Citrus Sinensis ID: 017082

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
Protein Sequence
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQVCICFVSIFVNL
Secondary Structure (PSIPRED)
cccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHcccEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEHHHccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHEEEHccccccccccEEcccccccHHHHccccccccccEEEccccEEEEEcccccccEEEEcccccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccEEEEEEcccccHHHHHHEEcc
Coil and Loop (DISEMBL)
MASMTSRFVAKnctnlhaseasfrptgssILVGVAQAHLDlrgglsaidhgkslaieskpqnhivalaapysiiqnsrcSQVLCKAAAnvsgdvpskspggmsqYEQIIEILTTLFPVWVILGTIIGIykpsavtwletdLFTIGLGFLMLSMGLTLTFEDFRRclrnpwtvgIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLIlvsccpggqasnvATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLagqlvpvdaaglAISTFQVVLVPTVVGvlaneffpkftskiisvTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLskisfgestsrtiSIECGMQVCICFVSIFVNL
Flexible Loop (DISEMBL)
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQVCICFVSIFVNL
Low Complexity Region (SEG)
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQvvlvptvvgvLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQVCICFVSIFVNL
Disordered region (IsUnstruct)
************CT***********TGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANV*************QYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQVCICFVSIFV**
Disordered Region (DISOPRED)
******R**AKNCTNLHASEASFRPTG*******************************************************************************QIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQVCICFVSIFVNL
Disordered Region (DISEMBL)
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQVCICFVSIFVNL
Disordered Region (DISPRO)
****TSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSI*********LCK***NVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQVCICFVSIFVNL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQVCICFVSIFVNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	377	2.2.26 [Sep-21-2011]
Q1EBV7	409	Sodium/pyruvate cotranspo	yes	no	0.856	0.789	0.809	1e-150
Q5VRB2	419	Probable sodium/metabolit	yes	no	0.763	0.687	0.868	1e-144
Q93YR2	401	Probable sodium/metabolit	no	no	0.729	0.685	0.436	5e-59
Q7XVB3	406	Probable sodium/metabolit	no	no	0.740	0.687	0.437	3e-54
Q8RXE8	431	Probable sodium/metabolit	no	no	0.679	0.593	0.384	8e-46
Q6K739	423	Probable sodium/metabolit	no	no	0.679	0.605	0.376	1e-45
O34524	321	Uncharacterized sodium-de	yes	no	0.655	0.769	0.426	2e-44
Q8VYY4	409	Probable sodium/metabolit	no	no	0.742	0.684	0.331	3e-40
F4JPW1	407	Probable sodium/metabolit	no	no	0.716	0.663	0.344	3e-39
Q650U0	401	Probable sodium/metabolit	no	no	0.687	0.645	0.348	2e-37

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  532 bits (1370), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/331 (80%), Positives = 297/331 (89%), Gaps = 8/331 (2%)

Query: 36  QAHLDLRGGLSAIDHGKSLAIE-SKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDV 94
           Q HLD    +S  + G SL I+ SKP + + AL A  S        +V+CKAAA VSGD+
Sbjct: 31  QTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEATSS-------RRVVCKAAAGVSGDL 83

Query: 95  PSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMG 154
           P  +P  +SQYE+IIE+LTTLFP+WVILGT++GI+KPS VTWLETDLFT+GLGFLMLSMG
Sbjct: 84  PESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMG 143

Query: 155 LTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214
           LTLTFEDFRRCLRNPWTVG+GFLAQY+IKP+LGF+IAMTLKLSAPLATGLILVSCCPGGQ
Sbjct: 144 LTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQ 203

Query: 215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLV 274
           ASNVATYISKGNVALSVLMTTCSTIGAI+MTPLLTKLLAGQLVPVDAAGLA+STFQVVLV
Sbjct: 204 ASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLV 263

Query: 275 PTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALL 334
           PT++GVLANEFFPKFTSKII+VTPLIGVILTTLLCASPIGQV+ VLKTQGAQLI PVALL
Sbjct: 264 PTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQGAQLILPVALL 323

Query: 335 HAAAFALGYWLSKISFGESTSRTISIECGMQ 365
           HAAAFA+GYW+SK SFGESTSRTISIECGMQ
Sbjct: 324 HAAAFAIGYWISKFSFGESTSRTISIECGMQ 354

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/289 (86%), Positives = 270/289 (93%), Gaps = 1/289 (0%)

Query: 78  RCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWL 137
           R  Q+LCKA AN+S ++P   P   +QYE+I+E+LTTLFPVWVILGTIIGIYKPS VTWL
Sbjct: 76  RSCQLLCKAEANISSNLPESIPSEANQYEKIVELLTTLFPVWVILGTIIGIYKPSMVTWL 135

Query: 138 ETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLS 197
           ETDLFT+GLGFLMLSMGLTLTFEDFRRC+RNPWTVG+GFLAQYLIKPMLGF IAMTLKLS
Sbjct: 136 ETDLFTVGLGFLMLSMGLTLTFEDFRRCMRNPWTVGVGFLAQYLIKPMLGFAIAMTLKLS 195

Query: 198 APLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLV 257
           APLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLV
Sbjct: 196 APLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLV 255

Query: 258 PVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVS 317
           PVDAAGLAISTFQVVL+PT+VGVLA+E+FPKFT +IIS+TPLIGV+LTTLLCASPIGQVS
Sbjct: 256 PVDAAGLAISTFQVVLLPTIVGVLAHEYFPKFTERIISITPLIGVLLTTLLCASPIGQVS 315

Query: 318 AVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQ 365
            VLK QG QLI PVALLH AAFALGYWLSK+ SFGESTSRTISIECGMQ
Sbjct: 316 EVLKAQGGQLIIPVALLHVAAFALGYWLSKVSSFGESTSRTISIECGMQ 364

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  228 bits (581), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 121/277 (43%), Positives = 168/277 (60%), Gaps = 2/277 (0%)

Query: 91  SGDVPSKSPGGMSQYEQII-EILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFL 149
           S D+P++      ++ + + E ++T FP+WV LG ++G+ +PS   W+  +   +GL   
Sbjct: 75  SNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTFNWVTPNWTIVGLTIT 134

Query: 150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSC 209
           ML MG+TLT +D R  L  P  +  GFL QY + P+  F ++  L L    A GLILV C
Sbjct: 135 MLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPLSAFFVSKLLNLPPHYAAGLILVGC 194

Query: 210 CPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTF 269
           CPGG ASN+ TYI++GNVALSVLMT  ST+ A++MTPLLT  LA Q + VDA GL +ST 
Sbjct: 195 CPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTL 254

Query: 270 QVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIF 329
           QVVL+P + G   N++F K    +  V P I V    +LC   IGQ ++ +   G Q++ 
Sbjct: 255 QVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASAILMSGKQVVL 314

Query: 330 PVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQ 365
              LLH + F  GY  S+I     ++SRTISIE GMQ
Sbjct: 315 ASCLLHISGFLFGYLFSRILGIDVASSRTISIEVGMQ 351

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  212 bits (540), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/295 (43%), Positives = 172/295 (58%), Gaps = 16/295 (5%)

Query: 84  CKAAANVSGDVPSKSPGGMSQ------------YEQIIEILTTLFPVWVILGTIIGIYKP 131
           C AAA+     PSK PGG S               Q+ E+L+  FPVWV     + +++P
Sbjct: 65  CHAAAD---PAPSKIPGGGSGALEAGVVGWRDLLLQVGEVLSLGFPVWVASACAVALWRP 121

Query: 132 SAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA 191
            A  W+      +G+ F ML MG+TLT +D +  L  P  +  GFL QY + P+ GF+I+
Sbjct: 122 PAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMPKELASGFLLQYSVMPLSGFLIS 181

Query: 192 MTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKL 251
             L L +  A GLILVSCCPGG ASN+ TY+++GNVALSVLMT  ST  A  +TPLLT  
Sbjct: 182 KLLNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVALSVLMTAASTFAAAFLTPLLTSK 241

Query: 252 LAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCAS 311
           LAGQ V VD  GL +ST QVVL P ++G L N++       +  + P I V    +LC +
Sbjct: 242 LAGQYVAVDPMGLFVSTSQVVLAPVLLGALLNQYCNGLVQLVSPLMPFIAVATVAVLCGN 301

Query: 312 PIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSK-ISFGESTSRTISIECGMQ 365
            I Q ++ + + G Q++  V  LHA+ F  GY LS+ I    S+SRTISIE GMQ
Sbjct: 302 AIAQNASAILSSGLQVVMSVCWLHASGFFFGYVLSRTIGIDISSSRTISIEVGMQ 356

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  184 bits (468), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 100/260 (38%), Positives = 153/260 (58%), Gaps = 4/260 (1%)

Query: 110 EILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP 169
           +  + L P  V L  +  +  P + TW+  DL+   LG +MLS+G+ L+ +DF    + P
Sbjct: 109 QFWSALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRP 168

Query: 170 WTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVAL 229
             + +GF+AQY++KP+LG ++A    +      G IL  C  G Q S+ A+ +SK +VA+
Sbjct: 169 VPLSVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVAM 228

Query: 230 SVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF 289
           S+L+T+ +TI +++ TPLL+ LL G +VPVDA  ++ S  QVVLVP  +G++ N +    
Sbjct: 229 SILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPV 288

Query: 290 TSKIISVTPLIGVILTTLLCASPIG-QVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI 348
            + +  V P + ++ T+L   SP+    S +L  +G  LI P+   HA AFALGYW SKI
Sbjct: 289 VTLLQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKI 348

Query: 349 ---SFGESTSRTISIECGMQ 365
                 E  SRTIS+  GMQ
Sbjct: 349 PGLRQEEEVSRTISLCTGMQ 368

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 157/260 (60%), Gaps = 4/260 (1%)

Query: 110 EILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP 169
           + L+ L P+ V    +  +  P+  +W+  + +   LG +MLS+G+ L+ +DF    + P
Sbjct: 102 QALSALLPLVVAATAVAALGNPATFSWVSKEYYAPALGGIMLSIGIKLSIDDFALAFKRP 161

Query: 170 WTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVAL 229
             + IG++AQY++KP++G +IA    + +    G +L  C  G Q S+ A+++SKG+VAL
Sbjct: 162 VPLTIGYMAQYIVKPLMGVLIARAFGMPSAFFAGFVLTCCVSGAQLSSYASFLSKGDVAL 221

Query: 230 SVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF 289
           S+L+T+CSTI ++V+TP+LT LL G +VPVD   +A S  QVVLVP  +G+L N +    
Sbjct: 222 SILLTSCSTISSVVVTPVLTGLLIGSVVPVDGIAMAKSILQVVLVPVTLGLLLNTYAKAV 281

Query: 290 TSKIISVTPLIGVILTTLLCASPIG-QVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI 348
            + I  V P + ++ T+L   SP+    S +L ++G  L+ P+   H AAF +GYW+SK+
Sbjct: 282 VNVIQPVMPFVAMLCTSLCIGSPLAINRSKILSSEGFLLLLPIVTFHIAAFIVGYWISKL 341

Query: 349 SF---GESTSRTISIECGMQ 365
                 E   RTIS+  GMQ
Sbjct: 342 PMLRQEEPVCRTISVCTGMQ 361

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O34524|YOCS_BACSU Uncharacterized sodium-dependent transporter YocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/253 (42%), Positives = 151/253 (59%), Gaps = 6/253 (2%)

Query: 116 FPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIG 175
           F +WVI+  ++G   PS  TW+ + + TI LG +M  MGLTL  +DF+  +R PW V IG
Sbjct: 15  FGIWVIVFAVLGFSFPSLFTWISSYI-TIFLGIIMFGMGLTLQADDFKELVRKPWQVIIG 73

Query: 176 FLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTT 235
            +AQY I P++ F +A  L L A +A G+ILV CCPGG ASNV T+++KGN ALSV +TT
Sbjct: 74  VIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAKGNTALSVAVTT 133

Query: 236 CSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIIS 295
            ST+ A V+TPLL  L A + +PV    L IS  Q VL P + G++   FF K  +K + 
Sbjct: 134 ISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFFRKQVAKAVH 193

Query: 296 VTPLIGVI-LTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAA-AFALGYWLSK-ISFGE 352
             PL+ VI +  ++ A   G    +L  Q   LIF V +LH    + LG+  +K +    
Sbjct: 194 ALPLVSVIGIVAIVSAVVSGNRENLL--QSGLLIFSVVILHNGIGYLLGFLCAKLLKMDY 251

Query: 353 STSRTISIECGMQ 365
            + + I+IE GMQ
Sbjct: 252 PSQKAIAIEVGMQ 264

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 166/296 (56%), Gaps = 16/296 (5%)

Query: 86  AAANVS--GDVPSKSPGGMSQYEQIIEIL---TTLFPVWVILGTIIGIYKPSAVTWLETD 140
           A+ N S  G  P   P  + +   I++ +    ++ P  V+  TI+ +  P + TW  + 
Sbjct: 66  ASDNFSEMGLDPGADPFKVIEKPSIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSR 125

Query: 141 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMT----LKL 196
            F   LGFLM ++G+    +DF    + P  + +G++ QYL+KP+LGF+  +      +L
Sbjct: 126 YFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQL 185

Query: 197 SAPLATGLILVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQ 255
             P+  G++LVSC  G Q SN AT+++   +A LS++MT+ ST  A+++TP+L+ LL G+
Sbjct: 186 PTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGK 245

Query: 256 LVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIG- 314
            +PVD  G+  S  QVV+ P   G+L N+ FPK ++ I    P++ V+ T     +P+  
Sbjct: 246 KLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDTACCVGAPLAL 305

Query: 315 QVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISF-----GESTSRTISIECGMQ 365
            +++V+   GA ++  V + H +AF  GY+L+   F      ++  RT+S E GMQ
Sbjct: 306 NINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGMQ 361

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 160/287 (55%), Gaps = 17/287 (5%)

Query: 96  SKSPGGMSQYEQIIEILTTL------FPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFL 149
           S+S      ++++  I+ TL       P  ++L TI+ +  P + TW +   F  GLGF+
Sbjct: 76  SESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPPSFTWFKPRYFVPGLGFM 135

Query: 150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGF---VIAMTL-KLSAPLATGLI 205
           M ++G+     DF   L+ P  +  G++ QYLIKP+LG+   VIA++L  L   +  G++
Sbjct: 136 MFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIM 195

Query: 206 LVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGL 264
           LVSC  G Q SN  T+++  ++A LS++MT+ ST  A+++TP+L+ LL G+ +PVD  G+
Sbjct: 196 LVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGM 255

Query: 265 AISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIG-QVSAVLKTQ 323
             S  QVV+ P   G+L N  FP+ ++ I    P + VI  +    +P+   + ++L   
Sbjct: 256 ISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSCCIGAPLALNIDSILSPF 315

Query: 324 GAQLIFPVALLHAAAFALGYWLSKISFGESTS-----RTISIECGMQ 365
           GA ++F V   H  AF  GY+ +   F ++       RTIS E GMQ
Sbjct: 316 GATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQ 362

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  156 bits (395), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/270 (34%), Positives = 150/270 (55%), Gaps = 11/270 (4%)

Query: 107 QIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCL 166
           +I++   T+ P  V+  TI+ +  P + TW  T  +   LGFLM ++G+  + +DF   +
Sbjct: 86  KILKSANTIIPHVVLGSTILALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAI 145

Query: 167 RNPWTVGIGFLAQYLIKPMLGFV---IAMTL-KLSAPLATGLILVSCCPGGQASNVATYI 222
           + P  +  G++ Q++IKP LGF+   +A+T+  L   L  G++LVSC  G Q SN AT++
Sbjct: 146 QRPDAIAAGYVGQFIIKPFLGFLFGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFL 205

Query: 223 SKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVL 281
           +  ++A LS++MT+ ST  A+ +TP L+  L G+ +PVD  G+  S  Q+V+ P   G+L
Sbjct: 206 TDPHMAPLSIVMTSLSTATAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLL 265

Query: 282 ANEFFPKFTSKIISVTPLIGVILTTLLCASPIG-QVSAVLKTQGAQLIFPVALLHAAAFA 340
            N + P+  S I    P + V +T L   SP+   + AVL   G   +  +   H ++F 
Sbjct: 266 LNRYLPRLCSAIQPFLPPLSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFI 325

Query: 341 LGYWLSKISFGESTS-----RTISIECGMQ 365
            GY L+   F ES       RT+S E GMQ
Sbjct: 326 AGYHLAGTWFRESADVKALQRTVSFETGMQ 355

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
255546619	387	sodium-bile acid cotransporter, putative	0.962	0.937	0.806	1e-165
297738888	417	unnamed protein product [Vitis vinifera]	0.960	0.868	0.810	1e-164
359484381	414	PREDICTED: uncharacterized sodium-depend	0.949	0.864	0.811	1e-163
118488857	420	unknown [Populus trichocarpa x Populus d	0.946	0.85	0.776	1e-154
280967729	444	transmembrane domain protein [Malus x do	0.960	0.815	0.716	1e-151
147784076	433	hypothetical protein VITISV_002026 [Viti	0.960	0.836	0.745	1e-151
357477833	410	Bile acid Na+ symporter family protein [	0.851	0.782	0.810	1e-149
297825925	409	hypothetical protein ARALYDRAFT_901497 [	0.856	0.789	0.815	1e-149
30683305	409	Sodium bile acid symporter-like protein	0.856	0.789	0.809	1e-148
20269901	409	putative sodium-dependent bile acid symp	0.856	0.789	0.806	1e-148

>gi|255546619|ref|XP_002514369.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223546825|gb|EEF48323.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/366 (80%), Positives = 326/366 (89%), Gaps = 3/366 (0%)

Query: 1   MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKP 60
           MASM SRFV K+C  L   E+ +RP+ S     +  + LD+R G    D G++ AI+SKP
Sbjct: 1   MASM-SRFVLKDC-KLQTCESIYRPS-SGFPSRLTISSLDIRNGSFLADKGRTCAIQSKP 57

Query: 61  QNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWV 120
            + +VA+ AP+ +IQ S  SQVLCKAAA+VS DVP+ +P GMS YE+IIE LTTLFPVWV
Sbjct: 58  TSPVVAVDAPFRVIQTSSKSQVLCKAAADVSEDVPNSTPAGMSMYEKIIETLTTLFPVWV 117

Query: 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY 180
           ILGTI+GIYKP+AVTWLETDLFT+GLGFLMLSMGLTLTFEDFRRCLRNPWTVG+GFLAQY
Sbjct: 118 ILGTIVGIYKPAAVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQY 177

Query: 181 LIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 240
           LIKPMLGF +AMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG
Sbjct: 178 LIKPMLGFALAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 237

Query: 241 AIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLI 300
           AI+MTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPT++GVL+NEFFPKFTSKI++VTPLI
Sbjct: 238 AIIMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTIIGVLSNEFFPKFTSKIVTVTPLI 297

Query: 301 GVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISI 360
           GVILTTLLCASPIGQVS VLKTQGAQLI PVALLH AAFALGYWLSKISFGESTSRTISI
Sbjct: 298 GVILTTLLCASPIGQVSDVLKTQGAQLIMPVALLHGAAFALGYWLSKISFGESTSRTISI 357

Query: 361 ECGMQV 366
           ECGMQ+
Sbjct: 358 ECGMQL 363

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738888|emb|CBI28133.3| unnamed protein product [Vitis vinifera]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 296/365 (81%), Positives = 326/365 (89%), Gaps = 3/365 (0%)

Query: 1   MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKP 60
           MASM SRFV K+C  L   +A + P+  S+   +    +++RGG S  + G++LAI++K 
Sbjct: 1   MASM-SRFVLKDC-KLQPFDALYGPSSCSLARRI-HTRVEVRGGCSLPEKGRNLAIQNKQ 57

Query: 61  QNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWV 120
            + IVAL+ P SIIQ SR S +LCKAAANVSGDVP  +P GMSQYE+IIE LTTLFPVWV
Sbjct: 58  HSSIVALSGPSSIIQASRNSHILCKAAANVSGDVPGNTPAGMSQYERIIETLTTLFPVWV 117

Query: 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY 180
           ILGT+IGIYKP+AVTWLETDLFTI LGFLMLSMGLTLTFEDFRRCLRNPWTVG+GFLAQY
Sbjct: 118 ILGTVIGIYKPAAVTWLETDLFTICLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQY 177

Query: 181 LIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 240
           LIKPMLGF I MTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG
Sbjct: 178 LIKPMLGFFIVMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 237

Query: 241 AIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLI 300
           AIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTV+GVL+NEFFPKFTSKI++VTPL+
Sbjct: 238 AIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVIGVLSNEFFPKFTSKIVTVTPLV 297

Query: 301 GVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISI 360
           GVILTTLLCASPIG+VS VLKTQGAQLI PVA+LHAAAFALGYW+SKISFGESTSRTISI
Sbjct: 298 GVILTTLLCASPIGKVSDVLKTQGAQLILPVAILHAAAFALGYWVSKISFGESTSRTISI 357

Query: 361 ECGMQ 365
           ECGMQ
Sbjct: 358 ECGMQ 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484381|ref|XP_002284920.2| PREDICTED: uncharacterized sodium-dependent transporter yocS [Vitis vinifera]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 292/360 (81%), Positives = 322/360 (89%), Gaps = 2/360 (0%)

Query: 6   SRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIV 65
           SRFV K+C  L   +A + P+  S+   +    +++RGG S  + G++LAI++K  + IV
Sbjct: 2   SRFVLKDC-KLQPFDALYGPSSCSLARRI-HTRVEVRGGCSLPEKGRNLAIQNKQHSSIV 59

Query: 66  ALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWVILGTI 125
           AL+ P SIIQ SR S +LCKAAANVSGDVP  +P GMSQYE+IIE LTTLFPVWVILGT+
Sbjct: 60  ALSGPSSIIQASRNSHILCKAAANVSGDVPGNTPAGMSQYERIIETLTTLFPVWVILGTV 119

Query: 126 IGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPM 185
           IGIYKP+AVTWLETDLFTI LGFLMLSMGLTLTFEDFRRCLRNPWTVG+GFLAQYLIKPM
Sbjct: 120 IGIYKPAAVTWLETDLFTICLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPM 179

Query: 186 LGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMT 245
           LGF I MTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMT
Sbjct: 180 LGFFIVMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMT 239

Query: 246 PLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILT 305
           PLLTKLLAGQLVPVDAAGLAISTFQVVLVPTV+GVL+NEFFPKFTSKI++VTPL+GVILT
Sbjct: 240 PLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVIGVLSNEFFPKFTSKIVTVTPLVGVILT 299

Query: 306 TLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECGMQ 365
           TLLCASPIG+VS VLKTQGAQLI PVA+LHAAAFALGYW+SKISFGESTSRTISIECGMQ
Sbjct: 300 TLLCASPIGKVSDVLKTQGAQLILPVAILHAAAFALGYWVSKISFGESTSRTISIECGMQ 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488857|gb|ABK96238.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/362 (77%), Positives = 313/362 (86%), Gaps = 5/362 (1%)

Query: 7   RFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKPQNHIVA 66
           R V ++C NL   +A ++P+ S         HLD R G++   +G+    ++KP++  VA
Sbjct: 6   RLVLQDC-NLLPCQAIYKPS-SCFPSRRLNTHLDPRAGITVPGNGRIWTTQNKPRSPTVA 63

Query: 67  LAA--PYSIIQNSRCSQVLCKAAANVSGDVP-SKSPGGMSQYEQIIEILTTLFPVWVILG 123
           L A  P SII +SR  QVLC+AAAN  GDVP S + GGMSQYE+IIE LTTLFPVWV+LG
Sbjct: 64  LTALSPSSIIHSSRNPQVLCRAAANAPGDVPDSSTHGGMSQYERIIETLTTLFPVWVVLG 123

Query: 124 TIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIK 183
           TI+GIYKP+AVTWLETDLFT+GLGFLMLSMGLTLTFEDFRRCLRNPWTVG+GFLAQYLIK
Sbjct: 124 TILGIYKPAAVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIK 183

Query: 184 PMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIV 243
           P+LGFVIA TLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAI+
Sbjct: 184 PLLGFVIATTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAII 243

Query: 244 MTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVI 303
           MTPLLTKLLAGQLVPVDA GLAISTFQVVLVPT+VGVL+NEFFP FTSKI++ TPL+GVI
Sbjct: 244 MTPLLTKLLAGQLVPVDAVGLAISTFQVVLVPTIVGVLSNEFFPTFTSKIVTFTPLVGVI 303

Query: 304 LTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGESTSRTISIECG 363
           LTTLLCASPIGQVS VLKTQG QLI PVALLH AAFALGYWLS++SFGESTSRTISIECG
Sbjct: 304 LTTLLCASPIGQVSDVLKTQGGQLIMPVALLHVAAFALGYWLSRMSFGESTSRTISIECG 363

Query: 364 MQ 365
           MQ
Sbjct: 364 MQ 365

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|280967729|gb|ACZ98535.1| transmembrane domain protein [Malus x domestica]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/392 (71%), Positives = 321/392 (81%), Gaps = 30/392 (7%)

Query: 1   MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKP 60
           M+S++S+F  K+   L   +A  RP  +S+     Q+HLDLRG LS  ++ +  AI+SK 
Sbjct: 1   MSSISSKFALKD-FKLRTCDAFCRP-AASLSARRLQSHLDLRGELSVPENVRCCAIQSKT 58

Query: 61  QNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWV 120
            + IVA  +  SIIQ SR S+V CKAA N+SGD+PS +P GM+ YE+IIE LTTLFPVWV
Sbjct: 59  WSPIVAKPS-SSIIQTSRNSKVFCKAATNLSGDLPSSTPSGMNLYEKIIETLTTLFPVWV 117

Query: 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY 180
           ILGTI+GIYKP+AVTWL+TDLFT+GLGFLMLSMGLTLTFEDFRRCLRNPWTVG+GFLAQY
Sbjct: 118 ILGTILGIYKPAAVTWLQTDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQY 177

Query: 181 LIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 240
           +IKP+LGFVIA+TLKLSAP+ATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG
Sbjct: 178 MIKPLLGFVIALTLKLSAPIATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 237

Query: 241 AIVMTPLLTKLLAGQLVPVDAA---------------------------GLAISTFQVVL 273
           AI+MTPLLTKLLAGQLVPVDA                            GLA+STFQVVL
Sbjct: 238 AIIMTPLLTKLLAGQLVPVDAVFISNTCWPALPIVIKEILRIKYKDTEMGLALSTFQVVL 297

Query: 274 VPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVAL 333
           +PT+VGVLANEFFPKFTSKI +VTPLIGV+LTTLLCASPIGQVS VLKTQGAQLI PVA+
Sbjct: 298 MPTIVGVLANEFFPKFTSKIAAVTPLIGVMLTTLLCASPIGQVSEVLKTQGAQLILPVAI 357

Query: 334 LHAAAFALGYWLSKISFGESTSRTISIECGMQ 365
           LH AAF +GYW+SK+SFGESTSRTISIECGMQ
Sbjct: 358 LHGAAFGIGYWISKLSFGESTSRTISIECGMQ 389

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147784076|emb|CAN76830.1| hypothetical protein VITISV_002026 [Vitis vinifera]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 284/381 (74%), Positives = 316/381 (82%), Gaps = 19/381 (4%)

Query: 1   MASMTSRFVAKNCTNLHASEASFRPTGSSILVGVAQAHLDLRGGLSAIDHGKSLAIESKP 60
           MASM SRFV K+C  L   +A + P+  S+   +    +++RGG S  + G++LAI++K 
Sbjct: 1   MASM-SRFVLKDC-KLQPFDALYGPSSCSLARRI-HTRVEVRGGCSLPEKGRNLAIQNKQ 57

Query: 61  QNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDVPSKSPGGMSQYEQIIEILTTLFPVWV 120
            + IVAL+ P SIIQ SR S +LCKAAANVSGDVP  +P GMSQYE+IIE LTTLFPVWV
Sbjct: 58  HSSIVALSGPSSIIQASRNSHILCKAAANVSGDVPGNTPAGMSQYERIIETLTTLFPVWV 117

Query: 121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQY 180
           ILGT+IGIYKP+AVTWLETDLFTI LGFLMLSMGLTLTFEDFRRCLRNPWTVG+GFLAQY
Sbjct: 118 ILGTVIGIYKPAAVTWLETDLFTICLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQY 177

Query: 181 LIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 240
           LIKPMLGF I MTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG
Sbjct: 178 LIKPMLGFFIVMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIG 237

Query: 241 AIVMTPLLTKLLAGQLVPVDAAGLAISTF---------QVVLVPTVVG-------VLANE 284
           AIVMTPLLTKLLAGQLVPVDAA +   T          Q+   P + G       VL+NE
Sbjct: 238 AIVMTPLLTKLLAGQLVPVDAAXVNGFTLEFSIPKIDDQMGWCPIIQGLAISTLPVLSNE 297

Query: 285 FFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYW 344
           FFPKFTSKI++VTPL+GVILTTLLCASPIG+VS VLKTQGAQLI PVA+LHAAAFALGYW
Sbjct: 298 FFPKFTSKIVTVTPLVGVILTTLLCASPIGKVSDVLKTQGAQLILPVAILHAAAFALGYW 357

Query: 345 LSKISFGESTSRTISIECGMQ 365
           +SKISFGESTSRTISIECGMQ
Sbjct: 358 VSKISFGESTSRTISIECGMQ 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477833|ref|XP_003609202.1| Bile acid Na+ symporter family protein [Medicago truncatula] gi|355510257|gb|AES91399.1| Bile acid Na+ symporter family protein [Medicago truncatula] gi|388502676|gb|AFK39404.1| unknown [Medicago truncatula]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/332 (81%), Positives = 300/332 (90%), Gaps = 11/332 (3%)

Query: 38  HLDLRGGLSAIDHGKSLAIESKPQ--NHIVALAA--PYSIIQNSRCSQVLCKAAANVSGD 93
           H D++      ++G++ AI S+ Q  N +VA AA  P   +++ R SQ+LC A+ N+SGD
Sbjct: 31  HFDVK------ENGRNFAIRSELQGPNPVVAAAAKLPLVHLKSKRNSQILCSASTNISGD 84

Query: 94  VPSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSM 153
           VP +S GG+SQYE+IIE LTTLFPVWVILG ++GIYKP+AVTWLETDLFT+GLGFLMLSM
Sbjct: 85  VP-ESAGGLSQYEKIIETLTTLFPVWVILGALLGIYKPAAVTWLETDLFTLGLGFLMLSM 143

Query: 154 GLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGG 213
           GLTLTF+DFRRCLRNPWTVG+GFLAQYLIKP+LGF IAMTLKLSAPLATGLILVSCCPGG
Sbjct: 144 GLTLTFDDFRRCLRNPWTVGVGFLAQYLIKPVLGFFIAMTLKLSAPLATGLILVSCCPGG 203

Query: 214 QASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVL 273
           QASNVATYISKGNVALSVLMTTCSTIGAI+MTPLLTKLLAGQLVPVDAAGLAISTFQVVL
Sbjct: 204 QASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLAISTFQVVL 263

Query: 274 VPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVAL 333
           VPT+VGVLANEFFPKFTSKII+VTPLIGVILTTLLCASPIGQV+ VLKTQGAQLI PV  
Sbjct: 264 VPTIVGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVAEVLKTQGAQLILPVLA 323

Query: 334 LHAAAFALGYWLSKISFGESTSRTISIECGMQ 365
           LHAAAFA+GYW+S+ISFGESTSRTISIECGMQ
Sbjct: 324 LHAAAFAIGYWMSRISFGESTSRTISIECGMQ 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825925|ref|XP_002880845.1| hypothetical protein ARALYDRAFT_901497 [Arabidopsis lyrata subsp. lyrata] gi|297326684|gb|EFH57104.1| hypothetical protein ARALYDRAFT_901497 [Arabidopsis lyrata subsp. lyrata]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/331 (81%), Positives = 294/331 (88%), Gaps = 8/331 (2%)

Query: 36  QAHLDLRGGLSAIDHGKSLAIE-SKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDV 94
           Q HLD    +S    G SL I+ SKP + + AL A  S        +V CKAA  VSGDV
Sbjct: 31  QTHLDYPKLVSVSKSGISLRIQNSKPISPVFALEATTS-------RRVACKAATGVSGDV 83

Query: 95  PSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMG 154
           P  +P  +SQYE+IIE+LTTLFP+WVILGT++GI+KPS VTWLETDLFT+GLGFLMLSMG
Sbjct: 84  PESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMG 143

Query: 155 LTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214
           LTLTFEDFRRCLRNPWTVG+GFLAQY+IKP+LGF+IAMTLKLSAPLATGLILVSCCPGGQ
Sbjct: 144 LTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQ 203

Query: 215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLV 274
           ASNVATYISKGNVALSVLMTTCSTIGAI+MTPLLTKLLAGQLVPVDAAGLA+STFQVVLV
Sbjct: 204 ASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLAVSTFQVVLV 263

Query: 275 PTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALL 334
           PT+VGVLANEFFPKFTSKII+VTPLIGVILTTLLCASPIGQVS VLKTQGAQLI PVALL
Sbjct: 264 PTIVGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVSEVLKTQGAQLILPVALL 323

Query: 335 HAAAFALGYWLSKISFGESTSRTISIECGMQ 365
           HAAAFA+GYW+SK SFGESTSRTISIECGMQ
Sbjct: 324 HAAAFAIGYWISKFSFGESTSRTISIECGMQ 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683305|ref|NP_850089.1| Sodium bile acid symporter-like protein [Arabidopsis thaliana] gi|122178084|sp|Q1EBV7.1|BASS2_ARATH RecName: Full=Sodium/pyruvate cotransporter BASS2, chloroplastic; AltName: Full=Bile acid transporter 1; AltName: Full=Bile acid-sodium symporter family protein 2; Flags: Precursor gi|109134135|gb|ABG25066.1| At2g26900 [Arabidopsis thaliana] gi|330252811|gb|AEC07905.1| Sodium bile acid symporter-like protein [Arabidopsis thaliana]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/331 (80%), Positives = 297/331 (89%), Gaps = 8/331 (2%)

Query: 36  QAHLDLRGGLSAIDHGKSLAIE-SKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDV 94
           Q HLD    +S  + G SL I+ SKP + + AL A  S        +V+CKAAA VSGD+
Sbjct: 31  QTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEATSS-------RRVVCKAAAGVSGDL 83

Query: 95  PSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMG 154
           P  +P  +SQYE+IIE+LTTLFP+WVILGT++GI+KPS VTWLETDLFT+GLGFLMLSMG
Sbjct: 84  PESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMG 143

Query: 155 LTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214
           LTLTFEDFRRCLRNPWTVG+GFLAQY+IKP+LGF+IAMTLKLSAPLATGLILVSCCPGGQ
Sbjct: 144 LTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQ 203

Query: 215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLV 274
           ASNVATYISKGNVALSVLMTTCSTIGAI+MTPLLTKLLAGQLVPVDAAGLA+STFQVVLV
Sbjct: 204 ASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLV 263

Query: 275 PTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALL 334
           PT++GVLANEFFPKFTSKII+VTPLIGVILTTLLCASPIGQV+ VLKTQGAQLI PVALL
Sbjct: 264 PTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQGAQLILPVALL 323

Query: 335 HAAAFALGYWLSKISFGESTSRTISIECGMQ 365
           HAAAFA+GYW+SK SFGESTSRTISIECGMQ
Sbjct: 324 HAAAFAIGYWISKFSFGESTSRTISIECGMQ 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20269901|gb|AAM18095.1|AF498303_1 putative sodium-dependent bile acid symporter [Arabidopsis thaliana]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/331 (80%), Positives = 297/331 (89%), Gaps = 8/331 (2%)

Query: 36  QAHLDLRGGLSAIDHGKSLAIE-SKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDV 94
           Q HLD    +S  + G SL I+ SKP + + AL A  S        +V+CKAAA VSGD+
Sbjct: 31  QTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEATSS-------RRVVCKAAAGVSGDL 83

Query: 95  PSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMG 154
           P  +P  +SQYE+IIE+LTTLFP+WVILGT++GI+KPS VTWLETDLF++GLGFLMLSMG
Sbjct: 84  PESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFSLGLGFLMLSMG 143

Query: 155 LTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214
           LTLTFEDFRRCLRNPWTVG+GFLAQY+IKP+LGF+IAMTLKLSAPLATGLILVSCCPGGQ
Sbjct: 144 LTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQ 203

Query: 215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLV 274
           ASNVATYISKGNVALSVLMTTCSTIGAI+MTPLLTKLLAGQLVPVDAAGLA+STFQVVLV
Sbjct: 204 ASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLV 263

Query: 275 PTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALL 334
           PT++GVLANEFFPKFTSKII+VTPLIGVILTTLLCASPIGQV+ VLKTQGAQLI PVALL
Sbjct: 264 PTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQGAQLILPVALL 323

Query: 335 HAAAFALGYWLSKISFGESTSRTISIECGMQ 365
           HAAAFA+GYW+SK SFGESTSRTISIECGMQ
Sbjct: 324 HAAAFAIGYWISKFSFGESTSRTISIECGMQ 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	377
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.856	0.789	0.788	3.4e-132
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.729	0.685	0.418	4.8e-55
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.671	0.587	0.365	1.9e-42
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.697	0.816	0.373	1.6e-38
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.718	0.662	0.322	1.6e-38
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	0.716	0.663	0.331	1.1e-37
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.663	0.811	0.297	1.4e-30
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.663	0.811	0.297	1.4e-30
UNIPROTKB|E1BSN2	359	SLC10A2 "Uncharacterized prote	0.572	0.601	0.294	1.1e-23
UNIPROTKB|F6PLG8	305	SLC10A2 "Uncharacterized prote	0.549	0.678	0.324	2.3e-23

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 261/331 (78%), Positives = 289/331 (87%)

Query:    36 QAHLDLRGGLSAIDHGKSLAIE-SKPQNHIVALAAPYSIIQNSRCSQVLCKAAANVSGDV 94
             Q HLD    +S  + G SL I+ SKP + + AL A      +SR  +V+CKAAA VSGD+
Sbjct:    31 QTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEAT-----SSR--RVVCKAAAGVSGDL 83

Query:    95 PSKSPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMG 154
             P  +P  +SQYE+IIE+LTTLFP+WVILGT++GI+KPS VTWLETDLFT+GLGFLMLSMG
Sbjct:    84 PESTPKELSQYEKIIELLTTLFPLWVILGTLVGIFKPSLVTWLETDLFTLGLGFLMLSMG 143

Query:   155 LTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ 214
             LTLTFEDFRRCLRNPWTVG+GFLAQY+IKP+LGF+IAMTLKLSAPLATGLILVSCCPGGQ
Sbjct:   144 LTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFLIAMTLKLSAPLATGLILVSCCPGGQ 203

Query:   215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXX 274
             ASNVATYISKGNVALSVLMTTCSTIGAI+MTPLLTKLLAGQLVPVDAAGLA+STFQ    
Sbjct:   204 ASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLV 263

Query:   275 XXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALL 334
                   LANEFFPKFTSKII+VTPLIGVILTTLLCASPIGQV+ VLKTQGAQLI PVALL
Sbjct:   264 PTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVADVLKTQGAQLILPVALL 323

Query:   335 HAAAFALGYWLSKISFGESTSRTISIECGMQ 365
             HAAAFA+GYW+SK SFGESTSRTISIECGMQ
Sbjct:   324 HAAAFAIGYWISKFSFGESTSRTISIECGMQ 354

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 116/277 (41%), Positives = 161/277 (58%)

Query:    91 SGDVPSKSPGGMSQYEQII-EILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFL 149
             S D+P++      ++ + + E ++T FP+WV LG ++G+ +PS   W+  +   +GL   
Sbjct:    75 SNDLPTEKKKSFGEWVEFVGEAVSTAFPIWVSLGCLLGLMRPSTFNWVTPNWTIVGLTIT 134

Query:   150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSC 209
             ML MG+TLT +D R  L  P  +  GFL QY + P+  F ++  L L    A GLILV C
Sbjct:   135 MLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMPLSAFFVSKLLNLPPHYAAGLILVGC 194

Query:   210 CPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTF 269
             CPGG ASN+ TYI++GNVALSVLMT  ST+ A++MTPLLT  LA Q + VDA GL +ST 
Sbjct:   195 CPGGTASNIVTYIARGNVALSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTL 254

Query:   270 QXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIF 329
             Q            N++F K    +  V P I V    +LC   IGQ ++ +   G Q++ 
Sbjct:   255 QVVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASAILMSGKQVVL 314

Query:   330 PVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQ 365
                LLH + F  GY  S+I     ++SRTISIE GMQ
Sbjct:   315 ASCLLHISGFLFGYLFSRILGIDVASSRTISIEVGMQ 351

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 94/257 (36%), Positives = 144/257 (56%)

Query:   113 TTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTV 172
             + L P  V L  +  +  P + TW+  DL+   LG +MLS+G+ L+ +DF    + P  +
Sbjct:   112 SALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPL 171

Query:   173 GIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVL 232
              +GF+AQY++KP+LG ++A    +      G IL  C  G Q S+ A+ +SK +VA+S+L
Sbjct:   172 SVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVAMSIL 231

Query:   233 MTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSK 292
             +T+ +TI +++ TPLL+ LL G +VPVDA  ++ S  Q          + N +     + 
Sbjct:   232 LTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTL 291

Query:   293 IISVTPLIGVILTTLLCASPIG-QVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISF- 350
             +  V P + ++ T+L   SP+    S +L  +G  LI P+   HA AFALGYW SKI   
Sbjct:   292 LQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGL 351

Query:   351 --GESTSRTISIECGMQ 365
                E  SRTIS+  GMQ
Sbjct:   352 RQEEEVSRTISLCTGMQ 368

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 99/265 (37%), Positives = 144/265 (54%)

Query:   102 MSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFED 161
             M   E I  I    F  WVI    I  + P+    L + + TI LG +M  MGLTL   D
Sbjct:     1 MKVLEAISNIAGKYFAFWVICIATIAYFIPAPFLGLNSYI-TILLGVVMFGMGLTLKAVD 59

Query:   162 FRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATY 221
             F+     P  V IG  AQ++I P++ +V+A  + L A LA GL+L+   PGG ASNV  Y
Sbjct:    60 FKIIATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMVY 119

Query:   222 ISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXXXXXXXXL 281
             ++KGN+ALS+ MT+ ST+ A + TPL+  LLAGQ +PV+   + +S  Q          +
Sbjct:   120 LAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLV 179

Query:   282 ANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFAL 341
               +FFPK  +K ++V P I V+   ++ ++ +    + + + G  ++  V L +A  F L
Sbjct:   180 VKKFFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITSSGLLILIAVMLHNAFGFLL 239

Query:   342 GYWLSKI-SFGESTSRTISIECGMQ 365
             GY  + I    E T R ISIE GMQ
Sbjct:   240 GYITAFILKLDEGTRRAISIEVGMQ 264

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 92/285 (32%), Positives = 158/285 (55%)

Query:    95 PSKSPGGMSQYEQIIEIL---TTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLML 151
             P   P  + +   I++ +    ++ P  V+  TI+ +  P + TW  +  F   LGFLM 
Sbjct:    77 PGADPFKVIEKPSIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSRYFVPALGFLMF 136

Query:   152 SMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI---AMTL-KLSAPLATGLILV 207
             ++G+    +DF    + P  + +G++ QYL+KP+LGF+    A++L +L  P+  G++LV
Sbjct:   137 AVGINSNEKDFLEAFKRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIMLV 196

Query:   208 SCCPGGQASNVATYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAI 266
             SC  G Q SN AT+++   +A LS++MT+ ST  A+++TP+L+ LL G+ +PVD  G+  
Sbjct:   197 SCVSGAQLSNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMIS 256

Query:   267 STFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIG-QVSAVLKTQGA 325
             S  Q          L N+ FPK ++ I    P++ V+ T     +P+   +++V+   GA
Sbjct:   257 SILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILSVLDTACCVGAPLALNINSVMSPFGA 316

Query:   326 QLIFPVALLHAAAFALGYWLSKISF-----GESTSRTISIECGMQ 365
              ++  V + H +AF  GY+L+   F      ++  RT+S E GMQ
Sbjct:   317 TILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGMQ 361

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 95/287 (33%), Positives = 154/287 (53%)

Query:    96 SKSPGGMSQYEQIIEILTTL------FPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFL 149
             S+S      ++++  I+ TL       P  ++L TI+ +  P + TW +   F  GLGF+
Sbjct:    76 SESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPPSFTWFKPRYFVPGLGFM 135

Query:   150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGF---VIAMTL-KLSAPLATGLI 205
             M ++G+     DF   L+ P  +  G++ QYLIKP+LG+   VIA++L  L   +  G++
Sbjct:   136 MFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPTSIGAGIM 195

Query:   206 LVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGL 264
             LVSC  G Q SN  T+++  ++A LS++MT+ ST  A+++TP+L+ LL G+ +PVD  G+
Sbjct:   196 LVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKLPVDVFGM 255

Query:   265 AISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIG-QVSAVLKTQ 323
               S  Q          L N  FP+ ++ I    P + VI  +    +P+   + ++L   
Sbjct:   256 ISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSCCIGAPLALNIDSILSPF 315

Query:   324 GAQLIFPVALLHAAAFALGYWLSKISFGESTS-----RTISIECGMQ 365
             GA ++F V   H  AF  GY+ +   F ++       RTIS E GMQ
Sbjct:   316 GATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQ 362

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 75/252 (29%), Positives = 126/252 (50%)

Query:   115 LFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGI 174
             LFP++ +LG +     P+     +  +  + L  +MLSMGLTL  +DF    +    V  
Sbjct:     7 LFPLFALLGAVTAYLMPAWFVVFKNSIVPL-LVVIMLSMGLTLDLQDFANAFKQKRAVIT 65

Query:   175 GFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMT 234
             G + Q+ + P+    I++ L L   L  G++LV    GG ASNV  Y++KG+VALS+ MT
Sbjct:    66 GLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALSITMT 125

Query:   235 TCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKII 294
               ST+  +V+TPL+ +LL G++V +    + +S  +          + N FF    +K+ 
Sbjct:   126 ALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQVAKLS 185

Query:   295 SVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGES 353
                PLI ++   +  +  +   +      G  ++  V L +     LGY   ++  F  +
Sbjct:   186 PALPLISIVAIVMAISIIVALNAGQFAQVGPVILLAVFLHNGLGLTLGYLCCRLLGFSHT 245

Query:   354 TSRTISIECGMQ 365
               +TISIE G+Q
Sbjct:   246 VCKTISIEVGLQ 257

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 75/252 (29%), Positives = 126/252 (50%)

Query:   115 LFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGI 174
             LFP++ +LG +     P+     +  +  + L  +MLSMGLTL  +DF    +    V  
Sbjct:     7 LFPLFALLGAVTAYLMPAWFVVFKNSIVPL-LVVIMLSMGLTLDLQDFANAFKQKRAVIT 65

Query:   175 GFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMT 234
             G + Q+ + P+    I++ L L   L  G++LV    GG ASNV  Y++KG+VALS+ MT
Sbjct:    66 GLILQFTLMPLSALAISLLLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVALSITMT 125

Query:   235 TCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKII 294
               ST+  +V+TPL+ +LL G++V +    + +S  +          + N FF    +K+ 
Sbjct:   126 ALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQVAKLS 185

Query:   295 SVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGES 353
                PLI ++   +  +  +   +      G  ++  V L +     LGY   ++  F  +
Sbjct:   186 PALPLISIVAIVMAISIIVALNAGQFAQVGPVILLAVFLHNGLGLTLGYLCCRLLGFSHT 245

Query:   354 TSRTISIECGMQ 365
               +TISIE G+Q
Sbjct:   246 VCKTISIEVGLQ 257

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

UNIPROTKB|E1BSN2 SLC10A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 70/238 (29%), Positives = 122/238 (51%)

Query:   141 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPL 200
             + TI L  +M SMG  +  + F   ++ PW + +GFL Q+ I P+  F++++   +    
Sbjct:    47 VLTIMLALVMFSMGCNVEIKKFLHHIKRPWGIFVGFLCQFGIMPLTAFLLSLAFDVHPIQ 106

Query:   201 ATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL----TKLLAGQ- 255
             A  ++++ CCPGG ASN+  Y   G++ LS+ MTTCST+ A+ M PL     TK+     
Sbjct:   107 AVVVMIMGCCPGGTASNIIAYWVDGDMDLSISMTTCSTLLAMGMMPLCLFVYTKMWTDSD 166

Query:   256 --LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPI 313
               ++P D+ G+++                N  +P    +I+ V  + G IL  +      
Sbjct:   167 AIVLPYDSIGISLVAL---VVPVSVGVFVNHKWPSKAKRILKVGSIAGAILIVITAV--- 220

Query:   314 GQVSAVLKTQGAQLIFPV-----ALLHAAAFALGYWLSKIS-FGESTSRTISIECGMQ 365
               V  +L  +G+ +I P       +  AA ++LG++L++++    S  RT+S+E GMQ
Sbjct:   221 --VGGILY-KGSWVITPKLWIIGTIFPAAGYSLGFFLARLAGLSWSRCRTVSLETGMQ 275

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6PLG8 SLC10A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 75/231 (32%), Positives = 120/231 (51%)

Query:   149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVS 208
             +M SMG  +  + F   ++ PW + +GFL Q+ I P+ GF++++   +    A  ++++ 
Sbjct:     2 VMFSMGCNVEIKKFLGHIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIMG 61

Query:   209 CCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLL----TKLL--AGQLV-PVDA 261
             CCPGG ASN+  Y   G++ LS+ MTTCST+ A+ M PL     TK+   +G +V P D 
Sbjct:    62 CCPGGTASNILAYWVDGDMDLSISMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPFDN 121

Query:   262 AGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLK 321
              G ++              L N  +P+    I+ V  + G IL  L+       V  +L 
Sbjct:   122 IGTSLVAL---VVPVSIGMLVNHKWPQKAKIILKVGSITGAILIVLIAV-----VGGILY 173

Query:   322 TQGAQLIFPV-----ALLHAAAFALGYWLSKISFGES--TSRTISIECGMQ 365
              Q A +I P       L   A ++LG+ L++IS G+S    RT+++E GMQ
Sbjct:   174 -QSAWIIAPKLWIIGTLFPLAGYSLGFLLARIS-GQSWHRCRTVALETGMQ 222

GO:0016021 "integral to membrane" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1EBV7	BASS2_ARATH	No assigned EC number	0.8096	0.8567	0.7897	yes	no
Q5VRB2	BASS2_ORYSJ	No assigned EC number	0.8685	0.7639	0.6873	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016816001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (417 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	377
TIGR00841	286	TIGR00841, bass, bile acid transporter	9e-82
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	4e-58
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	1e-48
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	2e-12
COG0798	342	COG0798, ACR3, Arsenite efflux pump ACR3 and relat	9e-08
TIGR00832	328	TIGR00832, acr3, arsenical-resistance protein	7e-07
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	3e-04

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  251 bits (642), Expect = 9e-82
 Identities = 106/237 (44%), Positives = 137/237 (57%), Gaps = 8/237 (3%)

Query: 134 VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMT 193
            T L T L  + L  +M SMG TL FEDF+  LR PW V IG LAQY I P+ GF++A  
Sbjct: 3   STNLSTILLIL-LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV 61

Query: 194 LKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA 253
            KL   LA G+++V CCPGG ASNV TY+ KG++ALS+ MTTCST+ A+ M PLL  + A
Sbjct: 62  FKLPPELAVGVLIVGCCPGGTASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYA 121

Query: 254 GQLVP----VDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLC 309
              V     V   G+ +S   +VL+P  +G+L     P+  +KII    LI V L +++ 
Sbjct: 122 KMWVDGTLVVPYLGIGLS-LVIVLIPVSIGMLVKHKLPQI-AKIILKVGLISVFLLSVII 179

Query: 310 ASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKISFGES-TSRTISIECGMQ 365
           A   G     L T G  L+    LL  A F LGY L+K++       RTISIE GMQ
Sbjct: 180 AVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQ 236

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  191 bits (487), Expect = 4e-58
 Identities = 95/256 (37%), Positives = 136/256 (53%), Gaps = 2/256 (0%)

Query: 111 ILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPW 170
               +F +WV+L   I    P    WL +    I L  +M  MGLTL+ EDF   L++P 
Sbjct: 10  DPFKIFLLWVVLLAAIAPIFPETFGWLGS-AIPIALALIMFGMGLTLSREDFLAGLKHPR 68

Query: 171 TVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALS 230
            V IG  AQ+++ P+L  ++A    L   LA GL+L+ CCPGG ASN  TY++KGNVALS
Sbjct: 69  LVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALS 128

Query: 231 VLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFT 290
           V  T+ ST+    +TPLL  LLAG  VPVD  G+ +S    VL+P V+G L     PK+ 
Sbjct: 129 VCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWV 188

Query: 291 SKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-S 349
            ++    P + V+   L+  +            G  +   V L +     LGY+ +++  
Sbjct: 189 ERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLLG 248

Query: 350 FGESTSRTISIECGMQ 365
           F ++   TI+IE GMQ
Sbjct: 249 FDKADEITIAIEGGMQ 264

Length = 319

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  162 bits (412), Expect = 1e-48
 Identities = 74/184 (40%), Positives = 108/184 (58%), Gaps = 10/184 (5%)

Query: 143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP-LA 201
            +GL  +M SMGL + +EDF+   R P  + +G L Q++I P+L F++A  L    P LA
Sbjct: 1   PLGLFLMMFSMGLKVRYEDFKELFRRPKALLLGLLLQWVIMPLLMFILAWFLLRLPPELA 60

Query: 202 TGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDA 261
            GLILV C PGG  SNV TY++KG+V LSV+M   ST+ A ++TPLL+ LL+G L+ V  
Sbjct: 61  VGLILVGCAPGGAMSNVWTYLAKGDVELSVVMVALSTLTAPLVTPLLSFLLSGLLLDVGT 120

Query: 262 A----GLAISTFQVVLVPTVVGVLANEFFPK-----FTSKIISVTPLIGVILTTLLCASP 312
           A     L  S    V++P + G+L   F P+         ++    LIG++LT ++  S 
Sbjct: 121 AVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLTIVVIFSL 180

Query: 313 IGQV 316
            G+V
Sbjct: 181 KGEV 184

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 65/260 (25%), Positives = 108/260 (41%), Gaps = 21/260 (8%)

Query: 111 ILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPW 170
           +L +LFPV    G   G  +   VT      + + L F +   GL L+ E+    LRN  
Sbjct: 12  LLASLFPV---PGAAGGPIRAEYVTT-----YAVALIFFL--SGLKLSTEELLAGLRNWR 61

Query: 171 TVGIGFLAQYLIKPMLGFVIAMTLK--LSAPLATGLILVSCCPGGQASNVA-TYISKGNV 227
                 L  +++ P+LG  ++  L   L   L  G + ++  P   +S+VA T  + GNV
Sbjct: 62  LHLFVQLFTFVLFPLLGLGLSPLLPAALPPELLLGFLFLAALPTTVSSSVAMTSQAGGNV 121

Query: 228 ALSVLMTTCSTIGAIVMTPLLTKLL-AGQLVPVDAAGLAISTFQVVLVPTVVGVLANEFF 286
           A +V   + S +  + +TPLL  LL  G    VD   +       +L+P V+G L    F
Sbjct: 122 AAAVCSASISNLLGVFLTPLLVGLLLGGGGGGVDLGAVLKKLLLQLLLPFVLGQLLRPLF 181

Query: 287 PKFTSKIISVTPLI--GVILTTLLCASPIGQVSAVLKTQG----AQLIFPVALLHAAAFA 340
           PK+ ++   +   +    IL  +  A     V  +  +        +     LL      
Sbjct: 182 PKWVARHKKLLKKVDRSSILLIVYTAFSTAFVEGIWHSVSHSILLVIFALGLLLLFVVLV 241

Query: 341 LGYWLSKISFGESTSRTISI 360
           L  + +++  G S    I+I
Sbjct: 242 LTTFAARL-LGFSREDRIAI 260

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

>gnl|CDD|223869 COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 59/262 (22%), Positives = 110/262 (41%), Gaps = 22/262 (8%)

Query: 108 IIEILTTLFPVWVIL----GTIIGIYKPSAVTWLETDLF-------TIGLGFLMLSMGLT 156
            +  L     +WV L    G ++G++ P     L    F        IGL  +M    L 
Sbjct: 8   KLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLK 67

Query: 157 LTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA-MTLKLSAPLATGLILVSCCPGGQA 215
           + FE+ +   ++P  + +     ++I P+L F +A   L        GLIL+   P    
Sbjct: 68  IDFEELKNVFKDPKPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAM 127

Query: 216 SNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQL-VPVDAAGLAISTFQVVLV 274
             V + ++KG+  L++++   +++  IV+   L K   G + + V    +A S    + +
Sbjct: 128 VIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGI 187

Query: 275 PTVVGVLANEFFPK------FTSKI---ISVTPLIGVILTTLLCASPIGQVSAVLKTQGA 325
           P + GVL      K      + S+    IS   LIG++LT +L  +  G+          
Sbjct: 188 PLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDIL 247

Query: 326 QLIFPVALLHAAAFALGYWLSK 347
            +  P+ +     F + Y+++K
Sbjct: 248 LIAIPLLIYFLLMFFISYFIAK 269

Length = 342

>gnl|CDD|213563 TIGR00832, acr3, arsenical-resistance protein

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 51/260 (19%), Positives = 98/260 (37%), Gaps = 29/260 (11%)

Query: 117 PVWVIL----GTIIGIYKPSAVTWLETDLF-------TIGLGFLMLSMGLTLTFEDFRRC 165
            +W+ L    G  +G+  PS    L             IGL  +M      + +      
Sbjct: 9   TLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDV 68

Query: 166 LRNPWTVGIGFLAQYLIKPMLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVATYISK 224
            ++P  + +     ++I P L F++A + L+       GLIL+          V   ++K
Sbjct: 69  FKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAK 128

Query: 225 GNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVP--------VDAAGLAISTFQVVLVPT 276
           G+   ++++   +++  + +   L  LL G            V    +A S    + +P 
Sbjct: 129 GDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPL 188

Query: 277 VVGVL---------ANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQL 327
           + G+L           E++ K     IS   LI ++ T +L  +  G+    L    A +
Sbjct: 189 IAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALI 248

Query: 328 IFPVALLHAAAFALGYWLSK 347
             P+ +     F L + L+K
Sbjct: 249 AIPLLIYFYIMFFLTFALAK 268

The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport [Cellular processes, Detoxification, Transport and binding proteins, Anions]. Length = 328

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSC 209
           ++++GL+L F   +     P  + I    + L+ P++  ++A  L LS      L+L+S 
Sbjct: 207 LIALGLSLAFLKLKG--SKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSA 264

Query: 210 CPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQL 256
            P    + V      G+  L+      ST+ +++  PLL  LL   L
Sbjct: 265 MPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLLRSL 311

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	377
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.97
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.96
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	99.29
PRK09903	314	putative transporter YfdV; Provisional	99.24
COG0679	311	Predicted permeases [General function prediction o	99.06
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	98.9
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	98.87
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	98.21
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	97.91
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.6
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.44
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	97.38
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	97.02
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	97.01
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.97
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	96.3
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.2
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.15
PRK05326	562	potassium/proton antiporter; Reviewed	95.89
TIGR00698	335	conserved hypothetical integral membrane protein.	95.68
PRK10669	558	putative cation:proton antiport protein; Provision	95.25
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	95.22
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	95.21
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	94.98
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	94.96
COG2855	334	Predicted membrane protein [Function unknown]	94.85
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	94.75
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	94.58
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	94.47
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	94.13
PRK04288	232	antiholin-like protein LrgB; Provisional	93.96
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	93.47
PLN03159	832	cation/H(+) antiporter 15; Provisional	93.38
PRK10711	231	hypothetical protein; Provisional	93.34
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	92.64
TIGR01109	354	Na_pump_decarbB sodium ion-translocating decarboxy	91.1
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	90.58
PRK15477	433	oxaloacetate decarboxylase subunit beta; Provision	90.49
PRK15476	433	oxaloacetate decarboxylase subunit beta; Provision	90.45
PRK15475	433	oxaloacetate decarboxylase subunit beta; Provision	90.39
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	90.1
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	90.09
PRK03562	621	glutathione-regulated potassium-efflux system prot	88.29
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	88.07
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	86.62
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	86.5
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	86.13
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	85.8
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	84.76
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	84.46
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	83.93
PRK03659	601	glutathione-regulated potassium-efflux system prot	83.09
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	82.82
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	82.34
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	80.73
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	80.66
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	80.64

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=9.3e-47  Score=366.11  Aligned_cols=266  Identities=36%  Similarity=0.569  Sum_probs=254.4

Q ss_pred             HHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 017082          110 EILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFV  189 (377)
Q Consensus       110 ~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~  189 (377)
                      .+....+++|+++...++...|+.+.|++ .+++.+++++||.+|++++.+|+++..+|||.+++++++||++||+++++
T Consensus         9 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~   87 (319)
T COG0385           9 RDPFKIFLLWVVLLAAIAPIFPETFGWLG-SAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALL   87 (319)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccccchhhh-HHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            45567799999999999999999999997 68899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHHHH
Q 017082          190 IAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTF  269 (377)
Q Consensus       190 l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~vd~~~i~~~Ll  269 (377)
                      +++.++++|+++.|+++++|||+|+.||+||+++|||+++|+.++.+||+++++++|+++.++.|+.+++|.++++++++
T Consensus        88 ~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~  167 (319)
T COG0385          88 LAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSIL  167 (319)
T ss_pred             HHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhc-
Q 017082          270 QVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-  348 (377)
Q Consensus       270 ~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~l~r~-  348 (377)
                      +.+++|+++|+++|+++|++.++.+|.++.++...+.++++...+.+.+...+.+..+.+.+.+++.++|.+||+.+|+ 
T Consensus       168 ~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~  247 (319)
T COG0385         168 LQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLL  247 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998888888888888777777777888899999999999999999 


Q ss_pred             CCCccceeeeeeecccccHHHHHHHHhc
Q 017082          349 SFGESTSRTISIECGMQVCICFVSIFVN  376 (377)
Q Consensus       349 ~~~~~~~rtlsi~~G~qN~~LAl~lA~~  376 (377)
                      |+|++|++|+++|+||||.++++++|..
T Consensus       248 g~~~a~~iti~ie~g~qn~~lg~alA~~  275 (319)
T COG0385         248 GFDKADEITIAIEGGMQNLGLGAALAAA  275 (319)
T ss_pred             CCChhheeeEEEeeccccHHHHHHHHHh
Confidence            9999999999999999999999999863

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=1.2e-43  Score=350.20  Aligned_cols=271  Identities=16%  Similarity=0.222  Sum_probs=237.2

Q ss_pred             cHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHh-------HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHH
Q 017082          103 SQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETD-------LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIG  175 (377)
Q Consensus       103 ~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~-------~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~  175 (377)
                      ++.||+.   ..++...+++|+++|+..|..+.|++..       ...+.++++||++|++++.+|+++.+||||.+..+
T Consensus         2 ~~~~~~~---~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~   78 (328)
T TIGR00832         2 SLLERYL---TLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILS   78 (328)
T ss_pred             chHHHHH---HHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHH
Confidence            3445554   7788888888999999999998887532       13456778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017082          176 FLAQYLIKPMLGFVIAMTL-KLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAG  254 (377)
Q Consensus       176 lv~~~vl~Pll~~~l~~~~-~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g  254 (377)
                      ++.||+++|+++|++++++ +++++++.|+++++|||||++||+||+++|||+++|+.+|.++|+++++++|+++.++.|
T Consensus        79 ~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~  158 (328)
T TIGR00832        79 LFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLG  158 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999975 899999999999999999999999999999999999999999999999999999988876


Q ss_pred             --------cccccChHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHH-HHhhhhhHHHHHHHHHHHHhhhhhhhhHH
Q 017082          255 --------QLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPK-----FTS-KIISVTPLIGVILTTLLCASPIGQVSAVL  320 (377)
Q Consensus       255 --------~~v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~-----~~~-~i~~~~~~is~l~llvli~~~i~~~~~~l  320 (377)
                              +.+++|..+++++++.++++|+++|+++|++.++     +.+ +..+..+.++.+.+..+++...+.+.+.+
T Consensus       159 ~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i  238 (328)
T TIGR00832       159 VSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETI  238 (328)
T ss_pred             cCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence                    4578999999999999999999999999999984     333 66666777777777666677777777777


Q ss_pred             hhhchhH---HHHHHHHHHHHHHHHHHHhhc-CCCccceeeeeeecccccHHHHHHHHhc
Q 017082          321 KTQGAQL---IFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQVCICFVSIFVN  376 (377)
Q Consensus       321 ~~~~~~i---~~~~~ll~~~gf~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~~  376 (377)
                      .+.+..+   ..++++++..+|.+||+++|. |++++|+||+++|+|+||+++|+.+|..
T Consensus       239 ~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~  298 (328)
T TIGR00832       239 IELPLDIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAIS  298 (328)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHH
Confidence            6665433   346778999999999999999 9999999999999999999999999974

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=1.3e-38  Score=309.11  Aligned_cols=239  Identities=44%  Similarity=0.649  Sum_probs=219.6

Q ss_pred             hhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchh
Q 017082          135 TWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQ  214 (377)
Q Consensus       135 ~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~  214 (377)
                      ++++ ....+.++++||.+|++++.+|+++.++|||.+..+++.|++++|+++|++++.++++++++.|+++++||||+.
T Consensus         4 ~~~~-~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~   82 (286)
T TIGR00841         4 TNLS-TILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGT   82 (286)
T ss_pred             hhHH-HHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCch
Confidence            3444 445555999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCcccc----cChHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 017082          215 ASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVP----VDAAGLAISTFQVVLVPTVVGVLANEFFPKFT  290 (377)
Q Consensus       215 ~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~----vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~  290 (377)
                      ++++||+++|||.++++.+++++|+++++++|+++.++.++.++    +|+.+++.+ +.++++|+++|+++|+++|++.
T Consensus        83 ~s~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~  161 (286)
T TIGR00841        83 ASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIA  161 (286)
T ss_pred             HHHHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999998765444    999999999 9999999999999999999998


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHHHhhc-CCCccceeeeeeecccccHHH
Q 017082          291 SKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQVCIC  369 (377)
Q Consensus       291 ~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~L  369 (377)
                      ++.++ .+.++.+.+.++++...+.+.+.+.+..+.++.++++++.++|.+||+.+|. |++++++||+++|+|+||+++
T Consensus       162 ~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~l  240 (286)
T TIGR00841       162 KIILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQL  240 (286)
T ss_pred             HHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHH
Confidence            88888 7888888777777777777878888888888888999999999999999998 999999999999999999999


Q ss_pred             HHHHHhc
Q 017082          370 FVSIFVN  376 (377)
Q Consensus       370 Al~lA~~  376 (377)
                      |+++|..
T Consensus       241 al~la~~  247 (286)
T TIGR00841       241 CSTIAQL  247 (286)
T ss_pred             HHHHHHH
Confidence            9999863

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=3.2e-33  Score=274.45  Aligned_cols=263  Identities=23%  Similarity=0.359  Sum_probs=231.9

Q ss_pred             hHHHHHHHHHHHHHHhccchhh---hhh-HhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 017082          114 TLFPVWVILGTIIGIYKPSAVT---WLE-TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFV  189 (377)
Q Consensus       114 ~~~~l~vilgvllg~~~P~~~~---~l~-~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~  189 (377)
                      +||++.+++++++|+..|+.+.   +++ +....+++++++|..|++++.+|+++..+|||.+..++..+|+++|+++++
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999765   343 246678899999999999999999999999999999999999999999999


Q ss_pred             HHHHh--CCChhhhhhhhhcccCCchhHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc-CcccccChHHHH
Q 017082          190 IAMTL--KLSAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA-GQLVPVDAAGLA  265 (377)
Q Consensus       190 l~~~~--~l~~~l~~GliLlaa~P~~~~s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~-g~~v~vd~~~i~  265 (377)
                      +..++  ..++++..|+++++|+|++..|+ +||+++|||.+.++..+.++|+++++++|+++.++. ++.+++|..+++
T Consensus        81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~  160 (313)
T PF13593_consen   81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL  160 (313)
T ss_pred             HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence            99888  46889999999999999998887 699999999999999999999999999999999998 788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhh--hhHHhhhch----hHHHHHHHHHHHHH
Q 017082          266 ISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQV--SAVLKTQGA----QLIFPVALLHAAAF  339 (377)
Q Consensus       266 ~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~--~~~l~~~~~----~i~~~~~ll~~~gf  339 (377)
                      .++...+++|+++|+++|++++++.+|+++.++.++...++.+++...+..  .+.+.+...    .+....+.++...+
T Consensus       161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  240 (313)
T PF13593_consen  161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL  240 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998777776666555443  333332222    23345677888999


Q ss_pred             HHHHHHhhc-CCCccceeeeeeecccccHHHHHHHHhc
Q 017082          340 ALGYWLSKI-SFGESTSRTISIECGMQVCICFVSIFVN  376 (377)
Q Consensus       340 ~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~~  376 (377)
                      .++|+.+|. +++++|++++.+.+++||..+++.++..
T Consensus       241 ~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~  278 (313)
T PF13593_consen  241 VLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASI  278 (313)
T ss_pred             HHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHH
Confidence            999999999 9999999999999999999999998863

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-32  Score=266.84  Aligned_cols=276  Identities=19%  Similarity=0.304  Sum_probs=239.1

Q ss_pred             CCCCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhH-------hHHHHHHHHHHHHhcccCChHHHHHHhcCCh
Q 017082           98 SPGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLET-------DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPW  170 (377)
Q Consensus        98 ~~~~~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~-------~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk  170 (377)
                      +.++++++||++   +.|..+++++|+.+|..+|+.++.++.       ..+++++.+||+.+.++++++++++..+|+|
T Consensus         5 ~~k~l~~~dk~l---~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k   81 (342)
T COG0798           5 EKKKLSFLDKYL---TLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPK   81 (342)
T ss_pred             HhhhhhHHHHHH---HHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcch
Confidence            445688888888   888999999999999999997665542       4778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 017082          171 TVGIGFLAQYLIKPMLGFVIAMTL-KLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLT  249 (377)
Q Consensus       171 ~l~~~lv~~~vl~Pll~~~l~~~~-~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l  249 (377)
                      .+.++++.|+++.|+++|+++++| +..|++.+|+++++.+||..++.+|+++++||.+++...+.++.++++++.|.+.
T Consensus        82 ~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~  161 (342)
T COG0798          82 PLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG  161 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986 5677899999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCcc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHhhhhhHH---HHHHHHHHHHhhhhhhhhH
Q 017082          250 KLLAGQL-VPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF------TSKIISVTPLI---GVILTTLLCASPIGQVSAV  319 (377)
Q Consensus       250 ~ll~g~~-v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~------~~~i~~~~~~i---s~l~llvli~~~i~~~~~~  319 (377)
                      +++.|.. ++++.+++.++++.++.+|+++|++.|++..++      -+++.|..+.+   +.+.+++++++..|+..-.
T Consensus       162 ~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~  241 (342)
T COG0798         162 KFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVE  241 (342)
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHh
Confidence            9888754 889999999999999999999999999975432      24445554444   4566666677766665444


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHHHHHhhc-CCCccceeeeeeecccccHHHHHHHHhc
Q 017082          320 LKTQGAQLIFPVALLHAAAFALGYWLSKI-SFGESTSRTISIECGMQVCICFVSIFVN  376 (377)
Q Consensus       320 l~~~~~~i~~~~~ll~~~gf~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~~  376 (377)
                      .+.+...+.++..+.....|.++|.++|. |++++++.++++..+.+|..+|+++|..
T Consensus       242 ~p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~  299 (342)
T COG0798         242 QPLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIA  299 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHH
Confidence            44444566677888889999999999999 9999999999999999999999999865

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.97  E-value=5.5e-30  Score=233.85  Aligned_cols=178  Identities=44%  Similarity=0.677  Sum_probs=154.1

Q ss_pred             HHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH-HHhCCChhhhhhhhhcccCCchhHHHHHHH
Q 017082          143 TIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVATY  221 (377)
Q Consensus       143 ~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~-~~~~l~~~l~~GliLlaa~P~~~~s~v~t~  221 (377)
                      ++.++++||++|++++++|+++..||||.+..++++|++++|+++|+++ .+++++++++.|+++++|||||..+++||+
T Consensus         1 ~i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~   80 (187)
T PF01758_consen    1 PILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTY   80 (187)
T ss_dssp             --HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHH
T ss_pred             ChhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999 888999999999999999999999999999


Q ss_pred             HcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHhhh
Q 017082          222 ISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVD---AAGLAISTFQVVLVPTVVGVLANEFFP--KFTSKIISV  296 (377)
Q Consensus       222 ~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~vd---~~~i~~~Ll~vVllPl~lG~llr~~~p--~~~~~i~~~  296 (377)
                      ++|||.++++.++.++++++++++|++..++.+...++|   .++++.+++.++++|+++|+++|+++|  ++.+++++.
T Consensus        81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~  160 (187)
T PF01758_consen   81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPF  160 (187)
T ss_dssp             HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCC
T ss_pred             HhCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999999999999998877777   899999999999999999999999999  888899999


Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhHH
Q 017082          297 TPLIGVILTTLLCASPIGQVSAVL  320 (377)
Q Consensus       297 ~~~is~l~llvli~~~i~~~~~~l  320 (377)
                      .+.++.+.+++.+....+.+.+.+
T Consensus       161 ~~~~s~~~l~~~i~~~~~~~~~~i  184 (187)
T PF01758_consen  161 LKPLSFILLLLIIVLIFASNASVI  184 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTH---
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccc
Confidence            999998888777777677666654

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.7e-29  Score=250.39  Aligned_cols=269  Identities=40%  Similarity=0.579  Sum_probs=241.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcc-chhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHH
Q 017082          107 QIIEILTTLFPVWVILGTIIGIYKP-SAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPM  185 (377)
Q Consensus       107 ~~~~~l~~~~~l~vilgvllg~~~P-~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pl  185 (377)
                      +..+.-.+.+|.......+.....| ..+.|+.....+.++.+.|+++|++.+++++++..+||+.+.+|++.||++||+
T Consensus        79 ~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl  158 (371)
T KOG2718|consen   79 ALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPL  158 (371)
T ss_pred             ehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHH
Confidence            3333334567888888888888877 678888777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccChHHH
Q 017082          186 LGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYIS-KGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGL  264 (377)
Q Consensus       186 l~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~a-gGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~vd~~~i  264 (377)
                      .+|.+++.+.++...++|.+++.|++++..++..++.. +||+.+++.||.++|+.+++++|++...+.++.++.|..++
T Consensus       159 ~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v  238 (371)
T KOG2718|consen  159 LGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGV  238 (371)
T ss_pred             HHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhh
Confidence            99999999999999988888888877777777665555 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHH
Q 017082          265 AISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYW  344 (377)
Q Consensus       265 ~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~  344 (377)
                      ..+.++++.+|+.+|.++|+++|+....+.+.++.+++...++.++...+.|.+.+...+++++..+..++++||..||+
T Consensus       239 ~~s~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~~~~~i~~~~~~l~l~g~l~~Y~  318 (371)
T KOG2718|consen  239 IASILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLFFGYQILLLGAALPLAGFLAGYL  318 (371)
T ss_pred             hhhhhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888888999999999999999999999


Q ss_pred             Hhhc-CCCccceeeeeeecccccHHHHHHHHh
Q 017082          345 LSKI-SFGESTSRTISIECGMQVCICFVSIFV  375 (377)
Q Consensus       345 l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~  375 (377)
                      .++. +-+..++||+++|+||||+.+++++++
T Consensus       319 ~~~~~~~~~a~~~tisie~g~q~s~~a~~l~t  350 (371)
T KOG2718|consen  319 LSFSPLDDVATARTISIETGMQNSLLALALAT  350 (371)
T ss_pred             hhccccchhhhhcchHHHhccchhHHHHHHhh
Confidence            9743 222458999999999999999999886

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=99.29  E-value=8.9e-11  Score=115.59  Aligned_cols=143  Identities=19%  Similarity=0.209  Sum_probs=119.4

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHh---ccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHH
Q 017082          107 QIIEILTTLFPVWVILGTIIGIY---KPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIK  183 (377)
Q Consensus       107 ~~~~~l~~~~~l~vilgvllg~~---~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~  183 (377)
                      ...+.++++...+.++|.++...   .|+...-.-+........+.|+..|+.++.++.+   +++|......+.++++.
T Consensus       175 ~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~  251 (321)
T TIGR00946       175 VWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQ  251 (321)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHH
Confidence            34555688888888888887765   4654322112455677888899999999887654   34567778888899999


Q ss_pred             HHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 017082          184 PMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL  252 (377)
Q Consensus       184 Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll  252 (377)
                      |++++++...++++++.....++++++|++..+.++++++|+|.+++...+.+||+++++++|+|+.++
T Consensus       252 P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       252 PAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999998764

>PRK09903 putative transporter YfdV; Provisional

Probab=99.24  E-value=2e-10  Score=113.02  Aligned_cols=144  Identities=15%  Similarity=0.168  Sum_probs=118.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHh---ccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHH
Q 017082          105 YEQIIEILTTLFPVWVILGTIIGIY---KPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYL  181 (377)
Q Consensus       105 ~~~~~~~l~~~~~l~vilgvllg~~---~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~v  181 (377)
                      ++.+.+.++++.....++|+++...   .|+...-.-+........+.|+..|+++...+++   .+ +..+...+.+++
T Consensus       164 ~~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli  239 (314)
T PRK09903        164 LSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLI  239 (314)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHH
Confidence            3556666788888999999877665   5654332112455667778899999998876643   12 445677788999


Q ss_pred             HHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 017082          182 IKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLL  252 (377)
Q Consensus       182 l~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll  252 (377)
                      +.|++++++...+++++.....+++++++|++..+.+++..+|+|.+++...+.+||+++.+++|+|+.++
T Consensus       240 ~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        240 LMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888899999999999999999999999999999999999999999999999999999998764

>COG0679 Predicted permeases [General function prediction only]

Probab=99.06  E-value=5.4e-09  Score=102.97  Aligned_cols=146  Identities=23%  Similarity=0.327  Sum_probs=119.6

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHH---hccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHH
Q 017082          106 EQIIEILTTLFPVWVILGTIIGI---YKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLI  182 (377)
Q Consensus       106 ~~~~~~l~~~~~l~vilgvllg~---~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl  182 (377)
                      +...+-++++.....++|.++..   ..|+...............+.|+.+|++++.++.++  .+++........++++
T Consensus       160 ~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~kll~  237 (311)
T COG0679         160 SVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLKLLL  237 (311)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHHHHH
Confidence            33445558888888889988775   467643322224556777888999999999944432  2345666677779999


Q ss_pred             HHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082          183 KPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       183 ~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~  253 (377)
                      +|++++++.++++++++....+++++++|++..+.++++++++|.+++...+.+||+++++++|.+..++.
T Consensus       238 ~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~  308 (311)
T COG0679         238 APLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLL  308 (311)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999887765

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=98.90  E-value=1.7e-09  Score=99.74  Aligned_cols=186  Identities=23%  Similarity=0.289  Sum_probs=138.4

Q ss_pred             HHHHHHHHh-hhHHHHHHHHHHHHHHhccchhh---hhhH--hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHH
Q 017082          104 QYEQIIEIL-TTLFPVWVILGTIIGIYKPSAVT---WLET--DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFL  177 (377)
Q Consensus       104 ~~~~~~~~l-~~~~~l~vilgvllg~~~P~~~~---~l~~--~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv  177 (377)
                      |..|.+|++ +.|+...+.+.+..+.+-|+.+.   .++.  ....+.++-+++..|++++.|++.....+||..+++++
T Consensus        12 ~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI   91 (287)
T KOG4821|consen   12 WAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILI   91 (287)
T ss_pred             HHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHH
Confidence            345666666 58999999999999999887642   2221  12234556678899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhC---CChhhhhhhhhcccCCchhHHHH-HHHHcCCChhHHHHH-HHHHHHHHHHHHHHHHHHh
Q 017082          178 AQYLIKPMLGFVIAMTLK---LSAPLATGLILVSCCPGGQASNV-ATYISKGNVALSVLM-TTCSTIGAIVMTPLLTKLL  252 (377)
Q Consensus       178 ~~~vl~Pll~~~l~~~~~---l~~~l~~GliLlaa~P~~~~s~v-~t~~agGd~aLa~~~-t~~stllav~~iPl~l~ll  252 (377)
                      ..+.+.|-..|++.....   .++.+..|+.+.+|+|++..|++ .|..+|||...+... ...+.+.+....|-....+
T Consensus        92 ~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~L  171 (287)
T KOG4821|consen   92 LSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQML  171 (287)
T ss_pred             HHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            999999999999876654   45678999999999999999996 599999998433322 3344555555555555444


Q ss_pred             cCc------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 017082          253 AGQ------------LVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKF  289 (377)
Q Consensus       253 ~g~------------~v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~  289 (377)
                      ..+            .+..-...++.+....+++|...|...+..+|+-
T Consensus       172 L~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  220 (287)
T KOG4821|consen  172 LNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKG  220 (287)
T ss_pred             HccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCc
Confidence            311            1112234566777778889999999999888853

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=98.87  E-value=4.4e-08  Score=98.22  Aligned_cols=142  Identities=23%  Similarity=0.274  Sum_probs=114.7

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccchh----hhhhH---hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHH
Q 017082          107 QIIEILTTLFPVWVILGTIIGIYKPSAV----TWLET---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQ  179 (377)
Q Consensus       107 ~~~~~l~~~~~l~vilgvllg~~~P~~~----~~l~~---~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~  179 (377)
                      ...+.+.++.....++|++++..-|...    .++..   ......+.+.||.+|..+.....+... +.+......+.+
T Consensus       237 ~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~r  315 (385)
T PF03547_consen  237 SILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVR  315 (385)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHH
Confidence            3456667888888899999988743322    33332   345667888899999988876544322 234455568889


Q ss_pred             HHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 017082          180 YLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLT  249 (377)
Q Consensus       180 ~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l  249 (377)
                      ++++|++++++.+.++++++....+++.+++|++..+.+++.+++.|.+.+...+..+|+++++++|+|+
T Consensus       316 lii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  316 LIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999974

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=98.21  E-value=1e-06  Score=88.47  Aligned_cols=220  Identities=23%  Similarity=0.275  Sum_probs=155.3

Q ss_pred             HHHHHhcccCChHHHHHHhcCChHHHHHHHHHHH-HHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCC
Q 017082          148 FLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYL-IKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGN  226 (377)
Q Consensus       148 l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~v-l~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd  226 (377)
                      ..|+..|++++.++++++.++++.+...+..++- ++|...+.....+..++..+...+...++|++..+|+++.-.++|
T Consensus        52 ~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~  131 (371)
T KOG2718|consen   52 FVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLD  131 (371)
T ss_pred             HhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCcc
Confidence            6689999999999999999988877778888888 999999999999988888999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHHHhc----CcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHH
Q 017082          227 VALSVLMTTCSTIGAIVMTP-LLTKLLA----GQLVPVDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIG  301 (377)
Q Consensus       227 ~aLa~~~t~~stllav~~iP-l~l~ll~----g~~v~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is  301 (377)
                      .+....++.-.+.+++.++| ++++=+.    +....+|...-..-++...+.|.-.|..++..+++-...+...+..++
T Consensus       132 ~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~s  211 (371)
T KOG2718|consen  132 MDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTIS  211 (371)
T ss_pred             HHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHH
Confidence            99999999988888777777 2222111    222223322212223345678889999998888654445555554444


Q ss_pred             HHHHHHHHH-hhhhhhhhHHhhhchhHHHHHHHHHHHH--HHHHHHHhhcCCCccceeeeeeecccccHHHHHHH
Q 017082          302 VILTTLLCA-SPIGQVSAVLKTQGAQLIFPVALLHAAA--FALGYWLSKISFGESTSRTISIECGMQVCICFVSI  373 (377)
Q Consensus       302 ~l~llvli~-~~i~~~~~~l~~~~~~i~~~~~ll~~~g--f~lGy~l~r~~~~~~~~rtlsi~~G~qN~~LAl~l  373 (377)
                      .+..+.+.- .........+..+..++..  -.+..++  +.+|+.+.++    -.+|+..++.++||.++...+
T Consensus       212 tv~avi~~pl~s~~l~~~l~~~d~~~v~~--s~~~vv~~pl~lG~lL~~~----~~k~t~~i~~~~~~vsv~~t~  280 (371)
T KOG2718|consen  212 TVLAVILTPLLSILLGRALIPVDALGVIA--SILQVVGLPLALGLLLNKW----FPKRTVAIEPGLPPVSVCLTI  280 (371)
T ss_pred             HHHHHHHHHHHHHhhchhhhcccchhhhh--hhhHHhHHHHHHHHHhccc----CccceeeeecCCCchHHHhhh
Confidence            433322211 1111122233333333333  3344455  8899998864    346899999999999987654

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=97.91  E-value=0.00032  Score=69.02  Aligned_cols=223  Identities=15%  Similarity=0.199  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHhccchhhh--hhH----hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 017082          117 PVWVILGTIIGIYKPSAVTW--LET----DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI  190 (377)
Q Consensus       117 ~l~vilgvllg~~~P~~~~~--l~~----~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l  190 (377)
                      .+=+.+|.++.-++|+....  +.+    .-....+++.+|.+|.+++.++..+.+++--   .-++.++++-=++++++
T Consensus        16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~---~l~~~K~~~~~~~g~~~   92 (312)
T PRK12460         16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGG---VLTITKLGVAIVIGLLV   92 (312)
T ss_pred             HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhh---hhhhHHHHHHHHHHHHH
Confidence            34456899999999986431  111    1234688899999999999999988887532   22345887777788889


Q ss_pred             HHHhCCChhhhh-hhhhcccCCchhHHH--HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccccChHHHH
Q 017082          191 AMTLKLSAPLAT-GLILVSCCPGGQASN--VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVPVDAAGLA  265 (377)
Q Consensus       191 ~~~~~l~~~l~~-GliLlaa~P~~~~s~--v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~--~v~vd~~~i~  265 (377)
                      +++++.+.-... .+.+++++--...+-  ..+.++|-+.+-... ...    ++---|+...+-.|.  -.+++...  
T Consensus        93 ~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA~-~~~----sl~~GPf~tm~aLga~gLA~ip~~~--  165 (312)
T PRK12460         93 GKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDERDVGAI-SIL----SLNDGPFFTMLALGAAGLANIPIMA--  165 (312)
T ss_pred             HHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhhhhHH-hhh----hhccCcHHHHHHHHHHHHhcCChHH--
Confidence            999987664322 122222222222111  236666655553332 222    223334444333322  12344432  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 017082          266 ISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGYWL  345 (377)
Q Consensus       266 ~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy~l  345 (377)
                        +.- .++|+++|++++...+++.+..++-.+. ...+..+.  .-..-+.+.+.+.++.-++..++...+.+.++|++
T Consensus       166 --lv~-lilpILiGmilGNld~~~~~~l~~Gi~f-~I~f~~f~--LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i  239 (312)
T PRK12460        166 --LVA-ALLPLVLGMILGNLDPDMRKFLTKGGPL-LIPFFAFA--LGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA  239 (312)
T ss_pred             --HHH-HHHHHHHHHHHhccchhhHHHHhccceE-eHHHHHHH--hcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence              222 7899999999999887776666665433 11111111  11223445666677766666666677889999999


Q ss_pred             hhc-CCCccce
Q 017082          346 SKI-SFGESTS  355 (377)
Q Consensus       346 ~r~-~~~~~~~  355 (377)
                      +|+ |.+++..
T Consensus       240 ~rllg~~~~~g  250 (312)
T PRK12460        240 DRLVGGTGIAG  250 (312)
T ss_pred             HHHhCCChhHH
Confidence            998 6555443

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.60  E-value=0.035  Score=55.17  Aligned_cols=134  Identities=15%  Similarity=0.163  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017082          117 PVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKL  196 (377)
Q Consensus       117 ~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l  196 (377)
                      ...++...+.+...|....+= +..-.....++=..+|.+++.+.+.+....+..+....+.-.+..-+.+|.+.+..+.
T Consensus         3 lG~~ia~~~~~~~~~~~~~~p-~~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~   81 (318)
T PF05145_consen    3 LGPMIAVIIAALFGPLPLRVP-RRLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGL   81 (318)
T ss_pred             hHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            344555555565543221111 1222444444455779999999999888777666666666676777778888887776


Q ss_pred             ChhhhhhhhhcccCCchhHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 017082          197 SAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ  255 (377)
Q Consensus       197 ~~~l~~GliLlaa~P~~~~s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~  255 (377)
                      |..    --++++.|+|...- ++++..|+|.........+=-+.-++++|+...++.+.
T Consensus        82 d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~  137 (318)
T PF05145_consen   82 DRA----TAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGGG  137 (318)
T ss_pred             Chh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            644    34688999998887 57999999999999999999999999999999887753

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.44  E-value=0.013  Score=57.63  Aligned_cols=170  Identities=17%  Similarity=0.330  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHhccchhhhhh---H---hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 017082          115 LFPVWVILGTIIGIYKPSAVTWLE---T---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGF  188 (377)
Q Consensus       115 ~~~l~vilgvllg~~~P~~~~~l~---~---~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~  188 (377)
                      .+.+=+++|.++.-++|+..+.+.   +   .-....+++.+|++|.++++++..+.++|-   ..-++.++++-=++++
T Consensus        14 ~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg---~~ll~~K~~~~~~lgl   90 (314)
T PF03812_consen   14 MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKG---GVLLLVKFIIGALLGL   90 (314)
T ss_pred             eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhh---hHHHHHHHHHHHHHHH
Confidence            445556789999999999765322   1   123467889999999999999999999853   2234568888778899


Q ss_pred             HHHHHhCCChh---hhh---hhhhcccCCchhHHH--HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccc
Q 017082          189 VIAMTLKLSAP---LAT---GLILVSCCPGGQASN--VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVP  258 (377)
Q Consensus       189 ~l~~~~~l~~~---l~~---GliLlaa~P~~~~s~--v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~--~v~  258 (377)
                      ++.++++.+.-   ...   .+.+++++-....+-  ..+..+|-+.+-+.. .    +++...-|+...+..|.  ..+
T Consensus        91 ~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~-~----i~sl~~GPf~tMl~LG~sG~a~  165 (314)
T PF03812_consen   91 LVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGAF-S----ILSLNDGPFFTMLALGASGLAN  165 (314)
T ss_pred             HHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHH-H----HHHhhhhHHHHHHHHhhccccC
Confidence            99999986642   222   233334433333332  345555555554332 2    33445566665555442  345


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 017082          259 VDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVT  297 (377)
Q Consensus       259 vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~  297 (377)
                      +|...+.     -.++|+++|+++-..-|++.+.+.+-.
T Consensus       166 ip~~~lv-----~~llP~iiG~iLGNLD~~~r~fl~~~~  199 (314)
T PF03812_consen  166 IPWMSLV-----AALLPIIIGMILGNLDPDFRKFLAPGV  199 (314)
T ss_pred             CCHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHhcCC
Confidence            6664433     468999999999999888877776653

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=97.38  E-value=0.063  Score=53.89  Aligned_cols=103  Identities=21%  Similarity=0.286  Sum_probs=85.9

Q ss_pred             HHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH-HHHHHcCCC
Q 017082          148 FLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN-VATYISKGN  226 (377)
Q Consensus       148 l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~-v~t~~agGd  226 (377)
                      +.=..+|.+++.+++.+..++|-......+......=+.+|.+.+.-+.|..-+    +.+++|||.+.- .+++-+|.|
T Consensus        66 ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd  141 (352)
T COG3180          66 ILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGAD  141 (352)
T ss_pred             HHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCCC
Confidence            333467999999999999988877777777777777788888888765665433    578999998887 689999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 017082          227 VALSVLMTTCSTIGAIVMTPLLTKLLAG  254 (377)
Q Consensus       227 ~aLa~~~t~~stllav~~iPl~l~ll~g  254 (377)
                      ..+...+..+=-+.-+.+.|+....+.|
T Consensus       142 ~~~VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         142 LRLVALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999998875

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=97.02  E-value=0.076  Score=52.56  Aligned_cols=136  Identities=17%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHHHHHhccchhhhhhH---hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 017082          114 TLFPVWVILGTIIGIYKPSAVTWLET---DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI  190 (377)
Q Consensus       114 ~~~~l~vilgvllg~~~P~~~~~l~~---~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l  190 (377)
                      ....+++++|.+++-+.....+++++   ......+-.-...+|.++++.|+.+.-.  +.+....+ .....=.+++.+
T Consensus        27 ~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~--~~~~~~~~-~v~~~~~~~~~l  103 (305)
T PF03601_consen   27 GALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGW--KGLLIIII-VVILTFLLTYWL  103 (305)
T ss_pred             cHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCc--cHHHHHHH-HHHHHHHHHHHH
Confidence            35677888999988422211122221   1112344444567799999999988654  33333333 333333556777


Q ss_pred             H-HHhCCChh----hhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082          191 A-MTLKLSAP----LATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       191 ~-~~~~l~~~----l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~  253 (377)
                      + +.+++|++    ++.|.-+|+..-....+++. +--+-|+++++..+.+-..++++..|.+-.++.
T Consensus       104 g~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i-~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~  170 (305)
T PF03601_consen  104 GRRLFGLDRKLAILIAAGTSICGASAIAATAPVI-KAKEEDVAYAVATVFLFGTVAMFLYPLLGHALG  170 (305)
T ss_pred             HHHHhCCCHHHHHHHHhhcccchHHHHHHHcccc-cCCCCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence            7 99999877    34555555555444444443 234677889999999999999999999888653

; GO: 0016021 integral to membrane

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=97.01  E-value=0.038  Score=49.23  Aligned_cols=132  Identities=17%  Similarity=0.203  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 017082          115 LFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL  194 (377)
Q Consensus       115 ~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~  194 (377)
                      |+...++++.+.......... +-++.......++-..+|++++.+++++..+.+.......+...++.=..++.+.+..
T Consensus        23 ~llG~mi~~~~~~~~~~~~~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~  101 (156)
T TIGR03082        23 WLLGPLLAGAVLSLAGGLEIT-LPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLT  101 (156)
T ss_pred             HHHHHHHHHHHHHhcCCccCC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555544311111 1113345556666678899999999999887765555555555555555667777777


Q ss_pred             CCChhhhhhhhhcccCCchhHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 017082          195 KLSAPLATGLILVSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKL  251 (377)
Q Consensus       195 ~l~~~l~~GliLlaa~P~~~~s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~l  251 (377)
                      +.|...+    +++++|+|..-- .++...|.|.........+=.+.-.+.+|++..+
T Consensus       102 ~~~~~ta----~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       102 GVDPLTA----FLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             CCCHHHH----HHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7665433    588999999887 5688889999999988888888888888887654

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.97  E-value=0.17  Score=54.68  Aligned_cols=85  Identities=19%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082          140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN  217 (377)
Q Consensus       140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~  217 (377)
                      .+.-+++.++||..|+.++++++++..+   .+...-..|.++.-++++++++.++.+..  +..|..+..++ ++....
T Consensus        58 ~laelGvv~LlF~iGLEl~~~~l~~~~~---~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS-taiv~~  133 (621)
T PRK03562         58 HFAEFGVVLMLFVIGLELDPQRLWKLRR---SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS-TAIAMQ  133 (621)
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHH
Confidence            4556889999999999999999987643   23333334555544556666777776544  34444444333 334444


Q ss_pred             HHHHHcCCChh
Q 017082          218 VATYISKGNVA  228 (377)
Q Consensus       218 v~t~~agGd~a  228 (377)
                      ++...-.-+..
T Consensus       134 ~L~e~~~l~t~  144 (621)
T PRK03562        134 AMNERNLMVTQ  144 (621)
T ss_pred             HHHHhccccCc
Confidence            55554333333

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.30  E-value=0.91  Score=46.48  Aligned_cols=159  Identities=21%  Similarity=0.323  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHH--h-cc-chhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHH-HHHHHH
Q 017082          116 FPVWVILGTIIGI--Y-KP-SAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP-MLGFVI  190 (377)
Q Consensus       116 ~~l~vilgvllg~--~-~P-~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~P-ll~~~l  190 (377)
                      ...-++.|+++|-  + .+ +..+.++ .....++.++||..|+..|++++++..|+.   ..+...--+..| .++...
T Consensus        33 vlg~llaGiilGp~~~~~~~~~~~~i~-~laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~  108 (397)
T COG0475          33 VLGYLLAGIILGPWGLLLIIESSEIIE-LLAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLL  108 (397)
T ss_pred             HHHHHHHHHhcCcccccccCCchHHHH-HHHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHH
Confidence            3445567777774  1 11 2223332 466789999999999999999999877643   222222223445 334222


Q ss_pred             HH-HhCCChh--hhhhhhhcccCCchhHHHHHHHHcCCChh---HHHHHHHHHHHHHHHHHHHHHHHhcCcccccCh-HH
Q 017082          191 AM-TLKLSAP--LATGLILVSCCPGGQASNVATYISKGNVA---LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDA-AG  263 (377)
Q Consensus       191 ~~-~~~l~~~--l~~GliLlaa~P~~~~s~v~t~~agGd~a---La~~~t~~stllav~~iPl~l~ll~g~~v~vd~-~~  263 (377)
                      .. .++.+..  +..|.. ++...++..+.++.++-+=+.+   .......+.-+.++....+...+..+...+.+. ..
T Consensus       109 ~~~~~g~~~~~al~lg~~-l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~  187 (397)
T COG0475         109 LLGILGLSLIAALFLGAA-LALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILG  187 (397)
T ss_pred             HHHHhccChHHHHHHHHH-HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHH
Confidence            22 3555543  333333 3334444555566664443333   344445566666666666655554443444332 44


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017082          264 LAISTFQVVLVPTVVG  279 (377)
Q Consensus       264 i~~~Ll~vVllPl~lG  279 (377)
                      +...+.....+=..+|
T Consensus       188 ~~~~~~~f~~~~l~~g  203 (397)
T COG0475         188 LLLAILAFLALLLLLG  203 (397)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444434444

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=96.20  E-value=0.053  Score=53.34  Aligned_cols=168  Identities=13%  Similarity=0.189  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHhccchhhhhh---Hh---HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 017082          117 PVWVILGTIIGIYKPSAVTWLE---TD---LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI  190 (377)
Q Consensus       117 ~l~vilgvllg~~~P~~~~~l~---~~---~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l  190 (377)
                      .+=+.+|.++.-++|+....+.   +.   -....+++.+|++|.+++.++..+.+++--.   -++.++++-=++++++
T Consensus        16 iVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~---l~~~K~~i~~~~g~~~   92 (314)
T TIGR00793        16 LVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGT---LVVTKIAVAWVVAAIA   92 (314)
T ss_pred             HHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcce---eeeHHHHHHHHHHHHH
Confidence            3345689999999999754422   11   2345788999999999999998888876321   2345777777788889


Q ss_pred             HHHhCCCh---hhhhhhhhcccCCchhHHH--H---HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccccC
Q 017082          191 AMTLKLSA---PLATGLILVSCCPGGQASN--V---ATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVPVD  260 (377)
Q Consensus       191 ~~~~~l~~---~l~~GliLlaa~P~~~~s~--v---~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~--~v~vd  260 (377)
                      +++++.+.   .+..|+=.++..-+-..+|  .   .+.++|-+.+-...     .+.++--=|++..+..|.  ..++|
T Consensus        93 ~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~-----~i~sl~~GPf~TMi~LG~sGlA~ip  167 (314)
T TIGR00793        93 SRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAF-----VLMSLESGPLMTMVILGTAGIASFE  167 (314)
T ss_pred             HHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhh-----hhhhhccCcHHHHHHHhhccCCCCC
Confidence            99998655   2222332222222222222  2   36666655553332     122333456665555543  24566


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 017082          261 AAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVT  297 (377)
Q Consensus       261 ~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~  297 (377)
                      ...+.     -.++|+++|+.+-..-|++.+.+.+-.
T Consensus       168 ~~~lv-----~~ilPlliG~ilGNLD~~~r~fl~~~~  199 (314)
T TIGR00793       168 PHVFV-----GAVLPFLVGFALGNLDPELRDFFSKAV  199 (314)
T ss_pred             HHHHH-----HHHHHHHHHHHHhcCCHHHHHHhccCC
Confidence            64433     468999999999998888877776654

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.15  E-value=0.71  Score=49.76  Aligned_cols=85  Identities=18%  Similarity=0.137  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082          140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN  217 (377)
Q Consensus       140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~  217 (377)
                      .+.-+++.++||..|+.++++++++..+   .+...-..|.++.-++.+++...++.+..  +..|+ .++.++++....
T Consensus        58 ~laelGvv~LLF~iGLel~~~~l~~~~~---~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~-~la~SSTaiv~~  133 (601)
T PRK03659         58 HFSELGVVFLMFIIGLELNPSKLWQLRR---SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGI-GLAMSSTAMALQ  133 (601)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHH
Confidence            4556889999999999999999987544   22322333554433344445555666543  33342 223344444455


Q ss_pred             HHHHHcCCChh
Q 017082          218 VATYISKGNVA  228 (377)
Q Consensus       218 v~t~~agGd~a  228 (377)
                      ++...-.-+.+
T Consensus       134 iL~e~~~~~t~  144 (601)
T PRK03659        134 LMREKGMNRSE  144 (601)
T ss_pred             HHHHcccccCc
Confidence            56555433443

>PRK05326 potassium/proton antiporter; Reviewed

Probab=95.89  E-value=2  Score=45.77  Aligned_cols=51  Identities=16%  Similarity=0.288  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHhccch-----hhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhc
Q 017082          116 FPVWVILGTIIGIYKPSA-----VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLR  167 (377)
Q Consensus       116 ~~l~vilgvllg~~~P~~-----~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~  167 (377)
                      ....+++|+++|-..+..     .+.. .....+++.++||..|++++++++++..+
T Consensus        33 ll~~il~GillGp~~lg~i~~~~~~~~-~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~   88 (562)
T PRK05326         33 LLLFLAIGMLAGEDGLGGIQFDNYPLA-YLVGNLALAVILFDGGLRTRWSSFRPALG   88 (562)
T ss_pred             HHHHHHHHHHhCccccCCcccCcHHHH-HHHHHHHHHHHHHcCccCCCHHHHHHHHH
Confidence            344555778777543221     1112 24667899999999999999999997765

>TIGR00698 conserved hypothetical integral membrane protein

Probab=95.68  E-value=0.66  Score=46.55  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHhc-cchhhhhhHh---HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 017082          115 LFPVWVILGTIIGIYK-PSAVTWLETD---LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVI  190 (377)
Q Consensus       115 ~~~l~vilgvllg~~~-P~~~~~l~~~---~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l  190 (377)
                      ...+.+++|.+++-.. |...++.++.   .....+-.-...+|.+++++|+.+.-.  +.+......-. ..=++++.+
T Consensus        33 ~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~--~~l~~~~~~v~-~~~~~~~~~  109 (335)
T TIGR00698        33 ALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGP--NEIVADTLILT-STFFLTVFL  109 (335)
T ss_pred             HHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhH--HHHHHHHHHHH-HHHHHHHHH
Confidence            3456777777777643 2222222211   112334444566799999999987654  33333222211 222334556


Q ss_pred             H-HHhCCChh----hhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082          191 A-MTLKLSAP----LATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       191 ~-~~~~l~~~----l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~  253 (377)
                      + +.+++|++    .+.|.-+|+++-....+++. +--+-|+++++..+.+-..++.+..|.+..++.
T Consensus       110 g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i-~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       110 GSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI-KAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             HHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc-CCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence            5 78998876    35566666555444444433 234567789999999999999999999887664

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.25  E-value=4.4  Score=43.11  Aligned_cols=79  Identities=23%  Similarity=0.412  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHhccchh---hhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 017082          116 FPVWVILGTIIGIYKPSAV---TWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAM  192 (377)
Q Consensus       116 ~~l~vilgvllg~~~P~~~---~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~  192 (377)
                      ...-+++|+++|-...+..   +.++ ....+++.++||..|++++++++++..   +....+...++++.-++++++.+
T Consensus        33 ivg~IlaGillGp~~lg~~~~~~~~~-~la~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~  108 (558)
T PRK10669         33 LVGYLLAGVLAGPFTPGFVADTKLAP-ELAELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALSA  108 (558)
T ss_pred             HHHHHHHHHhhCccccccccchHHHH-HHHHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344557777764332221   1222 456788999999999999999997652   33444455566655556676777


Q ss_pred             HhCCCh
Q 017082          193 TLKLSA  198 (377)
Q Consensus       193 ~~~l~~  198 (377)
                      .++.+.
T Consensus       109 ~~~~~~  114 (558)
T PRK10669        109 VLGWSL  114 (558)
T ss_pred             HhCCCH
Confidence            776543

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=95.22  E-value=2.6  Score=46.89  Aligned_cols=55  Identities=16%  Similarity=0.183  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHhccchh---hh-----hhHhHHHHHHHHHHHHhcccCChHHHHHHhcCC
Q 017082          115 LFPVWVILGTIIGIYKPSAV---TW-----LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNP  169 (377)
Q Consensus       115 ~~~l~vilgvllg~~~P~~~---~~-----l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~p  169 (377)
                      ..++.+++|+++|-..-+..   .|     +.....-+.+.+.+|..|++++.+.+++..+.+
T Consensus        40 ~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV  102 (810)
T TIGR00844        40 ESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSV  102 (810)
T ss_pred             HHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHH
Confidence            34566667888776422111   11     100133478999999999999999998776543

This model is specific for the fungal members of this family.

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=95.21  E-value=3  Score=39.86  Aligned_cols=168  Identities=20%  Similarity=0.291  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHhccc---hhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHH-H-HHHHH
Q 017082          116 FPVWVILGTIIGIYKPS---AVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKP-M-LGFVI  190 (377)
Q Consensus       116 ~~l~vilgvllg~~~P~---~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~P-l-l~~~l  190 (377)
                      ...-+++|+++|-..-+   ..++++ .....++.+.||..|+++|.+++++..++  ....+ ...+ +.| . +++..
T Consensus        19 ~v~~il~GillGp~~lg~i~~~~~~~-~l~~igl~~llF~~Gl~~d~~~l~~~~~~--~~~~~-~~~~-~~~~~~~~~~~   93 (273)
T TIGR00932        19 VLGYLLAGVLIGPSGLGLISNVEGVN-HLAEFGVILLMFLIGLELDLERLWKLRKA--AFGVG-VLQV-LVPGVLLGLLL   93 (273)
T ss_pred             HHHHHHHHHHhCcccccCCCChHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHH-HHHH-HHHHHHHHHHH
Confidence            34455578887733111   112233 45678899999999999999999887653  22222 2233 345 2 23445


Q ss_pred             HHHhCCChh--hhhhhhhcccCCchhHHHHHHHH--cCCChh-HHHHHHHHHHHHHHHHHHHHHHHhcCcccccChHHHH
Q 017082          191 AMTLKLSAP--LATGLILVSCCPGGQASNVATYI--SKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA  265 (377)
Q Consensus       191 ~~~~~l~~~--l~~GliLlaa~P~~~~s~v~t~~--agGd~a-La~~~t~~stllav~~iPl~l~ll~g~~v~vd~~~i~  265 (377)
                      .+.++.+..  ...|.++....|+. ...++.++  .+.+.. +......++-+.+++..-+...+..+..  .+.....
T Consensus        94 ~~~~~~~~~~~~~lg~~ls~Ts~~v-~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~  170 (273)
T TIGR00932        94 GHLLGLALGAAVVIGIILALSSTAV-VVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALA  170 (273)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhHHHH-HHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHH
Confidence            566665433  23333333222211 11223322  233322 4455556777788777666655443321  1211222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHH
Q 017082          266 ISTFQVVLVPTVVGVLANEFFPKFTS  291 (377)
Q Consensus       266 ~~Ll~vVllPl~lG~llr~~~p~~~~  291 (377)
                      ..+...+..-+..+.+.|+..+...+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (273)
T TIGR00932       171 LLLLKVFLAFLLLVLLGRWLLRPVLR  196 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222333344455555555544333

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=94.98  E-value=0.24  Score=49.01  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017082          116 FPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLK  195 (377)
Q Consensus       116 ~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~  195 (377)
                      ..+.+++|.++|-+.+...+.++ +-.+..+.+..|..|.+++++++.+.-.  +.+..+.+.- ++.=.+++.+.++++
T Consensus       169 lilpILiGmilGNld~~~~~~l~-~Gi~f~I~f~~f~LG~~lnl~~I~~~G~--~GIlL~v~vv-~~t~~~~~~i~rllg  244 (312)
T PRK12460        169 ALLPLVLGMILGNLDPDMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQAGL--AGILLGVLVT-IVTGFFNIFADRLVG  244 (312)
T ss_pred             HHHHHHHHHHHhccchhhHHHHh-ccceEeHHHHHHHhcCCeeHHHHHHhCh--HHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence            34555567777766665545554 4455578888899999999999987643  3555554432 233455677778887


Q ss_pred             CChhhhhhhhh-cccCCchhHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082          196 LSAPLATGLIL-VSCCPGGQASN-VATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       196 l~~~l~~GliL-laa~P~~~~s~-v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~  253 (377)
                      .++......-= .+.+=|+++.. ...-..+..++.+...+..+.+...++.|++..++.
T Consensus       245 ~~~~~g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~  304 (312)
T PRK12460        245 GTGIAGAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA  304 (312)
T ss_pred             CChhHHHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77654222110 11111111111 122233334555666666666666666666666653

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=94.96  E-value=0.63  Score=46.54  Aligned_cols=214  Identities=17%  Similarity=0.242  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHhccchhh-------hhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 017082          117 PVWVILGTIIGIYKPSAVT-------WLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFV  189 (377)
Q Consensus       117 ~l~vilgvllg~~~P~~~~-------~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~  189 (377)
                      .+=+++|.++.-++|+...       .++ .-....+++.+|.+|.+++.++....+++--.+   ++.++.+-=++++.
T Consensus        18 ~vpl~~g~~i~tf~P~~~~~g~fT~alf~-~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l---~~~k~~~~~~~~~~   93 (326)
T PRK05274         18 LVPLLLGALINTFAPGALYFGSFTNALFK-TGAVPILAVFLFCMGASINLRATGTVLKKGGTL---LLTKFAVAALVGVI   93 (326)
T ss_pred             eHHHHHHHHHHHhCCcceeeCcchHHHHh-cChHHHHHHHHHHcCCEEeccccchhhhhchhH---HHHHHHHHHHHHHH
Confidence            3445688889999998521       121 123457888999999999999998888763222   23355555556666


Q ss_pred             HHHHhCCCh---hhhhhhh------hcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccc
Q 017082          190 IAMTLKLSA---PLATGLI------LVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQ--LVP  258 (377)
Q Consensus       190 l~~~~~l~~---~l~~Gli------Llaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~--~v~  258 (377)
                      ..++++.+.   ....|.-      .+.-+=++.....++...+....-+..      +++.-.-|.....+.+.  ..+
T Consensus        94 ~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~~d~ga~i------~lsl~~Gp~~tM~lL~aagla~  167 (326)
T PRK05274         94 AGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTKEDAGAFV------LMSLEDGPFMTMLALGAAGLAS  167 (326)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCcchHH------HHHHhhhHHHHHHHHHhhCccc
Confidence            666655322   1111111      111112222222222221111111111      11222234444444332  223


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHH
Q 017082          259 VDAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAA  338 (377)
Q Consensus       259 vd~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~g  338 (377)
                      ++...+. +    .++|+++|+.++.+.+++.+...+-...   ++-......-.+-+.+.+...+..-++.....+...
T Consensus       168 ~p~~~li-~----allplliG~~lgnl~~~l~~~~~~Gi~~---lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t  239 (326)
T PRK05274        168 FPPPALV-G----AVLPLLVGFILGNLDPELRQFLGKAVPV---LIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVT  239 (326)
T ss_pred             CCCchhh-H----HHHHHHHHHHHHhHHHhhHHHhcCCcEE---EHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhcc
Confidence            5554442 2    2399999999999888777666654433   111111111122233444445554444444556667


Q ss_pred             HHHHHHHhhc
Q 017082          339 FALGYWLSKI  348 (377)
Q Consensus       339 f~lGy~l~r~  348 (377)
                      +..+|+..|+
T Consensus       240 ~~~~~~~~Rl  249 (326)
T PRK05274        240 GIPLYLADRL  249 (326)
T ss_pred             chhhHhHhhe
Confidence            7778999987

>COG2855 Predicted membrane protein [Function unknown]

Probab=94.85  E-value=1.3  Score=44.44  Aligned_cols=135  Identities=20%  Similarity=0.213  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHhccchhhhhhH--hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 017082          115 LFPVWVILGTIIGIYKPSAVTWLET--DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAM  192 (377)
Q Consensus       115 ~~~l~vilgvllg~~~P~~~~~l~~--~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~  192 (377)
                      ...+++++|++++.+......+-..  -.....+-+-....|.++++.|+.+.-.+  .+.. ........=++++.+++
T Consensus        39 al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~--~v~~-~~~~l~~t~~~~~~lg~  115 (334)
T COG2855          39 ALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGS--GVLI-IAITLSSTFLFAYFLGK  115 (334)
T ss_pred             HHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCcc--HHHH-HHHHHHHHHHHHHHHHH
Confidence            4677788899888443221111000  11122333334556999999999876543  2222 22233333356888899


Q ss_pred             HhCCChhhhhhhhhcccCCchhHHHHH----HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082          193 TLKLSAPLATGLILVSCCPGGQASNVA----TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       193 ~~~l~~~l~~GliLlaa~P~~~~s~v~----t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~  253 (377)
                      .+++|...+. ++-+++.=||.+..+-    ..--+-|++.++..+++-..++.+..|.+..++.
T Consensus       116 ~lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~  179 (334)
T COG2855         116 LLGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG  179 (334)
T ss_pred             HhCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence            9999887432 2333444444444322    2344567788888888888888899999887753

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=94.75  E-value=1.3  Score=44.01  Aligned_cols=109  Identities=16%  Similarity=0.203  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH-HH
Q 017082          141 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN-VA  219 (377)
Q Consensus       141 ~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~-v~  219 (377)
                      ....+-.++=..+|++++.+++++..|.........+.-....=+.++++.++.+.|.    .-.+++.+|+|...- ..
T Consensus       205 l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~  280 (318)
T PF05145_consen  205 LVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALI  280 (318)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHH
Confidence            3344555556678999999999887764433334444444445556666666665543    456789999999987 57


Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082          220 TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       220 t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~  253 (377)
                      +...|.|+++......+=.+.-.+++|.+..++.
T Consensus       281 A~~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~  314 (318)
T PF05145_consen  281 ALALGADVAFVAAHQVVRLLFVLLLAPFIARWLR  314 (318)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888998887765

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=94.58  E-value=1.1  Score=42.38  Aligned_cols=89  Identities=22%  Similarity=0.229  Sum_probs=70.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHH
Q 017082          160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTC  236 (377)
Q Consensus       160 ~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~  236 (377)
                      ++.....+|++.+..+....-++--...+.+++.++++++....+.     |=...++   -.++..|||.++.+..+++
T Consensus        68 ~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~-----pkSVTtpiAi~is~~iGG~~sLta~~Vvi  142 (215)
T PF04172_consen   68 RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLA-----PKSVTTPIAIEISEQIGGIPSLTAVFVVI  142 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH-----HHHhhHHHHHHHHHHhCChHHHHHHHHHH
Confidence            3444555667788888887777777788889999999998776654     4333333   4799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 017082          237 STIGAIVMTPLLTKLLA  253 (377)
Q Consensus       237 stllav~~iPl~l~ll~  253 (377)
                      +-++..+.-|.+++++.
T Consensus       143 tGi~Ga~~g~~llk~~~  159 (215)
T PF04172_consen  143 TGILGAVLGPPLLKLLR  159 (215)
T ss_pred             HhhHHHHhHHHHHhHcc
Confidence            99999999999998864

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=94.47  E-value=6  Score=39.72  Aligned_cols=100  Identities=21%  Similarity=0.277  Sum_probs=70.3

Q ss_pred             HHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChh
Q 017082          149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA  228 (377)
Q Consensus       149 ~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~a  228 (377)
                      +++++|.-.|+.   -.+.|||..+++...|+.++  .++..+..++.++..+..+-+.+.+=+.++-.+-+.++. |.-
T Consensus        75 IF~GIGAmtDFg---pllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LAp-~Ll  148 (360)
T PF03977_consen   75 IFMGIGAMTDFG---PLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLAP-HLL  148 (360)
T ss_pred             HHHHHhHHHhhH---HHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhhH-HHH
Confidence            356778766555   45679999999999999874  666777788999999999989998877766665555542 333


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHhcC
Q 017082          229 LSVLMTTCST-IGAIVMTPLLTKLLAG  254 (377)
Q Consensus       229 La~~~t~~st-llav~~iPl~l~ll~g  254 (377)
                      -.+....-|- -+.++.-|-+++++..
T Consensus       149 gpIaVaAYsYMaLvPiiqPpimklLtt  175 (360)
T PF03977_consen  149 GPIAVAAYSYMALVPIIQPPIMKLLTT  175 (360)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence            3333333333 3467778888888863

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=94.13  E-value=1.3  Score=42.15  Aligned_cols=89  Identities=12%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHH
Q 017082          160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTC  236 (377)
Q Consensus       160 ~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~  236 (377)
                      ++.+...++++.+..+...--++--..++++++.++++++....+     .|=....+   -.++..|||++++...+++
T Consensus        78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl-----~pkSvTtpiAm~vs~~iGG~~sLta~~vvi  152 (226)
T TIGR00659        78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASL-----LPKSVTTPIAMHVSEMIGGIPAVTAVFVIL  152 (226)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHh-----hhHHhhHHHHHHHHHHhCChHHHHHHHHHH
Confidence            444444556677787777666666678889999999998876644     44444444   4699999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 017082          237 STIGAIVMTPLLTKLLA  253 (377)
Q Consensus       237 stllav~~iPl~l~ll~  253 (377)
                      +-++...+-|.+++++.
T Consensus       153 tGi~Ga~~g~~ll~~~~  169 (226)
T TIGR00659       153 TGLLGTVFGPMVLRYFR  169 (226)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            99999999999998874

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=93.96  E-value=2.1  Score=40.79  Aligned_cols=87  Identities=9%  Similarity=0.141  Sum_probs=69.6

Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHHHH
Q 017082          162 FRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTCST  238 (377)
Q Consensus       162 l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~st  238 (377)
                      .+...++++.+..+.++--++--+.++.++++++++++....+     .|=....+   -.++..||+++++...++++-
T Consensus        86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~psLtA~~ViitG  160 (232)
T PRK04288         86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKEITSFAVIFNA  160 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            3344455678888888777777788899999999999876554     45444444   469999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 017082          239 IGAIVMTPLLTKLLA  253 (377)
Q Consensus       239 llav~~iPl~l~ll~  253 (377)
                      ++..++-|.+++++.
T Consensus       161 i~Gai~g~~llk~~~  175 (232)
T PRK04288        161 VIIYALGAKFLKLFR  175 (232)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999998875

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=93.47  E-value=8.1  Score=39.26  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=67.6

Q ss_pred             HHHHhcccCChHHHHHHhcCChHHHH-HHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCCh
Q 017082          149 LMLSMGLTLTFEDFRRCLRNPWTVGI-GFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNV  227 (377)
Q Consensus       149 ~mf~~Gl~l~~~~l~~~~~~pk~l~~-~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~  227 (377)
                      +++++|.-.|+.-   .+.|||..++ +...|+.++  ..+..+..++.+...+..+-+.+.+=+.++-.+-+.++. |.
T Consensus       111 IFlGIGAMtDFgp---llanP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLAp-~L  184 (399)
T TIGR03136       111 LFFGIGAMSDISF---ILARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILAK-DL  184 (399)
T ss_pred             HHHhccHHhcchH---HHhChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhhh-Hh
Confidence            3567787666554   4679999998 789999874  555667778899888888888888877766665555552 22


Q ss_pred             hHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 017082          228 ALSVLMTTCS-TIGAIVMTPLLTKLLAG  254 (377)
Q Consensus       228 aLa~~~t~~s-tllav~~iPl~l~ll~g  254 (377)
                      --++...+-| .-+.++.-|-+++++..
T Consensus       185 lg~IaVAAYsYMaLVPiiqPpimklLtt  212 (399)
T TIGR03136       185 FVPISIIAYLYLSLTYAGYPYLIKLLVP  212 (399)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence            2223333333 23466777888888763

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=93.38  E-value=6.5  Score=44.20  Aligned_cols=107  Identities=14%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHH-HHHHHHHHhCCC---h-h----hhhhhhhcccC
Q 017082          140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPM-LGFVIAMTLKLS---A-P----LATGLILVSCC  210 (377)
Q Consensus       140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pl-l~~~l~~~~~l~---~-~----l~~GliLlaa~  210 (377)
                      .+..+++.+.||..|+.++++.+++..+  +.+.+++. .+ +.|+ ++++++..++..   . .    +..|+.+- ..
T Consensus       106 ~la~lGlillmFliGLE~Dl~~lr~~~k--~a~~ia~~-~~-ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS-~T  180 (832)
T PLN03159        106 TMANLGLLYFLFLVGVEMDISVIRRTGK--KALAIAIA-GM-ALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALS-VT  180 (832)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHhcch--HHHHHHHH-HH-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-Hh
Confidence            4567889999999999999999986544  33433333 33 3455 345555444321   1 1    11222211 11


Q ss_pred             CchhHHHHHHHHc--CCChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 017082          211 PGGQASNVATYIS--KGNVA-LSVLMTTCSTIGAIVMTPLLTKL  251 (377)
Q Consensus       211 P~~~~s~v~t~~a--gGd~a-La~~~t~~stllav~~iPl~l~l  251 (377)
                      ..+..+.++..+-  +-+.. +++...+++-+++.+++-+...+
T Consensus       181 s~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l  224 (832)
T PLN03159        181 AFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL  224 (832)
T ss_pred             hHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112222333322  33332 45566677777776666554433

>PRK10711 hypothetical protein; Provisional

Probab=93.34  E-value=0.92  Score=43.22  Aligned_cols=88  Identities=11%  Similarity=0.073  Sum_probs=70.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHHH
Q 017082          161 DFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTCS  237 (377)
Q Consensus       161 ~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~s  237 (377)
                      +.+...++++.+..+...--++--..++++++.++++++....+.     |=....+   -.++..||+.+++...++++
T Consensus        80 q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~-----pkSVTtPIAm~is~~iGG~~sLta~~Viit  154 (231)
T PRK10711         80 QLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASIL-----PKSVTTPIAMAVGGSIGGIPAISAVCVIFV  154 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh-----hhhhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            334444566788888877777777889999999999998776654     4444444   46999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 017082          238 TIGAIVMTPLLTKLLA  253 (377)
Q Consensus       238 tllav~~iPl~l~ll~  253 (377)
                      -+.+.++-|.+++++.
T Consensus       155 Gi~Ga~~g~~llk~~r  170 (231)
T PRK10711        155 GILGAVFGHTLLNAMR  170 (231)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999998875

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=92.64  E-value=6  Score=37.62  Aligned_cols=89  Identities=22%  Similarity=0.215  Sum_probs=72.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH---HHHHHcCCChhHHHHHHHH
Q 017082          160 EDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN---VATYISKGNVALSVLMTTC  236 (377)
Q Consensus       160 ~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~---v~t~~agGd~aLa~~~t~~  236 (377)
                      +++....|+|+.+..+.+.--++-=..+++++++|+++++....     .+|=....+   -.++..||-.++.+..+++
T Consensus        81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~S-----l~PkSvTTpiAm~vs~~iGGip~ltav~Vi~  155 (230)
T COG1346          81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILS-----LLPKSVTTPIAMEVSESIGGIPALTAVFVIL  155 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-----hcccccccHHHHHHHHhcCCchHHHHHHHHH
Confidence            45555567788888888776666667889999999999986554     456555555   3699999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 017082          237 STIGAIVMTPLLTKLLA  253 (377)
Q Consensus       237 stllav~~iPl~l~ll~  253 (377)
                      +-++.-++-|.+++++.
T Consensus       156 tGi~Gavlg~~llk~~~  172 (230)
T COG1346         156 TGILGAVLGPLLLKLLR  172 (230)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999998874

>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit

Probab=91.10  E-value=13  Score=37.17  Aligned_cols=100  Identities=22%  Similarity=0.301  Sum_probs=63.1

Q ss_pred             HHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCC------ChhhhhhhhhcccCCchhHHHHHHHH
Q 017082          149 LMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKL------SAPLATGLILVSCCPGGQASNVATYI  222 (377)
Q Consensus       149 ~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l------~~~l~~GliLlaa~P~~~~s~v~t~~  222 (377)
                      +++++|.-.|+.   -.+.|||.++++...|+.++  ..+..+..+++      +...+..+-+.+.+=+.++-.+-+.+
T Consensus        69 IFlGIGAmtDFg---pllanP~~~llGaaAQ~GiF--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~~l  143 (354)
T TIGR01109        69 IFMGIGALTDFG---PLLANPRTLLLGAAAQFGIF--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSGKL  143 (354)
T ss_pred             HHHhccHHhhhH---HHHhChHHHHHHHHHHhhHH--HHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhHhhh
Confidence            356777766555   45679999999999999874  45556666777      44667777777777666555544444


Q ss_pred             cCCChhHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 017082          223 SKGNVALSVLMTTCS-TIGAIVMTPLLTKLLAG  254 (377)
Q Consensus       223 agGd~aLa~~~t~~s-tllav~~iPl~l~ll~g  254 (377)
                      +. |.--++....-| .-+.++.-|-+++++..
T Consensus       144 ap-~Llg~IaVAAYsYMaLvPiiqPpimklLtt  175 (354)
T TIGR01109       144 AP-ELLAAIAVAAYSYMALVPIIQPPIMKALTS  175 (354)
T ss_pred             hh-HHHHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence            42 222223333333 23456677788888763

This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=90.58  E-value=13  Score=37.65  Aligned_cols=109  Identities=12%  Similarity=0.174  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHH-H
Q 017082          141 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNV-A  219 (377)
Q Consensus       141 ~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v-~  219 (377)
                      ...+.-.++.-..|.+++...+++..|--....+..+..+...=.+++++.+..+.|..    ...++.+|+|...-. +
T Consensus       238 l~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma~~  313 (352)
T COG3180         238 LLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMAAI  313 (352)
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHHHH
Confidence            34455556667889999999998876654444445555555555667777777666554    346789999999985 5


Q ss_pred             HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082          220 TYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       220 t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~  253 (377)
                      +...+-|.++...+.++=-++-.+..|.+.+++.
T Consensus       314 A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~  347 (352)
T COG3180         314 AAALGADPAFVMALQVLRLLFILLLGPALARFLS  347 (352)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666669999999998888887777888777664

>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional

Probab=90.49  E-value=19  Score=36.84  Aligned_cols=98  Identities=21%  Similarity=0.287  Sum_probs=61.7

Q ss_pred             HHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh------CCChhhhhhhhhcccCCchhHHHHHHHHc
Q 017082          150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYIS  223 (377)
Q Consensus       150 mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~------~l~~~l~~GliLlaa~P~~~~s~v~t~~a  223 (377)
                      ++++|.-.|+.-   .+.|||.++++...|+.++=  .+..+..+      +.+...+..+-+.+.+=+.++-.+-+.++
T Consensus       141 F~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~--t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA  215 (433)
T PRK15477        141 FMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFA--TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA  215 (433)
T ss_pred             HHhccHHhcchH---HhhCHHHHHHHHHHHhhHHH--HHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh
Confidence            567777665554   46799999999999998753  33333333      67777777887888876666555544444


Q ss_pred             CCChhHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 017082          224 KGNVALSVLMTTCS-TIGAIVMTPLLTKLLA  253 (377)
Q Consensus       224 gGd~aLa~~~t~~s-tllav~~iPl~l~ll~  253 (377)
                      . |.--++....-| .-+.++.-|-+++++.
T Consensus       216 P-~Llg~IaVAAYSYMaLVPiIQPpimklLT  245 (433)
T PRK15477        216 P-ELLGAIAVAAYSYMALVPLIQPPIMKALT  245 (433)
T ss_pred             h-HhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence            2 222223333333 2345667777888876

>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional

Probab=90.45  E-value=19  Score=36.80  Aligned_cols=98  Identities=21%  Similarity=0.287  Sum_probs=61.7

Q ss_pred             HHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh------CCChhhhhhhhhcccCCchhHHHHHHHHc
Q 017082          150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYIS  223 (377)
Q Consensus       150 mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~------~l~~~l~~GliLlaa~P~~~~s~v~t~~a  223 (377)
                      ++++|.-.|+.-   .+.|||.++++...|+.++=  .+..+..+      +.+...+..+-+.+.+=+.++-.+-+.++
T Consensus       141 F~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~--t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA  215 (433)
T PRK15476        141 FMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFA--TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA  215 (433)
T ss_pred             HHhccHHhcchH---HhhCHHHHHHHHHHHhhHHH--HHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh
Confidence            567777665554   46799999999999998753  33333333      67777777887888876666555544444


Q ss_pred             CCChhHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 017082          224 KGNVALSVLMTTCS-TIGAIVMTPLLTKLLA  253 (377)
Q Consensus       224 gGd~aLa~~~t~~s-tllav~~iPl~l~ll~  253 (377)
                      . |.--++....-| .-+.++.-|-+++++.
T Consensus       216 P-~Llg~IaVAAYSYMaLVPiIQPpimklLT  245 (433)
T PRK15476        216 P-ELLGAIAVAAYSYMALVPLIQPPIMKALT  245 (433)
T ss_pred             h-HhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence            2 222223333333 2345667777888876

>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional

Probab=90.39  E-value=19  Score=36.74  Aligned_cols=98  Identities=21%  Similarity=0.289  Sum_probs=61.9

Q ss_pred             HHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHh------CCChhhhhhhhhcccCCchhHHHHHHHHc
Q 017082          150 MLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTL------KLSAPLATGLILVSCCPGGQASNVATYIS  223 (377)
Q Consensus       150 mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~------~l~~~l~~GliLlaa~P~~~~s~v~t~~a  223 (377)
                      ++++|.-.|+.-   .+.|||.++++...|+.++=-  +..+..+      +.+...+..+-+.+.+=+.++-.+-+.++
T Consensus       141 F~GIGAMtDFgp---LlanP~~~llGaAAQ~GIF~t--~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA  215 (433)
T PRK15475        141 FMGVGAMTDFGP---LLANPRTLLLGAAAQFGIFAT--VLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA  215 (433)
T ss_pred             HHhccHHhcchH---HhhCHHHHHHHHHHHhhHHHH--HHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh
Confidence            567777665554   467999999999999987533  3333333      67777788888888877666555544444


Q ss_pred             CCChhHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 017082          224 KGNVALSVLMTTCS-TIGAIVMTPLLTKLLA  253 (377)
Q Consensus       224 gGd~aLa~~~t~~s-tllav~~iPl~l~ll~  253 (377)
                      . |.--++....-| .-+.++.-|-+++++.
T Consensus       216 P-~Llg~IaVAAYSYMaLVPiIQPpimklLT  245 (433)
T PRK15475        216 P-ELLGAIAVAAYSYMALVPLIQPPIMKALT  245 (433)
T ss_pred             h-HhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence            2 222223333333 2345667777888876

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=90.10  E-value=29  Score=36.91  Aligned_cols=48  Identities=17%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHh--ccchhhhhhH-hHHHHHHHHHHHHhcccCChHHHHHHhc
Q 017082          118 VWVILGTIIGIY--KPSAVTWLET-DLFTIGLGFLMLSMGLTLTFEDFRRCLR  167 (377)
Q Consensus       118 l~vilgvllg~~--~P~~~~~l~~-~~~~~~l~l~mf~~Gl~l~~~~l~~~~~  167 (377)
                      ..+++|+++|..  .|.. . +.+ ......+..++|..|++++++++++..+
T Consensus        27 ~lil~Gi~lg~~~~~~~~-~-~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~   77 (525)
T TIGR00831        27 ALILAGLLLGLAGLLPEV-P-LDREIVLFLFLPPLLFEAAMNTDLRELRENFR   77 (525)
T ss_pred             HHHHHHHHHHhccccCCC-C-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            344478888853  2211 0 111 2345788899999999999999987665

This model is specific for the bacterial members of this family.

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=90.09  E-value=16  Score=33.84  Aligned_cols=127  Identities=22%  Similarity=0.268  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChH--HHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017082          119 WVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFE--DFRRCL-RNPWTVGIGFLAQYLIKPMLGFVIAMTLK  195 (377)
Q Consensus       119 ~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~--~l~~~~-~~pk~l~~~lv~~~vl~Pll~~~l~~~~~  195 (377)
                      ++++|+++|++........ ....++.+.+++|.+|+++..+  .+++.. -++|.+.+.+.. .+--=+.++....+++
T Consensus         4 ~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t-IlGSllgg~l~~~ll~   81 (191)
T PF03956_consen    4 ALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT-ILGSLLGGLLASLLLG   81 (191)
T ss_pred             eHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence            5678999999976543333 3677888999999999999766  333333 134444433332 1111123444445554


Q ss_pred             CChhhhhhhhhcccCCchhHHHHH-HHHcCCChhHHHHHHHHHHH----HHHHHHHHHHHHh
Q 017082          196 LSAPLATGLILVSCCPGGQASNVA-TYISKGNVALSVLMTTCSTI----GAIVMTPLLTKLL  252 (377)
Q Consensus       196 l~~~l~~GliLlaa~P~~~~s~v~-t~~agGd~aLa~~~t~~stl----lav~~iPl~l~ll  252 (377)
                      .+.  ..++.+-+..-==+.|.++ ++.  +|.++.. +..++++    ++.+.+|++.+.+
T Consensus        82 ~~~--~~~lav~sG~GwYSlsg~~i~~~--~~~~~G~-iafl~n~~RE~~a~~~~P~~~r~~  138 (191)
T PF03956_consen   82 LSL--KESLAVASGFGWYSLSGVLITQL--YGPELGT-IAFLSNLFREILAIILIPLLARYF  138 (191)
T ss_pred             CCH--HHHHHHHccCcHHHhHHHHHHhh--hCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            443  3333333322222333333 333  3444433 3344444    4899999998843

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=88.29  E-value=15  Score=39.97  Aligned_cols=105  Identities=22%  Similarity=0.307  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082          140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN  217 (377)
Q Consensus       140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~  217 (377)
                      ++-.+.+.+.+..+|+++++..+.+   +|..++...+.-++..++..++.++.++.+..  ...|+.+   ++.|-.+.
T Consensus       268 pf~~lll~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L---~~~Gef~~  341 (621)
T PRK03562        268 PFKGLLLGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLL---GQGGEFAF  341 (621)
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHH---hccccHHH
Confidence            3445566777778999999987764   34444444555678888899999999987654  5555533   45566666


Q ss_pred             HHHHHcC--C--ChhHHHHHHHHHHHHHHHHHHHHHHH
Q 017082          218 VATYISK--G--NVALSVLMTTCSTIGAIVMTPLLTKL  251 (377)
Q Consensus       218 v~t~~ag--G--d~aLa~~~t~~stllav~~iPl~l~l  251 (377)
                      +....+.  |  |.+....++ ...+++.+++|++..+
T Consensus       342 vl~~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~  378 (621)
T PRK03562        342 VVFGAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVL  378 (621)
T ss_pred             HHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            5433322  2  333333333 3556777888877654

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=88.07  E-value=33  Score=34.89  Aligned_cols=173  Identities=16%  Similarity=0.221  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHhccchhh--h----hhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 017082          115 LFPVWVILGTIIGIYKPSAVT--W----LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGF  188 (377)
Q Consensus       115 ~~~l~vilgvllg~~~P~~~~--~----l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~  188 (377)
                      ..|-.++.|.+..+..+....  +    +...+....+...+-.+|++-+.+.+++..++-...+........+-=+++.
T Consensus        33 ~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~  112 (368)
T PF03616_consen   33 FIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGL  112 (368)
T ss_pred             cCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788777765544322111  1    1112334444444558899999888877654311111111112223334577


Q ss_pred             HHHHHhCCChhhhh--hhhhcccCCchhHHH--HHHHHcC--CChhHHHHHHHHHHHHHHHH-HHHHHHHhc-C----cc
Q 017082          189 VIAMTLKLSAPLAT--GLILVSCCPGGQASN--VATYISK--GNVALSVLMTTCSTIGAIVM-TPLLTKLLA-G----QL  256 (377)
Q Consensus       189 ~l~~~~~l~~~l~~--GliLlaa~P~~~~s~--v~t~~ag--Gd~aLa~~~t~~stllav~~-iPl~l~ll~-g----~~  256 (377)
                      .++.+++++|.+..  |-+=+.-=+++.++.  .+....|  +-.++++...++..+.+.+. .|+.-++.- +    +.
T Consensus       113 ~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~~~~~~  192 (368)
T PF03616_consen  113 GLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGKLKPKK  192 (368)
T ss_pred             HHHHHhCCCchHHHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            77888888876432  211222233433333  4443323  33445555556666665444 787544432 1    00


Q ss_pred             --------c-----------ccChHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 017082          257 --------V-----------PVDAAGLAISTFQVVLVPTVVGVLANEFFPK  288 (377)
Q Consensus       257 --------v-----------~vd~~~i~~~Ll~vVllPl~lG~llr~~~p~  288 (377)
                              .           +++...+...+ ..+.+.+.+|..++.+..+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l-~~i~i~~~~G~~i~~~l~~  242 (368)
T PF03616_consen  193 EPDELKEYLRKGEERPSAGRPITSSSLIEHL-ALILIAIGLGYIISALLKK  242 (368)
T ss_pred             ccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence                    0           12334455544 3577778888888876543

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=86.62  E-value=4  Score=40.51  Aligned_cols=69  Identities=14%  Similarity=0.263  Sum_probs=46.1

Q ss_pred             HHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q 017082          121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMT  193 (377)
Q Consensus       121 ilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~  193 (377)
                      ++|+++|-+-|+.-+.+. +-.+..+.++-|..|.+++++++.+.--  ..++.++..-. +.-...+..-+.
T Consensus       179 iiG~iLGNLD~~~r~fl~-~~~~~lIPF~~f~lGa~inl~~i~~aGl--~GIlLgv~~~~-vtg~~~~~~dr~  247 (314)
T PF03812_consen  179 IIGMILGNLDPDFRKFLA-PGVPILIPFFGFALGAGINLSNIIKAGL--SGILLGVIVVV-VTGIPLYLADRL  247 (314)
T ss_pred             HHHHHHhcCCHHHHHHHh-cCCCeeeehhhhhhcCCCCHHHHHHhCc--chHHHHHHHHH-HHhHHHHHHHHH
Confidence            478888888888776665 6667778888999999999999886543  24555555433 223333444444

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=86.50  E-value=1.9  Score=43.12  Aligned_cols=131  Identities=12%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017082          118 VWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLS  197 (377)
Q Consensus       118 l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~  197 (377)
                      +.+++|..+|-+.+...+..+ +-.++++.+..|..|.++++.++.+.-  +..++++.. +.++.+.+.+...++++.+
T Consensus       178 lplliG~~lgnl~~~l~~~~~-~Gi~~lLp~~~~~lG~~l~lq~i~~~G--~~GilL~~~-~~~~t~~~~~~~~Rl~~~~  253 (326)
T PRK05274        178 LPLLVGFILGNLDPELRQFLG-KAVPVLIPFFAFALGNGIDLGTIITAG--LSGILLGVA-VVAVTGIPLYLADRLIGGG  253 (326)
T ss_pred             HHHHHHHHHHhHHHhhHHHhc-CCcEEEHHHHHHHHhcceeHhHHHhcC--Ccchhhhhh-HhhccchhhHhHhheeecC
Confidence            444566666665554433333 334446777778899999998886543  233443333 4455667778888888654


Q ss_pred             hh---hhhhhhhcccCCchhHH-HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017082          198 AP---LATGLILVSCCPGGQAS-NVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       198 ~~---l~~GliLlaa~P~~~~s-~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~  253 (377)
                      +.   .+.+.-- +.+=|+++. ....-..+...+-+...+....+++.+..|++..++.
T Consensus       254 ~g~~g~a~~tta-G~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~  312 (326)
T PRK05274        254 NGVAGAAAGSTA-GNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWS  312 (326)
T ss_pred             CCcchHHHHHHH-HHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44   2211111 111111111 1122233445555555555555566666666665543

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=86.13  E-value=2.4  Score=42.06  Aligned_cols=83  Identities=16%  Similarity=0.354  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhhh-------hHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHHHHHH
Q 017082          271 VVLVPTVVGVLANEFFPKFTSKIISVT-------PLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAFALGY  343 (377)
Q Consensus       271 vVllPl~lG~llr~~~p~~~~~i~~~~-------~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf~lGy  343 (377)
                      -..+.+++|++++.++.+..++.++-.       -.+++.++    .  ..-+..++.+.++..++...+.....+.++|
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl----G--~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~  101 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL----G--FRLSFSDILALGWKGLLIIIIVVILTFLLTY  101 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH----C--ccccHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            356777899999973222222222211       12232222    1  1123345566777666666777788999999


Q ss_pred             HHh-hc-CCCccceeeee
Q 017082          344 WLS-KI-SFGESTSRTIS  359 (377)
Q Consensus       344 ~l~-r~-~~~~~~~rtls  359 (377)
                      +++ |+ |+|++.+.-++
T Consensus       102 ~lg~r~~~l~~~~~~Lia  119 (305)
T PF03601_consen  102 WLGRRLFGLDRKLAILIA  119 (305)
T ss_pred             HHHHHHhCCCHHHHHHHH
Confidence            999 77 88776544444

; GO: 0016021 integral to membrane

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=85.80  E-value=37  Score=33.26  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=54.6

Q ss_pred             HHHHHHHHHH-Hh--ccc-hhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH-
Q 017082          118 VWVILGTIIG-IY--KPS-AVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAM-  192 (377)
Q Consensus       118 l~vilgvllg-~~--~P~-~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~-  192 (377)
                      ..+.+|.++| ..  +++ ..+.+.+-...+++..++|....+.+.++-..  ..+ .........+...-++++.+++ 
T Consensus        15 ~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~   91 (321)
T TIGR00946        15 VVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQK--SQS-PVVLFLWGAFSGSYALIWLITKP   91 (321)
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344677774 32  333 33445545566777777777666644331111  111 2222233344455677788887 


Q ss_pred             HhCCChhhhhhhhhcccCCchh--HHHHHHHHcCCCh
Q 017082          193 TLKLSAPLATGLILVSCCPGGQ--ASNVATYISKGNV  227 (377)
Q Consensus       193 ~~~l~~~l~~GliLlaa~P~~~--~s~v~t~~agGd~  227 (377)
                      .++.+........+.++.+=..  .-++.....|-|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~~  128 (321)
T TIGR00946        92 LFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEG  128 (321)
T ss_pred             HHhcccchhhHHHHHhhhccceeehHHHHHHHhcccc
Confidence            6676766665665555544322  2234555554443

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=84.76  E-value=9.8  Score=38.01  Aligned_cols=94  Identities=12%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHH--hh-HHHHHHhhhhhHHHHHHHHHHHHhhhhhhh--hHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 017082          271 VVLVPTVVGVLANEF--FP-KFTSKIISVTPLIGVILTTLLCASPIGQVS--AVLKTQGAQLIFPVALLHAAAFALGYWL  345 (377)
Q Consensus       271 vVllPl~lG~llr~~--~p-~~~~~i~~~~~~is~l~llvli~~~i~~~~--~~l~~~~~~i~~~~~ll~~~gf~lGy~l  345 (377)
                      -+++=+++|.+++++  ++ +..+.+.+..-.   +++=.+++..++...  +.+. ..+.+.+...+...+++.+++..
T Consensus         8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~---~~lP~liF~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   83 (385)
T PF03547_consen    8 PIFLIILLGYLLGRFGILDPEASKGLSKLVFN---VFLPALIFSSIANTDTLEDLL-SLWFIPVFAFIIFILGLLLGFLL   83 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHhccchhhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            345566889888876  22 333333333222   233333444444321  1111 22233444556678888999999


Q ss_pred             hhc-CCCccceeeeeeecccccHH
Q 017082          346 SKI-SFGESTSRTISIECGMQVCI  368 (377)
Q Consensus       346 ~r~-~~~~~~~rtlsi~~G~qN~~  368 (377)
                      .|. +.+++++......++..|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~N~~  107 (385)
T PF03547_consen   84 SRLFRLPKEWRGVFVLAASFGNTG  107 (385)
T ss_pred             HHhcCCCcccceEEEecccCCcch
Confidence            997 78888888888888888875

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=84.46  E-value=18  Score=38.80  Aligned_cols=76  Identities=9%  Similarity=0.124  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhcccCChHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHH
Q 017082          141 LFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASN  217 (377)
Q Consensus       141 ~~~~~l~l~mf~~Gl~l~~~~l~~~~~~-pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~  217 (377)
                      .-...+.+-+|.+|++.-+.=++...++ .+....+++. .++.=++++++.+++++++..+.|++-=+..-++....
T Consensus        59 v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~a  135 (562)
T TIGR03802        59 VKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF-AVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGT  135 (562)
T ss_pred             HHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHH
Confidence            3467788888999999999888766665 3444444443 33444668888899999999999998766655444443

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=83.93  E-value=7.1  Score=38.72  Aligned_cols=55  Identities=13%  Similarity=0.245  Sum_probs=40.1

Q ss_pred             HHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHH
Q 017082          121 ILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLA  178 (377)
Q Consensus       121 ilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~  178 (377)
                      ++|.++|-+-|+.-+.+. +..+..+.++-|..|.+++++++.+.--  ..++.++..
T Consensus       179 liG~ilGNLD~~~r~fl~-~~~~~lIpFf~FaLGaginl~~i~~aGl--~GIlLGl~v  233 (314)
T TIGR00793       179 LVGFALGNLDPELRDFFS-KAVQTLIPFFAFALGNTIDLGVIIQTGL--LGILLGVSV  233 (314)
T ss_pred             HHHHHHhcCCHHHHHHhc-cCCCeeeehhhhhhcCCCCHHHHHHhCc--chHHHHHHH
Confidence            468888888888776665 6667788888999999999999876422  245555543

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=83.09  E-value=41  Score=36.38  Aligned_cols=106  Identities=18%  Similarity=0.222  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hhhhhhhcccCCchhHHH
Q 017082          140 DLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAP--LATGLILVSCCPGGQASN  217 (377)
Q Consensus       140 ~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll~~~l~~~~~l~~~--l~~GliLlaa~P~~~~s~  217 (377)
                      ++-...+.+.+..+|+++++..+.+   +|..+....+.-++..++..++.++.++.+..  ...|+.   ..|.|-.+.
T Consensus       265 pf~~lll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~  338 (601)
T PRK03659        265 PFKGLLLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAF  338 (601)
T ss_pred             HHHHHHHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHH
Confidence            3445667777779999999987764   34455545555677888889999999888764  445544   366677776


Q ss_pred             HHHHHcC--CChh-HHHHHHHHHHHHHHHHHHHHHHH
Q 017082          218 VATYISK--GNVA-LSVLMTTCSTIGAIVMTPLLTKL  251 (377)
Q Consensus       218 v~t~~ag--Gd~a-La~~~t~~stllav~~iPl~l~l  251 (377)
                      ++...+.  |-.+ -.....+...+++.+++|++..+
T Consensus       339 vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~  375 (601)
T PRK03659        339 VLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL  375 (601)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5533221  2111 11222355566666778877655

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=82.82  E-value=37  Score=30.77  Aligned_cols=107  Identities=20%  Similarity=0.284  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhc-------cchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHH
Q 017082          118 VWVILGTIIGIYK-------PSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKPMLGFV  189 (377)
Q Consensus       118 l~vilgvllg~~~-------P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~-pk~l~~~lv~~~vl~Pll~~~  189 (377)
                      -.++.|+++|.+.       |....+   ..-...+.+-++..|++--.+-+....++ .+.+..+.+. .++-.++++.
T Consensus        28 G~L~vgL~~G~~~~~~~~~~~~~~~~---~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i-~~~~~~~~~~  103 (169)
T PF06826_consen   28 GVLFVGLILGALGRTGPIFLPISAPS---FLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVII-TLVPLLIALV  103 (169)
T ss_pred             HHHHHHHHHHHhhhccCCCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHH
Confidence            4456788888883       443222   23466777778888888877555444444 2444444443 3344556788


Q ss_pred             HHH-HhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChh
Q 017082          190 IAM-TLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA  228 (377)
Q Consensus       190 l~~-~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~a  228 (377)
                      +++ ++++|+....|.+-=+-.-++.....-....+.|.+
T Consensus       104 ~~~~~~~l~~~~~~G~~aGa~T~tp~L~~A~~~~~~~~~~  143 (169)
T PF06826_consen  104 IGRYLFKLNPGIAAGILAGALTSTPALAAAQEAISDSGIP  143 (169)
T ss_pred             HHHHHcCCCHHHHHHHHHccccCcHHHHHHHHhhhcCCCc
Confidence            887 899999999988754444444443333332444433

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=82.34  E-value=64  Score=33.24  Aligned_cols=166  Identities=16%  Similarity=0.162  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHh---ccchhhh---hhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHH-----HHHHHHHHH
Q 017082          116 FPVWVILGTIIGIY---KPSAVTW---LETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIG-----FLAQYLIKP  184 (377)
Q Consensus       116 ~~l~vilgvllg~~---~P~~~~~---l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~-----lv~~~vl~P  184 (377)
                      .|-.++.|.+.++.   .|+...+   +...+....+...+-++|++-+++++++.-+ |-.....     .+.|+    
T Consensus        34 IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg~-~l~~~~~~~~~l~~~Qn----  108 (398)
T TIGR00210        34 IPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGGK-PLLIFLATAVGFLVIQN----  108 (398)
T ss_pred             CchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhChH-HHHHHHHHHHHHHHHHH----
Confidence            67777777664222   3443221   2223344455445558888888888775432 1111111     12344    


Q ss_pred             HHHHHHHHHhCCChhhhhhh--hhcccCCc--hhHHHHHHHH--cCCChhHHHHHHHHHHHHHHHH-HHHHHHHhcC---
Q 017082          185 MLGFVIAMTLKLSAPLATGL--ILVSCCPG--GQASNVATYI--SKGNVALSVLMTTCSTIGAIVM-TPLLTKLLAG---  254 (377)
Q Consensus       185 ll~~~l~~~~~l~~~l~~Gl--iLlaa~P~--~~~s~v~t~~--agGd~aLa~~~t~~stllav~~-iPl~l~ll~g---  254 (377)
                      .++.+++..++++|....-.  +=+.-=.+  +.....+.+.  ..+-.++++...++..+.+.+. .|+.-.+...   
T Consensus       109 ~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~l  188 (398)
T TIGR00210       109 AVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIRNKL  188 (398)
T ss_pred             HHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            45667778888887643221  11111122  2233344444  3334445555556666666655 6775543310   


Q ss_pred             --c--c----c-----------ccChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017082          255 --Q--L----V-----------PVDAAGLAISTFQVVLVPTVVGVLANEFFP  287 (377)
Q Consensus       255 --~--~----v-----------~vd~~~i~~~Ll~vVllPl~lG~llr~~~p  287 (377)
                        +  .    .           ..|.......+ ..+.+-+.+|..+.++.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~i~iai~iG~~i~~~l~  239 (398)
T TIGR00210       189 EPNCENDTKDVTIGFERPQDNRQITYNSLIETI-ALIAVCLLVGYELNDLVA  239 (398)
T ss_pred             CCCCCcccccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence              0  0    0           01222333343 467777788888777654

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=80.73  E-value=0.16  Score=50.76  Aligned_cols=161  Identities=24%  Similarity=0.409  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhccch----hhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHHHHHHHHH--HHHHH
Q 017082          118 VWVILGTIIGIYKPSA----VTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPML--GFVIA  191 (377)
Q Consensus       118 l~vilgvllg~~~P~~----~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~~vl~Pll--~~~l~  191 (377)
                      ..++.|+++|...-..    ..+.+ ....+++.++||..|.++|.+++++..++.  +..+.. .+ ..|..  ++.+.
T Consensus        25 ~~i~~Gi~lg~~~~~~~~~~~~~~~-~l~~i~l~~llF~~G~~~d~~~l~~~~~~~--~~~~~~-~~-~~~~~~~~~~~~   99 (380)
T PF00999_consen   25 GYILVGIVLGPSGLGLLEPDNPSFE-LLAEIGLAFLLFEAGLELDIKELRRNWRRA--LALGLV-GF-LLPFILVGFLLS   99 (380)
T ss_dssp             -----------------------S--SSHHHHS--SSHHHHTTGGGG---------------------------------
T ss_pred             HHHHheeehhhhhhhhccchhhHHH-HHHHHHHHHHHHHHHHhhcccccccccccc--cccccc-ee-eehhhHHHHHHH
Confidence            4445677777653221    12333 567889999999999999999998877652  222222 22 22332  33333


Q ss_pred             H---HhCC--ChhhhhhhhhcccCCchhHHHHH-HHHcCCChh-HHHHHHHHHHHHHHHHHHHHHHHhcCcccccChHHH
Q 017082          192 M---TLKL--SAPLATGLILVSCCPGGQASNVA-TYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGL  264 (377)
Q Consensus       192 ~---~~~l--~~~l~~GliLlaa~P~~~~s~v~-t~~agGd~a-La~~~t~~stllav~~iPl~l~ll~g~~v~vd~~~i  264 (377)
                      .   ..+.  ......|.++....|......+- ....+++.. .......++.+.+.+...+..... ++....+....
T Consensus       100 ~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~  178 (380)
T PF00999_consen  100 FFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQL  178 (380)
T ss_dssp             --------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT-------------------
T ss_pred             HhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccch
Confidence            2   2232  33455666665555555544442 222233332 344556777888887777776665 33344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 017082          265 AISTFQVVLVPTVVGVLANE  284 (377)
Q Consensus       265 ~~~Ll~vVllPl~lG~llr~  284 (377)
                      .......+..=.+.|...++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~  198 (380)
T PF00999_consen  179 LLSFLWIILIGIVIGLLFGW  198 (380)
T ss_dssp             --------------------
T ss_pred             hcchhhhhhhheeeecccch
Confidence            44443344333344444433

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=80.66  E-value=45  Score=35.85  Aligned_cols=104  Identities=18%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhcccCChHHHHHHhcC-ChHHHHHHHHHHHHHH-HHHHHHH-HHhCCChhhhhhhhhcccCCchhHHHHHH
Q 017082          144 IGLGFLMLSMGLTLTFEDFRRCLRN-PWTVGIGFLAQYLIKP-MLGFVIA-MTLKLSAPLATGLILVSCCPGGQASNVAT  220 (377)
Q Consensus       144 ~~l~l~mf~~Gl~l~~~~l~~~~~~-pk~l~~~lv~~~vl~P-ll~~~l~-~~~~l~~~l~~GliLlaa~P~~~~s~v~t  220 (377)
                      +.+.+-++..|++--.+-+....++ .+....+.++  .+.| ++++.++ +++++++....|.+ .++.-.++.-....
T Consensus       452 ~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~G~~-aG~~t~t~~l~~a~  528 (562)
T TIGR03802       452 LGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVV--TILPLIITMLIGKYVLKYDPALLLGAL-AGARTATPALGAVL  528 (562)
T ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHh-hccCCCcHHHHHHH
Confidence            4455555567776665555443332 2333444443  3445 5677777 68999999999984 44444333334444


Q ss_pred             HHcCCCh-hHHHHHH-HHHHHHHHHHHHHHHH
Q 017082          221 YISKGNV-ALSVLMT-TCSTIGAIVMTPLLTK  250 (377)
Q Consensus       221 ~~agGd~-aLa~~~t-~~stllav~~iPl~l~  250 (377)
                      ...+.|. +.+-..+ .+++++-++..|+++.
T Consensus       529 ~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv~  560 (562)
T TIGR03802       529 ERAGSSVPALGYTITYALGNVLLTLLGPLIVA  560 (562)
T ss_pred             HhcCCCCcccchHhHHHHHHHHHHHHHHHHHH
Confidence            4554432 2222222 4556665666665543

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=80.64  E-value=66  Score=32.31  Aligned_cols=130  Identities=22%  Similarity=0.380  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhccchhh--hhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHH-HHHHHHHHHHHHHHHHHHHHHh
Q 017082          118 VWVILGTIIGIYKPSAVT--WLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTV-GIGFLAQYLIKPMLGFVIAMTL  194 (377)
Q Consensus       118 l~vilgvllg~~~P~~~~--~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l-~~~lv~~~vl~Pll~~~l~~~~  194 (377)
                      -.+++|+..|-+-|+...  .+.+.+.-..+.++||++|+..+.+|+....    .+ .-+.+.|..+.-+.++++.+..
T Consensus        35 GyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk----~iAipgAl~qia~at~lg~gL~~~l  110 (408)
T COG4651          35 GYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVK----AIAIPGALAQIALATLLGMGLSSLL  110 (408)
T ss_pred             HHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHH----HHhcchHHHHHHHHHHHHhHHHHHc
Confidence            345567777766666432  2323455678899999999999999997642    22 3356678888888899999887


Q ss_pred             CCChhhhhhhhhcccCCchhHHHHH-HHHcCC-------ChhHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 017082          195 KLSAPLATGLILVSCCPGGQASNVA-TYISKG-------NVALSV-LMTTCSTIGAIVMTPLLTKLLA  253 (377)
Q Consensus       195 ~l~~~l~~GliLlaa~P~~~~s~v~-t~~agG-------d~aLa~-~~t~~stllav~~iPl~l~ll~  253 (377)
                      +.+  .-.|+++=-|...++..... +.+-++       ..+..- .+-=+..+++.+..|.+--.+.
T Consensus       111 gws--~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g  176 (408)
T COG4651         111 GWS--FGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG  176 (408)
T ss_pred             CCC--cccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence            653  34455554555555555433 333333       322221 1223445566677777666555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	377
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		2e-30
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		7e-30

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 3/222 (1%)
Query: 146 LGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLI 205
           LG +M  MGLTL   DF    ++P  V IG +AQ+ I P   ++++  L L A +A G+I
Sbjct: 44  LGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGVI 103
Query: 206 LVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA 265
           LV CCPGG ASNV TY+++GNVALSV +T+ ST+ + ++TP +  +LAG+++ + AAG+ 
Sbjct: 104 LVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGML 163
Query: 266 ISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGA 325
           +S  +          + ++     T K+    PL+ V    L+  + +G     +   G 
Sbjct: 164 MSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGL 223
Query: 326 QLIFPVALLHAA-AFALGYWLSKIS-FGESTSRTISIECGMQ 365
            LIF V +LH    + LG++ +K +       +T++IE GMQ
Sbjct: 224 -LIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKTLTIEVGMQ 264

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score =  127 bits (320), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 3/222 (1%)
Query: 146 LGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLI 205
           LG +M  MGLTL   DF    ++P  V IG +AQ+ I P   + ++  L L A +A G+I
Sbjct: 49  LGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVI 108
Query: 206 LVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLA 265
           LV CCPGG ASNV TY+++GNVALSV +T+ ST+ + ++TP +  +LAG+++ + AAG+ 
Sbjct: 109 LVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGML 168
Query: 266 ISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGA 325
           +S  +          + ++     T K+    PL+ V    L+  + +G     +   G 
Sbjct: 169 MSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESG- 227
Query: 326 QLIFPVALLHAA-AFALGYWLSKIS-FGESTSRTISIECGMQ 365
            LIF V +LH    + LG++ +K +       + ++IE GMQ
Sbjct: 228 LLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQ 269
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	377
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	9e-95

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  285 bits (731), Expect = 9e-95
 Identities = 86/268 (32%), Positives = 142/268 (52%), Gaps = 2/268 (0%)

Query: 99  PGGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLT 158
              M+   +I   +   F +W  L      + P    W         LG +M  MGLTL 
Sbjct: 3   AASMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWA-GPYIPWLLGIIMFGMGLTLK 61

Query: 159 FEDFRRCLRNPWTVGIGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNV 218
             DF    ++P  V IG +AQ+ I P   + ++  L L A +A G+ILV CCPGG ASNV
Sbjct: 62  PSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV 121

Query: 219 ATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVV 278
            TY+++GNVALSV +T+ ST+ + ++TP +  +LAG+++ + AAG+ +S  ++VL+P V+
Sbjct: 122 MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVL 181

Query: 279 GVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAA 338
           G++ ++     T K+    PL+ V    L+  + +G     +   G  +   V L +   
Sbjct: 182 GLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIG 241

Query: 339 FALGYWLSKIS-FGESTSRTISIECGMQ 365
           + LG++ +K +       + ++IE GMQ
Sbjct: 242 YLLGFFAAKWTGLPYDAQKALTIEVGMQ 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	377
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=1.3e-46  Score=370.61  Aligned_cols=276  Identities=31%  Similarity=0.567  Sum_probs=260.0

Q ss_pred             CCCcHHHHHHHHhhhHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHHHHHHhcccCChHHHHHHhcCChHHHHHHHHH
Q 017082          100 GGMSQYEQIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGIGFLAQ  179 (377)
Q Consensus       100 ~~~~~~~~~~~~l~~~~~l~vilgvllg~~~P~~~~~l~~~~~~~~l~l~mf~~Gl~l~~~~l~~~~~~pk~l~~~lv~~  179 (377)
                      ++|+.++|+.+++.+++++|+++++++|+++|+.+.+++ +.++++++++||.+|++++.+|+++.++|||.+..++++|
T Consensus         4 ~~m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~-~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~   82 (332)
T 3zux_A            4 ASMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG-PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQ   82 (332)
T ss_dssp             ---CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGG-GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHH
Confidence            458999999999999999999999999999999999887 7888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCChhhhhhhhhcccCCchhHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Q 017082          180 YLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPV  259 (377)
Q Consensus       180 ~vl~Pll~~~l~~~~~l~~~l~~GliLlaa~P~~~~s~v~t~~agGd~aLa~~~t~~stllav~~iPl~l~ll~g~~v~v  259 (377)
                      ++++|+++|++++.++++++++.|+++++||||+++|++||+++|||+++++.++.+||+++++++|+++.++.|+.+++
T Consensus        83 ~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v  162 (332)
T 3zux_A           83 FAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEI  162 (332)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHhhhchhHHHHHHHHHHHHH
Q 017082          260 DAAGLAISTFQVVLVPTVVGVLANEFFPKFTSKIISVTPLIGVILTTLLCASPIGQVSAVLKTQGAQLIFPVALLHAAAF  339 (377)
Q Consensus       260 d~~~i~~~Ll~vVllPl~lG~llr~~~p~~~~~i~~~~~~is~l~llvli~~~i~~~~~~l~~~~~~i~~~~~ll~~~gf  339 (377)
                      |+.+++.+++.++++|+++|+++|+++|++.+++++.++.++...+++++...++.+.+.+.+.+..++..+++++.++|
T Consensus       163 ~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~  242 (332)
T 3zux_A          163 QAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGY  242 (332)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998899988887777777777888888777778888889999999


Q ss_pred             HHHHHHhhc-CCCccceeeeeeecccccHHHHHHHHhc
Q 017082          340 ALGYWLSKI-SFGESTSRTISIECGMQVCICFVSIFVN  376 (377)
Q Consensus       340 ~lGy~l~r~-~~~~~~~rtlsi~~G~qN~~LAl~lA~~  376 (377)
                      .+||+++|+ |+++++++|+++|+|+||+++|+++|..
T Consensus       243 ~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~  280 (332)
T 3zux_A          243 LLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAA  280 (332)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHH
Confidence            999999999 9999999999999999999999999863

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00