Q ss_pred             CcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCcccccc
Q 016982          318 VGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       318 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~  376 (379)
                                 .+..|...+.++.++++++    .+|++| .||.|++||+++++.++.
T Consensus       276 -----------~~~~~~~~~~~~~~~~~~~----~~l~~g-~d~~i~vwd~~tg~~~~~  318 (355)
T d1nexb2         276 -----------KFSYHHTNLSAITTFYVSD----NILVSG-SENQFNIYNLRSGKLVHA  318 (355)
T ss_dssp             -----------EEEEECTTCCCCCEEEECS----SEEEEE-ETTEEEEEETTTCCBCCS
T ss_pred             -----------ecccccCCceEEEEEcCCC----CEEEEE-eCCEEEEEECCCCCEEEE
Confidence                       1135777788888777665    565554 599999999999988753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.7e-31  Score=227.54  Aligned_cols=317  Identities=13%  Similarity=0.058  Sum_probs=213.1

Q ss_pred             eEEEeCC-CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC--eEEEEeccCCceee
Q 016982           14 TCHAWSP-DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR--NSYVWNQEGSEWVP   90 (379)
Q Consensus        14 ~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~   90 (379)
                      ..-.||| ||+++|+++. |.|++||+.++  ...+ + +|...|.+++|+|||++|++++.+.  .|++||+++++.. 
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~--~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-   79 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGT--YVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-   79 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSS--BEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCC--cEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-
Confidence            3467999 9999999865 79999999887  3333 3 6899999999999999998776553  7999999988743 


Q ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-------
Q 016982           91 TLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-------  163 (379)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-------  163 (379)
                        .+..|...+.+++|+|++++|++++.++.+++|++....   ....+ ..|...+.+++|+|+|++|+.+.       
T Consensus        80 --~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~spdg~~la~~~~~~~~~~  153 (360)
T d1k32a3          80 --KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK---PTVIE-RSREAMITDFTISDNSRFIAYGFPLKHGET  153 (360)
T ss_dssp             --ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEE-ECSSSCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred             --EeeCCCceEEeeeecccccccceeccccccccccccccc---eeeee-ecccccccchhhccceeeeeeeccccccce
Confidence              346788999999999999999999999999999998887   34555 77888999999999999998653       


Q ss_pred             ---CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCc--
Q 016982          164 ---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSP--  238 (379)
Q Consensus       164 ---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~--  238 (379)
                         .++.+++||+                  ..++ ...+..+...+..++|+|+|++|++++.++.+.+||......  
T Consensus       154 ~~~~~~~~~v~d~------------------~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~  214 (360)
T d1k32a3         154 DGYVMQAIHVYDM------------------EGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSF  214 (360)
T ss_dssp             CSCCEEEEEEEET------------------TTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEEC
T ss_pred             eeccccceeeecc------------------ccCc-eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceee
Confidence               3456899996                  3333 344455667788999999999999999999999998654321  


Q ss_pred             ----eeeeeeeecCCeeeEEEecCCcEEEEEe------CCCeEEEEecCCCcEEEEEEecccc---cCCCCC---ccCCC
Q 016982          239 ----LAQNVAFRDLPLRDVLFVSEKMVIGVGF------DCNPMVFAADETGIWTFIKFLDERK---TSSSGP---KYGSQ  302 (379)
Q Consensus       239 ----~~~~~~~~~~~i~~~~~s~~~~~l~~~~------d~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~  302 (379)
                          ....+..+...+..+.|++++..++.+.      ...+..+.........+....+...   ......   .....
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (360)
T d1k32a3         215 EVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA  294 (360)
T ss_dssp             CSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCC
T ss_pred             ccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEec
Confidence                1122333444455566666655443211      0112222222222222221111000   000000   00000


Q ss_pred             cccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccCC
Q 016982          303 FSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~~  378 (379)
                      . .......+.           ........|.+.|.+++ |++||    ++|++++.||.|++||+++++..+.+.
T Consensus       295 ~-~~~~i~~~d-----------~~~~~~~~~~~~v~~~~-~SpDG----~~l~~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         295 P-EKGVLLKYD-----------VKTRKVTEVKNNLTDLR-LSADR----KTVMVRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             C-CCEEEEEEE-----------TTTCCEEEEEEEEEEEE-ECTTS----CEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred             C-CCCEEEEEE-----------CCCCeEEEecCCcCEEE-ECCCC----CEEEEEECCCeEEEEECCCCCcceEEE
Confidence            0 000000000           00112245677899999 88776    999999999999999999987766553

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-31  Score=223.28  Aligned_cols=298  Identities=8%  Similarity=-0.029  Sum_probs=207.2

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCc-eEEEEEeccCCCceEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEK-WEKLHVLQKHDQIVSGIDWSVRS-NRIVTVSHDRNSYVWN   82 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~   82 (379)
                      .+.+|.+.|++|+|+|++++||+|+.||+|+|||+.++. ...+....+|..+|.+++|+|++ .+|++|+.|+.|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            357789999999999999999999999999999997652 23334445699999999999875 5789999999999999


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec--CCcCEEEEEEcCCCcEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR--HDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~  160 (379)
                      +.......... ..+........+.++...+++++.++.+++||++..............  .........+.+.+..++
T Consensus        86 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          86 LIGSPSFQALT-NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             SSSSSSEEECB-SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence            98876444332 223334445556678889999999999999998765432111111011  223445667778889999


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCce
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-SGNTLAYVGHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~v~d~~~~~~~  239 (379)
                      +++.|+.+++||+...               ...............+....+.| ++..+++++.||.+.+|+.......
T Consensus       165 ~~~~d~~i~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         165 VGMNNSQVQWFRLPLC---------------EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             EEESTTEEEEEESSCC---------------TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eecCCCcEEEEecccC---------------cccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            9999999999997311               01111122223334455555554 7788999999999999987653211


Q ss_pred             e--------------eeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcc
Q 016982          240 A--------------QNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFS  304 (379)
Q Consensus       240 ~--------------~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
                      .              .....|...+++++|+|++.+|+ ++.|+.+++|+......  + ..                  
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~--l-~~------------------  288 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK--I-KN------------------  288 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE--E-EE------------------
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcE--E-EE------------------
Confidence            0              11123456789999999999887 67889999999776431  1 11                  


Q ss_pred             cccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCC
Q 016982          305 EAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLES  370 (379)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~  370 (379)
                           +                   ...|...+.  + +++++    ++|++|+.|+.+++|....
T Consensus       289 -----~-------------------~~~~~~~~~--~-~s~~~----~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         289 -----F-------------------AKFNEDSVV--K-IACSD----NILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             -----C-------------------CCCSSSEEE--E-EEECS----SEEEEEEECTHHHHCSSSC
T ss_pred             -----e-------------------cCCCCCEEE--E-EEeCC----CEEEEEEcCCcEEEeeeeC
Confidence                 0                   023444444  4 44444    7899999999998887643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.8e-30  Score=215.98  Aligned_cols=252  Identities=16%  Similarity=0.163  Sum_probs=185.3

Q ss_pred             eEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEE
Q 016982           44 WEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVC  123 (379)
Q Consensus        44 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~  123 (379)
                      .++...|++|.+.|.+ +++++|++|+||+.|++|++||+.+++++..+  .+|...|.+++|+|+  +|++++.|+.++
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~--~~h~~~V~~v~~~~~--~l~s~s~D~~~~   80 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL--VGHTGGVWSSQMRDN--IIISGSTDRTLK   80 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC--CCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE--eCCCCCEEEEEeCCC--ccccceeccccc
Confidence            3667789999999865 36667999999999999999999999866554  789999999999874  999999999999


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEE--------------------------------------EEEcCCCcEEEEeeCC
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTS--------------------------------------VAWHPNNVFLATTSTD  165 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~--------------------------------------~~~~p~~~~l~~~~~d  165 (379)
                      +|+......   .... ..+...+..                                      ..+.+....+++++.+
T Consensus        81 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          81 VWNAETGEC---IHTL-YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             EEETTTTEE---EEEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccc---eecc-cccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            999766542   1111 111111111                                      1222334556677777


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      +.+++||.                  .....+..+..|...+..+.  +++.+|++++.||.|++||++..+ .+.....
T Consensus       157 ~~i~~~d~------------------~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~~  215 (342)
T d2ovrb2         157 FMVKVWDP------------------ETETCLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGN-CIHTLTG  215 (342)
T ss_dssp             SCEEEEEG------------------GGTEEEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCC-EEEEECC
T ss_pred             CeEEEeec------------------ccceeeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccce-eeeEecc
Confidence            77777775                  55667777877776665554  468899999999999999998876 4577888


Q ss_pred             ecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccc
Q 016982          246 RDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVE  324 (379)
Q Consensus       246 ~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (379)
                      |...+.++++++  ++|+ ++.|+.+++|+...........                                       
T Consensus       216 ~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~---------------------------------------  254 (342)
T d2ovrb2         216 HQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQ---------------------------------------  254 (342)
T ss_dssp             CCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEEC---------------------------------------
T ss_pred             cccceeEEecCC--CEEEEEcCCCEEEEEeccccccccccc---------------------------------------
Confidence            888888887765  4555 7789999999977654222111                                       


Q ss_pred             cccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccC
Q 016982          325 SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       325 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                          ....|...+.++. ++      ++++++|+.||.|++||+++++.++.+
T Consensus       255 ----~~~~~~~~~~~~~-~~------~~~~~s~s~Dg~i~iwd~~tg~~i~~~  296 (342)
T d2ovrb2         255 ----GPNKHQSAVTCLQ-FN------KNFVITSSDDGTVKLWDLKTGEFIRNL  296 (342)
T ss_dssp             ----STTSCSSCEEEEE-EC------SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ----ccceeeeceeecc-cC------CCeeEEEcCCCEEEEEECCCCCEEEEE
Confidence                1134677777776 32      268999999999999999999887654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.9e-30  Score=215.74  Aligned_cols=280  Identities=15%  Similarity=0.072  Sum_probs=193.3

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceee-eEEeecCCCceeEEEECCC-CCEEEEEeCCCeE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVP-TLVILRLNRAALCVQWSPK-ENKFAVGSGAKTV  122 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v  122 (379)
                      +.+...++|.+.|++|+|+|++++|++++.|++|++||+..+.... ......|..+|.+++|+|+ +.+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            5677889999999999999999999999999999999998764322 2333468999999999986 5589999999999


Q ss_pred             EEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec
Q 016982          123 CICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL  202 (379)
Q Consensus       123 ~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (379)
                      ++|++.....   .......+........+.++...+++++.++.+++||+....              ...........
T Consensus        82 ~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~--------------~~~~~~~~~~~  144 (342)
T d1yfqa_          82 LKVDLIGSPS---FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG--------------DGVIAVKNLNS  144 (342)
T ss_dssp             EEECSSSSSS---EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT--------------TBCEEEEESCS
T ss_pred             eeeecccccc---cccccccccccccccccccccccccccccccccceeeccccc--------------cceeeeccccc
Confidence            9999988763   222213344445566677788999999999999999973111              01111222222


Q ss_pred             C--CcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceee--eeeeecCCeeeEEEec-CCcEEE-EEeCCCeEEEEec
Q 016982          203 S--FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQ--NVAFRDLPLRDVLFVS-EKMVIG-VGFDCNPMVFAAD  276 (379)
Q Consensus       203 ~--~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~i~~~~~s~-~~~~l~-~~~d~~~~i~~~~  276 (379)
                      +  ......+.+.+++..+++++.|+.|++||+........  ........+....+.+ ++..++ ++.|+.+.+|..+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~  224 (342)
T d1yfqa_         145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEec
Confidence            2  22345567778889999999999999999887654322  1222334455555554 555555 7788889888866


Q ss_pred             CCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEE
Q 016982          277 ETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTT  356 (379)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t  356 (379)
                      ........                    .....+.           .........+|...|++++ |+|++    ++|||
T Consensus       225 ~~~~~~~~--------------------~~~~~~~-----------~~~~~~~~~~~~~~v~~l~-~sp~~----~~las  268 (342)
T d1yfqa_         225 DQGDDYNS--------------------SKRFAFR-----------CHRLNLKDTNLAYPVNSIE-FSPRH----KFLYT  268 (342)
T ss_dssp             TTCCSTTC--------------------TTCEEEE-----------CCCCCTTCCSSCCCEEEEE-ECTTT----CCEEE
T ss_pred             CCcceeec--------------------cccceee-----------eeeeccCCCcccccceeEE-ecCCc----cEEEE
Confidence            43210000                    0000000           0000112256888899999 77665    89999


Q ss_pred             eecCceEEEEeCCCccccccC
Q 016982          357 SGLDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       357 ~~~Dg~v~iW~~~~~~~~~~~  377 (379)
                      ||.||.|++||+.+++.++.+
T Consensus       269 g~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         269 AGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             EETTSCEEEEETTTTEEEEEC
T ss_pred             ECCCCEEEEEECCCCcEEEEe
Confidence            999999999999998887765

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-28  Score=200.50  Aligned_cols=233  Identities=12%  Similarity=0.136  Sum_probs=184.7

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccC
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEG   85 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~   85 (379)
                      ...|...|.++++++++ .+++++.|+++++|+....      .   ....+..+.+++++..++++ .++.+.+|+..+
T Consensus        42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~------~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  110 (287)
T d1pgua2          42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH------E---FGSQPKVASANNDGFTAVLT-NDDDLLILQSFT  110 (287)
T ss_dssp             ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE------E---CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTT
T ss_pred             CCCCCCCEEEEEecCCC-eEEEEeecccccccccccc------c---cccceeeeeeccCCceEEEe-ecccceeeeccc
Confidence            45788999999999764 5788999999999987642      1   23456788899888666665 556788999988


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK-TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      ++....+.   ....+  .+++++++.+++++.++ .+++|++....   ....+...+...+.+++|+|++++|++++.
T Consensus       111 ~~~~~~~~---~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~  182 (287)
T d1pgua2         111 GDIIKSVR---LNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLE---VSFDLKTPLRAKPSYISISPSETYIAAGDV  182 (287)
T ss_dssp             CCEEEEEE---CSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEE---EEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             eeeeeecc---cccee--eeeeccCcceeeeccccceeeeeeccccc---eeeeeeeccCCceeEEEeccCccccccccc
Confidence            88655543   23333  45667788888888765 69999986544   233332567889999999999999999999


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEE-EeecCCcceEEEEECCC----------CCEEEEEcCCCeEEEEEC
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQIL-QLDLSFSWAFGVKWSPS----------GNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~----------~~~l~~~~~d~~i~v~d~  233 (379)
                      ||.|++||+                  ..++... .+..|...|.+++|+|.          +.+|++|+.|+.|++||+
T Consensus       183 dg~i~i~d~------------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~  244 (287)
T d1pgua2         183 MGKILLYDL------------------QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  244 (287)
T ss_dssp             TSCEEEEET------------------TTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             cccccceee------------------cccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC
Confidence            999999997                  3444433 45788899999999875          468999999999999999


Q ss_pred             CCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEe
Q 016982          234 VGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAA  275 (379)
Q Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~  275 (379)
                      +++.+.+..+.+|...|++++|+|++++++++.|+.+++|+.
T Consensus       245 ~~~~~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             SCTTCCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            887767788888999999999999998888999999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=3.1e-28  Score=207.20  Aligned_cols=258  Identities=9%  Similarity=-0.067  Sum_probs=186.4

Q ss_pred             eccCcceeEEEeCCCCcEEEEEecCC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEecc
Q 016982            7 HQFAQCITCHAWSPDHAMVAFCPNNN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus         7 ~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~   84 (379)
                      ..|...|++++|+|||++|++++.+.  .|++||..++   ....+..|...|.+++|+|++++|++++.++.+++|++.
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---cEEEeeCCCceEEeeeecccccccceecccccccccccc
Confidence            46889999999999999998876653  7999999886   445677899999999999999999999999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEe----------CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcC
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGS----------GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHP  154 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  154 (379)
                      +++.....  ..+...+.+++|+|+|++|+.+.          .++.+++|+...++    ...+ ..+...+..++|+|
T Consensus       116 ~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----~~~~-~~~~~~~~~~~~sp  188 (360)
T d1k32a3         116 TGKPTVIE--RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----IFAA-TTENSHDYAPAFDA  188 (360)
T ss_dssp             TCCEEEEE--ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----EEEC-SCSSSBEEEEEECT
T ss_pred             ccceeeee--ecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc----eeee-cccccccccccccC
Confidence            98865544  56788899999999999998654          34568899988765    2333 56777889999999


Q ss_pred             CCcEEEEeeCCCeEEEEecccccccccccc--------------CCCccC-----------CcccceEE----------E
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKK--------------EGTSSD-----------TKFGEQIL----------Q  199 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--------------~~~~~~-----------~~~~~~~~----------~  199 (379)
                      +|++|++++.++.+.+|+............              .....+           ......+.          .
T Consensus       189 dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (360)
T d1k32a3         189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM  268 (360)
T ss_dssp             TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE
T ss_pred             CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeE
Confidence            999999999999999998643221110000              000000           00000111          1


Q ss_pred             eecCCcceEEEEECCCC---CEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEe
Q 016982          200 LDLSFSWAFGVKWSPSG---NTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAA  275 (379)
Q Consensus       200 ~~~~~~~v~~~~~sp~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~  275 (379)
                      +..+.+.+..+.+.+.+   .++++++.++.+++||+.+.+.  .   .+...|.+++|+|||++|+ ++.|+.+++|+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~  343 (360)
T d1k32a3         269 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--T---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL  343 (360)
T ss_dssp             EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE--E---EEEEEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred             eeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE--E---EecCCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence            22222333333333332   3456667789999999887542  2   2345689999999999888 566899999998


Q ss_pred             cCCC
Q 016982          276 DETG  279 (379)
Q Consensus       276 ~~~~  279 (379)
                      +...
T Consensus       344 ~~~~  347 (360)
T d1k32a3         344 EKPE  347 (360)
T ss_dssp             SCTT
T ss_pred             CCCC
Confidence            7644

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=4.3e-26  Score=198.39  Aligned_cols=295  Identities=8%  Similarity=-0.018  Sum_probs=193.2

Q ss_pred             EEeCCCCc--EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEE
Q 016982           16 HAWSPDHA--MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        16 ~~~s~~~~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~   93 (379)
                      +.++.|.+  ++++.+.||.|+|||+.++  +.+.++..|. .+..++|+|||++|++++.|++|++||+.+++......
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~--~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~  100 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE  100 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTC--SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCC--cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence            44555543  5577788999999999997  7788888775 58999999999999999999999999999887544433


Q ss_pred             ee---cCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecC-----------CcCEEEEEEcCCCcE
Q 016982           94 IL---RLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRH-----------DSSVTSVAWHPNNVF  158 (379)
Q Consensus        94 ~~---~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~p~~~~  158 (379)
                      +.   .|...+.+++|+|||+++++++ .++.+.+||.....   +...+ ..+           ......+.+++++..
T Consensus       101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~i~~s~d~~~  176 (426)
T d1hzua2         101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE---PKQIV-STRGMTVDTQTYHPEPRVAAIIASHEHPE  176 (426)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC---EEEEE-ECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred             EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc---eeEEe-eccCCCccceeecCCCceeEEEECCCCCE
Confidence            22   3445667788889999876554 68999999988876   33333 333           334455566666655


Q ss_pred             EEEeeC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCC
Q 016982          159 LATTST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGP  236 (379)
Q Consensus       159 l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~  236 (379)
                      ++.... .+.+.+++..                 ...........+...+..+.|+|++++++++. .+..+.+++..+.
T Consensus       177 ~~~~~~~~~~i~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         177 FIVNVKETGKVLLVNYK-----------------DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             EEEEETTTTEEEEEECS-----------------SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             EEEecCCCCeEEEEEec-----------------cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc
Confidence            554433 3444444431                 11111222234455677888888887766654 3344445543321


Q ss_pred             C-----------------------------------------------------ceeeeeeeecCCeeeEEEecCCcEEE
Q 016982          237 S-----------------------------------------------------PLAQNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       237 ~-----------------------------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                      +                                                     +....+.+|...+..++|+||+++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~  319 (426)
T d1hzua2         240 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLY  319 (426)
T ss_dssp             EEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEE
T ss_pred             cEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEE
Confidence            1                                                     23345566777789999999999998


Q ss_pred             EE--------eCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccccccccccccccccc
Q 016982          264 VG--------FDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVN  335 (379)
Q Consensus       264 ~~--------~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  335 (379)
                      +.        .++++.+|+...............                                     ...+..|..
T Consensus       320 v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~-------------------------------------~~~~~~~~~  362 (426)
T d1hzua2         320 VDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE-------------------------------------WADLGEGAK  362 (426)
T ss_dssp             ECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH-------------------------------------HHCCCSSCC
T ss_pred             EeecCCCCcccCCEEEEEECCCCCcCeEEeccch-------------------------------------hcccCCCCc
Confidence            52        367899998765432111100000                                     001234677


Q ss_pred             ceeeeeeecccCCcccceE-EEe----ecCceEEEEeCCCcccccc
Q 016982          336 CINCIVPLREAGSSRITRF-TTS----GLDGKIVTWDLESQEDLLN  376 (379)
Q Consensus       336 ~v~~~~~~~~~~~~~~~~l-~t~----~~Dg~v~iW~~~~~~~~~~  376 (379)
                      .|..++ |+|||    +++ +++    +.||.|+|||.++++.++.
T Consensus       363 rv~~~~-fSpDG----k~i~vs~~~~~~~~~~i~v~D~~T~k~~~~  403 (426)
T d1hzua2         363 RVVQPE-YNKRG----DEVWFSVWNGKNDSSALVVVDDKTLKLKAV  403 (426)
T ss_dssp             CEEEEE-ECSSS----SEEEEEECCCTTSCCEEEEEETTTTEEEEE
T ss_pred             cEEEEE-ECCCC----CEEEEEEecCCCCCCeEEEEECCCCeEEEE
Confidence            899999 88887    655 443    4689999999999886654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-25  Score=182.46  Aligned_cols=243  Identities=16%  Similarity=0.181  Sum_probs=180.1

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      +.+.....|...|+|++|  ++++|++|+.||+|+|||+.+++++..+  .+|...|.+++|  ++++|++++.|+.+++
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l--~~H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL--TGHTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE--CCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE--ecCCCCEeeeec--ccceeecccccccccc
Confidence            345566778889998765  6899999999999999999999876665  679999999887  5789999999999999


Q ss_pred             EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                      |++..+..   .... ..+..  ....+.+....++++..++.+.+|+...               .........+..|.
T Consensus        80 ~~~~~~~~---~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~  138 (293)
T d1p22a2          80 WDVNTGEM---LNTL-IHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMAS---------------PTDITLRRVLVGHR  138 (293)
T ss_dssp             EESSSCCE---EEEE-CCCCS--CEEEEECCTTEEEEEETTSCEEEEECSS---------------SSCCEEEEEECCCS
T ss_pred             cccccccc---cccc-ccccc--ccccccccccceeecccccceeEeeccc---------------cccccccccccccc
Confidence            99988762   3332 22222  2334555677899999999999999721               01123344556777


Q ss_pred             cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEE
Q 016982          205 SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFI  284 (379)
Q Consensus       205 ~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~  284 (379)
                      ..+..+.+.  ...+++++.|+.+++||+.+.+ .+..+.++...+..+.+++ ..+++++.|+.+++|+........  
T Consensus       139 ~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~--  212 (293)
T d1p22a2         139 AAVNVVDFD--DKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLR--  212 (293)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEE--
T ss_pred             cccccceec--ccccccccCCCceeeecCCCCc-EEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccceeee--
Confidence            788777766  4567888999999999998876 4577777777887777753 234457889999999876543211  


Q ss_pred             EEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982          285 KFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV  364 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~  364 (379)
                                                                  ...+|...|..+.   .+    +.+|++|+.||.|+
T Consensus       213 --------------------------------------------~~~~~~~~v~~~~---~~----~~~l~sg~~dg~i~  241 (293)
T d1p22a2         213 --------------------------------------------VLEGHEELVRCIR---FD----NKRIVSGAYDGKIK  241 (293)
T ss_dssp             --------------------------------------------EECCCSSCEEEEE---CC----SSEEEEEETTSCEE
T ss_pred             --------------------------------------------eecccceeeeecc---cc----ceEEEEEcCCCEEE
Confidence                                                        1135666676544   23    37999999999999


Q ss_pred             EEeCCCc
Q 016982          365 TWDLESQ  371 (379)
Q Consensus       365 iW~~~~~  371 (379)
                      +||+.+.
T Consensus       242 iwd~~~~  248 (293)
T d1p22a2         242 VWDLVAA  248 (293)
T ss_dssp             EEEHHHH
T ss_pred             EEECCCC
Confidence            9998654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.95  E-value=2.1e-26  Score=194.53  Aligned_cols=285  Identities=10%  Similarity=0.008  Sum_probs=197.0

Q ss_pred             EEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeeEE
Q 016982           16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPTLV   93 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~   93 (379)
                      ++|++++++|++++.++.|.+||+.++  +.+.++. .|...+.+++|+|||+++ +++..++.|.+||+.+++....+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC--CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            579999999999999999999999998  6777665 345567899999999987 455678999999999998666554


Q ss_pred             eecCC----CceeEEEECCCCCEEEEEe------------CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCc
Q 016982           94 ILRLN----RAALCVQWSPKENKFAVGS------------GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNV  157 (379)
Q Consensus        94 ~~~~~----~~v~~~~~~~~~~~l~~~~------------~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  157 (379)
                      .....    ..+..++|+|||+++++++            .+..+.+|+..++.........  .....+..+.++++++
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  157 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGS  157 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSC
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEee--eccCceEEEEecCCCE
Confidence            32211    2457899999999988775            3667888887776532122221  2234455667777777


Q ss_pred             EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECC-----------------------
Q 016982          158 FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSP-----------------------  214 (379)
Q Consensus       158 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----------------------  214 (379)
                      .++++   +.+.+|++.                  +++.+..+..+. ....+.++|                       
T Consensus       158 ~~~~~---~~~~~~~~~------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (346)
T d1jmxb_         158 LYVAG---PDIYKMDVK------------------TGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  215 (346)
T ss_dssp             EEEES---SSEEEECTT------------------TCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             EEEeC---CcceEEEcc------------------CCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeee
Confidence            66553   457888863                  233333332211 112222222                       


Q ss_pred             ---CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccc
Q 016982          215 ---SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERK  291 (379)
Q Consensus       215 ---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~  291 (379)
                         ....++++..+..+.+||+.++.........+...+..+.+++++.+++...++.+.+|+....+.....       
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~-------  288 (346)
T d1jmxb_         216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-------  288 (346)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEE-------
T ss_pred             eccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEE-------
Confidence               3333444455667889998887765555666777888999999988888777778999986654322211       


Q ss_pred             cCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCc
Q 016982          292 TSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQ  371 (379)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~  371 (379)
                                                              .+...+.+++ |++|+    ++|++++.||.|++||..++
T Consensus       289 ----------------------------------------~~~~~~~~va-~s~DG----~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         289 ----------------------------------------NLDHTYYCVA-FDKKG----DKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             ----------------------------------------ECSSCCCEEE-ECSSS----SCEEEESBSSEEEEEETTTT
T ss_pred             ----------------------------------------cCCCCEEEEE-EcCCC----CEEEEEeCCCcEEEEECccC
Confidence                                                    1334588899 88776    89999999999999999999


Q ss_pred             cccccCC
Q 016982          372 EDLLNYH  378 (379)
Q Consensus       372 ~~~~~~~  378 (379)
                      +.++.+.
T Consensus       324 ~~i~~i~  330 (346)
T d1jmxb_         324 EKVKNIK  330 (346)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            9887664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1.1e-23  Score=174.29  Aligned_cols=269  Identities=12%  Similarity=0.121  Sum_probs=194.7

Q ss_pred             EEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeeEEeecCCCceeEE
Q 016982           26 AFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCV  104 (379)
Q Consensus        26 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~  104 (379)
                      ++++.++.|.+||++++  +.+.++... ..+..++|+|+|++| ++++.++.|.+||+.+++.+..+.  . ...+..+
T Consensus         6 V~~~~~~~v~v~D~~t~--~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~--~-~~~~~~~   79 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN--KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--A-GSSPQGV   79 (301)
T ss_dssp             EEETTTTEEEEEETTTT--EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--C-SSSEEEE
T ss_pred             EEECCCCEEEEEECCCC--eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee--c-ccccccc
Confidence            45668899999999998  666777644 456899999999987 466688999999999998666553  2 3457899


Q ss_pred             EECCCCCEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeCCCeEEEEecccccccccc
Q 016982          105 QWSPKENKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTSTDGKCRVFSTFIKGVDIKE  182 (379)
Q Consensus       105 ~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~  182 (379)
                      .|++++..+++. ..++.+.+|+.....   ....+  .+.....++.|+|+++.++ ++..++.+.+|+.         
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~---------  145 (301)
T d1l0qa2          80 AVSPDGKQVYVTNMASSTLSVIDTTSNT---VAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT---------  145 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTE---EEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEET---------
T ss_pred             ccccccccccccccccceeeecccccce---eeeec--cccccceEEEeecCCCeeeeeeccccceeeeec---------
Confidence            999999866654 457789999988775   34444  4556778999999998765 5556888999986         


Q ss_pred             ccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-CeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcE
Q 016982          183 KKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMV  261 (379)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  261 (379)
                               .+...+..+..+ ..+..++++|++..+++++.+ +.+.+|+..... ...... ....+..++|++++..
T Consensus       146 ---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~g~~  213 (301)
T d1l0qa2         146 ---------VTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVK-VEAAPSGIAVNPEGTK  213 (301)
T ss_dssp             ---------TTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSEEEEEEECTTSSE
T ss_pred             ---------cccceeeecccC-CCceEEEeeccccceeeeccccccccccccccee-eeeccc-ccCCcceeeccccccc
Confidence                     556666666554 447889999999988877654 667777765543 334433 3455778999999987


Q ss_pred             EE-EEeC---CCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccce
Q 016982          262 IG-VGFD---CNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCI  337 (379)
Q Consensus       262 l~-~~~d---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  337 (379)
                      ++ ++.+   +.+.+|+.....   +...+                                            .+...+
T Consensus       214 ~~v~~~~~~~~~v~v~D~~t~~---~~~~~--------------------------------------------~~~~~~  246 (301)
T d1l0qa2         214 AYVTNVDKYFNTVSMIDTGTNK---ITARI--------------------------------------------PVGPDP  246 (301)
T ss_dssp             EEEEEECSSCCEEEEEETTTTE---EEEEE--------------------------------------------ECCSSE
T ss_pred             cccccccceeeeeeeeecCCCe---EEEEE--------------------------------------------cCCCCE
Confidence            65 3333   457777765432   21111                                            123457


Q ss_pred             eeeeeecccCCcccceE-EEeecCceEEEEeCCCccccccCC
Q 016982          338 NCIVPLREAGSSRITRF-TTSGLDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       338 ~~~~~~~~~~~~~~~~l-~t~~~Dg~v~iW~~~~~~~~~~~~  378 (379)
                      .+++ +++++    ++| ++++.|+.|++||+++++.++.+.
T Consensus       247 ~~va-~spdg----~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         247 AGIA-VTPDG----KKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EEEE-ECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEE-EeCCC----CEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            8899 88776    654 788899999999999998887653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=6.8e-25  Score=184.52  Aligned_cols=276  Identities=10%  Similarity=-0.008  Sum_probs=194.2

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEecc--CCCceEEEEEcCCCCEE-EEEeCCCeEEEEeccCCceeeeEEeecC--
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQK--HDQIVSGIDWSVRSNRI-VTVSHDRNSYVWNQEGSEWVPTLVILRL--   97 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~--   97 (379)
                      ++|++++.|++|++||+++.  +.+..+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+.....  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCC--eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999998  66666654  44567899999999987 4567889999999999987666543221  


Q ss_pred             -CCceeEEEECCCCCEEEEEeC------------CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982           98 -NRAALCVQWSPKENKFAVGSG------------AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus        98 -~~~v~~~~~~~~~~~l~~~~~------------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                       ...+..++|+|+++.++++..            +..+.+||..+..   ....+  .+...+..++|+|+++++++++.
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~--~~~~~~~~~~~s~dg~~l~~~~~  154 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS---RRKAF--EAPRQITMLAWARDGSKLYGLGR  154 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE---EEEEE--ECCSSCCCEEECTTSSCEEEESS
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe---EEEec--cccCCceEEEEcCCCCEEEEEcC
Confidence             234568999999999988763            5677788877765   34444  34556788999999999998865


Q ss_pred             CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCc-----------------------ceEEEEECCCCCEEEE
Q 016982          165 DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFS-----------------------WAFGVKWSPSGNTLAY  221 (379)
Q Consensus       165 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~v~~~~~sp~~~~l~~  221 (379)
                      +  +.+||..                  +++....+..+..                       .........+......
T Consensus       155 ~--~~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T d1pbyb_         155 D--LHVMDPE------------------AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             S--EEEEETT------------------TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             C--cceeeee------------------cCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeee
Confidence            4  6788863                  2222222221110                       0111111222222223


Q ss_pred             EcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCC
Q 016982          222 VGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGS  301 (379)
Q Consensus       222 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (379)
                      ...++.+.+||...+.........+...+..+.+++++.++++. ++.+.+|+..........                 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~-----------------  276 (337)
T d1pbyb_         215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRV-----------------  276 (337)
T ss_dssp             GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEE-----------------
T ss_pred             cccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEE-----------------
Confidence            34456799999988775545555667778889999999988755 578999987664322211                 


Q ss_pred             CcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEEeCCCccccccCC
Q 016982          302 QFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTWDLESQEDLLNYH  378 (379)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW~~~~~~~~~~~~  378 (379)
                                                    .+...+.+++ |+++|    ++|++++.|+.|++||..+++.+..+.
T Consensus       277 ------------------------------~~~~~~~~~~-~s~dG----~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         277 ------------------------------PLPHSYYSVN-VSTDG----STVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             ------------------------------ECSSCCCEEE-ECTTS----CEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ------------------------------cCCCCEEEEE-ECCCC----CEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence                                          2445678898 88776    899999999999999999998887654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=3.9e-24  Score=185.62  Aligned_cols=324  Identities=10%  Similarity=-0.042  Sum_probs=200.7

Q ss_pred             CCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe---e
Q 016982           19 SPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI---L   95 (379)
Q Consensus        19 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~   95 (379)
                      +++.-++++.+.+|.|.|||..++  +.+..+..+. .+..++|+|||++|++++.|+.+.+||+.+++......+   .
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~--~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTY--EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTC--CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCC--cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            333344688889999999999998  7788888764 689999999999999999999999999988763332222   2


Q ss_pred             cCCCceeEEEECCCCCEE-EEEeCCCeEEEEEeecCCceeEEEEEe----------ecCCcCEEEEEEcCCCcEE-EEee
Q 016982           96 RLNRAALCVQWSPKENKF-AVGSGAKTVCICYYEQENNWWVSKLIR----------KRHDSSVTSVAWHPNNVFL-ATTS  163 (379)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~p~~~~l-~~~~  163 (379)
                      .+.+.+.+..|+|||++| +++..++.+++||..+++.   ...+.          ..+......+.++|++..+ ++..
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP---KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE---EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc---eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc
Confidence            344556677788999976 6677799999999988773   33321          2345567788999999765 5566


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEee-cCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~  241 (379)
                      .++.+.+||.                  ...+...... .+...+..++|+|+|+++++++ .++.+.++|..+.+. ..
T Consensus       183 ~~~~i~~~d~------------------~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~-~~  243 (432)
T d1qksa2         183 ETGKILLVDY------------------TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL-VA  243 (432)
T ss_dssp             TTTEEEEEET------------------TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE-EE
T ss_pred             cCCeEEEEEc------------------cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceE-EE
Confidence            7899999986                  3333332222 2345678999999999877766 456888999877643 23


Q ss_pred             eeee-----ecCCeeeEEEecCCcEEEEEe--CCCeEEEEecCCC----cEEEEEEecccccCCCCCccCCCcccccce-
Q 016982          242 NVAF-----RDLPLRDVLFVSEKMVIGVGF--DCNPMVFAADETG----IWTFIKFLDERKTSSSGPKYGSQFSEAFGK-  309 (379)
Q Consensus       242 ~~~~-----~~~~i~~~~~s~~~~~l~~~~--d~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  309 (379)
                      .+..     +........+...+...+...  ++.+.+|......    .|++..........    .......+.... 
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~----~~~~~s~p~~~~l  319 (432)
T d1qksa2         244 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG----SLFIKTHPNSQYL  319 (432)
T ss_dssp             EEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC----CCCEECCTTCSEE
T ss_pred             EeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCC----eEEEEecCCccce
Confidence            3221     222233344444455555443  5667777654322    23443332211100    000000010000 


Q ss_pred             ------------------eeccccccCccccc-c----cccccccccccceeeeeeecccCCcccceEEEee-----cCc
Q 016982          310 ------------------LYGQSKYGVGNDAV-E----SSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG-----LDG  361 (379)
Q Consensus       310 ------------------~~~~~~~~~~~~~~-~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~-----~Dg  361 (379)
                                        +..........+.. .    .....+..|...|.+++ |++||    ++++.+.     .||
T Consensus       320 w~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~-fS~DG----~~v~~S~~~~~~~~g  394 (432)
T d1qksa2         320 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE-FNKDG----TEVWFSVWNGKDQES  394 (432)
T ss_dssp             EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE-ECTTS----SEEEEEEECCTTSCC
T ss_pred             eecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeE-ECCCC----CEEEEEEecCCCCCC
Confidence                              00000000000000 0    00113346777899999 88877    7664443     578


Q ss_pred             eEEEEeCCCcccccc
Q 016982          362 KIVTWDLESQEDLLN  376 (379)
Q Consensus       362 ~v~iW~~~~~~~~~~  376 (379)
                      .|+|||.++++..+.
T Consensus       395 ~i~i~D~~T~k~~~~  409 (432)
T d1qksa2         395 ALVVVDDKTLELKHV  409 (432)
T ss_dssp             EEEEEETTTTEEEEE
T ss_pred             cEEEEECCCceEEeE
Confidence            999999999887554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.7e-23  Score=181.83  Aligned_cols=272  Identities=8%  Similarity=0.013  Sum_probs=183.4

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEe---ccCCCceEEEEEcCCCCEEEE-EeCCCeEEEEeccC
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVL---QKHDQIVSGIDWSVRSNRIVT-VSHDRNSYVWNQEG   85 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~vw~~~~   85 (379)
                      ...+..++|||||++|++++.|+.|++||+.+++......+   .+|.+.+.+++|+|||+++++ +..++.+.+||..+
T Consensus        61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            45689999999999999999999999999998754444433   356667778889999998754 45789999999999


Q ss_pred             CceeeeEEee---------cCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCC
Q 016982           86 SEWVPTLVIL---------RLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        86 ~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      +.........         .+......+.+++++..++.... .+.+.+++.......  .... ..+...+..+.|+|+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~  217 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL--TVTS-IGAAPFLADGGWDSS  217 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSC--EEEE-EECCSSEEEEEECTT
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccce--eeEE-eccCCccEeeeECCC
Confidence            8765544211         12233455666666666555444 344545444443321  1111 467778899999999


Q ss_pred             CcEEEEeeC-CCeEEEEeccccccccccc------------------------------------cCCCccCCcccceEE
Q 016982          156 NVFLATTST-DGKCRVFSTFIKGVDIKEK------------------------------------KEGTSSDTKFGEQIL  198 (379)
Q Consensus       156 ~~~l~~~~~-d~~i~v~d~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~  198 (379)
                      +++++++.. +..+.+++...........                                    ...........+...
T Consensus       218 g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~  297 (426)
T d1hzua2         218 HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  297 (426)
T ss_dssp             SCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEE
T ss_pred             CcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeE
Confidence            988777654 5567788765321110000                                    000000122346677


Q ss_pred             EeecCCcceEEEEECCCCCEEEE-------EcCCCeEEEEECCCCCceeeee--------eeecCCeeeEEEecCCcEEE
Q 016982          199 QLDLSFSWAFGVKWSPSGNTLAY-------VGHNSMIYFVDDVGPSPLAQNV--------AFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       199 ~~~~~~~~v~~~~~sp~~~~l~~-------~~~d~~i~v~d~~~~~~~~~~~--------~~~~~~i~~~~~s~~~~~l~  263 (379)
                      .+.+|...+..++|+|++++|++       ++.+++|+|||+.+++......        ..+...+.+++|||||+++.
T Consensus       298 ~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             EEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             EEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence            88899999999999999999995       3457899999998876542221        23455688999999998664


Q ss_pred             -EE-----eCCCeEEEEecCCCcEEEE
Q 016982          264 -VG-----FDCNPMVFAADETGIWTFI  284 (379)
Q Consensus       264 -~~-----~d~~~~i~~~~~~~~~~~~  284 (379)
                       ++     .++.|++|+....+.|+.+
T Consensus       378 vs~~~~~~~~~~i~v~D~~T~k~~~~i  404 (426)
T d1hzua2         378 FSVWNGKNDSSALVVVDDKTLKLKAVV  404 (426)
T ss_dssp             EEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred             EEEecCCCCCCeEEEEECCCCeEEEEE
Confidence             22     3667999998776655554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=2.3e-20  Score=154.02  Aligned_cols=239  Identities=15%  Similarity=0.140  Sum_probs=178.3

Q ss_pred             cCcceeEEEeCCCCcEEE-EEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEE-EEeCCCeEEEEeccCC
Q 016982            9 FAQCITCHAWSPDHAMVA-FCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIV-TVSHDRNSYVWNQEGS   86 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~   86 (379)
                      ....+..++|+|||++|+ +++.++.|++||+.++  +.+..+..+.. +..++|++++..++ ++..++.+.+|+..++
T Consensus        30 ~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (301)
T d1l0qa2          30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC--ceeeeeecccc-ccccccccccccccccccccceeeecccccc
Confidence            456688999999999875 5667899999999987  67778877654 58899999998665 4557788999999998


Q ss_pred             ceeeeEEeecCCCceeEEEECCCCCEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC
Q 016982           87 EWVPTLVILRLNRAALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD  165 (379)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  165 (379)
                      +....+   .+...+.++.|+|+++.++.. ..++.+.+|+..+..   ....+  .+...+..+.++|+++.+++++.+
T Consensus       107 ~~~~~~---~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         107 TVAGTV---KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA---VINTV--SVGRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEEEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEE--ECCSSEEEEEECTTSSEEEEEETT
T ss_pred             eeeeec---cccccceEEEeecCCCeeeeeeccccceeeeeccccc---eeeec--ccCCCceEEEeeccccceeeeccc
Confidence            755544   345677899999999887655 457889999888776   33443  445567899999999888777765


Q ss_pred             -CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc---CCCeEEEEECCCCCceee
Q 016982          166 -GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG---HNSMIYFVDDVGPSPLAQ  241 (379)
Q Consensus       166 -~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~v~d~~~~~~~~~  241 (379)
                       +.+.+|+.                  ...+....+.. ...+..++|++++..++.++   .++.|++||+.+++ +..
T Consensus       179 ~~~~~~~~~------------------~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-~~~  238 (301)
T d1l0qa2         179 SMSISVIDT------------------VTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-ITA  238 (301)
T ss_dssp             TTEEEEEET------------------TTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-EEE
T ss_pred             ccccccccc------------------cceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCe-EEE
Confidence             55666764                  33344444433 45578899999999887654   34689999998876 335


Q ss_pred             eeeeecCCeeeEEEecCCcEE-EE-EeCCCeEEEEecCCC
Q 016982          242 NVAFRDLPLRDVLFVSEKMVI-GV-GFDCNPMVFAADETG  279 (379)
Q Consensus       242 ~~~~~~~~i~~~~~s~~~~~l-~~-~~d~~~~i~~~~~~~  279 (379)
                      .+.. ...+.+++|+|||++| ++ +.++.+.+|+.....
T Consensus       239 ~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         239 RIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            5543 4567999999999865 34 457889999987653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.1e-20  Score=154.76  Aligned_cols=278  Identities=12%  Similarity=0.050  Sum_probs=183.6

Q ss_pred             EEEEEecCCeEEEEEecCCc-eEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeE-EeecCCCc
Q 016982           24 MVAFCPNNNEVHIYKLIQEK-WEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTL-VILRLNRA  100 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~-~~~~~~~~  100 (379)
                      .+++++.++.|++|++.... .+.+..+ .|.+.+..|+|+|||++|++++ .|+.|.+|++......... ........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            45677789999999997542 3444444 4778899999999999986555 5899999999876433222 22234566


Q ss_pred             eeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC-CCeEEEEecccccc
Q 016982          101 ALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTST-DGKCRVFSTFIKGV  178 (379)
Q Consensus       101 v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~~  178 (379)
                      +..++|+|||++|++++. ++.+.+|+............  ..+...+.++.++|++++++.++. +..+.+|+..    
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~----  158 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVS----  158 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC----
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccc--cCCCccceEEEeeecceeeeccccccceeeEEEec----
Confidence            788999999999999875 67899998877653222222  456677889999999998887764 5678899862    


Q ss_pred             ccccccCCCccCCcccceEE-----EeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCceee---eee-----
Q 016982          179 DIKEKKEGTSSDTKFGEQIL-----QLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSPLAQ---NVA-----  244 (379)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~~~~---~~~-----  244 (379)
                                   .......     ...........++|++++.+++... ..+...+++.........   ...     
T Consensus       159 -------------~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  225 (333)
T d1ri6a_         159 -------------DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN  225 (333)
T ss_dssp             -------------TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             -------------cCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecC
Confidence                         1111111     1122334568899999998876554 567788888655432211   111     


Q ss_pred             -eecCCeeeEEEecCCcEEEE--EeCCCeEEEEecCCCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCccc
Q 016982          245 -FRDLPLRDVLFVSEKMVIGV--GFDCNPMVFAADETGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGND  321 (379)
Q Consensus       245 -~~~~~i~~~~~s~~~~~l~~--~~d~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (379)
                       ........++++++++++..  ..++.+.+|..+..+........                                  
T Consensus       226 ~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  271 (333)
T d1ri6a_         226 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF----------------------------------  271 (333)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE----------------------------------
T ss_pred             CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE----------------------------------
Confidence             11234567889999987663  34567888887754422211100                                  


Q ss_pred             ccccccccccccccceeeeeeecccCCcccceEEEe-ecCceEEEEeCC
Q 016982          322 AVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTS-GLDGKIVTWDLE  369 (379)
Q Consensus       322 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~-~~Dg~v~iW~~~  369 (379)
                               ..+...+.+++ |++||    ++|+++ +.++.|++|++.
T Consensus       272 ---------~~~~~~p~~~a-~spDG----k~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         272 ---------QPTETQPRGFN-VDHSG----KYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             ---------EECSSSCCCEE-ECTTS----SEEEEECTTTCEEEEEEEE
T ss_pred             ---------eCCCCCeeEEE-EeCCC----CEEEEEECCCCeEEEEEEE
Confidence                     12334567788 88776    766555 567999999664

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=1.7e-19  Score=153.53  Aligned_cols=302  Identities=9%  Similarity=-0.078  Sum_probs=185.1

Q ss_pred             eeccCcceeEEEeCCCCcEEEEE-----ecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-------
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFC-----PNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-------   73 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------   73 (379)
                      ...+..++.+++++|||+.+++.     +..+.|.+||..++  +.+..+..+..+  .++|+|||++|++++       
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccc
Confidence            34578899999999999998764     23467999998887  677777766543  799999999998875       


Q ss_pred             ---CCCeEEEEeccCCceeeeEEeecCC-----CceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecC
Q 016982           74 ---HDRNSYVWNQEGSEWVPTLVILRLN-----RAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRH  143 (379)
Q Consensus        74 ---~d~~i~vw~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~  143 (379)
                         .++.|.+||..+++....+......     .....+.|+++++.+++...  ++.+.+|+.....   ..     .+
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~---~~-----~~  163 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS---DD-----QL  163 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe---EE-----EE
Confidence               3578999999999876655321111     12355788888887666543  5567787776654   11     23


Q ss_pred             CcCEEEEEEcCCCcE-EEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec------CCcceEEEEECCCC
Q 016982          144 DSSVTSVAWHPNNVF-LATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL------SFSWAFGVKWSPSG  216 (379)
Q Consensus       144 ~~~v~~~~~~p~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~  216 (379)
                      .....++.++|+++. +++.+.|+.+.+|+.                  ...........      .......+.+++++
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH------------------AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEc------------------CCceeeEEEeeeccccCccceeeeEEECCCc
Confidence            344568889999864 567888999999996                  23333322211      12223456667766


Q ss_pred             CEEEEEcCCCeEEEEECCCCCcee-eeeeeecC----------CeeeEEEecCCcEEEE-EeCCCeEEEEecCCCcEEEE
Q 016982          217 NTLAYVGHNSMIYFVDDVGPSPLA-QNVAFRDL----------PLRDVLFVSEKMVIGV-GFDCNPMVFAADETGIWTFI  284 (379)
Q Consensus       217 ~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~----------~i~~~~~s~~~~~l~~-~~d~~~~i~~~~~~~~~~~~  284 (379)
                      .++ ..+.++.+.+|+........ .....+..          ....+++++++..++. ..++...+....... ..+.
T Consensus       226 ~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-v~~~  303 (373)
T d2madh_         226 RIV-WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE-VTSV  303 (373)
T ss_pred             eEE-EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe-EEEE
Confidence            555 45678899999977654221 11111112          2334555555554442 222221111111110 0100


Q ss_pred             EEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEE
Q 016982          285 KFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIV  364 (379)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~  364 (379)
                      .   ....               ...                  ....+...+.+++ |++||  +..++++++.|+.|+
T Consensus       304 d---~~t~---------------~~~------------------~~~~~~~~~~~~a-~spDG--~~~l~vt~~~d~~v~  344 (373)
T d2madh_         304 T---GLVG---------------QTS------------------SQISLGHDVDAIS-VAQDG--GPDLYALSAGTEVLH  344 (373)
T ss_pred             E---CCCC---------------cEE------------------EEecCCCCeeEEE-ECCCC--CEEEEEEeCCCCeEE
Confidence            0   0000               000                  0013556688898 88877  112568899999999


Q ss_pred             EEeCCCccccccCC
Q 016982          365 TWDLESQEDLLNYH  378 (379)
Q Consensus       365 iW~~~~~~~~~~~~  378 (379)
                      +||+.+++.++.+.
T Consensus       345 v~D~~tg~~~~~~~  358 (373)
T d2madh_         345 IYDAGAGDQDQSTV  358 (373)
T ss_pred             EEECCCCCEEEEEC
Confidence            99999999887663

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=3.7e-20  Score=160.34  Aligned_cols=194  Identities=13%  Similarity=-0.070  Sum_probs=140.3

Q ss_pred             cCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEe--
Q 016982           63 SVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIR--  140 (379)
Q Consensus        63 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--  140 (379)
                      +++.-++++.+.+++|.+||..+++.+..+..  + ..+..++|+|||+++++++.|+.+++||+.+.+.... ..+.  
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~--g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~-~~i~~~  104 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT--G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-AEIKIG  104 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC--S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE-EEEECC
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeC--C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE-EEEecC
Confidence            33333468899999999999999998777742  3 4689999999999999999999999999988763222 2221  


Q ss_pred             ecCCcCEEEEEEcCCCcEE-EEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC-----------CcceE
Q 016982          141 KRHDSSVTSVAWHPNNVFL-ATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS-----------FSWAF  208 (379)
Q Consensus       141 ~~~~~~v~~~~~~p~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v~  208 (379)
                      ..|.+.+.+..|+|||++| ++++.++.+++||.                  .+++++..+..+           .....
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~------------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG------------------ETLEPKKIQSTRGMTYDEQEYHPEPRVA  166 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET------------------TTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeC------------------ccccceeeeccCCccccceeccCCCcee
Confidence            3455666777888999876 67788999999997                  555555554332           34466


Q ss_pred             EEEECCCCCEEE-EEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEe-CCCeEEEEecCC
Q 016982          209 GVKWSPSGNTLA-YVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGF-DCNPMVFAADET  278 (379)
Q Consensus       209 ~~~~sp~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~-d~~~~i~~~~~~  278 (379)
                      .+.++|+|..++ +...++.|.+||..+.+......-.+...+..++|+|+|++++ ++. ++.+.+++....
T Consensus       167 ~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            789999998764 5567899999998876543222223456688999999999776 333 335555555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=8e-19  Score=146.81  Aligned_cols=269  Identities=12%  Similarity=0.066  Sum_probs=181.1

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEe-cCCeEEEEEecCCceE--EEEEeccCCCceEEEEEcCCCCEEEEEeC-CCeEEEE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCP-NNNEVHIYKLIQEKWE--KLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DRNSYVW   81 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw   81 (379)
                      ...|.+.|..++|+|||++|++++ .|+.|++|++......  .... ..+...+..++|+|||++|++++. ++.+.+|
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~-~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE-SALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-EECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee-cccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            457889999999999999986555 4899999999765322  2222 224445678999999999988874 6789999


Q ss_pred             eccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEE--EEeecCCcCEEEEEEcCCCcE
Q 016982           82 NQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSK--LIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      +..............+...+.++.++|+++++++++. +..+.+|+...........  ............++|++++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee
Confidence            9988876666655667788899999999998888775 5678899887665322111  111334556788999999987


Q ss_pred             EEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEe---ecCCcceEEEEECCCCCEEEEE-cCCCeEEEEEC
Q 016982          159 LATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL---DLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDD  233 (379)
Q Consensus       159 l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~  233 (379)
                      ++... ..+...+++........           .....+...   .........+++++++++++.. ..++.+.+|++
T Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~  259 (333)
T d1ri6a_         191 AYCVNELNSSVDVWELKDPHGNI-----------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSV  259 (333)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCC-----------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEeeccccCceEEEeecccccce-----------eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEE
Confidence            76554 56677888752111000           000111111   1123456778999999876654 56789999988


Q ss_pred             CCCCceeeee--eeecCCeeeEEEecCCcEEEEE-e-CCCeEEEEecC-CCcEEEEEE
Q 016982          234 VGPSPLAQNV--AFRDLPLRDVLFVSEKMVIGVG-F-DCNPMVFAADE-TGIWTFIKF  286 (379)
Q Consensus       234 ~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~-~-d~~~~i~~~~~-~~~~~~~~~  286 (379)
                      ..........  ......+.+++|+|||++|+++ . ++.+.+|..+. .+..+....
T Consensus       260 ~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~  317 (333)
T d1ri6a_         260 SEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGR  317 (333)
T ss_dssp             CTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEE
T ss_pred             cCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEe
Confidence            7654332222  2234567899999999987644 3 57899998775 454444443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=2.6e-19  Score=151.25  Aligned_cols=286  Identities=12%  Similarity=-0.017  Sum_probs=177.8

Q ss_pred             cceeEEEeCCCCcEEEEEe-----cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------CC
Q 016982           11 QCITCHAWSPDHAMVAFCP-----NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------HD   75 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d   75 (379)
                      +|+.-.+.+||++++++..     .++.|.+||..++  +.+.++..+..+  .++|+|||++|++++          .|
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg--~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC--cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCC
Confidence            3455557799999987653     3567999999988  677777765444  799999999887653          47


Q ss_pred             CeEEEEeccCCceeeeEEeecC-----CCceeEEEECCCCCEEEEEe--CCCeEEEEEeecCCceeEEEEEeecCC----
Q 016982           76 RNSYVWNQEGSEWVPTLVILRL-----NRAALCVQWSPKENKFAVGS--GAKTVCICYYEQENNWWVSKLIRKRHD----  144 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~----  144 (379)
                      +.|.+||+.+++....+.....     ......++|+|+++.+++++  .+..+.+|+..++.   ....+ ..+.    
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~  153 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA---FKRML-DVPDCYHI  153 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE---EEEEE-ECCSEEEE
T ss_pred             CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc---EeeEE-ecCCcceE
Confidence            8899999999987666543211     12346789999999888775  35678889887776   23333 2211    


Q ss_pred             ---cCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEE
Q 016982          145 ---SSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLA  220 (379)
Q Consensus       145 ---~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  220 (379)
                         .....+.++++++.++... .++.+.+++.                  ....     ..+...+....+++++..++
T Consensus       154 ~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~------------------~~~~-----~~~~~~~~~~~~~~~~~~~~  210 (355)
T d2bbkh_         154 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT------------------EVFH-----PEDEFLINHPAYSQKAGRLV  210 (355)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEEEEC------------------CCCS-----CTTSCBCSCCEEETTTTEEE
T ss_pred             eecCCcceEEEcCCCCEEEEEecCCCeEEEEec------------------cccc-----ceecceeeeccccCCCCeEE
Confidence               1223345555555444332 2333444432                  1110     11223345567778888888


Q ss_pred             EEcCCCeEEEEECCCCCcee-eeeeee----------cCCeeeEEEecCCcEEEE-EeCC----------CeEEEEecCC
Q 016982          221 YVGHNSMIYFVDDVGPSPLA-QNVAFR----------DLPLRDVLFVSEKMVIGV-GFDC----------NPMVFAADET  278 (379)
Q Consensus       221 ~~~~d~~i~v~d~~~~~~~~-~~~~~~----------~~~i~~~~~s~~~~~l~~-~~d~----------~~~i~~~~~~  278 (379)
                      .++.++.+++|++..+.... .....+          ......+++++++..+.. ..++          .+.+|+....
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~  290 (355)
T d2bbkh_         211 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  290 (355)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence            99999999999988765321 111111          122345677777766552 2211          2444443332


Q ss_pred             CcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEee
Q 016982          279 GIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSG  358 (379)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~  358 (379)
                      .....                                               ..+...+.+++ +++|+  +..++++++
T Consensus       291 ~~~~~-----------------------------------------------~~~~~~~~~~a-~spDG--~~~l~v~~~  320 (355)
T d2bbkh_         291 ERLAK-----------------------------------------------FEMGHEIDSIN-VSQDE--KPLLYALST  320 (355)
T ss_dssp             CEEEE-----------------------------------------------EEEEEEECEEE-ECCSS--SCEEEEEET
T ss_pred             cEEEE-----------------------------------------------ecCCCCEEEEE-EcCCC--CeEEEEEEC
Confidence            21110                                               01334578888 88776  112567888


Q ss_pred             cCceEEEEeCCCccccccC
Q 016982          359 LDGKIVTWDLESQEDLLNY  377 (379)
Q Consensus       359 ~Dg~v~iW~~~~~~~~~~~  377 (379)
                      .|+.|++||+.+++.++.+
T Consensus       321 ~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         321 GDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             TTTEEEEEETTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEE
Confidence            9999999999999988765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=2.6e-19  Score=149.88  Aligned_cols=208  Identities=13%  Similarity=0.057  Sum_probs=153.1

Q ss_pred             cCcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCC-----CceEEEEEcCCCCEEEEEe---------
Q 016982            9 FAQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHD-----QIVSGIDWSVRSNRIVTVS---------   73 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~---------   73 (379)
                      +...+.+++|+|||+++ ++++.++.|.+||+.++  +.+..+..+.     ..+..++|+|++++++++.         
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC--cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence            45668899999999987 45677899999999987  5555555443     2345799999999988775         


Q ss_pred             ---CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee----------------
Q 016982           74 ---HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW----------------  134 (379)
Q Consensus        74 ---~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~----------------  134 (379)
                         .+..+.+||..+++....+.   ....+..++|+|+|+++++++.+  +.+||..+.....                
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  184 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFE---APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPD  184 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEE---CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCB
T ss_pred             ccccccceeeccccCCeEEEecc---ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCC
Confidence               35678999999987655543   45678899999999999998754  5566654322000                


Q ss_pred             -----------------------------------------------EEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCe
Q 016982          135 -----------------------------------------------VSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGK  167 (379)
Q Consensus       135 -----------------------------------------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~  167 (379)
                                                                     ....+ ..+...+..+.++|++.+++.+  ++.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~  261 (337)
T d1pbyb_         185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV-RIMDVFYFSTAVNPAKTRAFGA--YNV  261 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE-EECSSCEEEEEECTTSSEEEEE--ESE
T ss_pred             cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe-cCCCcceEEEEecccceEEEEc--ccc
Confidence                                                           00011 2344556677788888877665  578


Q ss_pred             EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeeee
Q 016982          168 CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR  246 (379)
Q Consensus       168 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  246 (379)
                      +++||+                  .+++.+..+.. ...+.+++|+|||++|++++.++.|++||..+.+. +..++..
T Consensus       262 i~v~d~------------------~~~~~~~~~~~-~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~-v~~i~~~  320 (337)
T d1pbyb_         262 LESFDL------------------EKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK-KGQVDLP  320 (337)
T ss_dssp             EEEEET------------------TTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE-EEEEECG
T ss_pred             EEEEEC------------------CCCcEEEEEcC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE-EEEEECC
Confidence            999997                  66777777654 56688999999999999999999999999998764 4555543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=4.6e-18  Score=142.73  Aligned_cols=259  Identities=11%  Similarity=-0.001  Sum_probs=162.3

Q ss_pred             ccCcceeEEEeCCCCcEE-EEEecCCeEEEEEecCCceEEEEEeccCC------CceEEEEEcCCCCEEEEEe-------
Q 016982            8 QFAQCITCHAWSPDHAMV-AFCPNNNEVHIYKLIQEKWEKLHVLQKHD------QIVSGIDWSVRSNRIVTVS-------   73 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~-------   73 (379)
                      .|...+.+++|+|||+++ +++..++.|++||+.++  +.+..+....      ..+..++|+|||+++++++       
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~  114 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN  114 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC--eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCccee
Confidence            345678899999999987 45567899999999987  4554443322      2356899999999887764       


Q ss_pred             -----CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEE
Q 016982           74 -----HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVT  148 (379)
Q Consensus        74 -----~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~  148 (379)
                           .+..+.+|+..+++....+........+..+.+++++..++.+   ..+.+|+..+..   ....+ . ......
T Consensus       115 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~-~-~~~~~~  186 (346)
T d1jmxb_         115 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGK---YTVAL-P-LRNWNR  186 (346)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCC---EEEEE-C-STTCCC
T ss_pred             eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCC---EEEEE-e-cCCCcc
Confidence                 4677899998887655444434445567777788887766543   457888887765   33333 2 223334


Q ss_pred             EEEEcCCCcEEEE-eeCCCeEEEEeccccccccccccC-------CCccCCcccce-EEEeecCCcceEEEEECCCCCEE
Q 016982          149 SVAWHPNNVFLAT-TSTDGKCRVFSTFIKGVDIKEKKE-------GTSSDTKFGEQ-ILQLDLSFSWAFGVKWSPSGNTL  219 (379)
Q Consensus       149 ~~~~~p~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l  219 (379)
                      .+.++|++..+.. ...++.+.+++.............       ....+...+.. ...+..+...+..+.+++++.++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (346)
T d1jmxb_         187 KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ  266 (346)
T ss_dssp             TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE
T ss_pred             ceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEE
Confidence            4455565543322 222333333322100000000000       00000123332 23345566778899999988888


Q ss_pred             EEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EEeCCCeEEEEecCCC
Q 016982          220 AYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VGFDCNPMVFAADETG  279 (379)
Q Consensus       220 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~d~~~~i~~~~~~~  279 (379)
                      +... ++.|.+||..+++. +..+. +...+.+++|+|||++|+ ++.|+.+.+|+.....
T Consensus       267 ~~~~-~~~v~v~d~~~~~~-~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         267 IYGV-LNRLAKYDLKQRKL-IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             EEEE-ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             EEec-CCeEEEEECCCCcE-EEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            7765 46899999988763 34444 456789999999998877 6778999999987654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.72  E-value=2.4e-15  Score=131.74  Aligned_cols=118  Identities=19%  Similarity=0.197  Sum_probs=88.5

Q ss_pred             ceeccCcceeEEEeCCCCcEEEEEec---------CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC
Q 016982            5 AVHQFAQCITCHAWSPDHAMVAFCPN---------NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD   75 (379)
Q Consensus         5 ~~~~~~~~i~~~~~s~~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   75 (379)
                      .+..|...|.++.|||||++|+.++.         ++.+.+||+.++   ....+..+...+..+.|||||++||... +
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~---~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~  131 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---QLITEERIPNNTQWVTWSPVGHKLAYVW-N  131 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---EECCSSCCCTTEEEEEECSSTTCEEEEE-T
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC---cccccccCCccccccccccCcceeeEee-c
Confidence            45566788999999999999998753         567899999987   4566788889999999999999999864 6


Q ss_pred             CeEEEEeccCCceeeeEEee----------------cCCCceeEEEECCCCCEEEEEeCCCe-EEEEE
Q 016982           76 RNSYVWNQEGSEWVPTLVIL----------------RLNRAALCVQWSPKENKFAVGSGAKT-VCICY  126 (379)
Q Consensus        76 ~~i~vw~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~d~~-v~i~~  126 (379)
                      +.+.+|+..+++........                ...+....+.|+|||+.|+....|.. +..+.
T Consensus       132 ~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         132 NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence            78999999888643322100                01223456889999999999876433 44443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=8.2e-16  Score=129.47  Aligned_cols=223  Identities=10%  Similarity=0.027  Sum_probs=146.7

Q ss_pred             ceeEEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccCC-------CceEEEEEcCCCCEEEEEe-
Q 016982           12 CITCHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKHD-------QIVSGIDWSVRSNRIVTVS-   73 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-   73 (379)
                      .+..++|||||++|++.+          .++.|++||+.++  +.+..+..+.       .....++|+|++++++.++ 
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~  125 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF  125 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC--CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC
Confidence            334789999999887643          4789999999987  4444443222       2235689999999887765 


Q ss_pred             -CCCeEEEEeccCCceeeeEEeec-------------------------------------------CCCceeEEEECCC
Q 016982           74 -HDRNSYVWNQEGSEWVPTLVILR-------------------------------------------LNRAALCVQWSPK  109 (379)
Q Consensus        74 -~d~~i~vw~~~~~~~~~~~~~~~-------------------------------------------~~~~v~~~~~~~~  109 (379)
                       .+..+.+|+..+++....+....                                           +...+....+.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (355)
T d2bbkh_         126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK  205 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred             CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCC
Confidence             45678999998876544332100                                           0011223445555


Q ss_pred             CCEEEEEeCCCeEEEEEeecCCceeEEEEEeecC----------CcCEEEEEEcCCCcEEEEeeCC----------CeEE
Q 016982          110 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRH----------DSSVTSVAWHPNNVFLATTSTD----------GKCR  169 (379)
Q Consensus       110 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~p~~~~l~~~~~d----------~~i~  169 (379)
                      +..++.++.++.+++|++..+.... .... ..+          ......++++|++..++....+          ..|.
T Consensus       206 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~-~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~  283 (355)
T d2bbkh_         206 AGRLVWPTYTGKIHQIDLSSGDAKF-LPAV-EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVV  283 (355)
T ss_dssp             TTEEEEEBTTSEEEEEECTTSSCEE-CCCE-ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEE
T ss_pred             CCeEEEecCCCeEEEEecCCCcEEE-Eecc-CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEE
Confidence            6667777888999999988765211 1111 111          1123457889998877765433          3689


Q ss_pred             EEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCC--EEEEEcCCCeEEEEECCCCCceeeeeeeec
Q 016982          170 VFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGN--TLAYVGHNSMIYFVDDVGPSPLAQNVAFRD  247 (379)
Q Consensus       170 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  247 (379)
                      +||.                  .+++.+..+.. ...+.+++|+|||+  ++++++.|+.|++||+.+++ .+..+..++
T Consensus       284 v~d~------------------~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~-~~~~i~~~G  343 (355)
T d2bbkh_         284 VLDA------------------KTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE-ELRSVNQLG  343 (355)
T ss_dssp             EEET------------------TTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC-EEEEECCCC
T ss_pred             EEeC------------------CCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC-EEEEEeCcC
Confidence            9996                  56677766654 34578999999997  35567789999999999987 457777665


Q ss_pred             CCeeeEEEecC
Q 016982          248 LPLRDVLFVSE  258 (379)
Q Consensus       248 ~~i~~~~~s~~  258 (379)
                      .....+.+.++
T Consensus       344 ~~p~~i~~~d~  354 (355)
T d2bbkh_         344 HGPQVITTADM  354 (355)
T ss_dssp             SSCCEEECCCC
T ss_pred             CCccEEEeCCC
Confidence            55555555444

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.3e-15  Score=128.99  Aligned_cols=296  Identities=8%  Similarity=-0.119  Sum_probs=172.5

Q ss_pred             cCcceeEEEeCCCCcEE--EE-EecCC--eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe----------
Q 016982            9 FAQCITCHAWSPDHAMV--AF-CPNNN--EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS----------   73 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l--~~-~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------   73 (379)
                      +.++...++..++++..  +. ...++  .|.++|..++  +.+..+..+..+  .++|+|||+.|++.+          
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~--~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~   93 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCG--VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTT--EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCC--cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccc
Confidence            45566667778888753  22 23344  4666677776  677777666544  589999999888764          


Q ss_pred             CCCeEEEEeccCCceeeeEEeecC-----CCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCE
Q 016982           74 HDRNSYVWNQEGSEWVPTLVILRL-----NRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSV  147 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v  147 (379)
                      .|+.|.+||..+++....+.....     ......++|+|||++++++. .++.+.+||+.+.+   ....+ ..+....
T Consensus        94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~---~~~~~-~~~~~~~  169 (368)
T d1mdah_          94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS---DDQLT-KSASCFH  169 (368)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE---EEEEE-ECSSCCC
T ss_pred             cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc---EeEEe-eccCcce
Confidence            367799999999987666543221     12345789999999998876 47899999999887   34444 2332221


Q ss_pred             EEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCe
Q 016982          148 TSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSM  227 (379)
Q Consensus       148 ~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~  227 (379)
                      .   +......++..+.||.+.++++.........            .....+..+...+....+.+++..+.+  ..+.
T Consensus       170 ~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~  232 (368)
T d1mdah_         170 I---HPGAAATHYLGSCPASLAASDLAAAPAAAGI------------VGAQCTGAQNCSSQAAQANYPGMLVWA--VASS  232 (368)
T ss_dssp             C---EEEETTEEECCCCTTSCEEEECCSSCCCCEE------------CCCCSCTTSCBCSCCEEETTTTEEEEC--BSSC
T ss_pred             E---ccCCCceEEEEcCCCCEEEEEecCCceeeee------------eecccccccccceeecccccCcEEEEe--cCCC
Confidence            1   1112355666677888777775211110000            000011222334456677788766554  3455


Q ss_pred             EEEEECCCCCceeee-eee----------ecCCeeeEEEecCCcEEEEE-eCC---------CeEEEEecCCCcEEEEEE
Q 016982          228 IYFVDDVGPSPLAQN-VAF----------RDLPLRDVLFVSEKMVIGVG-FDC---------NPMVFAADETGIWTFIKF  286 (379)
Q Consensus       228 i~v~d~~~~~~~~~~-~~~----------~~~~i~~~~~s~~~~~l~~~-~d~---------~~~i~~~~~~~~~~~~~~  286 (379)
                      +++++.......... ...          .......+++++++..+... .++         .+.+|+.....   ... 
T Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---~~~-  308 (368)
T d1mdah_         233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---TSG-  308 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---EEE-
T ss_pred             EEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc---EeE-
Confidence            667766554322111 010          11223456777776655422 111         12233322211   000 


Q ss_pred             ecccccCCCCCccCCCcccccceeeccccccCcccccccccccccccccceeeeeeecccCCcccceEEEeecCceEEEE
Q 016982          287 LDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGTHVNCINCIVPLREAGSSRITRFTTSGLDGKIVTW  366 (379)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~l~t~~~Dg~v~iW  366 (379)
                                                                . ..+...+.+++ +++|+.  ..++++++.|+.|++|
T Consensus       309 ------------------------------------------~-~~~~~~~~~~a-~spDG~--~~ly~s~~~~~~v~v~  342 (368)
T d1mdah_         309 ------------------------------------------P-ISNGHDSDAII-AAQDGA--SDNYANSAGTEVLDIY  342 (368)
T ss_dssp             ------------------------------------------C-CEEEEEECEEE-ECCSSS--CEEEEEETTTTEEEEE
T ss_pred             ------------------------------------------E-ecCCCceeEEE-ECCCCC--EEEEEEeCCCCeEEEE
Confidence                                                      0 12345688888 887761  1256788889999999


Q ss_pred             eCCCccccccCCC
Q 016982          367 DLESQEDLLNYHL  379 (379)
Q Consensus       367 ~~~~~~~~~~~~~  379 (379)
                      |..+++.++.+.+
T Consensus       343 D~~tgk~~~~i~~  355 (368)
T d1mdah_         343 DAASDQDQSSVEL  355 (368)
T ss_dssp             ESSSCEEEEECCC
T ss_pred             ECCCCCEEEEEEC
Confidence            9999999887753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=2.7e-14  Score=120.96  Aligned_cols=250  Identities=7%  Similarity=-0.080  Sum_probs=154.6

Q ss_pred             eEEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccCCCce-------EEEEEcCCCCEEEEEe--C
Q 016982           14 TCHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKHDQIV-------SGIDWSVRSNRIVTVS--H   74 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~--~   74 (379)
                      ..++|+|||++|++++          .++.|.+||..++  +.+..+..+....       ..+.|+++++.++...  .
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC--cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            3689999999998875          3578999999987  5555555544332       4578888887765543  4


Q ss_pred             CCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEE-EEEeCCCeEEEEEeecCCceeEEEEEe--ecCCcCEEEEE
Q 016982           75 DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKF-AVGSGAKTVCICYYEQENNWWVSKLIR--KRHDSSVTSVA  151 (379)
Q Consensus        75 d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~--~~~~~~v~~~~  151 (379)
                      ++.+.+|+....+...      +.....++.++|+++.+ ++.+.|+.+.+|+..............  .........+.
T Consensus       147 ~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQ------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQ  220 (373)
T ss_pred             CCceEEeeccCCeEEE------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEE
Confidence            5678889888765322      23446788999998755 567789999999988776321111110  11122234455


Q ss_pred             EcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEE----------EE
Q 016982          152 WHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTL----------AY  221 (379)
Q Consensus       152 ~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l----------~~  221 (379)
                      +.+++. ++..+.++.+.+|+.............     ...... ............++++|++..+          +.
T Consensus       221 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  293 (373)
T d2madh_         221 ANKSGR-IVWPVYSGKILQADISAAGATNKAPID-----ALSGGR-KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL  293 (373)
T ss_pred             ECCCce-EEEecCCceEEEEEcCCCeEEEEEeec-----cccCcE-EeeeeccCcceeeEEecCCCeEEEecCCCceEEe
Confidence            665554 455667888999986321110000000     000000 0001111223445566655544          44


Q ss_pred             EcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcE--EE-EEeCCCeEEEEecCCCc
Q 016982          222 VGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMV--IG-VGFDCNPMVFAADETGI  280 (379)
Q Consensus       222 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~-~~~d~~~~i~~~~~~~~  280 (379)
                      ...++.+.+||..+++.. ..+. +...+..++|+|||+.  ++ .+.|+.+++|+....+.
T Consensus       294 ~~~~~~v~~~d~~t~~~~-~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         294 HAAAKEVTSVTGLVGQTS-SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             ecCCCeEEEEECCCCcEE-EEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            556778999999887743 4444 5677899999999983  33 56788999999887653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.66  E-value=9.9e-15  Score=122.98  Aligned_cols=286  Identities=10%  Similarity=-0.012  Sum_probs=170.3

Q ss_pred             EEEEecCCeEEEEEecCCceEEEEEecc------------------------------CCCceEEEEEcCCCCEEEEEe-
Q 016982           25 VAFCPNNNEVHIYKLIQEKWEKLHVLQK------------------------------HDQIVSGIDWSVRSNRIVTVS-   73 (379)
Q Consensus        25 l~~~~~dg~i~i~~~~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~-   73 (379)
                      +++++.+|.|.+|++.+.  +.+..+.-                              |.........+|||++|++.. 
T Consensus        14 f~Sgg~sG~V~V~dlpS~--r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSM--RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTT--EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET
T ss_pred             EEeCCCCCcEEEEeCCCC--cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC
Confidence            567788999999999876  45554321                              222344555679999886654 


Q ss_pred             CCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCE--EEEEeCCCe-----------------EEEEEeecCCcee
Q 016982           74 HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENK--FAVGSGAKT-----------------VCICYYEQENNWW  134 (379)
Q Consensus        74 ~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~-----------------v~i~~~~~~~~~~  134 (379)
                      .+..|.++|+.+.+....+. .+....+..++|+|+|+.  ++..+.+..                 +..+|..+..   
T Consensus        92 ~~~rVavIDl~t~k~~~ii~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~---  167 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITH-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD---  167 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEE-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS---
T ss_pred             CCCEEEEEECCCCcEeeEEe-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce---
Confidence            67889999999998766654 345678899999999984  444333221                 2234444443   


Q ss_pred             EEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC---------------eEEEEeccccc--------cccccccCCCccCC
Q 016982          135 VSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG---------------KCRVFSTFIKG--------VDIKEKKEGTSSDT  191 (379)
Q Consensus       135 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---------------~i~v~d~~~~~--------~~~~~~~~~~~~~~  191 (379)
                      ....+  ........+.|+|+|+++++.+.+.               .+.+.+.....        ..............
T Consensus       168 v~~qI--~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~  245 (441)
T d1qnia2         168 VAWQV--IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR  245 (441)
T ss_dssp             EEEEE--EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred             eeEEE--ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc
Confidence            23333  1224567899999999988877543               12233211000        00000000000011


Q ss_pred             cccceEEEeecCCcceEEEEECCCCCEEEE-EcCCCeEEEEECCCCCce-------eeeeeee---cCCeeeEEEecCCc
Q 016982          192 KFGEQILQLDLSFSWAFGVKWSPSGNTLAY-VGHNSMIYFVDDVGPSPL-------AQNVAFR---DLPLRDVLFVSEKM  260 (379)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~d~~i~v~d~~~~~~~-------~~~~~~~---~~~i~~~~~s~~~~  260 (379)
                      ...+.+..+..... ...+.++|||+++++ +..+++|.+||+.+..+.       ...+.++   .-.....+|+++|.
T Consensus       246 ~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~  324 (441)
T d1qnia2         246 GESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN  324 (441)
T ss_dssp             SSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred             cCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce
Confidence            22334455554333 578999999998765 568899999997652211       0111111   12234568999988


Q ss_pred             EEE-EEeCCCeEEEEecC-------CCcEEEEEEecccccCCCCCccCCCcccccceeeccccccCcccccccccccccc
Q 016982          261 VIG-VGFDCNPMVFAADE-------TGIWTFIKFLDERKTSSSGPKYGSQFSEAFGKLYGQSKYGVGNDAVESSRTRGGT  332 (379)
Q Consensus       261 ~l~-~~~d~~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (379)
                      .++ ...|..+..|+...       ...+.+...++..                                      ...|
T Consensus       325 ~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~--------------------------------------y~~G  366 (441)
T d1qnia2         325 AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ--------------------------------------YQPG  366 (441)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS--------------------------------------SCEE
T ss_pred             EEEcccccceEEEeccchhhhhhccCCCceeEeccccc--------------------------------------cCCC
Confidence            776 44678888888641       1122232222110                                      1258


Q ss_pred             cccceeeeeeecccCCcccceEEEe---ecCce
Q 016982          333 HVNCINCIVPLREAGSSRITRFTTS---GLDGK  362 (379)
Q Consensus       333 h~~~v~~~~~~~~~~~~~~~~l~t~---~~Dg~  362 (379)
                      |...+.+.. ++|||    ++|+++   |.|..
T Consensus       367 H~~~~~~~t-~~pdG----k~l~s~~k~s~dr~  394 (441)
T d1qnia2         367 HNHASLTES-RDADG----KWLVVLSKFSKDRF  394 (441)
T ss_dssp             EEEETTTTS-TTCCC----CEEEEEESCCGGGS
T ss_pred             CCccccccc-cCCCC----cEEEecCccccccC
Confidence            988888888 77766    999999   67753

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=2.7e-13  Score=114.49  Aligned_cols=247  Identities=7%  Similarity=-0.063  Sum_probs=143.9

Q ss_pred             EEEeCCCCcEEEEEe----------cCCeEEEEEecCCceEEEEEeccCCC-------ceEEEEEcCCCCEEEEEe-CCC
Q 016982           15 CHAWSPDHAMVAFCP----------NNNEVHIYKLIQEKWEKLHVLQKHDQ-------IVSGIDWSVRSNRIVTVS-HDR   76 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~   76 (379)
                      .++|+|||+.|++.+          .|+.|.+||..+.  +.+..+..+..       ....++|+|||++|+++. .++
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~--~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC--cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            589999999988754          3678999999987  45554443221       234689999999988776 578


Q ss_pred             eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEE---EEEeecCCcCEEEEEEc
Q 016982           77 NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVS---KLIRKRHDSSVTSVAWH  153 (379)
Q Consensus        77 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~  153 (379)
                      .+.+||+.+++....+..  +.....   +......++..+.||.+.++++.........   ... ..+...+....+.
T Consensus       147 ~v~~~d~~~~~~~~~~~~--~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  220 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKS--ASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAAQAN  220 (368)
T ss_dssp             CEEEEEETTTEEEEEEEC--SSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCEEET
T ss_pred             eEEEEECCCCcEeEEeec--cCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccc-cccccceeecccc
Confidence            999999999987666533  111110   1112334555566677666666544321111   011 2334455567778


Q ss_pred             CCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC---------
Q 016982          154 PNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH---------  224 (379)
Q Consensus       154 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------  224 (379)
                      +++..+.+.  .+.+.+++...............    ........+  .......++++|++..++....         
T Consensus       221 ~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~  292 (368)
T d1mdah_         221 YPGMLVWAV--ASSILQGDIPAAGATMKAAIDGN----ESGRKADNF--RSAGFQMVAKLKNTDGIMILTVEHSRSCLAA  292 (368)
T ss_dssp             TTTEEEECB--SSCCEEEECCSSCCEEECCCCSS----CTHHHHTTE--EECSSSCEEEETTTTEEEEEEEECSSCTTSC
T ss_pred             cCcEEEEec--CCCEEEEeecCCceEEEeecccc----cceeeeeee--cCCCceeEEEcCCCCEEEEEecCCCceeecC
Confidence            887666544  44566665421111100000000    000000000  0112345788998887765432         


Q ss_pred             CCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCc-EE-E-EEeCCCeEEEEecCCC
Q 016982          225 NSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKM-VI-G-VGFDCNPMVFAADETG  279 (379)
Q Consensus       225 d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l-~-~~~d~~~~i~~~~~~~  279 (379)
                      ...|.+||..+++. +..+. ....+.+++|+|||+ ++ + ...++.+.+|+....+
T Consensus       293 ~~~v~v~D~~t~~~-~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         293 AENTSSVTASVGQT-SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             EEEEEEEESSSCCE-EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CceEEEEECCCCcE-eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            24699999988864 35554 345788999999997 33 3 3457789999876653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.52  E-value=2.7e-10  Score=95.34  Aligned_cols=238  Identities=8%  Similarity=-0.009  Sum_probs=137.0

Q ss_pred             EEEEEec--CCeEEEEEecCC--ceEEEEEe-ccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCC
Q 016982           24 MVAFCPN--NNEVHIYKLIQE--KWEKLHVL-QKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLN   98 (379)
Q Consensus        24 ~l~~~~~--dg~i~i~~~~~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~   98 (379)
                      .|++|+.  .+.|+.+..+..  ++..+... ......+..|+|+|++++|+++.. +.+..|.+....-..........
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            3566654  557877666544  33333332 223445678999999999988765 56888877654322222222334


Q ss_pred             CceeEEEECCCCCEEEEEe---CCCeEEEEEeecCCce-------------eEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           99 RAALCVQWSPKENKFAVGS---GAKTVCICYYEQENNW-------------WVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~---~d~~v~i~~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      .....+.++++++.+++..   ..+.+..+.+......             .............+.++.|+|+|++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            5567888999988543322   2355554443221100             00111112233457899999999988877


Q ss_pred             eC-CCeEEEEeccccccccccccCCCccCCcccce--EEEe--ecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCC
Q 016982          163 ST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQ--ILQL--DLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGP  236 (379)
Q Consensus       163 ~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~  236 (379)
                      .. ...|.+|+..                 ..+..  ....  .........++|+|+++++.+. ..+++|.+|++...
T Consensus       163 d~g~d~v~~~~~~-----------------~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         163 DLTANKLWTHRKL-----------------ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             ETTTTEEEEEEEC-----------------TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             eCCCCEEEEEEcc-----------------CCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            64 4578888752                 12221  1111  1224567899999999987654 46789999998765


Q ss_pred             Ccee-eeeee-----------------ecCCeeeEEEecCCcEEEEEe--CCC-----eEEEEecCCC
Q 016982          237 SPLA-QNVAF-----------------RDLPLRDVLFVSEKMVIGVGF--DCN-----PMVFAADETG  279 (379)
Q Consensus       237 ~~~~-~~~~~-----------------~~~~i~~~~~s~~~~~l~~~~--d~~-----~~i~~~~~~~  279 (379)
                      .... .....                 .......+.++|||++|.++.  +..     +..|..+..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g  293 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG  293 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCC
Confidence            4221 11110                 011245789999999887542  222     5566665554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=2.7e-12  Score=108.04  Aligned_cols=241  Identities=7%  Similarity=-0.057  Sum_probs=151.9

Q ss_pred             cCcceeEEEeCCCCcEEEEE-ecCCeEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCC--EEEEEeCCC--------
Q 016982            9 FAQCITCHAWSPDHAMVAFC-PNNNEVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSN--RIVTVSHDR--------   76 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~l~~~~~d~--------   76 (379)
                      |...+....++|||++|++. ..+++|.++|+.+.  +....+. .+...+..++|+|+++  +++..+.+.        
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~--k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIM--KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTT--EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCC--cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            34456667788999998665 45789999999987  4444333 2456789999999997  444444332        


Q ss_pred             ---------eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC---------------------------
Q 016982           77 ---------NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK---------------------------  120 (379)
Q Consensus        77 ---------~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------------------  120 (379)
                               .+..+|..+.+....+..   .+....+.++|+|+++++.+.+.                           
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                     234577777665444432   35678899999999988876432                           


Q ss_pred             --------------eEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeCCCeEEEEeccccccccccccC
Q 016982          121 --------------TVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTSTDGKCRVFSTFIKGVDIKEKKE  185 (379)
Q Consensus       121 --------------~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~  185 (379)
                                    .+.+++.....   +...+ ... .....+.++|||++++ ++..++++.+||+......+. .. 
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~---v~~~I-Pvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~-~~-  297 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESE---FTRYI-PVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFE-DK-  297 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCS---SEEEE-CCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTT-TS-
T ss_pred             EecCCCEEEeCCCCcEEEEcccCCc---eEEEE-eCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhh-cc-
Confidence                          12222111111   23333 222 2346799999999775 566799999999742110000 00 


Q ss_pred             CCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC---------CCceeeee-----eeecCCee
Q 016982          186 GTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG---------PSPLAQNV-----AFRDLPLR  251 (379)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~-----~~~~~~i~  251 (379)
                           .....++.......-....-+|+++|..+.+...|..|..|++..         ....+..+     .+|...+.
T Consensus       298 -----~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~  372 (441)
T d1qnia2         298 -----IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASL  372 (441)
T ss_dssp             -----SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETT
T ss_pred             -----CCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccc
Confidence                 011112221111122345668999999888889999999999631         12233333     47778888


Q ss_pred             eEEEecCCcEEEEEe
Q 016982          252 DVLFVSEKMVIGVGF  266 (379)
Q Consensus       252 ~~~~s~~~~~l~~~~  266 (379)
                      +.+++|||++|+++.
T Consensus       373 ~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         373 TESRDADGKWLVVLS  387 (441)
T ss_dssp             TTSTTCCCCEEEEEE
T ss_pred             ccccCCCCcEEEecC
Confidence            999999999999764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=3.1e-13  Score=118.10  Aligned_cols=152  Identities=13%  Similarity=0.210  Sum_probs=109.5

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEE---EeccCCCceEEEEEcCCCCEEEEEeC---------CCeEEE
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLH---VLQKHDQIVSGIDWSVRSNRIVTVSH---------DRNSYV   80 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v   80 (379)
                      -..+.|.++++++..  .++.+.+||+.+++...+.   .+..|...|.++.|||||++|+.++.         ++.+.+
T Consensus        19 ~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          19 LYSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            345789999987764  4788999999998432221   33445678999999999999998753         467899


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeec-----------------C
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKR-----------------H  143 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-----------------~  143 (379)
                      ||+.+++...   +..+...+..+.|+|||+.+|... ++.+++|+...+..   .+.....                 .
T Consensus        97 ~d~~~~~~~~---l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~---~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          97 YDLNKRQLIT---EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS---YRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EETTTTEECC---SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC---EECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EECCCCcccc---cccCCccccccccccCcceeeEee-cccceEEECCCCce---eeeeeccCCCcccccccceeeeeee
Confidence            9999987433   356778899999999999999965 67899998877653   2211011                 1


Q ss_pred             CcCEEEEEEcCCCcEEEEeeCCCe-EEEEec
Q 016982          144 DSSVTSVAWHPNNVFLATTSTDGK-CRVFST  173 (379)
Q Consensus       144 ~~~v~~~~~~p~~~~l~~~~~d~~-i~v~d~  173 (379)
                      .+....+.|+|||++|+....|.. +..|.+
T Consensus       170 ~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             cCCccccEECCCCCccceeEecCCcCceEEE
Confidence            233456889999999998875433 555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.9e-11  Score=98.12  Aligned_cols=225  Identities=14%  Similarity=0.154  Sum_probs=138.8

Q ss_pred             cceeccCcceeEEEeCCCCcEEEEEecC---CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-CCeEE
Q 016982            4 IAVHQFAQCITCHAWSPDHAMVAFCPNN---NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-DRNSY   79 (379)
Q Consensus         4 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~   79 (379)
                      ..+..+...+...+|||||+.||.....   ..+.+.+..++   ....+..+........|+|+|+.++.... ++...
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~  108 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN  108 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC---ceeEEeeeecccccceecCCCCeeeEeeecCCccc
Confidence            3455667788899999999999987543   24666666665   23344456677889999999998877653 33322


Q ss_pred             E--EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEe-CCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC
Q 016982           80 V--WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGS-GAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN  156 (379)
Q Consensus        80 v--w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  156 (379)
                      +  +......   ...............+++++..++..+ .++...+|.......  ....+ ...........|+|++
T Consensus       109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~--~~~~~-~~~~~~~~~~~~spdg  182 (269)
T d2hqsa1         109 LYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG--APQRI-TWEGSQNQDADVSSDG  182 (269)
T ss_dssp             EEEEETTTCC---EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CCEEC-CCSSSEEEEEEECTTS
T ss_pred             eeeccccccc---ceeeeeccccccccccccccccceecccccCCceEeeeecccc--cceee-eccccccccccccccc
Confidence            3  3322222   122223344455667777776555544 455555554443332  12233 4556677788999999


Q ss_pred             cEEEEeeCC-CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC---CCeEEEEE
Q 016982          157 VFLATTSTD-GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH---NSMIYFVD  232 (379)
Q Consensus       157 ~~l~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~v~d  232 (379)
                      +.++..+.+ +...+|...                 ...... .............|||||++|+..+.   ...|++++
T Consensus       183 ~~~~~~~~~~~~~~i~~~~-----------------~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~  244 (269)
T d2hqsa1         183 KFMVMVSSNGGQQHIAKQD-----------------LATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  244 (269)
T ss_dssp             SEEEEEEECSSCEEEEEEE-----------------TTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             ceeEEEeecCCceeeeEee-----------------cccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            888876654 444444431                 111222 22233455678899999999886553   35789999


Q ss_pred             CCCCCceeeeeeeecCCeeeEEEec
Q 016982          233 DVGPSPLAQNVAFRDLPLRDVLFVS  257 (379)
Q Consensus       233 ~~~~~~~~~~~~~~~~~i~~~~~s~  257 (379)
                      +.....  ..+......+...+|||
T Consensus       245 ~dg~~~--~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         245 TDGRFK--ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             TTSCCE--EECCCSSSEEEEEEECC
T ss_pred             CCCCCE--EEEeCCCCcEEeEEeCC
Confidence            887652  44555566788899998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.47  E-value=4.4e-11  Score=97.59  Aligned_cols=234  Identities=11%  Similarity=-0.008  Sum_probs=150.5

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce-e
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW-V   89 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~   89 (379)
                      ..+..++++|||+++++...+++|+.++.... ..   .+......+.+++|+|+|+++++...++.+..++...... .
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~---~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ---IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EE---EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EE---EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            35788999999999999888999988886543 22   2334556789999999999988888888888887765431 1


Q ss_pred             eeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEee---------cCCcCEEEEEEcCCCcEEE
Q 016982           90 PTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRK---------RHDSSVTSVAWHPNNVFLA  160 (379)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~p~~~~l~  160 (379)
                      ..+...........+.+.++++++++.+.++.+..++......   ......         ........+.+.. +.+++
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~  179 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGLKRFG-NFLYV  179 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEE
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc---eeEecCCccceeeccCcccccccccccC-Cceee
Confidence            1222223456688999999999888888888887776655431   111101         1122456666653 34555


Q ss_pred             EeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee
Q 016982          161 TTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA  240 (379)
Q Consensus       161 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~  240 (379)
                      +.+..+.|..+++....              ... ....+. .......++++++|+++++...++.|..++.......+
T Consensus       180 ~~~~~~~i~~~~~~~~~--------------~~~-~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~  243 (302)
T d2p4oa1         180 SNTEKMLLLRIPVDSTD--------------KPG-EPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTII  243 (302)
T ss_dssp             EETTTTEEEEEEBCTTS--------------CBC-CCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEE
T ss_pred             ecCCCCeEEeccccccc--------------ccc-cccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEE
Confidence            66678888888752100              000 011111 12335679999999988877788999999866533222


Q ss_pred             eeeeeecCCeeeEEE---ecCCcEEEEEeCC
Q 016982          241 QNVAFRDLPLRDVLF---VSEKMVIGVGFDC  268 (379)
Q Consensus       241 ~~~~~~~~~i~~~~~---s~~~~~l~~~~d~  268 (379)
                      ..........++++|   ++|++.|..+..+
T Consensus       244 ~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         244 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            233323345789999   5677766644433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.47  E-value=4e-10  Score=94.30  Aligned_cols=268  Identities=7%  Similarity=-0.086  Sum_probs=149.3

Q ss_pred             CcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEE--EEEe-CCCeEEEEeccCC
Q 016982           10 AQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRI--VTVS-HDRNSYVWNQEGS   86 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~-~d~~i~vw~~~~~   86 (379)
                      ..++.-|+|+|++++|.++.. +.+..|.+....................++++++++.+  +++. ..+.+..+.+...
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            445677999999999887754 67888887754211111111122334577888988744  3322 2345555443211


Q ss_pred             -------------ceeeeEE--eecCCCceeEEEECCCCCEEEEEeC-CCeEEEEEeecCCceeEEEEEe-ecCCcCEEE
Q 016982           87 -------------EWVPTLV--ILRLNRAALCVQWSPKENKFAVGSG-AKTVCICYYEQENNWWVSKLIR-KRHDSSVTS  149 (379)
Q Consensus        87 -------------~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~-~~~~~~v~~  149 (379)
                                   .......  .......+.++.|+|+|++++++.. ...|.+|+.............. .........
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~  197 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEE
Confidence                         1000000  0112234789999999998888764 4578888776544322222221 233467889


Q ss_pred             EEEcCCCcEEEEee-CCCeEEEEeccccccccccc--cCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC--
Q 016982          150 VAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEK--KEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH--  224 (379)
Q Consensus       150 ~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--  224 (379)
                      ++|+|+++++.+.. .++.|.+|++..........  ..+... ............+......+.++|+|++|+++..  
T Consensus       198 i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccc-ccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            99999998876555 58899999873211000000  000000 0000000000011234567899999999987642  


Q ss_pred             ----CCeEEEEECCCCCceeeeee-----eecCCeeeEEEec-CCcEEEEE--eCCCeEEEEecCCC
Q 016982          225 ----NSMIYFVDDVGPSPLAQNVA-----FRDLPLRDVLFVS-EKMVIGVG--FDCNPMVFAADETG  279 (379)
Q Consensus       225 ----d~~i~v~d~~~~~~~~~~~~-----~~~~~i~~~~~s~-~~~~l~~~--~d~~~~i~~~~~~~  279 (379)
                          .+.|..|++.....+.....     ..+.....++++| +|++|+++  .++.|.+|..+...
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence                23477787765443322111     1234567899998 78977643  56789999876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=6.1e-10  Score=89.05  Aligned_cols=202  Identities=14%  Similarity=0.130  Sum_probs=123.8

Q ss_pred             eEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC---eEEEEeccCCceeeeEEeecCCCceeEEEECCC
Q 016982           33 EVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR---NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPK  109 (379)
Q Consensus        33 ~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (379)
                      .|+|.|....+...+   ..+...+...+|||||+.||......   .+.+.+..++...   ....+........|+|+
T Consensus        20 ~l~i~d~dG~~~~~l---~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spd   93 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---QVASFPRHNGAPAFSPD   93 (269)
T ss_dssp             EEEEEETTSCSCEEE---EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---EEECCSSCEEEEEECTT
T ss_pred             EEEEEcCCCCCcEEE---ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---EEeeeecccccceecCC
Confidence            578888776533333   23456788999999999998775433   4666777666532   22456778889999999


Q ss_pred             CCEEEEEeC-CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeCCCeEEEEeccccccccccccCCC
Q 016982          110 ENKFAVGSG-AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTSTDGKCRVFSTFIKGVDIKEKKEGT  187 (379)
Q Consensus       110 ~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~  187 (379)
                      |+.++.... ++...++........  .... ...........+++++..+. +...++...+|...             
T Consensus        94 g~~i~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~-------------  157 (269)
T d2hqsa1          94 GSKLAFALSKTGSLNLYVMDLASGQ--IRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN-------------  157 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCC--EEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE-------------
T ss_pred             CCeeeEeeecCCccceeeccccccc--ceee-eeccccccccccccccccceecccccCCceEeeee-------------
Confidence            998887664 334444444333311  1222 33444555666777775544 44455554554431             


Q ss_pred             ccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCC-C--eEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE
Q 016982          188 SSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHN-S--MIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  263 (379)
                          ........+...........|+|+++.++..+.+ +  .+.+.+.....   ..............|||||+.|+
T Consensus       158 ----~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~p~~SPDG~~i~  229 (269)
T d2hqsa1         158 ----INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSSTFLDETPSLAPNGTMVI  229 (269)
T ss_dssp             ----TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCSSSCEEEEECTTSSEEE
T ss_pred             ----cccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc---ceEeecCccccceEECCCCCEEE
Confidence                1122233344445667888999999998876644 3  44455554443   22333455667889999999887

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=4.7e-10  Score=90.23  Aligned_cols=235  Identities=15%  Similarity=0.107  Sum_probs=157.6

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccC------CCceEEEEEcCCC-CEEEEE-eCCCeEEEEec
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH------DQIVSGIDWSVRS-NRIVTV-SHDRNSYVWNQ   83 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~-~~d~~i~vw~~   83 (379)
                      ....++++++|+++++-..++.|++||.+.   +.+..+...      ......+++.++. ..+++. +.++.|..++.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG---RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS---CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC---CEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            468999999999888877788999999764   344444221      1123455655554 344433 34567777776


Q ss_pred             cCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEE-eecCCcCEEEEEEcCCCcEEEEe
Q 016982           84 EGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLI-RKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      . ++....+. .........+++.+++..+++....+.+.+++.+..    ....+ ...+......+++.++++.+++.
T Consensus       101 ~-g~~~~~~~-~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~----~~~~~g~~~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         101 Y-GQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----VLHKFGCSKHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             T-SCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC----EEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             c-ccceeecC-CCcccccceeccccCCcEEEEeeccceeeEeccCCc----eeecccccccccccceeeeccceeEEeee
Confidence            4 33333321 223456788999999998888777777777654332    22322 13455678899999999998888


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEee--cCCcceEEEEECCCCCEEEEEcC-CCeEEEEECCCCCce
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD--LSFSWAFGVKWSPSGNTLAYVGH-NSMIYFVDDVGPSPL  239 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~-d~~i~v~d~~~~~~~  239 (379)
                      ...+.|++||.                   .++.+.++.  +.......++++|+|+++++-.. ++.|.+|+.. ++ .
T Consensus       175 ~~~~~V~~~d~-------------------~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~-~  233 (279)
T d1q7fa_         175 NRAHCVKVFNY-------------------EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQ-L  233 (279)
T ss_dssp             GGGTEEEEEET-------------------TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SC-E
T ss_pred             ccccceeeeec-------------------CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CC-E
Confidence            88999999984                   455565552  23445789999999997776543 4579999843 33 3


Q ss_pred             eeeeeee--cCCeeeEEEecCCcEEEEEeCCCeEEEEec
Q 016982          240 AQNVAFR--DLPLRDVLFVSEKMVIGVGFDCNPMVFAAD  276 (379)
Q Consensus       240 ~~~~~~~--~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~  276 (379)
                      +..+...  ......+++.++|.++++..+..|++|...
T Consensus       234 ~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             EEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEee
Confidence            3444322  235788999999998888888889888753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=2.4e-10  Score=90.98  Aligned_cols=227  Identities=8%  Similarity=-0.034  Sum_probs=143.0

Q ss_pred             CcceeEEEeCCCCcEEEEE-ecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCce
Q 016982           10 AQCITCHAWSPDHAMVAFC-PNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEW   88 (379)
Q Consensus        10 ~~~i~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   88 (379)
                      .-...+++++++|++.++. +..+.+..++..... .......+. .....++++++++.+++...++.+++++-.+...
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~-~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG-TTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----C-EEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-EEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            3456899999999976654 445677777665431 222222222 2457889999998777766666666665444432


Q ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeE
Q 016982           89 VPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKC  168 (379)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i  168 (379)
                      ...   ...-..+..+++.++++++++-..+..+..++......    .............++++|+++.+++...++.|
T Consensus        91 ~~~---~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i  163 (260)
T d1rwia_          91 VLP---FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV  163 (260)
T ss_dssp             ECC---CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSCCSCCEEEECTTCCEEEEEGGGTEE
T ss_pred             eee---eeeeeecccccccccceeEeecccccccccccccccee----eeeeecccCCcceeeecCCCCEeeeccccccc
Confidence            211   22235678999999998877766666666655444331    11111223445789999999988888888889


Q ss_pred             EEEeccccccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee-e
Q 016982          169 RVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-R  246 (379)
Q Consensus       169 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~  246 (379)
                      ..++..                   +.....+ .........++++++|+++++....+.|..++......  ..+.. .
T Consensus       164 ~~~d~~-------------------~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~--~~~~~~~  222 (260)
T d1rwia_         164 VKLEAE-------------------SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TVLPFTG  222 (260)
T ss_dssp             EEECTT-------------------TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC--EECCCCS
T ss_pred             cccccc-------------------cceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE--EEEccCC
Confidence            999852                   2222222 22334568899999999888888888898887655432  22221 1


Q ss_pred             cCCeeeEEEecCCcEEEEEe
Q 016982          247 DLPLRDVLFVSEKMVIGVGF  266 (379)
Q Consensus       247 ~~~i~~~~~s~~~~~l~~~~  266 (379)
                      -.....|+++++|.++++..
T Consensus       223 ~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         223 LNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEEG
T ss_pred             CCCeEEEEEeCCCCEEEEEC
Confidence            23467899999988777643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8.3e-10  Score=95.23  Aligned_cols=240  Identities=10%  Similarity=0.066  Sum_probs=136.6

Q ss_pred             EEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CCCceEEEEEcCCCCEEEEEe---------CCCeEEEEeccC
Q 016982           16 HAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HDQIVSGIDWSVRSNRIVTVS---------HDRNSYVWNQEG   85 (379)
Q Consensus        16 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---------~d~~i~vw~~~~   85 (379)
                      ..|.+++.++.. ..+|.|.+||+.+++...+..... ..-.+....||||+++++...         ..+.+.++|+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            468888876643 467899999999874333322221 223567888999999987764         346789999998


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCc-----------------CEE
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDS-----------------SVT  148 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~-----------------~v~  148 (379)
                      +..............+....|||||+.+|... ++.|.+.+...+..   .+....+...                 .-.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~---~~lt~~g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA---IRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC---EEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce---EEEecccCcceeeccccchhhhhhhccccc
Confidence            87544332222345566789999999999877 56777766655542   2222112111                 125


Q ss_pred             EEEEcCCCcEEEEeeC-CCeEEEEeccccc-------cccccccCCCcc--------CCcccceE-EEe-----ecCCcc
Q 016982          149 SVAWHPNNVFLATTST-DGKCRVFSTFIKG-------VDIKEKKEGTSS--------DTKFGEQI-LQL-----DLSFSW  206 (379)
Q Consensus       149 ~~~~~p~~~~l~~~~~-d~~i~v~d~~~~~-------~~~~~~~~~~~~--------~~~~~~~~-~~~-----~~~~~~  206 (379)
                      .+-|+|||++||.... +..+..+.+....       ...+.+.+....        +...+... ...     ......
T Consensus       177 a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y  256 (465)
T d1xfda1         177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY  256 (465)
T ss_dssp             EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred             eEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccce
Confidence            6789999999998753 3445555432100       001111110000        00000000 000     011223


Q ss_pred             eEEEEECCCCCEEEEEc-CC---CeEEEEECCCCCceeeeeee-ecCC----eeeEEEecCCcE
Q 016982          207 AFGVKWSPSGNTLAYVG-HN---SMIYFVDDVGPSPLAQNVAF-RDLP----LRDVLFVSEKMV  261 (379)
Q Consensus       207 v~~~~~sp~~~~l~~~~-~d---~~i~v~d~~~~~~~~~~~~~-~~~~----i~~~~~s~~~~~  261 (379)
                      +..+.|+|++++++... .+   ..+.++|..++... ..... ....    -....|++||+.
T Consensus       257 ~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~-~~~~e~~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-KKHEDESEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-EEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             eeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE-EEEEEcCCceEeccCCceeEccCCCe
Confidence            67899999998766542 22   36788898887532 22222 2222    235688999873

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.32  E-value=1.1e-08  Score=83.30  Aligned_cols=246  Identities=10%  Similarity=-0.006  Sum_probs=146.8

Q ss_pred             cceeEEEeCCCCcEEEEEec-------CCeEEEEEecCCceEEEEEecc--CCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 016982           11 QCITCHAWSPDHAMVAFCPN-------NNEVHIYKLIQEKWEKLHVLQK--HDQIVSGIDWSVRSNRIVTVSHDRNSYVW   81 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~-------dg~i~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~vw   81 (379)
                      .....++|.|+|+++++...       +|+|..||..++..........  ....-..++|.++++.|+++...+.+...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34577899999998776432       4678888888764333222111  11235689999999988888877778888


Q ss_pred             eccCCceeeeEEeecCC---CceeEEEECCCCCEEEEEeC-------------CCeEEEEEeecCCceeEEEEEeecCCc
Q 016982           82 NQEGSEWVPTLVILRLN---RAALCVQWSPKENKFAVGSG-------------AKTVCICYYEQENNWWVSKLIRKRHDS  145 (379)
Q Consensus        82 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~-------------d~~v~i~~~~~~~~~~~~~~~~~~~~~  145 (379)
                      +.++....... .....   .....+++.++|++.++-..             ...-.+|-+.....  .....  ....
T Consensus        98 ~~~g~~~~~~~-~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~--~~~~~--~~~~  172 (314)
T d1pjxa_          98 QTDGTFEEIAK-KDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ--MIQVD--TAFQ  172 (314)
T ss_dssp             ETTSCEEECCS-BCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC--EEEEE--EEES
T ss_pred             eCCCcEEEEEe-ccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc--eeEee--CCcc
Confidence            88765422111 11111   13578999999988776432             11123444443221  12222  2223


Q ss_pred             CEEEEEEcCCCc-----EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec-CCcceEEEEECCCCCEE
Q 016982          146 SVTSVAWHPNNV-----FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL-SFSWAFGVKWSPSGNTL  219 (379)
Q Consensus       146 ~v~~~~~~p~~~-----~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l  219 (379)
                      .-+.++|+|++.     ++++-+..+.|..|++.....            ....+....+.. .......+++.++|++.
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~------------~~~~~~~~~~~~~~~~~pdGiavD~~Gnly  240 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAK------------IENKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTE------------EEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccc------------cceeeEEEEccccccccceeeEEecCCcEE
Confidence            447889998764     445556788898888621000            001111222222 12345689999999988


Q ss_pred             EEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEE-EE-eCCCeEEEE
Q 016982          220 AYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIG-VG-FDCNPMVFA  274 (379)
Q Consensus       220 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~-~d~~~~i~~  274 (379)
                      ++....+.|.+||...+. ....+.......++++|.|+++.|. +. .++.|..+.
T Consensus       241 Va~~~~g~I~~~dp~~g~-~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         241 VANWGSSHIEVFGPDGGQ-PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EEEETTTEEEEECTTCBS-CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCEEEEEeCCCCE-EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            877788999999977654 3344554456788999999987443 33 334444433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.31  E-value=1.3e-08  Score=83.25  Aligned_cols=235  Identities=10%  Similarity=0.025  Sum_probs=140.8

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC----CCeEEEEeccCCc
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH----DRNSYVWNQEGSE   87 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~vw~~~~~~   87 (379)
                      .+..++|.++|++.++-...+.|+.|+.+++  .....+.........++++++|+++++...    .+.+...+.....
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~--~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCC--eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            3578999999997777777889998888776  333333344556789999999987776543    2345555655554


Q ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCC----CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEE-EEe
Q 016982           88 WVPTLVILRLNRAALCVQWSPKENKFAVGSGA----KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFL-ATT  162 (379)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~  162 (379)
                      ................+.+.++|++.++....    ..-.+|-+.....  ....+ ...-...+.++|+|+++.| ++-
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~~-~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPI-IQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEE-EEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc--eeEEE-eeccceeeeeeeccccceEEEec
Confidence            33322211223457789999999876654321    1122333332211  11222 1222345789999999765 555


Q ss_pred             eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeee
Q 016982          163 STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       163 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~  242 (379)
                      +..+.|..|++........          ..................++++++|++.++....+.|.+||. .++ .+..
T Consensus       196 ~~~~~I~~~d~~~~g~~~~----------~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~-~l~~  263 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQ----------PFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGY-PIGQ  263 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEE----------EEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSC-EEEE
T ss_pred             ccCCceEEEEEcCCCceec----------cccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCc-EEEE
Confidence            5678999998631100000          000111111111233578999999998888888999999995 444 3344


Q ss_pred             eee------ecCCeeeEEEecCCcEEE
Q 016982          243 VAF------RDLPLRDVLFVSEKMVIG  263 (379)
Q Consensus       243 ~~~------~~~~i~~~~~s~~~~~l~  263 (379)
                      +..      +...+++++|.+++..+.
T Consensus       264 i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         264 ILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             EeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence            432      223477899988766554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.31  E-value=3.8e-08  Score=79.81  Aligned_cols=215  Identities=10%  Similarity=0.070  Sum_probs=135.3

Q ss_pred             EEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEE
Q 016982           45 EKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCI  124 (379)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  124 (379)
                      +.+..+... ..+..++++|||+++++...+++|..|+.....  ..+  ......+.+++|+++|+++++...++.+..
T Consensus        19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~--~~~~~~~~gla~~~dG~l~v~~~~~~~~~~   93 (302)
T d2p4oa1          19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--ATVEGKVSGLAFTSNGDLVATGWNADSIPV   93 (302)
T ss_dssp             EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--EECSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEE--EcCCCCcceEEEcCCCCeEEEecCCceEEE
Confidence            445555432 357899999999999998889999888865442  222  345678999999999999998888888888


Q ss_pred             EEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          125 CYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                      ++....... ...............+++.++++++++.+.++.+..++............       ..... .......
T Consensus        94 ~~~~~~~~~-~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~  164 (302)
T d2p4oa1          94 VSLVKSDGT-VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH-------PMLAR-SNSESVF  164 (302)
T ss_dssp             EEEECTTSC-EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC-------GGGSC-SSTTCCS
T ss_pred             EEecccccc-eeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC-------Cccce-eeccCcc
Confidence            887665432 12222134456788999999999998888888888887521110000000       00000 0000112


Q ss_pred             cceEEEEECCCCCEEEEEcCCCeEEEEECCCCCcee-eeeeeecCCeeeEEEecCCcEEEEE-eCCCeEEEE
Q 016982          205 SWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLA-QNVAFRDLPLRDVLFVSEKMVIGVG-FDCNPMVFA  274 (379)
Q Consensus       205 ~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~  274 (379)
                      .....+.++. +.++++.+..+.|..++........ ............++|+++|.++++. .++.|..+.
T Consensus       165 ~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         165 PAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             CSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             cccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            2345666654 3345556778899999876653221 1111234456789999999977755 455665554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=3.1e-08  Score=79.30  Aligned_cols=194  Identities=9%  Similarity=0.032  Sum_probs=124.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecC----CCceeEEEECCCC-CEEEEE-eCCCeEEEEEeec
Q 016982           56 IVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRL----NRAALCVQWSPKE-NKFAVG-SGAKTVCICYYEQ  129 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~-~~l~~~-~~d~~v~i~~~~~  129 (379)
                      ....++++++++.+++-..++.|++||.+ ++++..+.....    ......+++.++. ..+++. +.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            35789999999887776777889999965 444443321111    1123455655543 334333 2345565554322


Q ss_pred             CCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEe--ecCCcce
Q 016982          130 ENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQL--DLSFSWA  207 (379)
Q Consensus       130 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v  207 (379)
                       .   ....+..........+++.++++++++....+.+.+++                   ..++.+..+  ..+....
T Consensus       103 -~---~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~-------------------~~g~~~~~~g~~~~~~~~  159 (279)
T d1q7fa_         103 -Q---FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFD-------------------QNGNVLHKFGCSKHLEFP  159 (279)
T ss_dssp             -C---EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEEC-------------------TTSCEEEEEECTTTCSSE
T ss_pred             -c---ceeecCCCcccccceeccccCCcEEEEeeccceeeEec-------------------cCCceeeccccccccccc
Confidence             2   23333234456678899999999888887788888887                   345555555  2334567


Q ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeee--eecCCeeeEEEecCCcEEEEEeC--CCeEEEEe
Q 016982          208 FGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVA--FRDLPLRDVLFVSEKMVIGVGFD--CNPMVFAA  275 (379)
Q Consensus       208 ~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~d--~~~~i~~~  275 (379)
                      ..+++.++++.+++....+.|++||....  .+..+.  +.......+++.++|+++++...  ..+.+|+.
T Consensus       160 ~~i~~d~~g~i~v~d~~~~~V~~~d~~G~--~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         160 NGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             EEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             ceeeeccceeEEeeeccccceeeeecCCc--eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            88999999998888888899999996543  234432  22334678999999998876533  24666553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.17  E-value=4.3e-08  Score=77.55  Aligned_cols=186  Identities=9%  Similarity=-0.026  Sum_probs=114.8

Q ss_pred             ceEEEEEcCCCCEEEEE-eCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCcee
Q 016982           56 IVSGIDWSVRSNRIVTV-SHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWW  134 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~  134 (379)
                      .-..++++++|+..++. +..+.+..++.....  ..............++++++++++++....+.+++++-....   
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~---   89 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ---   89 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----C--EEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC---
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce--EEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce---
Confidence            34799999999876654 455677777665443  111112222456789999999877776666556554322221   


Q ss_pred             EEEEEeecCCcCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEee-cCCcceEEEEEC
Q 016982          135 VSKLIRKRHDSSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD-LSFSWAFGVKWS  213 (379)
Q Consensus       135 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s  213 (379)
                        ............++++.++++++++-..+..+..++..                   +.....+. ........++++
T Consensus        90 --~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          90 --TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-------------------SKTQTVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             --EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTT-------------------CSSCEECCCCSCCSCCEEEEC
T ss_pred             --eeeeeeeeeecccccccccceeEeeccccccccccccc-------------------cceeeeeeecccCCcceeeec
Confidence              11212233567899999999988877667777777641                   11111111 112345789999


Q ss_pred             CCCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCC
Q 016982          214 PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDC  268 (379)
Q Consensus       214 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~  268 (379)
                      |+|+++++...++.|..+|....... ............+++.++|.++++....
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~  202 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNT  202 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred             CCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeeeeeeeeecCC
Confidence            99998888888889999997765432 2211233456789999999888766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.14  E-value=1.1e-07  Score=77.39  Aligned_cols=200  Identities=9%  Similarity=0.074  Sum_probs=129.0

Q ss_pred             eeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc-CC----CceEEEEEcCCCCEEEEEeC-------------
Q 016982           13 ITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK-HD----QIVSGIDWSVRSNRIVTVSH-------------   74 (379)
Q Consensus        13 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~----~~v~~~~~~~~~~~l~~~~~-------------   74 (379)
                      ...++|.++++.++++...+.|..++.++.   ....+.. ..    ...+.+++.++|++.++-..             
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~---~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGT---FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSC---EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCc---EEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence            567999999998888877778888887765   2222211 11    12577999999988776432             


Q ss_pred             --CCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC-----EEEEEeCCCeEEEEEeecCCceeEEEEEe---ecCC
Q 016982           75 --DRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN-----KFAVGSGAKTVCICYYEQENNWWVSKLIR---KRHD  144 (379)
Q Consensus        75 --d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~v~i~~~~~~~~~~~~~~~~---~~~~  144 (379)
                        .|.|..++.+ ++.....   ..-.....++|+|+++     ++++-+..+.|..|++.........+.+.   ....
T Consensus       150 ~~~G~v~~~~~d-g~~~~~~---~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  225 (314)
T d1pjxa_         150 EKFGSIYCFTTD-GQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             SSCEEEEEECTT-SCEEEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             cCCceEEEEeec-CceeEee---CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence              2344444443 2322221   1223446789988764     44444667889988887654321122221   1122


Q ss_pred             cCEEEEEEcCCCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCE-EEEEc
Q 016982          145 SSVTSVAWHPNNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNT-LAYVG  223 (379)
Q Consensus       145 ~~v~~~~~~p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~  223 (379)
                      .....+++.++|+++++....+.|.+||.                  ..++.+..+.......++++|.|+++. +++.+
T Consensus       226 ~~pdGiavD~~GnlyVa~~~~g~I~~~dp------------------~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         226 GGADGMDFDEDNNLLVANWGSSHIEVFGP------------------DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECT------------------TCBSCSEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             ccceeeEEecCCcEEEEEcCCCEEEEEeC------------------CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC
Confidence            34568999999998888888899999985                  345555556555567899999999874 45667


Q ss_pred             CCCeEEEEECCCCC
Q 016982          224 HNSMIYFVDDVGPS  237 (379)
Q Consensus       224 ~d~~i~v~d~~~~~  237 (379)
                      .++.|..+++....
T Consensus       288 ~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         288 ENNAVWKFEWQRNG  301 (314)
T ss_dssp             TTTEEEEEECSSCB
T ss_pred             CCCcEEEEECCCCC
Confidence            78999998876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.12  E-value=7.4e-07  Score=72.53  Aligned_cols=201  Identities=11%  Similarity=0.043  Sum_probs=121.2

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC--CeEEEEEeecCC
Q 016982           54 DQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA--KTVCICYYEQEN  131 (379)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~v~i~~~~~~~  131 (379)
                      ...+..++|.++|++.++-..++.|..|+..+++.....  .........++++++|+++++...+  ....++.+....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~--~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF--VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE--eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            345578999999987777668889999998877643333  3445678899999999877765432  233344343322


Q ss_pred             ceeEEEEEe-ecCCcCEEEEEEcCCCcEEEEeeC------CCeEEEEeccccccccccccCCCccCCcccceEEEeecCC
Q 016982          132 NWWVSKLIR-KRHDSSVTSVAWHPNNVFLATTST------DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSF  204 (379)
Q Consensus       132 ~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (379)
                      .. ...... .........+++.|+|++.++...      .+.+..++                   ..+..+..+...-
T Consensus       117 ~~-~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~-------------------~dg~~~~~~~~~~  176 (319)
T d2dg1a1         117 DN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS-------------------PDFRTVTPIIQNI  176 (319)
T ss_dssp             CS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC-------------------TTSCCEEEEEEEE
T ss_pred             ce-eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEe-------------------cccceeEEEeecc
Confidence            11 122221 112345788999999987766432      12233333                   2233333332222


Q ss_pred             cceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeeeeee-------ecCCeeeEEEecCCcEEEEE-eCCCeEEEEe
Q 016982          205 SWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQNVAF-------RDLPLRDVLFVSEKMVIGVG-FDCNPMVFAA  275 (379)
Q Consensus       205 ~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~-~d~~~~i~~~  275 (379)
                      ...+.++|+|+++.|..+ +..+.|..||+............       .......+++.++|++.++. ..+.|.+|+.
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            345789999999876544 56789999998654322221110       01224679999999977754 4566777764


Q ss_pred             c
Q 016982          276 D  276 (379)
Q Consensus       276 ~  276 (379)
                      +
T Consensus       257 ~  257 (319)
T d2dg1a1         257 R  257 (319)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.07  E-value=4.6e-08  Score=78.27  Aligned_cols=229  Identities=9%  Similarity=-0.015  Sum_probs=124.5

Q ss_pred             EeCCC--CcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC-C-----CeEEEEeccCCce
Q 016982           17 AWSPD--HAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH-D-----RNSYVWNQEGSEW   88 (379)
Q Consensus        17 ~~s~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~vw~~~~~~~   88 (379)
                      ..|||  |+.+|..+ +|.|+++|+.+++   ...|..+...+...+|||||+.|+.... +     ..|.+++..+++.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~---~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS---TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC---EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC---EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence            45788  99998774 4789999999873   3345556778899999999999986542 2     2477778877764


Q ss_pred             eeeEEe----ecCCCceeEEEECCCCCEEEEEeCC------CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcE
Q 016982           89 VPTLVI----LRLNRAALCVQWSPKENKFAVGSGA------KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVF  158 (379)
Q Consensus        89 ~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  158 (379)
                      ......    ...........|+|+|+.|+.....      ..+...+.....    ..   ..+........+.+.+..
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~  153 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN----FV---PLNLGPATHILFADGRRV  153 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE----EE---ECCSCSCSEEEEETTEEE
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce----eE---EecCCccceeeecCCCeE
Confidence            332110    1112345678899999998876432      123333333222    11   122222233333333333


Q ss_pred             EEEeeCCCe-----------EEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcC--C
Q 016982          159 LATTSTDGK-----------CRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGH--N  225 (379)
Q Consensus       159 l~~~~~d~~-----------i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--d  225 (379)
                      ++.......           ..+..                   ....................++++.. +.....  .
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  213 (281)
T d1k32a2         154 IGRNTFELPHWKGYRGGTRGKIWIE-------------------VNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGF  213 (281)
T ss_dssp             EEESCSCCTTSTTCCSTTCCEEEEE-------------------EETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSS
T ss_pred             EEeeccccceeeeeccCCcceeeee-------------------ccccceeeccCCccccceeeeecccc-ceecccccc
Confidence            333322111           01111                   01111122222233345555665532 222222  3


Q ss_pred             CeEEEEECCCCCceeeeeeeecCCeeeEEEecCCcEEEEEeCCCeEEEEecCCC
Q 016982          226 SMIYFVDDVGPSPLAQNVAFRDLPLRDVLFVSEKMVIGVGFDCNPMVFAADETG  279 (379)
Q Consensus       226 ~~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~d~~~~i~~~~~~~  279 (379)
                      ..|.++|+.+...  +.+..+ .......|+|||+.|+...++.+++++.+...
T Consensus       214 ~~l~~~d~~g~~~--~~lt~~-~~~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~  264 (281)
T d1k32a2         214 GQIYSTDLDGKDL--RKHTSF-TDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK  264 (281)
T ss_dssp             CEEEEEETTSCSC--EECCCC-CSSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred             cceEEEeCCCCce--EEeecC-CCcccccCcCCCCEEEEEeCCEEEEEECCCCC
Confidence            4688888877653  333322 22233579999999997778877777665443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.6e-08  Score=83.58  Aligned_cols=104  Identities=13%  Similarity=0.210  Sum_probs=73.6

Q ss_pred             ceeEEEeCCCCcEEEEEe---------cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEe
Q 016982           12 CITCHAWSPDHAMVAFCP---------NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWN   82 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   82 (379)
                      .+....||||+++++...         ..+.+.+||+.++....+.........+....|||||+.||... ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            567788999999988764         35789999999875555544444455667789999999998876 56788888


Q ss_pred             ccCCceeeeEEeecCCCc-----------------eeEEEECCCCCEEEEEe
Q 016982           83 QEGSEWVPTLVILRLNRA-----------------ALCVQWSPKENKFAVGS  117 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~  117 (379)
                      ..++...+.. ..+....                 -..+-|||||+.||...
T Consensus       141 ~~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         141 HVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             cCCCceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            8776543332 1111111                 24677999999999875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.98  E-value=3.5e-06  Score=67.48  Aligned_cols=226  Identities=11%  Similarity=0.004  Sum_probs=142.2

Q ss_pred             eEEEeCCCC-cEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982           14 TCHAWSPDH-AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        14 ~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      .+..|++.. ++..+--..+.|..||..+++.   ..+. ....+.++++.++|+++++ +.+ .+.++|..+++.....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~---~~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK---TVHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE---EEEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE---EEEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            456788744 4444444678999999988732   2222 2446789999998876665 444 5889999988754433


Q ss_pred             Eeec--CCCceeEEEECCCCCEEEEEeC----CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEE-EeeCC
Q 016982           93 VILR--LNRAALCVQWSPKENKFAVGSG----AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLA-TTSTD  165 (379)
Q Consensus        93 ~~~~--~~~~v~~~~~~~~~~~l~~~~~----d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d  165 (379)
                      ....  ....+..+.+.|+|++.++...    .+.-.+|.+..++   .....  .....-..++|+++++.+. +-+..
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~---~~~~~--~~~~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK---VTKLF--ADISIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---EEEEE--EEESSEEEEEECTTSCEEEEEETTT
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc---EEEEe--eccCCcceeeecCCCceEEEeeccc
Confidence            2111  1235788999999997666543    2345567676654   22322  2233457899999997554 45567


Q ss_pred             CeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCCCCceeeeeee
Q 016982          166 GKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF  245 (379)
Q Consensus       166 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  245 (379)
                      +.|..|++.......          .........+....+....+++..+|++.++.-..+.|..||.. ++ ++..+..
T Consensus       170 ~~I~~~~~d~~~~~~----------~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~-~~~~i~l  237 (295)
T d2ghsa1         170 NRLMRVPLDARTGLP----------TGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GN-HIARYEV  237 (295)
T ss_dssp             CEEEEEEBCTTTCCB----------SSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CC-EEEEEEC
T ss_pred             ceeeEeeeccccccc----------ccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-Cc-EeeEecC
Confidence            888888762110000          01111222333445567889999999987776678899999954 44 4466655


Q ss_pred             ecCCeeeEEEe-cCCcEE
Q 016982          246 RDLPLRDVLFV-SEKMVI  262 (379)
Q Consensus       246 ~~~~i~~~~~s-~~~~~l  262 (379)
                      ....+++++|- +|.+.|
T Consensus       238 P~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         238 PGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             SCSBEEEEEEESTTSCEE
T ss_pred             CCCceEEEEEeCCCCCEE
Confidence            45568999996 465443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=5.4e-06  Score=66.39  Aligned_cols=193  Identities=6%  Similarity=0.003  Sum_probs=130.4

Q ss_pred             eeccCcceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccC--CCceEEEEEcCCCCEEEEEeC----CCeEE
Q 016982            6 VHQFAQCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH--DQIVSGIDWSVRSNRIVTVSH----DRNSY   79 (379)
Q Consensus         6 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----d~~i~   79 (379)
                      .+.....+.++++.++|+++++. . ..+.++|..+++.+.+......  ...++.+.+.|+|++.++...    .+.-.
T Consensus        54 ~~~~~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~  131 (295)
T d2ghsa1          54 VHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGS  131 (295)
T ss_dssp             EEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEE
T ss_pred             EEECCCCcEEEEEecCCCEEEEE-e-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccccccee
Confidence            34456788899999998877654 4 4689999998865555443322  235789999999987766432    23456


Q ss_pred             EEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEE-eCCCeEEEEEeecCCcee--EEEEEe--ecCCcCEEEEEEcC
Q 016982           80 VWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWW--VSKLIR--KRHDSSVTSVAWHP  154 (379)
Q Consensus        80 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~--~~~~~~--~~~~~~v~~~~~~p  154 (379)
                      +|.+..++......   .-.....++|+++++.+..+ +..+.|..++++......  ....+.  ....+....+++..
T Consensus       132 l~~~~~g~~~~~~~---~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~  208 (295)
T d2ghsa1         132 IYHVAKGKVTKLFA---DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  208 (295)
T ss_dssp             EEEEETTEEEEEEE---EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             EeeecCCcEEEEee---ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC
Confidence            77777776443332   22345789999999866554 457788888876432110  011110  23445678899999


Q ss_pred             CCcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEEC-CCCCEEEEE
Q 016982          155 NNVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWS-PSGNTLAYV  222 (379)
Q Consensus       155 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~  222 (379)
                      +|++.++.-..+.|..||                   +.++.+..+......+++++|- |+.+.|+..
T Consensus       209 ~GnlWva~~~~g~V~~~d-------------------p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         209 EGHIWNARWGEGAVDRYD-------------------TDGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             TSCEEEEEETTTEEEEEC-------------------TTCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCEEeeeeCCCceEEec-------------------CCCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence            999888877788999998                   4678888887666678999995 676666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.45  E-value=5e-05  Score=59.92  Aligned_cols=95  Identities=12%  Similarity=0.105  Sum_probs=63.0

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC----CC--eEEEEEeecCCc
Q 016982           61 DWSVR--SNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG----AK--TVCICYYEQENN  132 (379)
Q Consensus        61 ~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~--~v~i~~~~~~~~  132 (379)
                      ..+|+  |++++..+ ++.|.+.|+.+++..+ +  ..+.+.+...+|||||+.||....    +.  .|.+++...+. 
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-L--t~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~-   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-I--VSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-E--ECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-E--ecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc-
Confidence            35788  99888765 4678888999887432 2  456678899999999999987643    22  24444444443 


Q ss_pred             eeEEEEEe------ecCCcCEEEEEEcCCCcEEEEee
Q 016982          133 WWVSKLIR------KRHDSSVTSVAWHPNNVFLATTS  163 (379)
Q Consensus       133 ~~~~~~~~------~~~~~~v~~~~~~p~~~~l~~~~  163 (379)
                         .+.+.      ...........|+|+++.|+...
T Consensus        80 ---~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          80 ---IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ---EEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             ---eEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence               22220      12223456789999999888754

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.31  E-value=0.00019  Score=58.60  Aligned_cols=238  Identities=9%  Similarity=0.010  Sum_probs=135.0

Q ss_pred             EEEeCC---CCcEEEEEe-cCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC--CCCEEEEEeCCC------------
Q 016982           15 CHAWSP---DHAMVAFCP-NNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV--RSNRIVTVSHDR------------   76 (379)
Q Consensus        15 ~~~~s~---~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~------------   76 (379)
                      .+++..   ||++|++.. .+.+|-+.|+++-+...+-.++ ....+..++..+  +-.+++..+.+.            
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iP-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecC-CCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            455543   788887765 5789999999887433444443 234567777654  446777766532            


Q ss_pred             ------eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCC---------------eEEEEEe--------
Q 016982           77 ------NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAK---------------TVCICYY--------  127 (379)
Q Consensus        77 ------~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~v~i~~~--------  127 (379)
                            .+.+.|..+.+....+..   .+....+.++++|+++++.+.+.               .+.++++        
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~  244 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  244 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             hhhcceEEEEEecCCceEEEEeee---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhh
Confidence                  356788888876555543   34567899999999999876431               1223332        


Q ss_pred             ---------------ecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee-CCCeEEEEeccccccccccccCCCccCC
Q 016982          128 ---------------EQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS-TDGKCRVFSTFIKGVDIKEKKEGTSSDT  191 (379)
Q Consensus       128 ---------------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~~~~  191 (379)
                                     .........+.+  .-......+..+|||+++++++ .+.++.|+|+.--...+....      .
T Consensus       245 ~Gk~~eingV~VVD~~~~~~~~v~~yI--PVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~------~  316 (459)
T d1fwxa2         245 AGDYQELNGVKVVDGRKEASSLFTRYI--PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA------D  316 (459)
T ss_dssp             HTCSEEETTEEEEECSGG--CSSEEEE--EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-------
T ss_pred             cCCcEEeCCceeecccccCCcceeEEE--ecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC------C
Confidence                           211111111122  1112245789999999887766 488999999741100000000      0


Q ss_pred             cccceEEEeecCCcceEEEEECCCCCEEEEEcCCCeEEEEECCC---------CCceeeeeee-----ecCCeeeEEEec
Q 016982          192 KFGEQILQLDLSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVG---------PSPLAQNVAF-----RDLPLRDVLFVS  257 (379)
Q Consensus       192 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~-----~~~~i~~~~~s~  257 (379)
                      .......+.+. .-....-+|+..|....+---|..|.-|++..         ...++..+..     |......-...|
T Consensus       317 ~~~~~~~e~el-glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~  395 (459)
T d1fwxa2         317 PRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA  395 (459)
T ss_dssp             GGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             ccccEEeeccc-CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCC
Confidence            11112222222 22345678998886555556899999999742         1223344432     222122223467


Q ss_pred             CCcEEEEE
Q 016982          258 EKMVIGVG  265 (379)
Q Consensus       258 ~~~~l~~~  265 (379)
                      +|++|++.
T Consensus       396 dgk~l~~~  403 (459)
T d1fwxa2         396 TNDWLVCL  403 (459)
T ss_dssp             CSSEEEEE
T ss_pred             CCCEEEEe
Confidence            88888754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.07  E-value=0.0016  Score=53.74  Aligned_cols=117  Identities=13%  Similarity=0.185  Sum_probs=78.4

Q ss_pred             eEEEeCCCCcEEEEEecC-----C------eEEEEEecCCceEEEEEec-cCCCceEEEEEcCCCCEEEEEeCC-CeEEE
Q 016982           14 TCHAWSPDHAMVAFCPNN-----N------EVHIYKLIQEKWEKLHVLQ-KHDQIVSGIDWSVRSNRIVTVSHD-RNSYV   80 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~d-----g------~i~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-~~i~v   80 (379)
                      .......+|++++.|+.+     +      .+.+||..++++.....+. .+.......++.++++.++.|+.+ ..+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            344455688998888742     1      3779999988765544332 233334566788999998888655 57999


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC------CeEEEEEeecCC
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA------KTVCICYYEQEN  131 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~~~~~~~  131 (379)
                      ||..+..+...-.. .....-...+..+||++++.++.+      ..+.+||..+..
T Consensus       103 yd~~~~~w~~~~~~-~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         103 YDSSSDSWIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEGGGTEEEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCccCcccccccc-cccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            99999876543321 222334566778899999988752      357888876654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=0.0017  Score=50.30  Aligned_cols=224  Identities=9%  Similarity=0.005  Sum_probs=130.7

Q ss_pred             ccCcceeEEEeCCCCcEEEEE-ecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccC
Q 016982            8 QFAQCITCHAWSPDHAMVAFC-PNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEG   85 (379)
Q Consensus         8 ~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~   85 (379)
                      .+...+.+++|.+..+.|... ..++.|+..++.+..  ....+......+..+++..-++.|..+. ..+.|.+.++..
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            344557789998877766655 456788888887653  2223333334678899987676776554 567899999887


Q ss_pred             CceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-CeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-e
Q 016982           86 SEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-KTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-S  163 (379)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~  163 (379)
                      .......  ...-..+..+++.|...+++..... +..+|+........  ...+....-.....+++.+.++.|... .
T Consensus       111 ~~~~~l~--~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~--~~~i~~~~~~~P~glaiD~~~~~lYw~d~  186 (263)
T d1npea_         111 TQRRVLF--DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDA  186 (263)
T ss_dssp             CSCEEEE--CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEe--cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC--ceeeeeecccccceEEEeecCcEEEEEeC
Confidence            6532222  2233567899999977766655432 23345444332210  122213334566899998877766555 4


Q ss_pred             CCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeee
Q 016982          164 TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQN  242 (379)
Q Consensus       164 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~  242 (379)
                      ..+.|...++.                  .......+.+.. ...+|++.  +.+|... ...+.|...|..+++.....
T Consensus       187 ~~~~I~~~~~~------------------g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         187 GTHRAECLNPA------------------QPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             TTTEEEEEETT------------------EEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECC------------------CCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            56788888762                  111112222222 24577775  4455544 46688999998877643222


Q ss_pred             eeeecCCeeeEEEecC
Q 016982          243 VAFRDLPLRDVLFVSE  258 (379)
Q Consensus       243 ~~~~~~~i~~~~~s~~  258 (379)
                      ..........+...++
T Consensus       246 ~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         246 HPHKQTRLYGITIALS  261 (263)
T ss_dssp             CCSSCCCCCCEEEECS
T ss_pred             CCCCCCCcceEEEeCC
Confidence            2233344556665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.95  E-value=0.003  Score=51.47  Aligned_cols=204  Identities=9%  Similarity=-0.007  Sum_probs=114.0

Q ss_pred             CCCEEEEEe-CCCeEEEEeccCCceeeeEEeecCCCceeEEEECC--CCCEEEEEeCCC------------------eEE
Q 016982           65 RSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSGAK------------------TVC  123 (379)
Q Consensus        65 ~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~------------------~v~  123 (379)
                      ||++|+... .+..|.+-|+.+.+......+ +....+..++..+  +..+++..+.+.                  .+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            678887665 678899999999987666653 4456667777655  445666665522                  244


Q ss_pred             EEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCCC---------------eEEEEecccccccccccc----
Q 016982          124 ICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTDG---------------KCRVFSTFIKGVDIKEKK----  184 (379)
Q Consensus       124 i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---------------~i~v~d~~~~~~~~~~~~----  184 (379)
                      ++|.++.+   +...+  .-.+....+.++|+|+++++.+.+.               .+.+++......-.....    
T Consensus       177 ~ID~~tm~---V~~QV--~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         177 AVDADKWE---VAWQV--LVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEETTTTE---EEEEE--EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEecCCce---EEEEe--eeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            55655554   22222  1223456789999999998876532               244555321000000000    


Q ss_pred             -CCCccCCc---ccceEEEeecCCcceEEEEECCCCCEEEEEc-CCCeEEEEECCCCCc-----------eeeeeeeecC
Q 016982          185 -EGTSSDTK---FGEQILQLDLSFSWAFGVKWSPSGNTLAYVG-HNSMIYFVDDVGPSP-----------LAQNVAFRDL  248 (379)
Q Consensus       185 -~~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~v~d~~~~~~-----------~~~~~~~~~~  248 (379)
                       .....+..   ....+..+.. ......+..+|||+++++++ .+.++.|+|+++-..           +.... ..+.
T Consensus       252 ngV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~-elgl  329 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGL  329 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC-BCCS
T ss_pred             CCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec-ccCc
Confidence             00000000   1112222222 22356789999999988766 678999999864211           11111 1233


Q ss_pred             CeeeEEEecCCcEEEE-EeCCCeEEEEec
Q 016982          249 PLRDVLFVSEKMVIGV-GFDCNPMVFAAD  276 (379)
Q Consensus       249 ~i~~~~~s~~~~~l~~-~~d~~~~i~~~~  276 (379)
                      ....-+|...|....+ --|..+.-|+..
T Consensus       330 gPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         330 GPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CccccccCCCceEEEEeeccceEEEEecc
Confidence            3456788777753332 357788888863

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=0.0036  Score=48.28  Aligned_cols=234  Identities=12%  Similarity=0.156  Sum_probs=138.6

Q ss_pred             EEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEe
Q 016982           15 CHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVI   94 (379)
Q Consensus        15 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~   94 (379)
                      +.--+|..+.||.-+ ...+++||+++.  +.+....- ..+|.--.|-.+. .|+..+ +..|+-|+++... .+...+
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK--~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s-~P~k~f  139 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMK--SKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES-QPVKMF  139 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTT--EEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSC-CCEEEE
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHh--hhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCC-Cchhhh
Confidence            344578888887765 468999999998  55555443 3467777786544 555544 3579999996543 233333


Q ss_pred             ecCC----CceeEEEECCCCCEEEEEeC-------CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCC---cEEE
Q 016982           95 LRLN----RAALCVQWSPKENKFAVGSG-------AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNN---VFLA  160 (379)
Q Consensus        95 ~~~~----~~v~~~~~~~~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~  160 (379)
                      ..|.    ..|-....+++.++++..+-       .|.+.+|..+.+.    .+.+ .+|.+....+...-+.   +.++
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~----sQ~i-eGhaa~F~~~~~~g~~~~~~lf~  214 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV----SQPI-EGHAASFAQFKMEGNAEESTLFC  214 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE----EEEE-CCSEEEEEEECCTTCSSCEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc----Cccc-cceeeeeEEEEcCCCCCCceEEE
Confidence            3433    46777788889998776542       4667888777664    6666 7777655555443221   3444


Q ss_pred             Eee---CCCeEEEEeccccccccccccCCCccCCcccceEEEee----cCCcceEEEEECCCCCEEEEEcCCCeEEEEEC
Q 016982          161 TTS---TDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLD----LSFSWAFGVKWSPSGNTLAYVGHNSMIYFVDD  233 (379)
Q Consensus       161 ~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~  233 (379)
                      .+.   ..+.++|.++.     ......     ....+....+.    ...+-..++..|+.-..+..-..-|.+++||+
T Consensus       215 fa~r~~~~~kLhIiEig-----~~~~g~-----~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDl  284 (327)
T d1utca2         215 FAVRGQAGGKLHIIEVG-----TPPTGN-----QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL  284 (327)
T ss_dssp             EEEEETTEEEEEEEECS-----CCCTTC-----CCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred             EEECCCCCcEEEEEEcC-----CCccCC-----CCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEc
Confidence            332   23578888762     111100     01112222221    12344567888888778888889999999999


Q ss_pred             CCCCceeeeeeeecCCeeeEEEec-CCcEEEEEeCCCeE
Q 016982          234 VGPSPLAQNVAFRDLPLRDVLFVS-EKMVIGVGFDCNPM  271 (379)
Q Consensus       234 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~d~~~~  271 (379)
                      .++..+ ..-+-...+|...+-.. .+-+++...+|.+.
T Consensus       285 eTgt~i-~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         285 ETGTCI-YMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTCCEE-EEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ccccEE-EEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            998743 33333345554333332 24455555555544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.56  E-value=0.0085  Score=49.12  Aligned_cols=75  Identities=11%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             eEEEeCCCCcEEEEEecC-CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC------CeEEEEeccCC
Q 016982           14 TCHAWSPDHAMVAFCPNN-NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD------RNSYVWNQEGS   86 (379)
Q Consensus        14 ~~~~~s~~~~~l~~~~~d-g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~   86 (379)
                      .+.++.++|++++.|+.+ ..+.+||..+..+.....+.... .-.+.+..+||+.++.++.+      ..+.+||..+.
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r-~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccc-cccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            355778899999988654 58999999998776655544332 23456777899988888643      35899999988


Q ss_pred             cee
Q 016982           87 EWV   89 (379)
Q Consensus        87 ~~~   89 (379)
                      ++.
T Consensus       158 ~W~  160 (387)
T d1k3ia3         158 TWT  160 (387)
T ss_dssp             EEE
T ss_pred             cee
Confidence            754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.01  Score=45.89  Aligned_cols=187  Identities=20%  Similarity=0.149  Sum_probs=112.3

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCce--eeeEEeecCCCc
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEW--VPTLVILRLNRA  100 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~--~~~~~~~~~~~~  100 (379)
                      +|+.+.. ..|+..++.+.+...+  +. ....+.+++|.+..+.|.... ..+.|...++.....  ............
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~--~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~   78 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSL--IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA   78 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEE--EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEECC-CeEEEEECCCCcceee--eC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCC
Confidence            4555543 4688889887643333  33 445677999999888887765 455676666654221  111111223355


Q ss_pred             eeEEEECCCCCEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEee--CCCeEEEEeccccc
Q 016982          101 ALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTS--TDGKCRVFSTFIKG  177 (379)
Q Consensus       101 v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~--~d~~i~v~d~~~~~  177 (379)
                      +..+++.+.+..|..+ ...+.|.+.+++...   ....+ .........++++|...+|....  ..+.|.-.++    
T Consensus        79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~~~~-~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~----  150 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL----  150 (266)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET----
T ss_pred             cceEEEeeccceEEEEecCCCEEEeEecCCce---EEEEE-cCCCCCcceEEEEcccCeEEEeccCCCcceeEecc----
Confidence            6788888755555554 456789998887665   23333 44556678999998665555443  3344555543    


Q ss_pred             cccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCC
Q 016982          178 VDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPS  237 (379)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~  237 (379)
                                     .+.....+ ...-.....+++++.++.|..+ ...+.|...++....
T Consensus       151 ---------------dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         151 ---------------NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             ---------------TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ---------------CCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence                           22323333 2223457899999988777766 556889999987654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.017  Score=44.51  Aligned_cols=209  Identities=9%  Similarity=0.031  Sum_probs=122.4

Q ss_pred             CcEEEEEecCCeEEEEEecCCce---EEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEeccCCceeeeEEeecC
Q 016982           22 HAMVAFCPNNNEVHIYKLIQEKW---EKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQEGSEWVPTLVILRL   97 (379)
Q Consensus        22 ~~~l~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~   97 (379)
                      |.+|+.+.. +.|+-.+++....   .....+..+...+.+++|.+..+.|..+. .++.|+..++.+.......  ...
T Consensus         1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~--~~~   77 (263)
T d1npea_           1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--RQD   77 (263)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--CTT
T ss_pred             CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE--Eec
Confidence            445665544 5787788765421   11222333445678899998888887664 5577888888766532222  223


Q ss_pred             CCceeEEEECCCCCEEEEE-eCCCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEeeCC-CeEEEEeccc
Q 016982           98 NRAALCVQWSPKENKFAVG-SGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATTSTD-GKCRVFSTFI  175 (379)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~~i~v~d~~~  175 (379)
                      ...+..+++..-+..|..+ ...+.|.+.+++....    +.+..........++++|...++...... +..+|+... 
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~----~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~-  152 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH-  152 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE-
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCceE----EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEec-
Confidence            3567889998756555544 4567898888776552    22313334678899999977666544322 233454331 


Q ss_pred             cccccccccCCCccCCcccceEEEe-ecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeeeeeeecCCeeeE
Q 016982          176 KGVDIKEKKEGTSSDTKFGEQILQL-DLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQNVAFRDLPLRDV  253 (379)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~i~~~  253 (379)
                                      ..+.....+ ...-.....+++++.++.|..+ ...+.|...|+..... ...+.+.. ...++
T Consensus       153 ----------------~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~-~~v~~~~~-~P~~l  214 (263)
T d1npea_         153 ----------------MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEGLQ-YPFAV  214 (263)
T ss_dssp             ----------------TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEECCC-SEEEE
T ss_pred             ----------------CCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe-EEEECCCC-CcEEE
Confidence                            112211222 2223456899999888777665 4678899999876432 12222222 23567


Q ss_pred             EEe
Q 016982          254 LFV  256 (379)
Q Consensus       254 ~~s  256 (379)
                      ++.
T Consensus       215 av~  217 (263)
T d1npea_         215 TSY  217 (263)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.23  E-value=0.041  Score=45.75  Aligned_cols=102  Identities=13%  Similarity=0.056  Sum_probs=64.3

Q ss_pred             ceeEEEeCCCCcEEEEEec-----CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCC-----------
Q 016982           12 CITCHAWSPDHAMVAFCPN-----NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHD-----------   75 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------   75 (379)
                      .+...++|||++++|.+-.     ...++++|+.+++... ..+..  .....++|++|++.|+....+           
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-DVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-EEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-ccccc--ccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            4456788999999986532     2479999999984322 22321  122578999999887655432           


Q ss_pred             -----CeEEEEeccCCceeeeEEeecCC--CceeEEEECCCCCEEEEE
Q 016982           76 -----RNSYVWNQEGSEWVPTLVILRLN--RAALCVQWSPKENKFAVG  116 (379)
Q Consensus        76 -----~~i~vw~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~  116 (379)
                           ..|..+.+.+......+......  ..+..+..++++++++..
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                 25788888776433333323222  345667788898887654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.78  E-value=0.087  Score=42.03  Aligned_cols=193  Identities=13%  Similarity=0.048  Sum_probs=105.0

Q ss_pred             EEEEEcCCCCEEEEEeC------------CCeEEEEeccCCceee-eEEeecCC-----CceeEEEE--CCCCC-EEEEE
Q 016982           58 SGIDWSVRSNRIVTVSH------------DRNSYVWNQEGSEWVP-TLVILRLN-----RAALCVQW--SPKEN-KFAVG  116 (379)
Q Consensus        58 ~~~~~~~~~~~l~~~~~------------d~~i~vw~~~~~~~~~-~~~~~~~~-----~~v~~~~~--~~~~~-~l~~~  116 (379)
                      -.++..|+|..+++++.            .|.|.++|+.+.+... .+......     -....+.+  .++|. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            45777788766655431            4889999987654222 22211111     12233433  34555 34444


Q ss_pred             e---CCCeEEEEEeecCCc-eeEEEEEeecCCcCEEEEEEcCCCcEEEEeeC---C------------CeEEEEeccccc
Q 016982          117 S---GAKTVCICYYEQENN-WWVSKLIRKRHDSSVTSVAWHPNNVFLATTST---D------------GKCRVFSTFIKG  177 (379)
Q Consensus       117 ~---~d~~v~i~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~---d------------~~i~v~d~~~~~  177 (379)
                      .   ...+|.+|++..... ......+........+++++..++.+++|-..   +            +...+|..    
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~----  193 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY----  193 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE----
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE----
Confidence            3   356788888876542 11122221233356789999888888887321   0            12223322    


Q ss_pred             cccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCceeeeee-eecCCeeeEEE
Q 016982          178 VDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPLAQNVA-FRDLPLRDVLF  255 (379)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~  255 (379)
                                    ..+.. ......-...+.++++||+++|+.+ ...+.|++|++........... .-....-.+.+
T Consensus       194 --------------~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~  258 (340)
T d1v04a_         194 --------------SPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISV  258 (340)
T ss_dssp             --------------CSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEE
T ss_pred             --------------cCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEE
Confidence                          11121 1111123447899999999887665 4678899999876543322111 12344567788


Q ss_pred             ec-CCcEEEEEeCCC
Q 016982          256 VS-EKMVIGVGFDCN  269 (379)
Q Consensus       256 s~-~~~~l~~~~d~~  269 (379)
                      .+ +|.+.+++....
T Consensus       259 d~~~g~lwva~~p~~  273 (340)
T d1v04a_         259 DPVTGDLWVGCHPNG  273 (340)
T ss_dssp             CTTTCCEEEEEESCH
T ss_pred             ecCCCEEEEEECCcc
Confidence            65 567777765543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.072  Score=40.87  Aligned_cols=207  Identities=8%  Similarity=-0.036  Sum_probs=116.7

Q ss_pred             cCcceeEEEeCCCCcEEEEEe-cCCeEEEEEecCCc--eEEEEEeccCCCceEEEEEcCCCCEEEEEe-CCCeEEEEecc
Q 016982            9 FAQCITCHAWSPDHAMVAFCP-NNNEVHIYKLIQEK--WEKLHVLQKHDQIVSGIDWSVRSNRIVTVS-HDRNSYVWNQE   84 (379)
Q Consensus         9 ~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~   84 (379)
                      ....+.+++|++..+.|.... ..+.|+..++....  ......+......+..+++.+.+..|..+. ..+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            344567888888776665553 45666666654321  011122222334567788887676665554 55789999998


Q ss_pred             CCceeeeEEeecCCCceeEEEECCCCCEEEEEeC--CCeEEEEEeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG--AKTVCICYYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  162 (379)
                      ........  .........++++|...++.....  .+.|.-.+++...   ..... ...-.....+++.+.++.|..+
T Consensus       108 g~~~~~~~--~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~---~~~l~-~~~~~~p~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         108 GVKRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLV-TENIQWPNGITLDLLSGRLYWV  181 (266)
T ss_dssp             SSSEEEEE--ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEE-CSSCSCEEEEEEETTTTEEEEE
T ss_pred             CceEEEEE--cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc---eeccc-ccccceeeEEEeeccccEEEEe
Confidence            76533333  334466789999986666655443  3345544444443   22222 3334567899999877666655


Q ss_pred             -eCCCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEE-cCCCeEEEEECCCCCce
Q 016982          163 -STDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYV-GHNSMIYFVDDVGPSPL  239 (379)
Q Consensus       163 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~d~~i~v~d~~~~~~~  239 (379)
                       ...+.|...++.+                .....+...........++++.  +.+|..+ ..++.|...+..++...
T Consensus       182 d~~~~~I~~~~~dG----------------~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         182 DSKLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             ETTTTEEEEEETTS----------------CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             cCCcCEEEEEECCC----------------CCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcce
Confidence             4567888877621                1111122212222235567766  3445444 46788888887776543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.74  E-value=0.15  Score=44.21  Aligned_cols=111  Identities=16%  Similarity=0.139  Sum_probs=61.8

Q ss_pred             CCcEEEEEecCCeEEEEEe-cCCceEEEEEeccCCC----------c-eEEEEEcCC----CCEEEEEeCCCeEEEEecc
Q 016982           21 DHAMVAFCPNNNEVHIYKL-IQEKWEKLHVLQKHDQ----------I-VSGIDWSVR----SNRIVTVSHDRNSYVWNQE   84 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~~~~~~----------~-v~~~~~~~~----~~~l~~~~~d~~i~vw~~~   84 (379)
                      +|.++++.+.++.+...|. +++  +.+-.+.....          . -..+++.++    ..+|+.++.|+.|.-.|.+
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG--~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~  139 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPG--TILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE  139 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTT--SEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCC--CEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccc
Confidence            3444444445577887786 456  45444321110          0 123455433    2468888999999999999


Q ss_pred             CCceeeeEEeecCCCceeEEEECC--CCCEEEEEeC------CCeEEEEEeecCCcee
Q 016982           85 GSEWVPTLVILRLNRAALCVQWSP--KENKFAVGSG------AKTVCICYYEQENNWW  134 (379)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~~~  134 (379)
                      +++....+....... -..+.-.|  -+..++++..      .|.|+-+|..+++..+
T Consensus       140 tG~~~w~~~~~d~~~-~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         140 TGETVWKVENSDIKV-GSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             TCCEEEEEECCCGGG-TCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             cCceecccccccccc-ccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEE
Confidence            998666553211111 01111122  1345566543      4889999998888533

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.60  E-value=0.12  Score=41.22  Aligned_cols=157  Identities=11%  Similarity=0.088  Sum_probs=89.2

Q ss_pred             ceeEEEeCCCCcEEEEEec------------CCeEEEEEecCCceEE--EEEeccCC----CceEEEEE--cCCCC-EEE
Q 016982           12 CITCHAWSPDHAMVAFCPN------------NNEVHIYKLIQEKWEK--LHVLQKHD----QIVSGIDW--SVRSN-RIV   70 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~------------dg~i~i~~~~~~~~~~--~~~~~~~~----~~v~~~~~--~~~~~-~l~   70 (379)
                      .--.+...|+|..+++++.            .|.|.++|+++.+...  +.......    -....+..  .++|. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456788899987766532            4899999987653222  11111110    11233333  44554 344


Q ss_pred             EEe---CCCeEEEEeccCCce--eeeEEee-cCCCceeEEEECCCCCEEEEEeC---------------CCeEEEEEeec
Q 016982           71 TVS---HDRNSYVWNQEGSEW--VPTLVIL-RLNRAALCVQWSPKENKFAVGSG---------------AKTVCICYYEQ  129 (379)
Q Consensus        71 ~~~---~d~~i~vw~~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---------------d~~v~i~~~~~  129 (379)
                      +..   ...+|.+|++.....  ...-... +......++.+..++.++++-..               -+...+|..+.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            443   345788888764432  1111111 12245688888888887777311               13445666666


Q ss_pred             CCceeEEEEEeecCCcCEEEEEEcCCCcEEEEe-eCCCeEEEEec
Q 016982          130 ENNWWVSKLIRKRHDSSVTSVAWHPNNVFLATT-STDGKCRVFST  173 (379)
Q Consensus       130 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~~i~v~d~  173 (379)
                      +.    .+.+ ...-...+.++++|++++|+.+ +..+.|++|++
T Consensus       196 ~~----~~~~-~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         196 ND----VRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             SC----EEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             Cc----eEEE-cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEe
Confidence            55    2222 2233457899999999766554 45788999986

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.57  E-value=0.19  Score=43.30  Aligned_cols=106  Identities=11%  Similarity=0.124  Sum_probs=59.6

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCC----------Cce-EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD----------QIV-SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      .|.+++.++.|.-+|.+++  +.+-.+....          ..+ ..+.+.  ...++.++.|+.+.-.|..+++.+-..
T Consensus        79 ~vyv~t~~~~v~AlDa~TG--~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTG--NRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             EEEEECGGGCEEEEETTTT--EEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCC--CeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecc
Confidence            4556677889999999988  5655543211          011 112222  346777788899998999999865444


Q ss_pred             EeecCCCceeEEEECC--CCCEEEEEeC------CCeEEEEEeecCCce
Q 016982           93 VILRLNRAALCVQWSP--KENKFAVGSG------AKTVCICYYEQENNW  133 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~~  133 (379)
                      ....+...-..+.-.|  -+..+++++.      .|.|.-+|.++++..
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~  203 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK  203 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccce
Confidence            3221221111111111  1334555432      467888888888743

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.47  E-value=0.18  Score=41.89  Aligned_cols=55  Identities=7%  Similarity=0.084  Sum_probs=41.6

Q ss_pred             cceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEecc------CCCceEEEEEcCC
Q 016982           11 QCITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQK------HDQIVSGIDWSVR   65 (379)
Q Consensus        11 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~   65 (379)
                      +..++|+|.|||++|++--..|.|++++..++....+..+..      -......|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            567799999999988877557999999887776555555432      1346788999986

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.43  E-value=0.23  Score=42.59  Aligned_cols=106  Identities=10%  Similarity=0.111  Sum_probs=59.0

Q ss_pred             EEEEEecCCeEEEEEecCCceEEEEEeccCCC----------ce-EEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeE
Q 016982           24 MVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQ----------IV-SGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        24 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~   92 (379)
                      .|.+++.++.|.-.|.+++  +.+-.+.....          .+ ..++.  .+..++.+..++.|.-.|..+++.+-..
T Consensus        68 ~vyv~t~~~~v~AlDa~tG--~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASG--KELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTC--CEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCC--CEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEecc
Confidence            4556667889998999988  45554421110          00 11111  1456888888999999999999866555


Q ss_pred             EeecCCCceeEEEECC--CCCEEEEEeC------CCeEEEEEeecCCcee
Q 016982           93 VILRLNRAALCVQWSP--KENKFAVGSG------AKTVCICYYEQENNWW  134 (379)
Q Consensus        93 ~~~~~~~~v~~~~~~~--~~~~l~~~~~------d~~v~i~~~~~~~~~~  134 (379)
                      ........ ..+.-.|  ....++++..      .|.|.-+|.++++..+
T Consensus       144 ~~~~~~~~-~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         144 QTTDPAKP-YSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             ECSCTTSS-CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CccCcccc-eeeeeeeeeecCcccccccceeccccceEEEEECCCceEEe
Confidence            33222111 1111111  1233444332      3568888888877533

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.69  E-value=0.54  Score=40.34  Aligned_cols=48  Identities=15%  Similarity=0.131  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCCeEEEEECCCCCceeeeeee-ecCCeeeEEEecCCc-EEE
Q 016982          215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAF-RDLPLRDVLFVSEKM-VIG  263 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~~~-~l~  263 (379)
                      .+.++++++.|+.++.+|.++++.+ -.... ....-.-+.|..||+ ||+
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~l-W~~~l~~~~~a~P~ty~~dGkqYi~  523 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKEL-WNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEE-EEEECCCCceecceEEEECCEEEEE
Confidence            4667888999999999999999865 33332 122222366667886 554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.51  Score=37.86  Aligned_cols=140  Identities=5%  Similarity=-0.009  Sum_probs=85.1

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecC-----------CceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQ-----------EKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYV   80 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v   80 (379)
                      ...-++.++...+++.|+.+ .+.|..++.           ...+....+    ..|..++|+-+  .|+... ++.+..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~~-~~~l~~  109 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVST-RNALYS  109 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEEE-SSEEEE
T ss_pred             ccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEEe-CCCEEE
Confidence            45567888877788887776 567776431           112222222    25888999744  555543 456777


Q ss_pred             EeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEE-eecCCcCEEEEEEcCCCcEE
Q 016982           81 WNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLI-RKRHDSSVTSVAWHPNNVFL  159 (379)
Q Consensus        81 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l  159 (379)
                      ++...-....  .......++..+.++|.  .++....++.+.++++.......+..-. .....+.+.+++|++.++.+
T Consensus       110 ~~~~~l~~~~--~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         110 LDLEELSEFR--TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EESSSTTCEE--EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             EEeecccccc--ccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            7776543221  21234567788888774  5666777889989888777532221100 01234667888888888888


Q ss_pred             EEee
Q 016982          160 ATTS  163 (379)
Q Consensus       160 ~~~~  163 (379)
                      +++.
T Consensus       186 v~~~  189 (381)
T d1xipa_         186 FAWR  189 (381)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            7764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.30  E-value=0.5  Score=37.45  Aligned_cols=204  Identities=14%  Similarity=0.082  Sum_probs=111.7

Q ss_pred             CCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcC----CC--CEEEEEe-CC---CeEEEEeccCCc-e
Q 016982           20 PDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSV----RS--NRIVTVS-HD---RNSYVWNQEGSE-W   88 (379)
Q Consensus        20 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~--~~l~~~~-~d---~~i~vw~~~~~~-~   88 (379)
                      |+..+++....++-|++||++..   .+..+.  .+.++.+..-.    .+  .-|+.++ .+   .+|.+|.+.... .
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~---~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGK---MLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCC---EEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCc---EEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            34456666666667999999754   555544  24555544321    22  2344554 22   358888875332 1


Q ss_pred             eeeEEe-----ecCCCceeEEEE--CCC-CC-EEEEEeCCCeEEEEEeecCCce----eEEEEEeecCCcCEEEEEEcCC
Q 016982           89 VPTLVI-----LRLNRAALCVQW--SPK-EN-KFAVGSGAKTVCICYYEQENNW----WVSKLIRKRHDSSVTSVAWHPN  155 (379)
Q Consensus        89 ~~~~~~-----~~~~~~v~~~~~--~~~-~~-~l~~~~~d~~v~i~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~p~  155 (379)
                      ...+..     ......+..+|+  ++. +. ++++...+|.+..|.+......    ...+.+  .....+..|.+.+.
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde  190 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMNSQTEGMAADDE  190 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECSSCEEEEEEETT
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCCCccceEEEeCC
Confidence            111110     011234667776  664 44 4566667899998887543321    122333  45567899999998


Q ss_pred             CcEEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeec--CCcceEEEEECC--C--CCEEEEEcCCCeEE
Q 016982          156 NVFLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDL--SFSWAFGVKWSP--S--GNTLAYVGHNSMIY  229 (379)
Q Consensus       156 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp--~--~~~l~~~~~d~~i~  229 (379)
                      ...|..+-++..+..++..       ...      ......+....+  ....+-.|+.-.  +  |-+|++.-.+++..
T Consensus       191 ~~~LyisEE~~Giw~~~a~-------~~~------~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAE-------PDG------GSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             TTEEEEEETTTEEEEEESS-------TTS------CSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCcEEEecCccceEEEEec-------cCC------CccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            8888888887766555531       000      011222222221  234566666543  3  33444444678999


Q ss_pred             EEECCCCCceeeee
Q 016982          230 FVDDVGPSPLAQNV  243 (379)
Q Consensus       230 v~d~~~~~~~~~~~  243 (379)
                      +||.......+-.+
T Consensus       258 vydr~~~~~~~g~F  271 (353)
T d1h6la_         258 IYERQGQNKYVADF  271 (353)
T ss_dssp             EEESSTTCCEEEEE
T ss_pred             EEecCCCccccceE
Confidence            99987754444443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.22  E-value=0.79  Score=39.25  Aligned_cols=69  Identities=4%  Similarity=-0.061  Sum_probs=38.5

Q ss_pred             cEEEEEecCCeEEEEEecCCceEEEEEeccC-C-CceEEEEEcCCCCEEEEEe------CCCeEEEEeccCCceeeeE
Q 016982           23 AMVAFCPNNNEVHIYKLIQEKWEKLHVLQKH-D-QIVSGIDWSVRSNRIVTVS------HDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        23 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~------~d~~i~vw~~~~~~~~~~~   92 (379)
                      ..++.++.||.+.-.|.++++......+... . ..++.--.-.+ ..++.+.      ..|.|.-+|+.+++.+-.+
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence            4566777889999999998843222222111 1 11111111112 3444444      3678999999999865544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.65  Score=35.40  Aligned_cols=57  Identities=16%  Similarity=0.207  Sum_probs=34.1

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeC---------CCeEEEEeccCCceee
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSH---------DRNSYVWNQEGSEWVP   90 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~vw~~~~~~~~~   90 (379)
                      ..+.+||.++++|..+..++.....-..+.+  +++.++.|+.         -..+.+||..+.++..
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~   84 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP   84 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccc
Confidence            3688999999888777655543322222222  4555555542         1357788888776544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.32  E-value=1.1  Score=36.87  Aligned_cols=110  Identities=9%  Similarity=0.074  Sum_probs=62.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEee------cCCCceeEEEECCC---CCEEEEEeC-------
Q 016982           55 QIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVIL------RLNRAALCVQWSPK---ENKFAVGSG-------  118 (379)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~~~-------  118 (379)
                      ....+|+|.|+++++++--..|.|++++..+++......+.      ........++++|+   ..++.....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            35579999999988887655799999998877644333221      12356788999995   333433211       


Q ss_pred             C----Ce--EEEEEeecCCce-----eEEEEEeecCCcCEEEEEEcCCCcEEEEeeC
Q 016982          119 A----KT--VCICYYEQENNW-----WVSKLIRKRHDSSVTSVAWHPNNVFLATTST  164 (379)
Q Consensus       119 d----~~--v~i~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  164 (379)
                      +    ..  +..+..+.....     .+...+..........+.|.||+.++++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    11  223333322211     0111111122234578999999987776654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.48  E-value=1.4  Score=35.15  Aligned_cols=138  Identities=11%  Similarity=0.054  Sum_probs=76.7

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeee
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPT   91 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~   91 (379)
                      .|..++|+.|  .|++. .++.+..++...-  ........-..++..+.++|.  .++....++.+.++++..+...+.
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l--~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~  160 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEEL--SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL  160 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSST--TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeecc--ccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc
Confidence            5888999754  45554 4467888877653  111222223456788888875  456667789999999988864332


Q ss_pred             EE---eecCCCceeEEEECCCCCEEEEEeCCCeEEEE-EeecCCceeEEEEEeecCCcCEEEEEEcCCCcEEEE
Q 016982           92 LV---ILRLNRAALCVQWSPKENKFAVGSGAKTVCIC-YYEQENNWWVSKLIRKRHDSSVTSVAWHPNNVFLAT  161 (379)
Q Consensus        92 ~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  161 (379)
                      ..   .....+.+.+++|++.|..++++..+ ...+- ++.....  +...  ......+.++.|-.+..++++
T Consensus       161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~-~~q~k~~i~~~~~--~~~p--~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG-EMEKQFEFSLPSE--LEEL--PVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             EESEEEEEECSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCHH--HHTS--CTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCcceEEecCCceEEEEeCCcEEEEEeCCC-ceeeccCCCCccc--cCCC--cCCCcceeEEEEecCceEEEE
Confidence            21   11223567777777777777666432 12211 1111000  0000  123456889999866555543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.23  E-value=1.8  Score=33.08  Aligned_cols=215  Identities=11%  Similarity=0.076  Sum_probs=128.3

Q ss_pred             CeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEECCCCC
Q 016982           32 NEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKEN  111 (379)
Q Consensus        32 g~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (379)
                      ..|.|.|+.+..-...+.+.+     .+.-.+|..+.|+.-+ ..++.++|+++.+....+.+   ..+|.-=.|-.+ +
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~A-----dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~---~e~VvfWkWis~-~  114 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISA-----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISL-N  114 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCC-----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEESSS-S
T ss_pred             ceEEEEECCCCCcceecccch-----hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc---CCCcEEEEecCC-C
Confidence            478888887653222222222     2344678888877665 56899999999986665543   567777777644 4


Q ss_pred             EEEEEeCCCeEEEEEeecCCceeEEEEEeecC----CcCEEEEEEcCCCcEEEEeeC-------CCeEEEEecccccccc
Q 016982          112 KFAVGSGAKTVCICYYEQENNWWVSKLIRKRH----DSSVTSVAWHPNNVFLATTST-------DGKCRVFSTFIKGVDI  180 (379)
Q Consensus       112 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~~~~~-------d~~i~v~d~~~~~~~~  180 (379)
                      .|+..+ +..|+-|+++....  ..+.+ ..|    ...|..-..+++.++++..+-       .|.+.+|..       
T Consensus       115 ~L~lVT-~taVYHW~~~g~s~--P~k~f-dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~-------  183 (327)
T d1utca2         115 TVALVT-DNAVYHWSMEGESQ--PVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV-------  183 (327)
T ss_dssp             EEEEEC-SSEEEEEESSSSCC--CEEEE-ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET-------
T ss_pred             EEEEEc-CCceEEEcccCCCC--chhhh-hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEe-------
Confidence            555555 46799999965432  24444 333    346777778888888875442       467888874       


Q ss_pred             ccccCCCccCCcccceEEEeecCCcceEEEEECCCC---CEEEEE---cCCCeEEEEECCCCCc---e--eee--eee--
Q 016982          181 KEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSG---NTLAYV---GHNSMIYFVDDVGPSP---L--AQN--VAF--  245 (379)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~l~~~---~~d~~i~v~d~~~~~~---~--~~~--~~~--  245 (379)
                                  ..+..+.+++|......+.+.-+.   ..++.+   ...+.+++.++.....   .  .+.  +..  
T Consensus       184 ------------er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fpp  251 (327)
T d1utca2         184 ------------DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  251 (327)
T ss_dssp             ------------TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred             ------------ccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCc
Confidence                        345556677876665555443221   233333   2346899999865321   1  011  111  


Q ss_pred             --ecCCeeeEEEecCCc-EEEEEeCCCeEEEEecCCC
Q 016982          246 --RDLPLRDVLFVSEKM-VIGVGFDCNPMVFAADETG  279 (379)
Q Consensus       246 --~~~~i~~~~~s~~~~-~l~~~~d~~~~i~~~~~~~  279 (379)
                        .+.-.-++..|+.-. ..+...-|.+++|+.....
T Consensus       252 ea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         252 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             cccCCcEEEEEeeccCCEEEEEecCcEEEEEEccccc
Confidence              122244666676443 3446777788888876554

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.46  E-value=3.6  Score=34.89  Aligned_cols=48  Identities=8%  Similarity=-0.017  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCCeEEEEECCCCCceeeeeeeec-CCeeeEEEecCCc-EEE
Q 016982          215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRD-LPLRDVLFVSEKM-VIG  263 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~~~-~l~  263 (379)
                      .+.+++.++.||.++.+|..+++.+ -...... ..-.-+.+..+|+ ||+
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~L-W~~~l~~~~~~~P~ty~~dGkqyv~  517 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEAL-WQFEAQSGIVAAPMTFELAGRQYVA  517 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEe-EEEECCCCccccCEEEEECCEEEEE
Confidence            4667888999999999999999865 4433211 1112256667885 555

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.18  E-value=1.9  Score=31.07  Aligned_cols=142  Identities=14%  Similarity=0.174  Sum_probs=78.6

Q ss_pred             ceeEEEeCCCCcEEEEEecCCeEEEEEecCCceEEEEEeccCC-------CceEEEEEc-CCCCEEEEEeC-CCeEEEEe
Q 016982           12 CITCHAWSPDHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHD-------QIVSGIDWS-VRSNRIVTVSH-DRNSYVWN   82 (379)
Q Consensus        12 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-------~~v~~~~~~-~~~~~l~~~~~-d~~i~vw~   82 (379)
                      .|.+++.. +.+..++|+......+|-++.++.+.+..+++..       +.|..+.+. +..+-++++.. .|.+++++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            35555553 4456778888889999999999877777776532       223333322 11122333333 45555554


Q ss_pred             ccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeC-CCeEE--EEEeecCCceeEEEEEe-------ecCCcCEEEEEE
Q 016982           83 QEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSG-AKTVC--ICYYEQENNWWVSKLIR-------KRHDSSVTSVAW  152 (379)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~--i~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~  152 (379)
                      ...             +.++...+.+..+. ++.-+ -|.-+  -+|++.+.    ...+.       .-..-.|.-+-+
T Consensus       184 pke-------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~----yerve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         184 SGE-------------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS----VEDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             CSS-------------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC----EEECCCSSCHHHHHCCSEEEEEEE
T ss_pred             CCC-------------CcccceeEccCcee-eeccCCCCceEEEEEecccCc----eeeeecCcccceeecceEEEeeee
Confidence            443             34444455554433 33322 12211  22444333    11110       112335666779


Q ss_pred             cCCCcEEEEeeCCCeEEEEe
Q 016982          153 HPNNVFLATTSTDGKCRVFS  172 (379)
Q Consensus       153 ~p~~~~l~~~~~d~~i~v~d  172 (379)
                      .|++++++.+-.||.-++|.
T Consensus       246 ~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         246 LPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CTTSCEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEecCCchheee
Confidence            99999989999999999996

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=2.4  Score=31.98  Aligned_cols=66  Identities=9%  Similarity=0.138  Sum_probs=33.6

Q ss_pred             CCcEEEEEec---------CCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEeccCC
Q 016982           21 DHAMVAFCPN---------NNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRSNRIVTVSHDR-----NSYVWNQEGS   86 (379)
Q Consensus        21 ~~~~l~~~~~---------dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~   86 (379)
                      ++++++.|+.         -..+.+||..+.++..+..+......-.++.+  +++.++.++.++     ....++..+.
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~  127 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  127 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc--ceeeEEecceecccccceeeeeccccC
Confidence            4566666653         23677888888766655443322222222222  454555444332     2455676666


Q ss_pred             ce
Q 016982           87 EW   88 (379)
Q Consensus        87 ~~   88 (379)
                      .+
T Consensus       128 ~~  129 (288)
T d1zgka1         128 EW  129 (288)
T ss_dssp             EE
T ss_pred             cc
Confidence            53

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.72  E-value=3.5  Score=33.49  Aligned_cols=102  Identities=8%  Similarity=0.113  Sum_probs=63.0

Q ss_pred             ceEEEEEcCCCCEEEEE-eCCC----eEEEEeccCCceeeeEEeecCCCceeEEEECCCCCEEEEEeCC-----------
Q 016982           56 IVSGIDWSVRSNRIVTV-SHDR----NSYVWNQEGSEWVPTLVILRLNRAALCVQWSPKENKFAVGSGA-----------  119 (379)
Q Consensus        56 ~v~~~~~~~~~~~l~~~-~~d~----~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------  119 (379)
                      .+....+||++++++.+ +.+|    .++++|+.+++.+.... .  ......+.|.+|++.|+....+           
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-E--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-E--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-c--cccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            45567889999988754 3333    59999999998655331 1  1223578999999988765432           


Q ss_pred             -----CeEEEEEeecCCceeEEEEEeecC--CcCEEEEEEcCCCcEEEEe
Q 016982          120 -----KTVCICYYEQENNWWVSKLIRKRH--DSSVTSVAWHPNNVFLATT  162 (379)
Q Consensus       120 -----~~v~i~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~  162 (379)
                           ..|..+.+.+....  ...+....  ...+..+..++++++++..
T Consensus       203 ~~~~~~~v~~h~lgt~~~~--d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSE--DILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGG--CEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             ccCCcceEEEEECCCCccc--cccccccccCCceEEeeeccCCcceeeEE
Confidence                 24666666554321  11221222  2346677888899887643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.17  E-value=4.8  Score=34.18  Aligned_cols=47  Identities=6%  Similarity=0.015  Sum_probs=32.3

Q ss_pred             CCCEEEEEcCCCeEEEEECCCCCceeeeeeeecCCee--eEEEecCCc-EEE
Q 016982          215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFRDLPLR--DVLFVSEKM-VIG  263 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~i~--~~~~s~~~~-~l~  263 (379)
                      .|.+|++++.||.++.+|..+++.+ -.+... ..+.  -+.|..+|+ ||+
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~L-W~~~~~-~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKL-WEAPTG-TGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE-EEEECS-SCCCSCCEEEEETTEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEe-EEEECC-CCccccCEEEEECCEEEEE
Confidence            5778888999999999999999865 444322 1221  256667886 555

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.26  E-value=5.9  Score=33.84  Aligned_cols=48  Identities=8%  Similarity=0.035  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCCeEEEEECCCCCceeeeeeee-cCCeeeEEEecCCc-EEE
Q 016982          215 SGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR-DLPLRDVLFVSEKM-VIG  263 (379)
Q Consensus       215 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~~~-~l~  263 (379)
                      .|.+++.|+.||.++.+|..+++.+ -.+... ...-.-+.|..+|+ ||+
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~L-W~~~~~~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLL-WKFKIPSGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEe-eEEECCCCcccCCeEEEECCEEEEE
Confidence            4678888999999999999999865 443321 11122255666775 555

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.75  E-value=6.3  Score=33.52  Aligned_cols=49  Identities=10%  Similarity=0.071  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCCCeEEEEECCCCCceeeeeeee-cCCeeeEEEecCCc-EEE
Q 016982          214 PSGNTLAYVGHNSMIYFVDDVGPSPLAQNVAFR-DLPLRDVLFVSEKM-VIG  263 (379)
Q Consensus       214 p~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~~~-~l~  263 (379)
                      ..+.++++++.||.++.+|..+++.+ -.+... ...-.-+.|..+|+ ||+
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~L-W~~~~~~~~~~~P~ty~~~G~qYv~  545 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKEL-WKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEe-EEEECCCCccccCEEEEECCEEEEE
Confidence            45778888999999999999999865 444322 11122267778885 555

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=88.25  E-value=4.8  Score=31.61  Aligned_cols=195  Identities=10%  Similarity=0.093  Sum_probs=105.0

Q ss_pred             CCCCEEEEEeCCCeEEEEeccCCceeeeEEeecCCCceeEEEEC------CCCCEEEEEeC--C--CeEEEEEeecCCce
Q 016982           64 VRSNRIVTVSHDRNSYVWNQEGSEWVPTLVILRLNRAALCVQWS------PKENKFAVGSG--A--KTVCICYYEQENNW  133 (379)
Q Consensus        64 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~~--d--~~v~i~~~~~~~~~  133 (379)
                      |+..+++.....+-|.+||++..+ +..+    ..+.+..+..-      ....-+++++.  +  ..|.+|.+..... 
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~-l~~~----~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~-  111 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKM-LHSY----HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-  111 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCE-EEEC----CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT-
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcE-EEec----ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc-
Confidence            344677776777679999997443 3322    23455544433      22223555553  2  3677888764432 


Q ss_pred             eEEEEEe------ecCCcCEEEEEE--cCC-Cc-EEEEeeCCCeEEEEeccccccccccccCCCccCCcccceEEEeecC
Q 016982          134 WVSKLIR------KRHDSSVTSVAW--HPN-NV-FLATTSTDGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLS  203 (379)
Q Consensus       134 ~~~~~~~------~~~~~~v~~~~~--~p~-~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (379)
                       ....+.      ..-...++.+|+  +|. +. ++++...+|.+..|.+....     ..      .-..+.++.+.. 
T Consensus       112 -~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~-----~g------~v~~~lvr~f~~-  178 (353)
T d1h6la_         112 -TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADK-----NG------YISGKKVRAFKM-  178 (353)
T ss_dssp             -EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT-----TS------SEEEEEEEEEEC-
T ss_pred             -ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCC-----CC------ceeeEeeeccCC-
Confidence             122220      011224666766  554 43 45666678999888762100     00      012345556654 


Q ss_pred             CcceEEEEECCCCCEEEEEcCCCeEEEEECCCC----Cceeeeeee--ecCCeeeEEEec--CCc-EEEEE--eCCCeEE
Q 016982          204 FSWAFGVKWSPSGNTLAYVGHNSMIYFVDDVGP----SPLAQNVAF--RDLPLRDVLFVS--EKM-VIGVG--FDCNPMV  272 (379)
Q Consensus       204 ~~~v~~~~~sp~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~--~~~~i~~~~~s~--~~~-~l~~~--~d~~~~i  272 (379)
                      ...+-.+.+.+....|+.+-++..+..++....    ..++....+  ....+-.++.-.  ++. +|+++  .+++..+
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~v  258 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAI  258 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEE
Confidence            446888999999889999888887777765422    111111111  134566676543  332 55443  3445667


Q ss_pred             EEecC
Q 016982          273 FAADE  277 (379)
Q Consensus       273 ~~~~~  277 (379)
                      |+...
T Consensus       259 ydr~~  263 (353)
T d1h6la_         259 YERQG  263 (353)
T ss_dssp             EESST
T ss_pred             EecCC
Confidence            76543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.72  E-value=7.2  Score=27.98  Aligned_cols=212  Identities=14%  Similarity=0.095  Sum_probs=108.2

Q ss_pred             CCcEEEEEecCCeEEEEEecCCceEEEEEeccCCCceEEEEEcCCC--CEEEEEe------CCCeEEEEeccCCceeeeE
Q 016982           21 DHAMVAFCPNNNEVHIYKLIQEKWEKLHVLQKHDQIVSGIDWSVRS--NRIVTVS------HDRNSYVWNQEGSEWVPTL   92 (379)
Q Consensus        21 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~------~d~~i~vw~~~~~~~~~~~   92 (379)
                      +.++++++...|.+.++-+..++...   +.  ..+|.... .|..  .++..+-      .-..|.+-++....  ..+
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vk---Lt--kePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G--EE~   96 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVK---LN--REPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG--EEQ   96 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEE---CC--SSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTT--CEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEE---Ee--cccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCC--eee
Confidence            44578888788999999988773222   22  22332221 1211  2332221      12235555555221  122


Q ss_pred             EeecCC-CceeEEEECCCCCEEEEEeCCCeEEEEEeecCCceeEEEEEeecCCcCEEEE--------EEc-CCCcEEEEe
Q 016982           93 VILRLN-RAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHDSSVTSV--------AWH-PNNVFLATT  162 (379)
Q Consensus        93 ~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~-p~~~~l~~~  162 (379)
                      .+.... -.|.++++. +.+..++|+......+|-++.++   +.+.......+-|+++        .+- +..+-+.++
T Consensus        97 ~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGk---lrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~a  172 (313)
T d2hu7a1          97 RLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGG---LRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS  172 (313)
T ss_dssp             ECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTE---EEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             EecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCc---eeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEE
Confidence            222222 355666654 45677888888888899898887   3333222333344443        221 111223333


Q ss_pred             eC-CCeEEEEeccccccccccccCCCccCCcccceEEEeecCCcceEEEEECCCCCEEEEEc---CCCeEEEEECCCCCc
Q 016982          163 ST-DGKCRVFSTFIKGVDIKEKKEGTSSDTKFGEQILQLDLSFSWAFGVKWSPSGNTLAYVG---HNSMIYFVDDVGPSP  238 (379)
Q Consensus       163 ~~-d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~i~v~d~~~~~~  238 (379)
                      .- .|.+++++                             ...+.++.....+..+. ++.-   ......-+|++.++-
T Consensus       173 dl~SG~lri~t-----------------------------pkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~y  222 (313)
T d2hu7a1         173 NLSSGGLRVFD-----------------------------SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSV  222 (313)
T ss_dssp             ETTTEEEEEEC-----------------------------CSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCE
T ss_pred             ecccCCEEEec-----------------------------CCCCcccceeEccCcee-eeccCCCCceEEEEEecccCce
Confidence            32 44455544                             34566777777776665 3322   122223457776542


Q ss_pred             eeeeeee------ecCCeeeEEEecCCcE-EEEEeCCCeEEEE
Q 016982          239 LAQNVAF------RDLPLRDVLFVSEKMV-IGVGFDCNPMVFA  274 (379)
Q Consensus       239 ~~~~~~~------~~~~i~~~~~s~~~~~-l~~~~d~~~~i~~  274 (379)
                      ..-.+..      ..-.|+-+-+.|++++ +++-.||.-.+|.
T Consensus       223 erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         223 EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             EECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             eeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            1111111      1123444558899998 5577888888876