Citrus Sinensis ID: 017087

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA
cccccccccccEEccHHHHHHHHccccEEEHHHHHHHHccccccEEEEEcccccccHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccEEEEEccccHHHcccccHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHccccEEEEccccccccccccccccEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccEEEEcccEEEEcccccccHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHccccccEEEcccHHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHcc
ccHHHHHcccEEEccccHHHHHHccccEEEHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHccHHHccccEEEEEEccHHHHHccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHcccEEEEEcccccccccEEEEccEEEEEccccEEEEcHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHEHHHHccccEEEEccccccHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHcccccEEEEccccccHHccccHHHHHHHHHHHHHcc
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAfvggnlgnplseaafhcialpsskpkfQVAVVEVSSyqmeipnkyfcpTVSVVlnltpdhlerhktmknyaltkCHLFShmvntklgllpfgnqHLNEAIKghrfnlawigafpgvkidteaktasfevpavgvvsQLQLHNmkvmgrhnyHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqivhrdiqgvtwvddskatnlEATCTglmdlkghkcvillggqakfgySGVLIWKTLVnnglsipcfAVANMKDAVNHARRMatngdaivlspgcasfdefrnfehrgmVFQELAFSA
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIeilrtpphrmqIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA
*WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQEL****
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA
MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFSA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query377 2.2.26 [Sep-21-2011]
B8FBS0450 UDP-N-acetylmuramoylalani yes no 0.880 0.737 0.322 1e-39
Q2IG29462 UDP-N-acetylmuramoylalani yes no 0.891 0.727 0.314 2e-38
Q6AJ52456 UDP-N-acetylmuramoylalani yes no 0.893 0.739 0.329 3e-38
Q1IKG8453 UDP-N-acetylmuramoylalani yes no 0.888 0.739 0.302 2e-37
A8ZXW5459 UDP-N-acetylmuramoylalani yes no 0.862 0.708 0.328 1e-36
Q7V0A5473 UDP-N-acetylmuramoylalani yes no 0.893 0.712 0.283 2e-36
Q5X1S4447 UDP-N-acetylmuramoylalani yes no 0.838 0.706 0.300 5e-36
Q5ZSA3447 UDP-N-acetylmuramoylalani yes no 0.838 0.706 0.297 2e-35
Q5WTI5447 UDP-N-acetylmuramoylalani yes no 0.838 0.706 0.297 3e-35
C1F460461 UDP-N-acetylmuramoylalani yes no 0.875 0.715 0.305 2e-34
>sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD PE=3 SV=1 Back     alignment and function desciption
 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/378 (32%), Positives = 192/378 (50%), Gaps = 46/378 (12%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           L    + G  V+ E++ A++ I     I+AVTGTNGK+TV + +G+M+   GI AFVGGN
Sbjct: 85  LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
           +GNPL       +     + K QV V E+SS+Q++   + F P V+++ N+T DH++R+ 
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194

Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
            M+ YA +K  +F +       +L  G    + A+ G      W   F G + + EA  A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250

Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
                A+   +  Q H       M + G HN  NAA AAL+         VE +   I+ 
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307

Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAKFGY-- 307
            +  PHR++ V R++  V + DDSKATN++A    L  L+G    +  ++GG+ K G+  
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHLIMGGRDKGGHFR 363

Query: 308 --------SGVLIWKTLVNNGL-------SIPCFAVANMKDAVNHARRMATNGDAIVLSP 352
                       ++ T    G+       S+       ++ AV  A+R A  G+ +VLSP
Sbjct: 364 DLKDMVEQKAARLYVTGEAAGIITSALSGSVEVVQAGTIEKAVEFAKRAARPGEVVVLSP 423

Query: 353 GCASFDEFRNFEHRGMVF 370
           GCASFD+++N++ RG  F
Sbjct: 424 GCASFDQYKNYKERGKDF 441
Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).
Desulfatibacillum alkenivorans (strain AK-01) (taxid: 439235)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 9
>sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1 Back     alignment and function description
>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3 SV=1 Back     alignment and function description
>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter versatilis (strain Ellin345) GN=murD PE=3 SV=1 Back     alignment and function description
>sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1 Back     alignment and function description
>sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD PE=3 SV=1 Back     alignment and function description
>sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Paris) GN=murD PE=3 SV=1 Back     alignment and function description
>sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1 Back     alignment and function description
>sp|Q5WTI5|MURD_LEGPL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella pneumophila (strain Lens) GN=murD PE=3 SV=1 Back     alignment and function description
>sp|C1F460|MURD_ACIC5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=murD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
297739715 479 unnamed protein product [Vitis vinifera] 0.968 0.762 0.691 1e-154
147779061 806 hypothetical protein VITISV_002512 [Viti 0.814 0.380 0.704 1e-127
302753318 492 hypothetical protein SELMODRAFT_229823 [ 0.938 0.719 0.481 3e-98
168039117 521 predicted protein [Physcomitrella patens 0.944 0.683 0.476 4e-98
302804608 492 hypothetical protein SELMODRAFT_119501 [ 0.938 0.719 0.476 2e-97
302804600 492 hypothetical protein SELMODRAFT_119124 [ 0.938 0.719 0.487 1e-94
225454866307 PREDICTED: UDP-N-acetylmuramoylalanine-- 0.771 0.947 0.531 7e-94
147774763 926 hypothetical protein VITISV_028258 [Viti 0.713 0.290 0.534 8e-94
303273586 647 predicted protein [Micromonas pusilla CC 0.928 0.540 0.335 9e-48
149922481468 UDP-N-acetylmuramoylalanine--D-glutamate 0.854 0.688 0.347 1e-40
>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/392 (69%), Positives = 314/392 (80%), Gaps = 27/392 (6%)

Query: 13  LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72
           L++ GL+ LLQSGKRV+SELDFAA+++PRSIKILAVTGTNGKSTV TF GQML+HLGIE 
Sbjct: 87  LESHGLSFLLQSGKRVLSELDFAAEILPRSIKILAVTGTNGKSTVATFSGQMLSHLGIEV 146

Query: 73  FVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDH 132
           FVGGNLG PLSEAA  C+  PS KP FQVAVVEVSSYQ+E+PNK+FCP+V+VVLNLT DH
Sbjct: 147 FVGGNLGIPLSEAAIQCLTCPSPKPVFQVAVVEVSSYQLEVPNKHFCPSVAVVLNLTSDH 206

Query: 133 LERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG--HRFNLAWIGAFPGVKI 190
           LERHKTMKNYA+TKC L SHM N+KLG+LPFGN+ LNEA++   +  NLAWIGAFPGVK+
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266

Query: 191 DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
           D E K AS  VPA+GVVS+L+L  + VMG HNY+NAAVAALSVLGLD+G+D EA++STIE
Sbjct: 267 DKEEKVASLRVPAIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIE 326

Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK------ 304
            LR PPHRMQIVH+D  GVTW+DDSKATN+EAT TGL+ LK  K VILLGG AK      
Sbjct: 327 KLRVPPHRMQIVHKDSYGVTWIDDSKATNVEATYTGLLGLKEQKSVILLGGLAKVSNSQE 386

Query: 305 -------------------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNG 345
                              FG+SG LI KTL ++GLSIPCF  AN++DAVN AR +A  G
Sbjct: 387 SNGFEQLVEPLKYHRCVITFGFSGPLIQKTLSDDGLSIPCFEAANLEDAVNCARSVARYG 446

Query: 346 DAIVLSPGCASFDEFRNFEHRGMVFQELAFSA 377
           DA+VLSPGCASFDEFRNFEHRG VFQEL FS+
Sbjct: 447 DAVVLSPGCASFDEFRNFEHRGKVFQELVFSS 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147779061|emb|CAN60311.1| hypothetical protein VITISV_002512 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens] gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella patens] gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information
>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|225454866|ref|XP_002275450.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147774763|emb|CAN60280.1| hypothetical protein VITISV_028258 [Vitis vinifera] Back     alignment and taxonomy information
>gi|303273586|ref|XP_003056153.1| predicted protein [Micromonas pusilla CCMP1545] gi|226462237|gb|EEH59529.1| predicted protein [Micromonas pusilla CCMP1545] Back     alignment and taxonomy information
>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis pacifica SIR-1] gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis pacifica SIR-1] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
TIGR_CMR|CHY_2071451 CHY_2071 "UDP-N-acetylmuramoyl 0.952 0.796 0.288 1.5e-35
UNIPROTKB|Q9KPG5440 murD "UDP-N-acetylmuramoylalan 0.920 0.788 0.286 6.9e-31
TIGR_CMR|VC_2403440 VC_2403 "UDP-N-acetylmuramoyla 0.920 0.788 0.286 6.9e-31
TIGR_CMR|SO_4221439 SO_4221 "UDP-N-acetylmuramoyla 0.859 0.738 0.310 8.8e-31
TIGR_CMR|CPS_4467471 CPS_4467 "UDP-N-acetylmuramoyl 0.925 0.740 0.295 1.8e-30
TIGR_CMR|GSU_3071452 GSU_3071 "UDP-N-acetylmuramoyl 0.342 0.285 0.366 1.6e-28
UNIPROTKB|Q97RU8450 murD "UDP-N-acetylmuramoylalan 0.877 0.735 0.294 1.9e-28
TIGR_CMR|SPO_1187466 SPO_1187 "UDP-N-acetylmuramoyl 0.389 0.315 0.343 1.7e-21
TIGR_CMR|BA_4051450 BA_4051 "UDP-N-acetylmuramoyla 0.864 0.724 0.265 2e-21
TIGR_CMR|CJE_0482402 CJE_0482 "UDP-N-acetylmuramoyl 0.363 0.340 0.309 7.4e-21
TIGR_CMR|CHY_2071 CHY_2071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 114/395 (28%), Positives = 198/395 (50%)

Query:     2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
             W L +      L    +A  L+ G  V+ E++ A + +     I+AVTGTNGK+T  +++
Sbjct:    69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126

Query:    62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
             G++L   G +  + GN+G PL EA          + ++    +EVSS+Q+E   K F P 
Sbjct:   127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176

Query:   122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
             V+V+LNLTPDHL+RHKT++ Y   K  +F +   T + +L + +  +    +     + +
Sbjct:   177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236

Query:   182 IGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
                   ++     K     V ++GV  ++  + N+ + G HN  NA +A ++      GV
Sbjct:   237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENA-LATVAACW-SFGV 294

Query:   241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
               + +   +   +   HR++ V  +I GV +V+DSK TN ++T   L   +    V++ G
Sbjct:   295 SGKNIERGLRNFQGVAHRLEKV-AEINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352

Query:   301 GQAK---FGYSG----------VLIWKTL--VNNGLSI---PCFAVA-NMKDAVNHARRM 341
             G+ K   FG             +L+ +    +   L +     + VA + +DAV  A+ +
Sbjct:   353 GRNKGNSFGELAREIREKVRFTILVGECREELKEALEMVGYDKYVVAESFEDAVKKAKEL 412

Query:   342 ATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS 376
             A  GD ++LSP  AS+D F+N+E RG +F+ L  +
Sbjct:   413 ARPGDVVLLSPAAASWDMFKNYEERGELFKRLVLN 447
GO:0008764 "UDP-N-acetylmuramoylalanine-D-glutamate ligase activity" evidence=ISS
GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS
UNIPROTKB|Q9KPG5 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2403 VC_2403 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4221 SO_4221 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4467 CPS_4467 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3071 GSU_3071 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q97RU8 murD "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Streptococcus pneumoniae TIGR4 (taxid:170187)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1187 SPO_1187 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4051 BA_4051 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0482 CJE_0482 "UDP-N-acetylmuramoylalanine--D-glutamate ligase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2.90.737
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
COG0771448 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta 7e-80
TIGR01087433 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl 9e-78
PRK14106450 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 6e-56
PRK03803448 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 2e-55
PRK02705459 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 2e-54
PRK02472447 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 5e-52
PRK02006498 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 6e-50
PRK01710458 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 3e-47
PRK01390460 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 6e-47
PRK03806438 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 1e-41
PRK03815401 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 2e-40
PRK01438480 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 2e-39
PRK04308445 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 5e-38
PRK04663438 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 5e-37
PRK01368454 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 5e-36
PRK00683418 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 5e-36
PRK04690468 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 1e-31
PRK00141473 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 1e-30
pfam08245178 pfam08245, Mur_ligase_M, Mur ligase middle domain 4e-28
COG0770451 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy 1e-20
PRK03369488 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl 1e-20
PRK00139460 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta 3e-20
TIGR01085464 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy 4e-20
COG0769475 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt 1e-18
TIGR01143417 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide-- 8e-18
PRK11929 958 PRK11929, PRK11929, putative bifunctional UDP-N-ac 1e-15
PRK11929958 PRK11929, PRK11929, putative bifunctional UDP-N-ac 4e-13
TIGR01081448 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamm 3e-09
COG0773459 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase 3e-09
PRK14022481 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-g 2e-08
TIGR01082448 TIGR01082, murC, UDP-N-acetylmuramate--alanine lig 7e-08
PRK00421461 PRK00421, murC, UDP-N-acetylmuramate--L-alanine li 2e-05
PRK14573 809 PRK14573, PRK14573, bifunctional D-alanyl-alanine 8e-05
PRK11930 822 PRK11930, PRK11930, putative bifunctional UDP-N-ac 4e-04
>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  251 bits (643), Expect = 7e-80
 Identities = 106/381 (27%), Positives = 173/381 (45%), Gaps = 55/381 (14%)

Query: 22  LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
             +G  ++ +++   ++   +  I+A+TGTNGK+T  + +  +L   G++A +GGN+G P
Sbjct: 90  KAAGIEIIGDIELFYRLSGEA-PIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148

Query: 82  LSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERHKTMK 140
             E                V V+E+SS+Q+E   +    P ++V+LN++ DHL+RH +M+
Sbjct: 149 ALELL-------EQAEPADVYVLELSSFQLETTSS--LRPEIAVILNISEDHLDRHGSME 199

Query: 141 NYALTKCHLFSHMVNTKLGLLPFGN-QHLNEAIKGHRFNLAWIGAFP----GVKIDTEAK 195
           NYA  K  +      T++ ++   +      A +  +  + W         G  I     
Sbjct: 200 NYAAAKLRILEGQ--TEVAVINADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL 257

Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILR 253
               E              +K+ G HN  N  AA+A    LG+     +EAL+S      
Sbjct: 258 VFKGEKLLPAD-------ELKLPGAHNLENALAALALARALGVPPEAILEALSS----FT 306

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
             PHR++ V  +  GV +++DSKATN++AT   L    G   +++ GG  K         
Sbjct: 307 GLPHRLEFV-GEKDGVLFINDSKATNVDATLAALSGFDG-PVILIAGGDDKGADFSPLAE 364

Query: 305 -----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPG 353
                       G     I   L              +++AV  AR +A  GD ++LSP 
Sbjct: 365 ILAKVIKKLVLIGEDAEKIAAAL--KEAGPSLVICETLEEAVQLARELAQPGDVVLLSPA 422

Query: 354 CASFDEFRNFEHRGMVFQELA 374
           CASFD+F+NFE RG  F+EL 
Sbjct: 423 CASFDQFKNFEERGEEFKELV 443

Length = 448
>gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase Back     alignment and domain information
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235160 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234995 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235162 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234662 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain Back     alignment and domain information
>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional Back     alignment and domain information
>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase Back     alignment and domain information
>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Back     alignment and domain information
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional Back     alignment and domain information
>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional Back     alignment and domain information
>gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase Back     alignment and domain information
>gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|237588 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional Back     alignment and domain information
>gnl|CDD|233264 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase Back     alignment and domain information
>gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 377
COG0771448 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas 100.0
PRK01368454 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
TIGR01087433 murD UDP-N-acetylmuramoylalanine--D-glutamate liga 100.0
PRK03803448 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK04308445 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK01710458 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK03369488 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK04663438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK00141473 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK01390460 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK02705459 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK04690468 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK02472447 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK03806438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK01438480 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK02006498 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK03815401 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK14106450 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
COG0773459 MurC UDP-N-acetylmuramate-alanine ligase [Cell env 100.0
PRK00683418 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 100.0
PRK00421461 murC UDP-N-acetylmuramate--L-alanine ligase; Provi 100.0
TIGR01082448 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a 100.0
TIGR01081448 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl 100.0
PRK10773453 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a 100.0
TIGR01143417 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a 100.0
COG0770451 MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce 100.0
PRK14093479 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop 100.0
PRK00139460 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d 100.0
PRK14573 809 bifunctional D-alanyl-alanine synthetase A/UDP-N-a 100.0
TIGR01085464 murE UDP-N-acetylmuramyl-tripeptide synthetase. A 100.0
PRK11929958 putative bifunctional UDP-N-acetylmuramoylalanyl-D 100.0
PRK11929 958 putative bifunctional UDP-N-acetylmuramoylalanyl-D 100.0
PRK11930 822 putative bifunctional UDP-N-acetylmuramoyl-tripept 100.0
PRK14022481 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l 100.0
COG0769475 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell 100.0
TIGR01499397 folC folylpolyglutamate synthase/dihydrofolate syn 100.0
TIGR02068864 cya_phycin_syn cyanophycin synthetase. Cyanophycin 100.0
PRK10846416 bifunctional folylpolyglutamate synthase/ dihydrof 100.0
PLN02913510 dihydrofolate synthetase 100.0
COG0285427 FolC Folylpolyglutamate synthase [Coenzyme metabol 100.0
PLN02881530 tetrahydrofolylpolyglutamate synthase 100.0
PRK14016727 cyanophycin synthetase; Provisional 100.0
PF08245188 Mur_ligase_M: Mur ligase middle domain; InterPro: 100.0
KOG2525496 consensus Folylpolyglutamate synthase [Coenzyme tr 99.96
PF0287591 Mur_ligase_C: Mur ligase family, glutamate ligase 98.94
COG1703323 ArgK Putative periplasmic protein kinase ArgK and 96.62
PRK09435332 membrane ATPase/protein kinase; Provisional 94.13
cd0198399 Fer4_NifH The Fer4_NifH superfamily contains a var 92.82
PF00485194 PRK: Phosphoribulokinase / Uridine kinase family; 92.0
TIGR03172232 probable selenium-dependent hydroxylase accessory 91.74
PRK15453290 phosphoribulokinase; Provisional 91.6
TIGR03029274 EpsG chain length determinant protein tyrosine kin 90.57
PRK13869405 plasmid-partitioning protein RepA; Provisional 90.21
PHA02519387 plasmid partition protein SopA; Reviewed 89.82
PRK00652325 lpxK tetraacyldisaccharide 4'-kinase; Reviewed 89.82
cd02117212 NifH_like This family contains the NifH (iron prot 89.37
PRK13705388 plasmid-partitioning protein SopA; Provisional 89.3
COG1763161 MobB Molybdopterin-guanine dinucleotide biosynthes 89.19
COG2894272 MinD Septum formation inhibitor-activating ATPase 88.83
COG0132223 BioD Dethiobiotin synthetase [Coenzyme metabolism] 88.81
PRK07667193 uridine kinase; Provisional 88.65
cd02040270 NifH NifH gene encodes component II (iron protein) 88.59
PF08353113 DUF1727: Domain of unknown function (DUF1727); Int 88.55
PRK06696223 uridine kinase; Validated 88.4
TIGR01007204 eps_fam capsular exopolysaccharide family. This mo 88.33
PRK13232273 nifH nitrogenase reductase; Reviewed 88.33
PRK14494229 putative molybdopterin-guanine dinucleotide biosyn 87.92
PRK05439311 pantothenate kinase; Provisional 87.57
TIGR03453387 partition_RepA plasmid partitioning protein RepA. 87.48
COG1936180 Predicted nucleotide kinase (related to CMP and AM 87.42
COG1072283 CoaA Panthothenate kinase [Coenzyme metabolism] 87.36
cd03114148 ArgK-like The function of this protein family is u 87.17
PHA02518211 ParA-like protein; Provisional 87.14
TIGR03018207 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t 87.13
cd02028179 UMPK_like Uridine monophosphate kinase_like (UMPK_ 87.11
COG0552340 FtsY Signal recognition particle GTPase [Intracell 86.99
PRK13230279 nitrogenase reductase-like protein; Reviewed 86.8
TIGR03371246 cellulose_yhjQ cellulose synthase operon protein Y 86.54
PRK14493274 putative bifunctional molybdopterin-guanine dinucl 86.39
PRK10037250 cell division protein; Provisional 86.36
PF03205140 MobB: Molybdopterin guanine dinucleotide synthesis 86.21
COG2403449 Predicted GTPase [General function prediction only 86.15
PRK13235274 nifH nitrogenase reductase; Reviewed 85.87
cd02029277 PRK_like Phosphoribulokinase-like (PRK-like) is a 85.81
COG4240300 Predicted kinase [General function prediction only 85.67
cd03116159 MobB Molybdenum is an essential trace element in t 85.52
TIGR00554290 panK_bact pantothenate kinase, bacterial type. Sho 85.22
cd02032267 Bchl_like This family of proteins contains bchL an 85.2
TIGR00064272 ftsY signal recognition particle-docking protein F 85.12
TIGR02016296 BchX chlorophyllide reductase iron protein subunit 84.76
COG0769475 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell 84.7
PF06564243 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p 84.52
cd02033329 BchX Chlorophyllide reductase converts chlorophyll 84.27
PF01656195 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai 84.1
TIGR00176155 mobB molybdopterin-guanine dinucleotide biosynthes 83.62
PRK14974336 cell division protein FtsY; Provisional 83.57
COG3367339 Uncharacterized conserved protein [Function unknow 83.53
PRK13234295 nifH nitrogenase reductase; Reviewed 83.49
TIGR01287275 nifH nitrogenase iron protein. This model describe 83.39
PRK14495 452 putative molybdopterin-guanine dinucleotide biosyn 83.29
PRK00784 488 cobyric acid synthase; Provisional 83.25
TIGR01281268 DPOR_bchL light-independent protochlorophyllide re 83.04
PF03308266 ArgK: ArgK protein; InterPro: IPR005129 Bacterial 83.03
PRK11670369 antiporter inner membrane protein; Provisional 82.78
COG0572218 Udk Uridine kinase [Nucleotide transport and metab 82.77
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 82.64
PRK10416318 signal recognition particle-docking protein FtsY; 82.0
PRK10751173 molybdopterin-guanine dinucleotide biosynthesis pr 81.47
CHL00072290 chlL photochlorophyllide reductase subunit L 81.35
cd02036179 MinD Bacterial cell division requires the formatio 81.25
TIGR01968261 minD_bact septum site-determining protein MinD. Th 81.23
COG0529197 CysC Adenylylsulfate kinase and related kinases [I 80.76
COG0541451 Ffh Signal recognition particle GTPase [Intracellu 80.61
PF13500199 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R 80.49
PRK13185270 chlL protochlorophyllide reductase iron-sulfur ATP 80.48
PRK13849231 putative crown gall tumor protein VirC1; Provision 80.32
KOG3347176 consensus Predicted nucleotide kinase/nuclear prot 80.29
cd02025220 PanK Pantothenate kinase (PanK) catalyzes the phos 80.28
PRK13236296 nitrogenase reductase; Reviewed 80.19
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-69  Score=514.38  Aligned_cols=351  Identities=30%  Similarity=0.491  Sum_probs=303.2

Q ss_pred             hhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccchh
Q 017087            3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL   82 (377)
Q Consensus         3 ~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~~   82 (377)
                      ++||.||-||++||.+++|++.|+|++.+++++++.. ...|+|+|||||||||||+||+++|+++|.++.++||+|.|.
T Consensus        71 d~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~  149 (448)
T COG0771          71 DLVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA  149 (448)
T ss_pred             CEEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH
Confidence            6899999999999999999999999999999999986 356799999999999999999999999999999999999998


Q ss_pred             hhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEEe
Q 017087           83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP  162 (377)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n  162 (377)
                      .....       ...+.|+.|+|+||++++... .++|+++|||||++||||||+|+|+|..+|.+|+.++.+  ++|+|
T Consensus       150 l~~~~-------~~~~~d~~VlElSSfQL~~~~-~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin  219 (448)
T COG0771         150 LELLE-------QAEPADVYVLELSSFQLETTS-SLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVIN  219 (448)
T ss_pred             HHhhc-------ccCCCCEEEEEccccccccCc-cCCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEEe
Confidence            87643       134678899999999999875 489999999999999999999999999999999997654  89999


Q ss_pred             CCChhhHHHHhc-cCcceeEeecCCCcc---cccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHc
Q 017087          163 FGNQHLNEAIKG-HRFNLAWIGAFPGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI  238 (377)
Q Consensus       163 ~dd~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~l  238 (377)
                      .||+++..+... ....+.+|+......   ...+..   ...  .+ +.-+....++++|.||.+|+++|+  |+|+.+
T Consensus       220 ~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~---~~~--~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~~  291 (448)
T COG0771         220 ADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGK---LVF--KG-EKLLPADELKLPGAHNLENALAAL--ALARAL  291 (448)
T ss_pred             CCcHHHhhhhhhcccceeEEEEccccccccceeecch---hcc--cc-ccccchhhcCCcchhhHHHHHHHH--HHHHHc
Confidence            999999887765 334556666432210   000000   000  01 111122368999999999999999  899999


Q ss_pred             CCCHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC--------------
Q 017087          239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------------  304 (377)
Q Consensus       239 gi~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~--------------  304 (377)
                      |++++.|.++|.+|+|+++|||.++ ..+|+.+|+|+.++|+.++..+|+.++ +|+++|+||.+|              
T Consensus       292 gv~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~df~~L~~~~~~~  369 (448)
T COG0771         292 GVPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGADFSPLAEILAKV  369 (448)
T ss_pred             CCCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCCChhHHHHHhhhc
Confidence            9999999999999999999999998 589999999999999999999999998 799999999876              


Q ss_pred             ------CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087          305 ------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS  376 (377)
Q Consensus       305 ------~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~  376 (377)
                            +|++.+.+.+.+++.+.  ....+.++++|++.+.+.+++||+||++|+|+||++|++|++||+.|+++|+.
T Consensus       370 ~~~~~~~G~~~~~i~~~l~~~~~--~~~~~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~v~~  445 (448)
T COG0771         370 IKKLVLIGEDAEKIAAALKEAGP--SLVICETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKELVSE  445 (448)
T ss_pred             ceEEEEeCCCHHHHHHHHHhcCC--ceeecCcHHHHHHHHHHhhcCCCeEEEcccccchhhhcCHHHHHHHHHHHHHH
Confidence                  78899999999987643  36678999999999999999999999999999999999999999999999874

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase Back     alignment and domain information
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase Back     alignment and domain information
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase Back     alignment and domain information
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed Back     alignment and domain information
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Back     alignment and domain information
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional Back     alignment and domain information
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase Back     alignment and domain information
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional Back     alignment and domain information
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional Back     alignment and domain information
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional Back     alignment and domain information
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase Back     alignment and domain information
>TIGR02068 cya_phycin_syn cyanophycin synthetase Back     alignment and domain information
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional Back     alignment and domain information
>PLN02913 dihydrofolate synthetase Back     alignment and domain information
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] Back     alignment and domain information
>PLN02881 tetrahydrofolylpolyglutamate synthase Back     alignment and domain information
>PRK14016 cyanophycin synthetase; Provisional Back     alignment and domain information
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment Back     alignment and domain information
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family Back     alignment and domain information
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09435 membrane ATPase/protein kinase; Provisional Back     alignment and domain information
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain Back     alignment and domain information
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 Back     alignment and domain information
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC Back     alignment and domain information
>PRK15453 phosphoribulokinase; Provisional Back     alignment and domain information
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG Back     alignment and domain information
>PRK13869 plasmid-partitioning protein RepA; Provisional Back     alignment and domain information
>PHA02519 plasmid partition protein SopA; Reviewed Back     alignment and domain information
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed Back     alignment and domain information
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase Back     alignment and domain information
>PRK13705 plasmid-partitioning protein SopA; Provisional Back     alignment and domain information
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] Back     alignment and domain information
>PRK07667 uridine kinase; Provisional Back     alignment and domain information
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase Back     alignment and domain information
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>TIGR01007 eps_fam capsular exopolysaccharide family Back     alignment and domain information
>PRK13232 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional Back     alignment and domain information
>PRK05439 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR03453 partition_RepA plasmid partitioning protein RepA Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] Back     alignment and domain information
>cd03114 ArgK-like The function of this protein family is unkown Back     alignment and domain information
>PHA02518 ParA-like protein; Provisional Back     alignment and domain information
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase Back     alignment and domain information
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13230 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ Back     alignment and domain information
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional Back     alignment and domain information
>PRK10037 cell division protein; Provisional Back     alignment and domain information
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A Back     alignment and domain information
>COG2403 Predicted GTPase [General function prediction only] Back     alignment and domain information
>PRK13235 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes Back     alignment and domain information
>COG4240 Predicted kinase [General function prediction only] Back     alignment and domain information
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes Back     alignment and domain information
>TIGR00554 panK_bact pantothenate kinase, bacterial type Back     alignment and domain information
>cd02032 Bchl_like This family of proteins contains bchL and chlL Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X Back     alignment and domain information
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon Back     alignment and domain information
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring Back     alignment and domain information
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases Back     alignment and domain information
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>COG3367 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13234 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>TIGR01287 nifH nitrogenase iron protein Back     alignment and domain information
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK00784 cobyric acid synthase; Provisional Back     alignment and domain information
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein Back     alignment and domain information
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components Back     alignment and domain information
>PRK11670 antiporter inner membrane protein; Provisional Back     alignment and domain information
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional Back     alignment and domain information
>CHL00072 chlL photochlorophyllide reductase subunit L Back     alignment and domain information
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell Back     alignment and domain information
>TIGR01968 minD_bact septum site-determining protein MinD Back     alignment and domain information
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A Back     alignment and domain information
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional Back     alignment and domain information
>PRK13849 putative crown gall tumor protein VirC1; Provisional Back     alignment and domain information
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] Back     alignment and domain information
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway Back     alignment and domain information
>PRK13236 nitrogenase reductase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
1e0d_A437 Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L 3e-26
2jff_A445 Crystal Structure Of Murd Ligase In Complex With D- 1e-25
2wjp_A439 Crystal Structure Of Murd Ligase In Complex With D- 1e-25
2uag_A437 Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L 2e-25
3lk7_A451 The Crystal Structure Of Udp-N-Acetylmuramoylalanin 5e-25
>pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 166/370 (44%), Gaps = 82/370 (22%)
Query: 45  ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVV 104
           I+A+TG+NGKSTV T VG+M    G+   VGGN+G P         AL     + ++ V+
Sbjct: 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP---------ALMLLDDECELYVL 156
Query: 105 EVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSH----MVNTKLG 159
           E+SS+Q+E  +       + +LN+T DH++R+   ++ Y   K  ++ +    +VN    
Sbjct: 157 ELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDA 215
Query: 160 L-LPF--------------GNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
           L +P               G+ HLN     H+    W+    G K+              
Sbjct: 216 LTMPIRGADERCVSFGVNMGDYHLN-----HQQGETWL-RVKGEKV-------------- 255
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT---PPHRMQI 261
                L +  MK+ G+HNY NA  A                 S+++ L T    PHR ++
Sbjct: 256 -----LNVKEMKLSGQHNYTNALAALALAD-----AAGLPRASSLKALTTFTGLPHRFEV 305
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCV-ILLGGQAKFGYSGVLIWKTLVNNG 320
           V  +  GV W++DSKATN+ +T   L  L     + +LLGG  K      L  + L  + 
Sbjct: 306 V-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLA-RYLNGDN 363
Query: 321 LSIPCFA------------VANMKDAVNHARRM----ATNGDAIVLSPGCASFDEFRNFE 364
           + + CF             VA   + +  A R+       GD ++LSP CAS D+F+NFE
Sbjct: 364 VRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFE 423
Query: 365 HRGMVFQELA 374
            RG  F  LA
Sbjct: 424 QRGNEFARLA 433
>pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Sulfonamide Inhibitor Length = 445 Back     alignment and structure
>pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Rhodanine Inhibitor Length = 439 Back     alignment and structure
>pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437 Back     alignment and structure
>pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
3lk7_A451 UDP-N-acetylmuramoylalanine--D-glutamate ligase; a 3e-90
2x5o_A439 UDP-N-acetylmuramoylalanine--D-glutamate ligase; A 7e-85
1e8c_A498 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami 3e-19
1gg4_A452 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino 1e-16
2wtz_A535 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di 4e-16
2am1_A454 SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl 2e-15
3eag_A326 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME 1e-11
1j6u_A469 UDP-N-acetylmuramate-alanine ligase MURC; structur 3e-07
3hn7_A524 UDP-N-acetylmuramate-L-alanine ligase; ATP-binding 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1p3d_A475 UDP-N-acetylmuramate--alanine ligase; alpha/beta p 2e-05
2f00_A491 UDP-N-acetylmuramate--L-alanine ligase; amide bond 5e-05
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 Back     alignment and structure
 Score =  277 bits (711), Expect = 3e-90
 Identities = 90/379 (23%), Positives = 165/379 (43%), Gaps = 46/379 (12%)

Query: 18  LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
           +   L+    V++E++ A  V     +++ +TG+NGK+T  T + ++LN  G    + GN
Sbjct: 89  VKKALEKQIPVLTEVELAYLVSES--QLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN 146

Query: 78  LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME-IPNKYFCPTVSVVLNLTPDHLERH 136
           +G P SE          +       V+E+SS+Q+  +    F P ++V+ NL P HL+ H
Sbjct: 147 IGFPASEVV-------QAANDKDTLVMELSSFQLMGVKE--FRPHIAVITNLMPTHLDYH 197

Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG---AFPGVKIDTE 193
            + ++Y   K ++ + M ++   +L F      E  K  +  +          G  +  +
Sbjct: 198 GSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKATIVPFSTTEKVDGAYVQDK 257

Query: 194 AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR 253
                 E         + + ++ V G HN  NA       +    G+  + +  T+    
Sbjct: 258 QLFYKGEN-------IMSVDDIGVPGSHNVENALATIA--VAKLAGISNQVIRETLSNFG 308

Query: 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK--------- 304
              HR+Q +   + G+++ +DSK+TN+ AT   L      K +++ GG  +         
Sbjct: 309 GVKHRLQSL-GKVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRGNEFDELIP 367

Query: 305 ----------FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGC 354
                      G S   + +     G  +      +++DAV+ A  +A  GD I+LSP  
Sbjct: 368 DITGLKHMVVLGESASRVKRAAQKAG--VTYSDALDVRDAVHKAYEVAQQGDVILLSPAN 425

Query: 355 ASFDEFRNFEHRGMVFQEL 373
           AS+D ++NFE RG  F + 
Sbjct: 426 ASWDMYKNFEVRGDEFIDT 444
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 Back     alignment and structure
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 Back     alignment and structure
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 Back     alignment and structure
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535 Back     alignment and structure
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454 Back     alignment and structure
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Length = 326 Back     alignment and structure
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 Back     alignment and structure
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 Back     alignment and structure
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
3lk7_A451 UDP-N-acetylmuramoylalanine--D-glutamate ligase; a 100.0
2x5o_A439 UDP-N-acetylmuramoylalanine--D-glutamate ligase; A 100.0
4hv4_A494 UDP-N-acetylmuramate--L-alanine ligase; MURC, yers 100.0
3hn7_A524 UDP-N-acetylmuramate-L-alanine ligase; ATP-binding 100.0
1p3d_A475 UDP-N-acetylmuramate--alanine ligase; alpha/beta p 100.0
2f00_A491 UDP-N-acetylmuramate--L-alanine ligase; amide bond 100.0
2am1_A454 SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl 100.0
1gg4_A452 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino 100.0
1j6u_A469 UDP-N-acetylmuramate-alanine ligase MURC; structur 100.0
1e8c_A498 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami 100.0
2wtz_A535 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di 100.0
2vos_A487 Folylpolyglutamate synthase protein FOLC; ligase, 100.0
3nrs_A437 Dihydrofolate:folylpolyglutamate synthetase; struc 100.0
3eag_A326 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME 100.0
1o5z_A442 Folylpolyglutamate synthase/dihydrofolate synthas; 100.0
1jbw_A428 Folylpolyglutamate synthase; FPGS folate AMPPCP te 100.0
1w78_A422 FOLC bifunctional protein; DHFS, dihydrofolate syn 100.0
3mvn_A163 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M 99.62
1pjq_A457 CYSG, siroheme synthase; rossman fold, nucleotide 95.19
3fwy_A314 Light-independent protochlorophyllide reductase I 93.69
3fgn_A251 Dethiobiotin synthetase; biotin biosynthesis, BIOD 93.33
1xjc_A169 MOBB protein homolog; structural genomics, midwest 92.83
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 92.62
3of5_A228 Dethiobiotin synthetase; structural genomics, cent 92.54
3cio_A299 ETK, tyrosine-protein kinase ETK; WZC, escherichia 92.1
1byi_A224 Dethiobiotin synthase; biotin synthesis, cyclo-lig 91.86
2g0t_A350 Conserved hypothetical protein; structural genomic 91.85
3bfv_A271 CAPA1, CAPB2, membrane protein CAPA1, protein tyro 91.32
3la6_A286 Tyrosine-protein kinase WZC; P-loop protein, nucle 91.16
3ea0_A245 ATPase, para family; alpha-beta-alpha sandwich, st 91.14
1wcv_1257 SOJ, segregation protein; ATPase, bacterial, chrom 90.48
2ph1_A262 Nucleotide-binding protein; alpha-beta protein, st 90.47
1g3q_A237 MIND ATPase, cell division inhibitor; alpha-beta-a 89.79
3qxc_A242 Dethiobiotin synthetase; DTBS, structural genomics 89.28
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 88.92
2oze_A298 ORF delta'; para, walker type atpases, DNA segrega 88.66
2xj4_A286 MIPZ; replication, cell division, ATPase, WACA; 1. 88.31
1vma_A306 Cell division protein FTSY; TM0570, structural gen 88.22
1hyq_A263 MIND, cell division inhibitor (MIND-1); MINC, FTSZ 87.65
3q9l_A260 Septum site-determining protein MIND; ATPase, bact 86.89
3cwq_A209 Para family chromosome partitioning protein; alpha 86.65
3k9g_A267 PF-32 protein; ssgcid, SBRI, decode biostructures, 86.62
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 86.36
3ug7_A349 Arsenical pump-driving ATPase; tail-anchored, memb 85.26
3fkq_A373 NTRC-like two-domain protein; RER070207001320, str 85.05
3end_A307 Light-independent protochlorophyllide reductase ir 84.93
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 84.92
1a7j_A290 Phosphoribulokinase; transferase, calvin cycle; 2. 84.65
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 83.55
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 83.47
2obn_A349 Hypothetical protein; structural genomics, joint c 83.11
3zq6_A324 Putative arsenical pump-driving ATPase; tail-ancho 83.03
2afh_E289 Nitrogenase iron protein 1; nitrogen fixation, iro 82.55
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 82.3
1cp2_A269 CP2, nitrogenase iron protein; oxidoreductase; 1.9 82.18
2woo_A329 ATPase GET3; tail-anchored, membrane protein, targ 82.04
3ez2_A398 Plasmid partition protein A; type IA, DNA binding, 81.77
3ez9_A403 Para; DNA binding, winged-HTH, partition, biosynth 81.77
3pg5_A361 Uncharacterized protein; structural genomics, PSI- 81.19
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 81.0
1kyq_A274 Met8P, siroheme biosynthesis protein Met8; homodim 80.82
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 80.64
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Back     alignment and structure
Probab=100.00  E-value=5e-71  Score=544.64  Aligned_cols=355  Identities=26%  Similarity=0.398  Sum_probs=305.5

Q ss_pred             chhhhhhcccCCCcHHHHHHHHcCCceeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeeeccccch
Q 017087            2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP   81 (377)
Q Consensus         2 ~~~~~~~~~~~~~~p~~~~a~~~~~~~l~~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~g~~g~~   81 (377)
                      .++||+||+++++||++++|+++|+|+++++++++++.  +.++|+||||||||||++||+++|+++|.++.++|++|.|
T Consensus        73 ~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~  150 (451)
T 3lk7_A           73 FCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP  150 (451)
T ss_dssp             EEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred             CCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence            47899999999999999999999999999999999987  4599999999999999999999999999999999999999


Q ss_pred             hhhhhhhcccCCCCCCCccEEEEEeCccccccCCccccccEEEEecCCcchhcCCCCHHHHHHHHHHhcccCCCCceEEE
Q 017087           82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL  161 (377)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~ViE~~~~~l~~~~~~~~p~i~ViTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~  161 (377)
                      ++....       ...+.|++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|++|++.+++++.+|+
T Consensus       151 ~~~~~~-------~~~~~d~~VlE~~s~~l~~~~-~~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~  222 (451)
T 3lk7_A          151 ASEVVQ-------AANDKDTLVMELSSFQLMGVK-EFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVL  222 (451)
T ss_dssp             HHHHTT-------TCCTTCEEEEECCHHHHTTCS-SCCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEE
T ss_pred             hhhhhh-------cCCCCCEEEEECCcccccccc-ccCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence            875432       123578999999999987653 489999999999999999999999999999999999888999999


Q ss_pred             eCCChhhHHHHhccCcceeEeecCCCc-ccccccccceEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCC
Q 017087          162 PFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV  240 (377)
Q Consensus       162 n~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi  240 (377)
                      |.|||....+.+....++++|+..... ....  ....+.+.  +. ..+....++++|.||++|+++|+  +++..+|+
T Consensus       223 n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~--~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi  295 (451)
T 3lk7_A          223 NFNQGISKELAKTTKATIVPFSTTEKVDGAYV--QDKQLFYK--GE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGI  295 (451)
T ss_dssp             ETTSHHHHHHHTTCSSEEEEEESSSCCSSEEE--ETTEEEET--TE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTC
T ss_pred             ECCcHHHHHHHhhcCCeEEEEccCCCcCCEEE--ECCEEEEC--Cc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCC
Confidence            999999988887767778888865322 0000  01122222  21 12234578999999999999999  88999999


Q ss_pred             CHHHHHHHhhcCCCCCCeeeEEeeccCCeEEEEcCCCCCHHHHHHHHhcccCCcEEEEecCCCC----------------
Q 017087          241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK----------------  304 (377)
Q Consensus       241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~r~i~v~G~~~~----------------  304 (377)
                      +++.|+++|++|+++|||||++. ..+++.+|||||||||+|+.++++.++++|+++|+|++++                
T Consensus       296 ~~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~~d~~~l~~~l~~~d~  374 (451)
T 3lk7_A          296 SNQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRGNEFDELIPDITGLKH  374 (451)
T ss_dssp             CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCSCCCGGGHHHHTTCSE
T ss_pred             CHHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCCCCHHHHHHHHHhcCE
Confidence            99999999999999999999996 3678999999889999999999999875568999987652                


Q ss_pred             ---CCCChHHHHHHHHhCCCCCcccccCCHHHHHHHHHHhcCCCCEEEEcCCCcccccccChHHHHHHHHHHHhc
Q 017087          305 ---FGYSGVLIWKTLVNNGLSIPCFAVANMKDAVNHARRMATNGDAIVLSPGCASFDEFRNFEHRGMVFQELAFS  376 (377)
Q Consensus       305 ---~g~~~~~i~~~l~~~g~~~~~~~~~~~~~ai~~a~~~~~~gdivli~~g~~s~~~~~~~~~rg~~f~~~v~~  376 (377)
                         .|++++.+.+.++..+.  .+.+++|+++|++.+.+.+++||+||++|+|+||++|++|++||++|+++|++
T Consensus       375 vi~~G~~~~~l~~~~~~~g~--~~~~~~~~~eAv~~a~~~a~~gD~VLlspa~as~d~f~~~~~RG~~F~~~v~~  447 (451)
T 3lk7_A          375 MVVLGESASRVKRAAQKAGV--TYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFES  447 (451)
T ss_dssp             EEECSTTHHHHHHHHHHTTC--CEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHhcCC--ceEEeCCHHHHHHHHHHhCCCCCEEEEcCcCcchhhhhCHHHHHHHHHHHHHH
Confidence               57788888888876654  46678999999999999999999999999999999999999999999999975
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Back     alignment and structure
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A Back     alignment and structure
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Back     alignment and structure
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Back     alignment and structure
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Back     alignment and structure
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Back     alignment and structure
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Back     alignment and structure
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Back     alignment and structure
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Back     alignment and structure
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* Back     alignment and structure
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Back     alignment and structure
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Back     alignment and structure
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Back     alignment and structure
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Back     alignment and structure
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} Back     alignment and structure
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Back     alignment and structure
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Back     alignment and structure
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Back     alignment and structure
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Back     alignment and structure
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 Back     alignment and structure
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Back     alignment and structure
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} Back     alignment and structure
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Back     alignment and structure
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Back     alignment and structure
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Back     alignment and structure
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Back     alignment and structure
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Back     alignment and structure
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Back     alignment and structure
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Back     alignment and structure
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Back     alignment and structure
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* Back     alignment and structure
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} Back     alignment and structure
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Back     alignment and structure
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Back     alignment and structure
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A Back     alignment and structure
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A Back     alignment and structure
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 377
d2jfga2140 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanin 2e-24
d1p3da3215 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine 8e-17
d1gg4a4214 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl 1e-15
d2jfga3204 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine 2e-13
d1e8ca3234 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid 6e-13
d1j6ua3207 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l 8e-11
d2gc6a2296 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase { 1e-04
d1o5za2296 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase 2e-04
>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 140 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: MurCDEF C-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 95.8 bits (237), Expect = 2e-24
 Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKFGYSGVLIWKT 315
           PHR ++V  +  GV W++DSKATN+ +T   L  L     + LL G          + + 
Sbjct: 3   PHRFEVV-LEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARY 61

Query: 316 LVNNGLSIPCFAVAN----------------MKDAVNHARRMATNGDAIVLSPGCASFDE 359
           L  + + + CF                    M+ A+         GD ++LSP CAS D+
Sbjct: 62  LNGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQ 121

Query: 360 FRNFEHRGMVFQELA 374
           F+NFE RG  F  LA
Sbjct: 122 FKNFEQRGNEFARLA 136
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215 Back     information, alignment and structure
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234 Back     information, alignment and structure
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207 Back     information, alignment and structure
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296 Back     information, alignment and structure
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
d1p3da3215 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 100.0
d2jfga3204 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 100.0
d1e8ca3234 UDP-N-acetylmuramyl tripeptide synthetase MurE {Es 100.0
d1gg4a4214 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 100.0
d1j6ua3207 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 100.0
d1o5za2296 Folylpolyglutamate synthetase {Thermotoga maritima 100.0
d2gc6a2296 Folylpolyglutamate synthetase {Lactobacillus casei 99.97
d2jfga2140 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 99.92
d1e8ca2160 UDP-N-acetylmuramyl tripeptide synthetase MurE {Es 99.6
d1gg4a1135 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 99.58
d1p3da2152 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 99.29
d1j6ua2151 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 99.22
d2gc6a1129 Folylpolyglutamate synthetase, C-terminal domain { 99.09
d1o5za1137 Folylpolyglutamate synthetase, C-terminal domain { 99.01
d1j6ua189 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 97.72
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 95.33
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 94.24
d1a7ja_288 Phosphoribulokinase {Rhodobacter sphaeroides [TaxI 93.8
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 93.26
d2afhe1289 Nitrogenase iron protein {Azotobacter vinelandii [ 92.99
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 91.47
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 91.35
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 91.23
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 91.15
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 90.63
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 90.06
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 89.94
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 88.23
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 88.21
d1g3qa_237 Cell division regulator MinD {Archaeon Pyrococcus 87.85
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 85.29
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 84.81
d1vmaa2213 GTPase domain of the signal recognition particle r 83.74
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 83.65
d1ls1a2207 GTPase domain of the signal sequence recognition p 83.11
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 82.89
d1okkd2207 GTPase domain of the signal recognition particle r 82.46
d1eucb1148 Succinyl-CoA synthetase, beta-chain, C-terminal do 82.09
d1deka_241 Deoxynucleoside monophosphate kinase {Bacteriophag 80.7
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 80.11
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=2.3e-39  Score=286.16  Aligned_cols=207  Identities=18%  Similarity=0.202  Sum_probs=160.2

Q ss_pred             HHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhCCCCeeee-ccccchhhhhhhhcccCCCCCCCccEEEEEeCcc
Q 017087           31 ELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVG-GNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY  109 (377)
Q Consensus        31 ~~~~~~~~~~~~~~~I~VTGTnGKTTT~~~l~~iL~~~g~~~~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~ViE~~~~  109 (377)
                      |.|+|++++ +..++||||||||||||++||+++|+++|+++... |.+..++....        .....+++|+|+|++
T Consensus         1 r~e~L~~~~-r~~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~v~E~~~~   71 (215)
T d1p3da3           1 RAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGKNA--------HLGASRYLIAEADES   71 (215)
T ss_dssp             HHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTEEE--------ECCSSSEEEEECCCT
T ss_pred             CHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCcccc--------ccCCCceEEEEcCCc
Confidence            567888877 56789999999999999999999999999987543 33333322111        123457899999998


Q ss_pred             ccccCCccccccEEEEecCCcchhcCC-CCHHHHHHHHHHhcccCCCCceEEEeCCChhhHHHHhccCcceeEeecCCCc
Q 017087          110 QMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGV  188 (377)
Q Consensus       110 ~l~~~~~~~~p~i~ViTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~  188 (377)
                      +....  .++||++|||||++||+|+| +++|+|+++|.++++.++++|.+|+|.||+....+......++++||.+...
T Consensus        72 ~~~~~--~~~p~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~g~~~~~  149 (215)
T d1p3da3          72 DASFL--HLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQA  149 (215)
T ss_dssp             TSGGG--GCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCSEEEEEESSTTC
T ss_pred             cccce--eEcCCEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEEEeCcchHHHHHHHhcCCceEEEcccccc
Confidence            76543  37999999999999999987 6999999999999999999999999999999998887777788889865432


Q ss_pred             ccc-----cccccc-eEEeccCCeeEEEEeeccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCC
Q 017087          189 KID-----TEAKTA-SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILR  253 (377)
Q Consensus       189 ~~~-----~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~~~a~~~~lgi~~~~i~~~l~~~~  253 (377)
                      ...     ...... ............   +.+|++|+||++|+++|+  ++|..+|+++++|+++|++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hn~~N~laAi--a~a~~lGi~~~~i~~~L~~Fk  215 (215)
T d1p3da3         150 DYRIEDYEQTGFQGHYTVICPNNERIN---VLLNVPGKHNALNATAAL--AVAKEEGIANEAILEALADFQ  215 (215)
T ss_dssp             SEEEEEEEEETTEEEEEEECTTCCEEE---EEESSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCC
T ss_pred             cccccccccccccccccccccccceee---EEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcC
Confidence            111     011111 111222222223   368999999999999999  899999999999999999986
>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure