Citrus Sinensis ID: 017032

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MAECMRTTLNPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccEEEEEEEEEEEccccccHHHHHHHcccccEEcccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEccccccccccccccccHHHHccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHcc
ccHHHHHHcccccccccHcccccccccccccccccccccccccccccccccEccccccccHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEcccEEEEEcccEEEEEEccHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHccccEEccccccEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHccccEcccccccccccccccccccccccccccHccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEcccccccEEEcccccccccEEEEEcccccHHHccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHcc
maecmrttlnppktplhsnkisapklsfsssfssfgtkpnssnsnnyprisLSVMSnknqnqnqnqnhhhhqqhLSLDAVISSNRKAELLGDIKGSLSNrlsetnlhltvpglksktrgkvrdiydggdYLVLVTTDRQSAFDRILasipfkgqvlnetslwwfdqtrhitpnavisspdknvtiakkcsvipvEFVVRGFvtgstdtslWTVYNKGIRnycgnalpdglvknqklpaniltpttkaedhdvpvtpdEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDtkyefgkssddsillidevhtpdssryWIAHSYEErfqsglepenvdKEFLRLWFKdhcnpyedevlpdapeELICELAWR
maecmrttlnppktplhsnkISAPKLSFSSSFSSfgtkpnssnsnnYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSlsnrlsetnlhltvpglksktrgkvrdiydGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHItpnavisspdkNVTIAKKCSVIPVEFVvrgfvtgstdtslWTVYNKGIRNYCGNALPDGLVKNQKLPANILTpttkaedhdvpvTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEErfqsglepENVDKEFLRLWFKDHCNPyedevlpdapEELICELAWR
MAECMRTTLNPPKTPLHSNKISAPKLsfsssfssfGTKPNSSNSNNYPRISLSVMSNKnqnqnqnqnhhhhqqhLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR
*********************************************************************************************************LHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPT******DVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELA**
*********NP*********************************************************************************IKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYE**********NVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAW*
MAECMRTTLNPPKTPLHSNKISAPKLSFSS*************SNNYPRISLSVMSNKN****************SLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR
***CMRTTLNP*KT*L****I*APKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHH***HLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAW*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAECMRTTLNPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
P38025411 Phosphoribosylaminoimidaz yes no 0.981 0.902 0.714 1e-158
Q07463341 Phosphoribosylaminoimidaz N/A no 0.796 0.882 0.795 1e-142
Q5WW20312 Phosphoribosylaminoimidaz yes no 0.722 0.875 0.629 1e-104
Q5X4M9312 Phosphoribosylaminoimidaz yes no 0.722 0.875 0.622 1e-103
Q9A3G2320 Putative phosphoribosylam yes no 0.698 0.825 0.529 3e-78
Q8UCE7316 Putative phosphoribosylam yes no 0.701 0.838 0.516 2e-77
Q98I23313 Putative phosphoribosylam yes no 0.693 0.837 0.492 3e-72
Q7MVR8313 Phosphoribosylaminoimidaz yes no 0.658 0.795 0.474 5e-61
Q8A004314 Phosphoribosylaminoimidaz yes no 0.653 0.786 0.464 5e-60
Q64XV7314 Phosphoribosylaminoimidaz yes no 0.653 0.786 0.464 1e-59
>sp|P38025|PUR7_ARATH Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2 Back     alignment and function desciption
 Score =  558 bits (1438), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/378 (71%), Positives = 311/378 (82%), Gaps = 7/378 (1%)

Query: 1   MAECMRTTLNPPKTPLHSNKISAPKLSFSSSFSSFGTKPNSSNSNNYPRISLSVMSNKNQ 60
           MA+C+R+TLNP +TP    + +  K   S +F+S          N YP+    VMS + +
Sbjct: 1   MAQCVRSTLNPVRTPQSFTRKAYVK---SPAFASVSFLRAVPEFNKYPKPCSLVMSCQGK 57

Query: 61  NQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGK 120
            QNQ +     +  LSLD +++SNRK E+LG IK SLSN LSETNL  TVPGLKS+ +GK
Sbjct: 58  AQNQQE----ERPQLSLDDLVTSNRKGEVLGTIKDSLSNCLSETNLLATVPGLKSRIKGK 113

Query: 121 VRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPD 180
           VRDIYD GDYLVL+TTDR SAFDR LASIPFKGQVLNETSLWWF+ T+HITPNA++SSPD
Sbjct: 114 VRDIYDAGDYLVLITTDRLSAFDRNLASIPFKGQVLNETSLWWFNNTQHITPNAIVSSPD 173

Query: 181 KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANI 240
           +NV IAKKCSV P+EFVVRG+VTGSTDTSLWTVYNKG+RNYCGN L DGLVKNQKLPANI
Sbjct: 174 RNVVIAKKCSVFPIEFVVRGYVTGSTDTSLWTVYNKGVRNYCGNELSDGLVKNQKLPANI 233

Query: 241 LTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKY 300
           LTPTTKA DHDVP++P+EIV+ G MT+AEFDEAS KAL LFE+GQ VA +HGLILVDTKY
Sbjct: 234 LTPTTKAADHDVPISPNEIVEGGFMTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKY 293

Query: 301 EFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYE 360
           EFG+SSD SILLIDE+HTPDSSRYW+A SYEERFQ GLEPENVDKEFLRLWFK++CNPYE
Sbjct: 294 EFGRSSDGSILLIDEIHTPDSSRYWLAGSYEERFQKGLEPENVDKEFLRLWFKENCNPYE 353

Query: 361 DEVLPDAPEELICELAWR 378
           DEVLP AP EL+ ELAWR
Sbjct: 354 DEVLPAAPAELVTELAWR 371

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 6
>sp|Q07463|PUR7_VIGAC Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PUR7 PE=2 SV=1 Back     alignment and function description
>sp|Q5WW20|PUR7_LEGPL Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Legionella pneumophila (strain Lens) GN=purC PE=3 SV=1 Back     alignment and function description
>sp|Q5X4M9|PUR7_LEGPA Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Legionella pneumophila (strain Paris) GN=purC PE=3 SV=1 Back     alignment and function description
>sp|Q9A3G2|PUR72_CAUCR Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=purC2 PE=3 SV=1 Back     alignment and function description
>sp|Q8UCE7|PUR72_AGRT5 Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=purC2 PE=3 SV=1 Back     alignment and function description
>sp|Q98I23|PUR72_RHILO Putative phosphoribosylaminoimidazole-succinocarboxamide synthase 2 OS=Rhizobium loti (strain MAFF303099) GN=purC2 PE=3 SV=2 Back     alignment and function description
>sp|Q7MVR8|PUR7_PORGI Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=purC PE=3 SV=1 Back     alignment and function description
>sp|Q8A004|PUR7_BACTN Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=purC PE=3 SV=1 Back     alignment and function description
>sp|Q64XV7|PUR7_BACFR Phosphoribosylaminoimidazole-succinocarboxamide synthase OS=Bacteroides fragilis (strain YCH46) GN=purC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
255545878324 purine biosynthesis protein 7, pur7, put 0.817 0.953 0.864 1e-161
297835076411 hypothetical protein ARALYDRAFT_898545 [ 0.981 0.902 0.719 1e-156
15232462411 phosphoribosylaminoimidazole-succinocarb 0.981 0.902 0.714 1e-156
453384411 SAICAR synthetase [Arabidopsis thaliana] 0.981 0.902 0.708 1e-155
225459162388 PREDICTED: phosphoribosylaminoimidazole- 0.796 0.775 0.847 1e-155
37983622399 SAICAR synthetase [Nicotiana tabacum] 0.928 0.879 0.726 1e-153
449469821404 PREDICTED: phosphoribosylaminoimidazole- 0.957 0.896 0.722 1e-151
19347902374 putative phosphoribosyamidoimidazole-suc 0.873 0.882 0.766 1e-150
449515490366 PREDICTED: phosphoribosylaminoimidazole- 0.822 0.849 0.814 1e-150
357489863399 Phosphoribosylaminoimidazole-succinocarb 0.941 0.892 0.694 1e-150
>gi|255545878|ref|XP_002513999.1| purine biosynthesis protein 7, pur7, putative [Ricinus communis] gi|223547085|gb|EEF48582.1| purine biosynthesis protein 7, pur7, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/309 (86%), Positives = 289/309 (93%)

Query: 70  HHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGD 129
            +QQ LSLD++I+S+RK E+ G IKGSLSN LSETNLHLTVPGLKSKTRGKVRDIYDGGD
Sbjct: 4   QNQQKLSLDSLINSSRKDEVFGAIKGSLSNCLSETNLHLTVPGLKSKTRGKVRDIYDGGD 63

Query: 130 YLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKC 189
           YLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQT+H+T NAV+S+PDKNVTIAKKC
Sbjct: 64  YLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTQHLTQNAVVSAPDKNVTIAKKC 123

Query: 190 SVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAED 249
           SV PVEFVVRG+VTGSTDTSLWTVY KG+RNYCGNALPDGLVKNQKL  NILTPTTKA D
Sbjct: 124 SVFPVEFVVRGYVTGSTDTSLWTVYKKGVRNYCGNALPDGLVKNQKLATNILTPTTKAAD 183

Query: 250 HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDS 309
           HDVPVTP EI++ GLMT A++DEASRKAL+LFEYGQRVA EHGL+LVDTKYEFGK +D S
Sbjct: 184 HDVPVTPSEIIERGLMTRADYDEASRKALKLFEYGQRVALEHGLVLVDTKYEFGKGADGS 243

Query: 310 ILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPE 369
           +LLIDEVHTPDSSRYWI HSYEERFQ GLEPEN+DKEFLRLWFKDHCNPYEDEVLPDAPE
Sbjct: 244 VLLIDEVHTPDSSRYWIGHSYEERFQKGLEPENIDKEFLRLWFKDHCNPYEDEVLPDAPE 303

Query: 370 ELICELAWR 378
           EL+CELAWR
Sbjct: 304 ELVCELAWR 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297835076|ref|XP_002885420.1| hypothetical protein ARALYDRAFT_898545 [Arabidopsis lyrata subsp. lyrata] gi|297331260|gb|EFH61679.1| hypothetical protein ARALYDRAFT_898545 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15232462|ref|NP_188748.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] gi|79313319|ref|NP_001030739.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] gi|26454658|sp|P38025.2|PUR7_ARATH RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic; AltName: Full=SAICAR synthetase; Flags: Precursor gi|11994271|dbj|BAB01454.1| 5'-phosphoribosyl-4-(N-succinocarboxamide)-5- ami noimidazole synthetase [Arabidopsis thaliana] gi|27754219|gb|AAO22563.1| putative phosphoribosyamidoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] gi|332642941|gb|AEE76462.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] gi|332642942|gb|AEE76463.1| phosphoribosylaminoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|453384|gb|AAA16231.1| SAICAR synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225459162|ref|XP_002285714.1| PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Vitis vinifera] gi|302142022|emb|CBI19225.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|37983622|gb|AAR06292.1| SAICAR synthetase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449469821|ref|XP_004152617.1| PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|19347902|gb|AAL85973.1| putative phosphoribosyamidoimidazole-succinocarboxamide synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449515490|ref|XP_004164782.1| PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357489863|ref|XP_003615219.1| Phosphoribosylaminoimidazole-succinocarboxamide synthase [Medicago truncatula] gi|355516554|gb|AES98177.1| Phosphoribosylaminoimidazole-succinocarboxamide synthase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
TAIR|locus:2092975411 PUR7 "purin 7" [Arabidopsis th 0.981 0.902 0.701 3.5e-139
TIGR_CMR|GSU_2091296 GSU_2091 "phosphoribosylaminoi 0.682 0.871 0.381 2.1e-38
POMBASE|SPBC409.10299 ade7 "phosphoribosylamidoimida 0.664 0.839 0.350 4.6e-34
SGD|S000000070306 ADE1 "N-succinyl-5-aminoimidaz 0.423 0.522 0.371 4.9e-33
UNIPROTKB|G4NKV5310 MGG_12537 "Phosphoribosylamino 0.661 0.806 0.354 4.7e-32
UNIPROTKB|P0A5T4297 purC "Phosphoribosylaminoimida 0.642 0.818 0.350 3.3e-31
CGD|CAL0005704291 ADE1 [Candida albicans (taxid: 0.619 0.804 0.365 4.2e-31
UNIPROTKB|Q5AAK5291 ADE1 "Phosphoribosylaminoimida 0.619 0.804 0.365 4.2e-31
UNIPROTKB|Q2KF88 1410 MGCH7_ch7g798 "Putative unchar 0.661 0.177 0.354 1.3e-30
ASPGD|ASPL0000074717300 AN4739 [Emericella nidulans (t 0.637 0.803 0.339 9.1e-29
TAIR|locus:2092975 PUR7 "purin 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1362 (484.5 bits), Expect = 3.5e-139, P = 3.5e-139
 Identities = 265/378 (70%), Positives = 301/378 (79%)

Query:     1 MAECMRTTLNPPKTPLHSNKISAPKLXXXXXXXXXGTKPNSSNSNNYPRISLSVMSNKXX 60
             MA+C+R+TLNP +TP    + +  K             P     N YP+    VMS +  
Sbjct:     1 MAQCVRSTLNPVRTPQSFTRKAYVKSPAFASVSFLRAVPEF---NKYPKPCSLVMSCQGK 57

Query:    61 XXXXXXXXXXXXXXLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGK 120
                           LSLD +++SNRK E+LG IK SLSN LSETNL  TVPGLKS+ +GK
Sbjct:    58 AQNQQEERPQ----LSLDDLVTSNRKGEVLGTIKDSLSNCLSETNLLATVPGLKSRIKGK 113

Query:   121 VRDIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPD 180
             VRDIYD GDYLVL+TTDR SAFDR LASIPFKGQVLNETSLWWF+ T+HITPNA++SSPD
Sbjct:   114 VRDIYDAGDYLVLITTDRLSAFDRNLASIPFKGQVLNETSLWWFNNTQHITPNAIVSSPD 173

Query:   181 KNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANI 240
             +NV IAKKCSV P+EFVVRG+VTGSTDTSLWTVYNKG+RNYCGN L DGLVKNQKLPANI
Sbjct:   174 RNVVIAKKCSVFPIEFVVRGYVTGSTDTSLWTVYNKGVRNYCGNELSDGLVKNQKLPANI 233

Query:   241 LTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKY 300
             LTPTTKA DHDVP++P+EIV+ G MT+AEFDEAS KAL LFE+GQ VA +HGLILVDTKY
Sbjct:   234 LTPTTKAADHDVPISPNEIVEGGFMTQAEFDEASMKALSLFEFGQGVAKKHGLILVDTKY 293

Query:   301 EFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYE 360
             EFG+SSD SILLIDE+HTPDSSRYW+A SYEERFQ GLEPENVDKEFLRLWFK++CNPYE
Sbjct:   294 EFGRSSDGSILLIDEIHTPDSSRYWLAGSYEERFQKGLEPENVDKEFLRLWFKENCNPYE 353

Query:   361 DEVLPDAPEELICELAWR 378
             DEVLP AP EL+ ELAWR
Sbjct:   354 DEVLPAAPAELVTELAWR 371
GO:0004639 "phosphoribosylaminoimidazolesuccinocarboxamide synthase activity" evidence=IEA;IGI;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA;IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016874 "ligase activity" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=IDA
TIGR_CMR|GSU_2091 GSU_2091 "phosphoribosylaminoimidazole-succinocarboxamide synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
POMBASE|SPBC409.10 ade7 "phosphoribosylamidoimidazolesuccinocarboxamide synthase, SAICAR synthetase, Ade7" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000000070 ADE1 "N-succinyl-5-aminoimidazole-4-carboxamide ribotide (SAICAR) synthetas" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|G4NKV5 MGG_12537 "Phosphoribosylaminoimidazole-succinocarboxamide synthase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|P0A5T4 purC "Phosphoribosylaminoimidazole-succinocarboxamide synthase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
CGD|CAL0005704 ADE1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AAK5 ADE1 "Phosphoribosylaminoimidazole-succinocarboxamide synthase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KF88 MGCH7_ch7g798 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000074717 AN4739 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5WW20PUR7_LEGPL6, ., 3, ., 2, ., 60.62940.72220.875yesno
Q07463PUR7_VIGAC6, ., 3, ., 2, ., 60.79530.79620.8826N/Ano
Q5X4M9PUR7_LEGPA6, ., 3, ., 2, ., 60.62230.72220.875yesno
Q9A3G2PUR72_CAUCR6, ., 3, ., 2, ., 60.52980.69840.825yesno
P38025PUR7_ARATH6, ., 3, ., 2, ., 60.71420.98140.9026yesno
Q8UCE7PUR72_AGRT56, ., 3, ., 2, ., 60.51670.70100.8386yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2.60.991
3rd Layer6.3.20.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_302515.1
annotation not avaliable (411 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.1__1041__AT1G09830.1
annotation not avaliable (530 aa)
•• • •• 0.990
fgenesh1_pm.C_scaffold_4001534
annotation not avaliable (645 aa)
•  • •• 0.933
fgenesh1_pm.C_scaffold_5001575
annotation not avaliable (388 aa)
•  •  • 0.899
fgenesh2_kg.4__1530__AT2G35040.1
annotation not avaliable (598 aa)
•  •  • 0.898
scaffold_700081.1
annotation not avaliable (533 aa)
•  • •• 0.841
scaffold_200152.1
annotation not avaliable (534 aa)
•  •  • 0.841
fgenesh2_kg.3__3245__AT2G16570.1
annotation not avaliable (563 aa)
•  • •• 0.841
fgenesh2_kg.5__2202__AT3G57610.1
annotation not avaliable (490 aa)
•  •  • 0.832
fgenesh2_kg.1__3566__AT1G31220.1
annotation not avaliable (292 aa)
•    •• 0.816
fgenesh2_kg.2__1314__AT1G31220.1
annotation not avaliable (295 aa)
•    •• 0.788

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
PLN02544370 PLN02544, PLN02544, phosphoribosylaminoimidazole-s 0.0
PRK12607313 PRK12607, PRK12607, phosphoribosylaminoimidazole-s 1e-149
cd01414279 cd01414, SAICAR_synt_Sc, non-metazoan 5-aminoimida 1e-121
pfam01259243 pfam01259, SAICAR_synt, SAICAR synthetase 3e-82
PRK13961296 PRK13961, PRK13961, phosphoribosylaminoimidazole-s 4e-79
COG0152247 COG0152, PurC, Phosphoribosylaminoimidazolesuccino 6e-62
TIGR00081237 TIGR00081, purC, phosphoribosylaminoimidazole-succ 2e-37
TIGR02735365 TIGR02735, purC_vibrio, phosphoribosylaminoimidazo 2e-33
PRK13960367 PRK13960, PRK13960, phosphoribosylaminoimidazole-s 3e-31
cd00476230 cd00476, SAICAR_synt, 5-aminoimidazole-4-(N-succin 8e-30
cd01415230 cd01415, SAICAR_synt_PurC, bacterial and archaeal 2e-23
PRK09362238 PRK09362, PRK09362, phosphoribosylaminoimidazole-s 3e-20
cd01416252 cd01416, SAICAR_synt_Ade5, Ade5_like 5-aminoimidaz 8e-14
PRK13959341 PRK13959, PRK13959, phosphoribosylaminoimidazole-s 7e-13
>gnl|CDD|178159 PLN02544, PLN02544, phosphoribosylaminoimidazole-succinocarboxamide synthase Back     alignment and domain information 
 Score =  607 bits (1566), Expect = 0.0
 Identities = 237/307 (77%), Positives = 273/307 (88%)

Query: 72  QQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVRDIYDGGDYL 131
              LSLD + SS R+ E+LG IK +LSN L+ETNL LTVPGL S+ RGKVRDIYD GDYL
Sbjct: 34  SPALSLDDLSSSGRRPEVLGAIKEALSNCLTETNLDLTVPGLGSRRRGKVRDIYDLGDYL 93

Query: 132 VLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSV 191
           VLVTTDRQSAFDR+LASIPFKGQVLN+TS WWF+ T+HITPNA++SSPD NVTIAKKCSV
Sbjct: 94  VLVTTDRQSAFDRVLASIPFKGQVLNQTSAWWFNNTKHITPNALVSSPDPNVTIAKKCSV 153

Query: 192 IPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHD 251
            PVEFVVRG++TGST TSLWTVYNKG+RNYCGN LPDG+VKNQKLPANILTPTTKA DHD
Sbjct: 154 FPVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHD 213

Query: 252 VPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSIL 311
           VP++P+EIV+ GLMT+ +FDE S KAL LF +GQ VA+EHGLILVDTKYEFGK +D +IL
Sbjct: 214 VPISPEEIVEEGLMTQEDFDEVSSKALALFAFGQEVAAEHGLILVDTKYEFGKDADGTIL 273

Query: 312 LIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEEL 371
           LIDEVHTPDSSRYW+A SYEER  +GLEPEN+DKEFLRLWFK++C+PY+DEVLP+AP EL
Sbjct: 274 LIDEVHTPDSSRYWLADSYEERHAAGLEPENIDKEFLRLWFKENCDPYKDEVLPEAPAEL 333

Query: 372 ICELAWR 378
           +CEL+WR
Sbjct: 334 VCELSWR 340

Length = 370
>gnl|CDD|183621 PRK12607, PRK12607, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>gnl|CDD|133469 cd01414, SAICAR_synt_Sc, non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>gnl|CDD|216394 pfam01259, SAICAR_synt, SAICAR synthetase Back     alignment and domain information
>gnl|CDD|237571 PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>gnl|CDD|223230 COG0152, PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|232817 TIGR00081, purC, phosphoribosylaminoimidazole-succinocarboxamide synthase Back     alignment and domain information
>gnl|CDD|131782 TIGR02735, purC_vibrio, phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type Back     alignment and domain information
>gnl|CDD|184420 PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>gnl|CDD|133468 cd00476, SAICAR_synt, 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>gnl|CDD|133470 cd01415, SAICAR_synt_PurC, bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed Back     alignment and domain information
>gnl|CDD|133471 cd01416, SAICAR_synt_Ade5, Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>gnl|CDD|237570 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
PLN02544370 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
PRK12607313 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
PRK13961296 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
cd01414279 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N- 100.0
PRK13960367 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
TIGR02735365 purC_vibrio phosphoribosylaminoimidazole-succinoca 100.0
PRK13959341 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
cd01415230 SAICAR_synt_PurC bacterial and archaeal 5-aminoimi 100.0
PRK09362238 phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
cd01416252 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-s 100.0
COG0152247 PurC Phosphoribosylaminoimidazolesuccinocarboxamid 100.0
PF01259248 SAICAR_synt: SAICAR synthetase; InterPro: IPR00163 100.0
TIGR00081237 purC phosphoribosylaminoimidazole-succinocarboxami 100.0
cd00476230 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxam 100.0
KOG2835373 consensus Phosphoribosylamidoimidazole-succinocarb 99.95
KOG2835 373 consensus Phosphoribosylamidoimidazole-succinocarb 98.98
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase Back     alignment and domain information 
Probab=100.00  E-value=8e-100  Score=753.76  Aligned_cols=332  Identities=72%  Similarity=1.172  Sum_probs=314.8

Q ss_pred             CCCCCCceeeccccccccccccCcccccccccchhhHHhhccchhhhHHhHHHhhhhcccccccccCCCCCCcccccccc
Q 017032           43 NSNNYPRISLSVMSNKNQNQNQNQNHHHHQQHLSLDAVISSNRKAELLGDIKGSLSNRLSETNLHLTVPGLKSKTRGKVR  122 (378)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lyeGKvK  122 (378)
                      ....++..++.++.+.+....++.    ..++++.+.+.+++++++++.+++.+|++||++|+|+.++|+|+++|+||||
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~lyeGKvK   84 (370)
T PLN02544          9 EFMKPASPSSGVGGASGKFRAQQL----PSPALSLDDLSSSGRRPEVLGAIKEALSNCLTETNLDLTVPGLGSRRRGKVR   84 (370)
T ss_pred             cccCCccccccccccccccccccC----CCCCccccccccccccHHHHHHHHHHHHhhhhhccccccCCCCccccccccc
Confidence            334555555666666665555544    6778889999999999999999999999999999999899999999999999


Q ss_pred             eeeecCCeEEEEEcCCccccccccCCCCchhHHHHHHHHHHHHhccCCCCCccccCCCCceEEEeccceeeeEEEEeeee
Q 017032          123 DIYDGGDYLVLVTTDRQSAFDRILASIPFKGQVLNETSLWWFDQTRHITPNAVISSPDKNVTIAKKCSVIPVEFVVRGFV  202 (378)
Q Consensus       123 dVY~~~d~ll~~fkDriSAfD~~~~~IpgKG~vln~iS~~~Fe~L~~gIpTHfi~~~~~~~~lvkk~~miPlEvVvRn~a  202 (378)
                      +||+.++.+||+||||+||||+.++.|||||++||+||+|||+++++|||||||+.+++++|+||||+|||||||||||+
T Consensus        85 dvY~~~d~ll~vfkDriSAFD~~~~~IpgKG~vln~iS~~wF~~l~~~IptH~i~~~~~~~mlVkk~~~iPlEvVvR~y~  164 (370)
T PLN02544         85 DIYDLGDYLVLVTTDRQSAFDRVLASIPFKGQVLNQTSAWWFNNTKHITPNALVSSPDPNVTIAKKCSVFPVEFVVRGYM  164 (370)
T ss_pred             eEEecCCeEEEEEeCCcccccccCCCCCChhHHHHHHHHHHHHHhhCcCCcceeccCCCceEEEEEeeeeeEEEEEEeee
Confidence            99999889999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeeccCCCCCCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 017032          203 TGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTPDEIVKLGLMTEAEFDEASRKALRLFE  282 (378)
Q Consensus       203 tGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~ttK~d~~Dp~Is~e~i~~lglvt~ee~~~i~~~al~I~~  282 (378)
                      |||++||+|++|++|.+++||++||+|+++|++|++|||||+||+|+||++||+++++++|+++++|+++|+++|++||+
T Consensus       165 tGS~~~slw~~Y~~g~~~~~Gi~lpeGl~eg~kLp~PI~tpstK~d~hD~~Is~~~i~~~g~~~~ee~~~i~~~alki~~  244 (370)
T PLN02544        165 TGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHDVPISPEEIVEEGLMTQEDFDEVSSKALALFA  244 (370)
T ss_pred             eccchHHHHHHHhccCcccccccCCCCccccCCCCCCeEEEeeccccCCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCeEEeeeeEeeecCCCcEEEEeeccCCCCCcccccccchhhhhcCCCCCCCcHHHHHHHHHhcCCCCCCC
Q 017032          283 YGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDE  362 (378)
Q Consensus       283 iL~~~~~~~Gl~LVD~KlEFG~d~~GeIvLaDEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~~~~~~~~  362 (378)
                      +++++|+++||+|||||||||++.+|+|+|+|||+||||||||++++|+.||+.|..|+++||||+|+||+++|++|+++
T Consensus       245 ~l~~~~~~~GiiLvD~K~EFG~d~~G~IvL~DEI~TPDSsR~Wd~~tye~~~~~G~~~~s~DKq~vR~wl~~~~~~~~~~  324 (370)
T PLN02544        245 FGQEVAAEHGLILVDTKYEFGKDADGTILLIDEVHTPDSSRYWLADSYEERHAAGLEPENIDKEFLRLWFKENCDPYKDE  324 (370)
T ss_pred             HHHHHHHHCCCeEEEeeEEeeECCCCcEEEEEeccCCCceeeeecCCccccccCCCCCCCcChHHHHHHHHccCccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988889998


Q ss_pred             CCCCCcHHHHHHHhcC
Q 017032          363 VLPDAPEELICELAWR  378 (378)
Q Consensus       363 ~~P~lP~e~v~~~~~r  378 (378)
                      ++|+||+|+|++|++|
T Consensus       325 ~~P~lP~evv~~ts~r  340 (370)
T PLN02544        325 VLPEAPAELVCELSWR  340 (370)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999999986

>PRK12607 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>PRK13960 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type Back     alignment and domain information
>PRK13959 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional Back     alignment and domain information
>cd01415 SAICAR_synt_PurC bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>PRK09362 phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed Back     alignment and domain information
>cd01416 SAICAR_synt_Ade5 Ade5_like 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01259 SAICAR_synt: SAICAR synthetase; InterPro: IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase (6 Back     alignment and domain information
>TIGR00081 purC phosphoribosylaminoimidazole-succinocarboxamide synthase Back     alignment and domain information
>cd00476 SAICAR_synt 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase Back     alignment and domain information
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
1a48_A306 Saicar Synthase Length = 306 7e-31
1obg_A305 Saicar-Synthase Complexed With Atp Length = 305 7e-31
3r9r_A301 Structure Of A Phosphoribosylaminoimidazole-Succino 1e-30
2ywv_A244 Crystal Structure Of Saicar Synthetase From Geobaci 6e-11
2yzl_A242 Crystal Structure Of Phosphoribosylaminoimidazole- 8e-11
3u55_A238 Crystal Structure (Type-2) Of Saicar Synthetase Fro 4e-09
3u54_A238 Crystal Structure (Type-1) Of Saicar Synthetase Fro 2e-08
4ja0_A 425 Crystal Structure Of The Invertebrate Bi-functional 4e-08
3nua_A238 Crystal Structure Of Phosphoribosylaminoimidazole-S 4e-07
1kut_A230 Structural Genomics, Protein Tm1243, (Saicar Synthe 3e-04
3kre_A263 Crystal Structure Of Phosphoribosylaminoimidazole-s 7e-04
>pdb|1A48|A Chain A, Saicar Synthase Length = 306 Back     alignment and structure 
Iteration: 1

 Score =  131 bits (329), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 40/264 (15%)
Query: 117 TRGKVRDIY--DGGDYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWF-----DQTR 168
            RGKVRDIY  D G  L+ V TDR SA+D I+  SIP KG +L + S +WF     D   
Sbjct: 16  ARGKVRDIYEVDAGT-LLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRN 74
Query: 169 H---ITPN--------AVISSP------DKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLW 211
           H   I P         A +S P      +    +  K  +IP+E +VRG++TGS     W
Sbjct: 75  HLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSA----W 130
Query: 212 TVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAE 269
             Y K      G   P GL ++Q+ P  I TP+TKAE  +HD  ++P +  +L  + E  
Sbjct: 131 KEYVK-TGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAEL--VGEDL 187
Query: 270 FDEASRKALRLFEYGQRVASEHGLILVDTKYEFG-KSSDDSILLIDEVHTPDSSRYWIAH 328
               +  A++L+   +  A E G+I+ DTK+EFG     + I+L+DEV TPDSSR+W   
Sbjct: 188 SRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSSRFWNGA 247
Query: 329 SYEERFQSGLEPENVDKEFLRLWF 352
           SY    + G   ++ DK+FLR W 
Sbjct: 248 SY----KVGESQDSYDKQFLRDWL 267
>pdb|1OBG|A Chain A, Saicar-Synthase Complexed With Atp Length = 305 Back     alignment and structure
>pdb|3R9R|A Chain A, Structure Of A Phosphoribosylaminoimidazole-Succinocarboxamide Synthase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 301 Back     alignment and structure
>pdb|2YWV|A Chain A, Crystal Structure Of Saicar Synthetase From Geobacillus Kaustophilus Length = 244 Back     alignment and structure
>pdb|2YZL|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole- Succinocarboxamide Synthase With Adp From Methanocaldococcus Jannaschii Length = 242 Back     alignment and structure
>pdb|3U55|A Chain A, Crystal Structure (Type-2) Of Saicar Synthetase From Pyrococcus Horikoshii Ot3 Length = 238 Back     alignment and structure
>pdb|3U54|A Chain A, Crystal Structure (Type-1) Of Saicar Synthetase From Pyrococcus Horikoshii Ot3 Length = 238 Back     alignment and structure
>pdb|4JA0|A Chain A, Crystal Structure Of The Invertebrate Bi-functional Purine Biosynthesis Enzyme Paics At 2.8 A Resolution Length = 425 Back     alignment and structure
>pdb|3NUA|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole-Succinocarboxamide Synthase From Clostridium Perfringens Length = 238 Back     alignment and structure
>pdb|1KUT|A Chain A, Structural Genomics, Protein Tm1243, (Saicar Synthetase) Length = 230 Back     alignment and structure
>pdb|3KRE|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole-succinocarboxamide Synthase From Ehrlichia Chaffeensis At 1.8a Resolution Length = 263 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
3r9r_A301 Phosphoribosylaminoimidazole-succinocarboxamide S; 1e-128
2cnq_A306 Phosphoribosylaminoimidazole-succinocarboxamide sy 1e-125
1kut_A230 Phosphoribosylaminoimidazole-succinocarboxamide sy 2e-80
2ywv_A244 Phosphoribosylaminoimidazole succinocarboxamide S; 3e-73
2z02_A242 Phosphoribosylaminoimidazole-succinocarboxamide sy 4e-68
3nua_A238 Phosphoribosylaminoimidazole-succinocarboxamide S; 4e-66
2gqr_A237 Phosphoribosylaminoimidazole-succinocarboxamide sy 1e-63
3kre_A263 Phosphoribosylaminoimidazole-succinocarboxamide S; 5e-63
2h31_A 425 Multifunctional protein ADE2; alpha-beta-alpha, li 5e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A {Mycobacterium abscessus} Length = 301 Back     alignment and structure
 Score =  369 bits (950), Expect = e-128
 Identities = 89/289 (30%), Positives = 146/289 (50%), Gaps = 29/289 (10%)

Query: 106 LHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRILAS-IPFKGQVLNETSLWW 163
           +  ++   +    GKVR++Y    ++L+ V TDR SAFD +L + IP KG++L   S+++
Sbjct: 5   MRPSLSDYQHVASGKVRELYRVDDEHLLFVATDRISAFDFVLDTPIPDKGRILTAMSVFF 64

Query: 164 FDQTRHITPNAVISSPDK---------NVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVY 214
           F       PN +   PD             + ++  ++PVE V RG++TGS        Y
Sbjct: 65  FGLL--TVPNHLAGPPDDPRIPEEVLGRALLVRRLDMLPVECVARGYLTGSG----LLDY 118

Query: 215 NKGIRNYCGNALPDGLVKNQKLPANILTPTTKAE--DHDVPVTPDEIVKLGLMTEAEFDE 272
            +     CG+ LP GL +  +L   + TP TKA+  +HD+ V    +V  GL+     ++
Sbjct: 119 QRT-GAVCGHVLPQGLGEASRLDPPLFTPATKADIGEHDMNVDFAAVV--GLVGAVRANQ 175

Query: 273 ASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDDSILLIDEVHTPDSSRYWIAHSYEE 332
              + ++++      A   G+IL DTK+EFG   + +++L DEV TPDSSRYW A  Y+ 
Sbjct: 176 LRDETIKIYTRAAAHALHKGIILADTKFEFGVDIEGNLVLADEVFTPDSSRYWDAAHYQP 235

Query: 333 RFQSGLEPENVDKEFLRLWF---KDHCNPYEDEVLPDAPEELICELAWR 378
               G+  ++ DK+F+R W    +   +   D   P  P+E+      R
Sbjct: 236 ----GVVQDSFDKQFVRNWLTGPESGWDRASDTPPPPLPDEVAVATRER 280
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A* Length = 306 Back     alignment and structure
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1 Length = 230 Back     alignment and structure
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus} Length = 244 Back     alignment and structure
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A* Length = 242 Back     alignment and structure
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase, center for structural G of infectious diseases; HET: ADP AMP CIT; 1.40A {Clostridium perfringens} Length = 238 Back     alignment and structure
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A* Length = 237 Back     alignment and structure
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.80A {Ehrlichia chaffeensis str} Length = 263 Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Length = 425 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
2cnq_A306 Phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
3r9r_A301 Phosphoribosylaminoimidazole-succinocarboxamide S; 100.0
3kre_A263 Phosphoribosylaminoimidazole-succinocarboxamide S; 100.0
2z02_A242 Phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
2gqr_A237 Phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
1kut_A230 Phosphoribosylaminoimidazole-succinocarboxamide sy 100.0
2ywv_A244 Phosphoribosylaminoimidazole succinocarboxamide S; 100.0
3nua_A238 Phosphoribosylaminoimidazole-succinocarboxamide S; 100.0
3u55_A238 Phosphoribosylaminoimidazole-succinocarboxamide S; 100.0
2h31_A 425 Multifunctional protein ADE2; alpha-beta-alpha, li 100.0
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-82  Score=619.31  Aligned_cols=255  Identities=37%  Similarity=0.644  Sum_probs=237.5

Q ss_pred             CCC-CCcccccccceeeecC-CeEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccCCCCCccccC--------
Q 017032          110 VPG-LKSKTRGKVRDIYDGG-DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVISS--------  178 (378)
Q Consensus       110 ~p~-l~~lyeGKvKdVY~~~-d~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIpTHfi~~--------  178 (378)
                      +|+ |+++|+||||+||+++ +.+||+||||+||||++++ .|||||++||+||+|||++|++|||||||+.        
T Consensus         8 ~~~~~~~ly~GKvkdvY~~~d~~ll~v~~DriSAfD~~~~~~IpgKG~vl~~iS~~~F~~L~~~iptH~i~~~~~~~~~~   87 (306)
T 2cnq_A            8 LDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVDIAPGKTIFD   87 (306)
T ss_dssp             CTTSSCEEEECSSEEEEEEETTEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTTTTSEESBCCCCTTCCGGG
T ss_pred             ccccccccccCCceEEEEcCCCEEEEEEeCCCCCcccccCCCCCcHhHHHHHHHHHHHHHHhccCCcceeeccccccccc
Confidence            477 9999999999999987 5899999999999999985 8999999999999999999999999999963        


Q ss_pred             --------------CCCceEEEeccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCCCCceEeec
Q 017032          179 --------------PDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPT  244 (378)
Q Consensus       179 --------------~~~~~~lvkk~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L~~PivE~t  244 (378)
                                    +++++|+||||+|||||||||||+|||+    |++|++ .+++||+.||+|+++|++||+|||||+
T Consensus        88 ~~P~~~~~y~y~~~l~~r~~lvkk~~~iPlE~VvR~y~tGS~----~k~y~~-~~~v~Gi~lp~Gl~eg~~Lp~Pi~tp~  162 (306)
T 2cnq_A           88 YLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSA----WKEYVK-TGTVHGLKQPQGLKESQEFPEPIFTPS  162 (306)
T ss_dssp             GSCGGGGSHHHHHHHTTSEEEEECCEECSSBEEEEEECCHHH----HHHHHH-HSEETTEECCTTCCTTCEEEEEEECCB
T ss_pred             ccccccccccchhhcCCceEEEEecceeeEEEEEeeeeccch----HHHHhc-cCccccccCCCCCcccCCCCCCEEEee
Confidence                          4677899999999999999999999996    999987 489999999999999999999999999


Q ss_pred             cCCCC--CCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCC-CcEEEEeeccCCCC
Q 017032          245 TKAED--HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSD-DSILLIDEVHTPDS  321 (378)
Q Consensus       245 tK~d~--~Dp~Is~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~-GeIvLaDEI~TPDS  321 (378)
                      ||+|.  |||+||++++++  +++++++++|+++|++||++++++|+++||+|||||||||++.+ |+|+|+|||+||||
T Consensus       163 tK~d~~~hD~~Is~~~~~~--~~~~e~~~~i~~~al~i~~~l~~~~~~~GiiLvD~K~EFG~d~~~G~ivL~DEI~TPDS  240 (306)
T 2cnq_A          163 TKAEQGEHDENISPAQAAE--LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDS  240 (306)
T ss_dssp             CCCC---CCCBCCHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEETTTTEEEEESCCSCTTT
T ss_pred             ecccccCCCCCCCHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeEEeEEeCCCCcEEEEEeecCCCc
Confidence            99994  999999999999  79999999999999999999999999999999999999999977 99999999999999


Q ss_pred             CcccccccchhhhhcCCCCCCCcHHHHHHHHHhc-CCCCCCCCCCCCcHHHHHHHhcC
Q 017032          322 SRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDH-CNPYEDEVLPDAPEELICELAWR  378 (378)
Q Consensus       322 ~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~-~~~~~~~~~P~lP~e~v~~~~~r  378 (378)
                      ||||++++|+.    |..+++||||+||+|+.++ |+  +.+ +|+||+++|+++++|
T Consensus       241 sR~W~~~~y~~----G~~~~s~DKq~~R~~l~~~g~~--~~~-~p~lp~~vv~~~~~~  291 (306)
T 2cnq_A          241 SRFWNGASYKV----GESQDSYDKQFLRDWLTANKLN--GVN-GVKMPQDIVDRTRAK  291 (306)
T ss_dssp             EEEEETTTCCT----TSCCCCSSTHHHHHHHHHTTCT--TCT-TCCCCHHHHHHHHHH
T ss_pred             cceeccccccC----CCCCcccCHHHHHhHHhhcCCC--CCC-CCCCCHHHHHHHHHH
Confidence            99999999974    8889999999999999873 33  344 899999999998864
>3r9r_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid; 1.85A {Mycobacterium abscessus} Back     alignment and structure
>3kre_A Phosphoribosylaminoimidazole-succinocarboxamide S; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.80A {Ehrlichia chaffeensis str} Back     alignment and structure
>2z02_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; 2-layer sandwich, ligase, purine biosynthesis, structural genomics; HET: ATP CIT; 2.03A {Methanocaldococcus jannaschii} PDB: 2yzl_A* Back     alignment and structure
>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC, ADE2, ADE1, nucleotide complex, octahedral magnesium coordination; HET: ADP; 2.00A {Escherichia coli} PDB: 2gqs_A* Back     alignment and structure
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1 Back     alignment and structure
>2ywv_A Phosphoribosylaminoimidazole succinocarboxamide S; ADP complex, structural genomics, NPPSFA; HET: ADP; 1.75A {Geobacillus kaustophilus} Back     alignment and structure
>3nua_A Phosphoribosylaminoimidazole-succinocarboxamide S; alpha-beta structure, csgid, ligase, center for structural G of infectious diseases; HET: ADP AMP CIT; 1.40A {Clostridium perfringens} SCOP: d.143.1.0 Back     alignment and structure
>3u55_A Phosphoribosylaminoimidazole-succinocarboxamide S; saicar synthetase-like fold, ligase, ATP-binding, NOVO purine biosynthesis; 1.90A {Pyrococcus horikoshii} PDB: 3u54_A Back     alignment and structure
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d2cnqa1304 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast 4e-55
d1kuta_224 d.143.1.1 (A:) SAICAR synthase {Thermotoga maritim 4e-44
>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 304 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: SAICAR synthase
domain: SAICAR synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  181 bits (460), Expect = 4e-55
 Identities = 89/303 (29%), Positives = 140/303 (46%), Gaps = 39/303 (12%)

Query: 101 LSETNLHLTVPGLKSKTRGKVRDIYD-GGDYLVLVTTDRQSAFDRIL-ASIPFKGQVLNE 158
           +++T L   +P +    RGKVRDIY+     L+ V TDR SA+D I+  SIP KG +L +
Sbjct: 2   ITKTELDGILPLV---ARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTK 58

Query: 159 TSLWWFDQTRHITPNAVISSP----------------------DKNVTIAKKCSVIPVEF 196
            S +WF    +   N ++                         +    +  K  +IP+E 
Sbjct: 59  LSEFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEV 118

Query: 197 VVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLPANILTPTTKAEDHDVPVTP 256
           +VRG++TGS                 G   P GL ++Q+ P  I TP+TKAE  +     
Sbjct: 119 IVRGYITGSAWKEYV-----KTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENI 173

Query: 257 DEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGK-SSDDSILLIDE 315
                  L+ E      +  A++L+   +  A E G+I+ DTK+EFG     + I+L+DE
Sbjct: 174 SPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDE 233

Query: 316 VHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICEL 375
           V TPDSSR+W   SY+     G   ++ DK+FLR W   +     +      P++++   
Sbjct: 234 VLTPDSSRFWNGASYKV----GESQDSYDKQFLRDWLTANKLNGVNG--VKMPQDIVDRT 287

Query: 376 AWR 378
             +
Sbjct: 288 RAK 290
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId: 2336]} Length = 224 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d2cnqa1304 SAICAR synthase {Baker's yeast (Saccharomyces cere 100.0
d1kuta_224 SAICAR synthase {Thermotoga maritima [TaxId: 2336] 100.0
>d2cnqa1 d.143.1.1 (A:2-305) SAICAR synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: SAICAR synthase-like
superfamily: SAICAR synthase-like
family: SAICAR synthase
domain: SAICAR synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.6e-77  Score=576.67  Aligned_cols=262  Identities=36%  Similarity=0.614  Sum_probs=237.0

Q ss_pred             ccccccccCCCCCCcccccccceeeecC-CeEEEEEcCCccccccccC-CCCchhHHHHHHHHHHHHhccCCCCCccccC
Q 017032          101 LSETNLHLTVPGLKSKTRGKVRDIYDGG-DYLVLVTTDRQSAFDRILA-SIPFKGQVLNETSLWWFDQTRHITPNAVISS  178 (378)
Q Consensus       101 ~~~~~~~~~~p~l~~lyeGKvKdVY~~~-d~ll~~fkDriSAfD~~~~-~IpgKG~vln~iS~~~Fe~L~~gIpTHfi~~  178 (378)
                      +++|+|+.   .|+++|+||||+||+++ +.+||+||||+||||++++ .|||||+++|+||+|||++|++|||||||+.
T Consensus         2 ~~~~~~~~---~l~ll~~GKvK~vY~~d~~~ll~~~tDriSAfD~~~~~~Ip~KG~~l~~is~~~F~~l~~gi~tH~i~~   78 (304)
T d2cnqa1           2 ITKTELDG---ILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVDI   78 (304)
T ss_dssp             CCSCCCTT---SSCEEEECSSEEEEEEETTEEEEEECSCCEETTEECSSCCTTHHHHHHHHHHHHHHHTTTTSEESBCCC
T ss_pred             ceeeccCC---CCcceecccceeEEEcCCCEEEEEEECCccccccccCCCCCChHHHHHHHHHHHHHHhhccCCcceecc
Confidence            56777641   37899999999999985 5899999999999999975 8999999999999999999999999999974


Q ss_pred             ----------------------CCCceEEEeccceeeeEEEEeeeeecCCcchhhHhhhcCccccccccCCCCcccCCCC
Q 017032          179 ----------------------PDKNVTIAKKCSVIPVEFVVRGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKL  236 (378)
Q Consensus       179 ----------------------~~~~~~lvkk~~miPlEvVvRn~atGS~~krl~~rY~~G~~~~~g~~lp~Gl~eg~~L  236 (378)
                                            ++++.|+|++|+|||||||||||+|||+    |++|.++ +.+||+.+|+|++++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vkk~~~iPiE~VvR~y~tGS~----~~~y~~~-~~~~g~~lp~gl~~~~~l  153 (304)
T d2cnqa1          79 APGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIVRGYITGSA----WKEYVKT-GTVHGLKQPQGLKESQEF  153 (304)
T ss_dssp             CTTCCGGGGSCGGGGSHHHHHHHTTSEEEEECCEECSSBEEEEEECCHHH----HHHHHHH-SEETTEECCTTCCTTCEE
T ss_pred             CCchhhhhcccccccccchhhccCCceeEEEeeeeeeeEEEEecceeccc----eeecccC-ceeccccCCCCccccccC
Confidence                                  3578899999999999999999999996    8999875 689999999999999999


Q ss_pred             CCceEeeccCCCC--CCCCCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCeEEeeeeEeeecCCC-cEEEE
Q 017032          237 PANILTPTTKAED--HDVPVTPDEIVKLGLMTEAEFDEASRKALRLFEYGQRVASEHGLILVDTKYEFGKSSDD-SILLI  313 (378)
Q Consensus       237 ~~PivE~ttK~d~--~Dp~Is~e~i~~lglvt~ee~~~i~~~al~I~~iL~~~~~~~Gl~LVD~KlEFG~d~~G-eIvLa  313 (378)
                      ++|+|||++|+|.  ||.+++.+++..  ++++++++.|++++++||++++++|+++||+|||||+|||++.+| +|+|+
T Consensus       154 ~~pi~tpstK~e~gd~d~~~~~~~~~~--i~~~~~~~~i~~~sl~i~~~~~~~~~~~GliLvD~K~EFG~~~~~~eiili  231 (304)
T d2cnqa1         154 PEPIFTPSTKAEQGEHDENISPAQAAE--LVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILV  231 (304)
T ss_dssp             EEEEECCBCCCC---CCCBCCHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEETTTTEEEEE
T ss_pred             CcccccchhhhhcchhhhhhhHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeEEEEEecccccceEEE
Confidence            9999999999885  787888877665  799999999999999999999999999999999999999998654 89999


Q ss_pred             eeccCCCCCcccccccchhhhhcCCCCCCCcHHHHHHHHHhcCCCCCCCCCCCCcHHHHHHHhcC
Q 017032          314 DEVHTPDSSRYWIAHSYEERFQSGLEPENVDKEFLRLWFKDHCNPYEDEVLPDAPEELICELAWR  378 (378)
Q Consensus       314 DEI~TPDS~RlWd~~t~e~rfr~g~~~~~~DKq~~R~w~~~~~~~~~~~~~P~lP~e~v~~~~~r  378 (378)
                      ||++||||||||+.++|+    .|..++++|||++|+||.+.+  |...++|+||+|++.++++|
T Consensus       232 DEv~TPDs~R~W~~~~y~----~g~~~~~lDKq~~Rd~l~~~~--~~~~~~p~lP~ei~~~~~~~  290 (304)
T d2cnqa1         232 DEVLTPDSSRFWNGASYK----VGESQDSYDKQFLRDWLTANK--LNGVNGVKMPQDIVDRTRAK  290 (304)
T ss_dssp             SCCSCTTTEEEEETTTCC----TTSCCCCSSTHHHHHHHHHTT--CTTCTTCCCCHHHHHHHHHH
T ss_pred             eeecCCCccceecccccc----CCCCccccchHHHHHHHHhcC--cCCCCCCCCCHHHHHHHHHH
Confidence            999999999999999997    488899999999999999853  45556799999999999875
>d1kuta_ d.143.1.1 (A:) SAICAR synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure