Citrus Sinensis ID: 017153
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 376 | 2.2.26 [Sep-21-2011] | |||||||
| Q55512 | 338 | Aspartate-semialdehyde de | N/A | no | 0.869 | 0.967 | 0.525 | 1e-102 | |
| P49420 | 343 | Aspartate-semialdehyde de | yes | no | 0.893 | 0.979 | 0.494 | 9e-96 | |
| O67716 | 340 | Aspartate-semialdehyde de | yes | no | 0.875 | 0.967 | 0.507 | 9e-92 | |
| O31219 | 347 | Aspartate-semialdehyde de | yes | no | 0.875 | 0.948 | 0.464 | 4e-82 | |
| Q59291 | 343 | Aspartate-semialdehyde de | yes | no | 0.864 | 0.947 | 0.467 | 4e-79 | |
| P23247 | 337 | Aspartate-semialdehyde de | yes | no | 0.869 | 0.970 | 0.456 | 1e-78 | |
| Q04797 | 346 | Aspartate-semialdehyde de | yes | no | 0.861 | 0.936 | 0.453 | 5e-77 | |
| Q56732 | 338 | Aspartate-semialdehyde de | N/A | no | 0.867 | 0.964 | 0.439 | 6e-76 | |
| Q56734 | 338 | Aspartate-semialdehyde de | yes | no | 0.867 | 0.964 | 0.436 | 8e-76 | |
| Q9ZK28 | 346 | Aspartate-semialdehyde de | yes | no | 0.856 | 0.930 | 0.434 | 3e-71 |
| >sp|Q55512|DHAS_SYNY3 Aspartate-semialdehyde dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asd PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/335 (52%), Positives = 244/335 (72%), Gaps = 8/335 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VA++G TGAVG E L +L+ R+FP +K+LAS RSAGK L FQ + ++ + +F G
Sbjct: 7 VAILGATGAVGTELLELLASRNFPLAELKLLASPRSAGKTLEFQGEKLPIQAVDGSAFKG 66
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
D+ L SAGGS SK++ + G+++VDNSSAFRMV VPLV+PE+NPEA
Sbjct: 67 CDLVLASAGGSTSKRWAEEITKAGAVMVDNSSAFRMVPEVPLVVPEINPEA------AQN 120
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNC+TI+ +A PLH+ + R+VV+TYQ+ASGAGA AMEE++ Q+R++LEG
Sbjct: 121 HQGIIANPNCTTILMGVAIYPLHQLQPIKRIVVATYQSASGAGAMAMEEVKHQSRDILEG 180
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVM 281
K P +I AFNLF HN+P+ N Y EEEMKMV+ETRKI+ +D+R+TATC+RVPV+
Sbjct: 181 KIPQAEILPYPLAFNLFPHNSPITANHYCEEEMKMVQETRKIFAAEDIRITATCVRVPVL 240
Query: 282 RAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRR 341
RAH+E+VNL+F P + A+ + APGV +++D N+FP P++ + +DDV VGRIR+
Sbjct: 241 RAHSEAVNLEFATPFPVELAKTAIAKAPGVKLVEDWQKNYFPMPMDATGQDDVLVGRIRQ 300
Query: 342 DVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
D+S +GLD+++CGDQ+RKGAALNAVQIAE+L+
Sbjct: 301 DISHP--NGLDLWLCGDQIRKGAALNAVQIAELLV 333
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|P49420|DHAS_PROMA Aspartate-semialdehyde dehydrogenase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=asd PE=3 SV=2 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 172/348 (49%), Positives = 248/348 (71%), Gaps = 12/348 (3%)
Query: 33 MSYQESAP----SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA 88
M+ Q+ P ++AV+G +GAVG E L +L +R FP R +++LAS+RSAG+ F+ +
Sbjct: 1 MTLQKPFPDRPLTLAVLGSSGAVGAEILKILEERSFPIRELRLLASERSAGQVQFFKGED 60
Query: 89 YTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEV 148
V++++ + F+ VD+ L SAGGSIS+K+ + G+++VDNS+A+RM +VPLV+PEV
Sbjct: 61 LVVKKVSPEGFEDVDLVLASAGGSISRKWRKVINSAGAVIVDNSNAYRMEPDVPLVVPEV 120
Query: 149 NPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAM 208
NP +V KG LIANPNC+TI+ + PL + + R+VVSTYQ+ASGAGA AM
Sbjct: 121 NPS-----QVFTHKG-LIANPNCTTILLALVLAPLSAQLPIKRVVVSTYQSASGAGARAM 174
Query: 209 EELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD 268
EL+ +++VL G P +I AFNLF HN+P+ N Y EEEMKM+ ETRKI N +
Sbjct: 175 NELKQLSQDVLNGNIPKSEILPYSLAFNLFLHNSPLQSNNYCEEEMKMINETRKILNQSE 234
Query: 269 VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEV 328
+ +TATC+RVPV+RAH+ES+N++F +P + AR IL NA G+ +++D N FP P++V
Sbjct: 235 LAITATCVRVPVLRAHSESINIEFAEPFPVEEARKILSNASGIKLLEDIQMNRFPMPIDV 294
Query: 329 SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+ KDD+AVGRIR+D+S L++++CGDQ+RKGAALNA+QIAE+LL
Sbjct: 295 TGKDDIAVGRIRQDLSNP--KALELWLCGDQIRKGAALNAIQIAELLL 340
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O67716|DHAS_AQUAE Aspartate-semialdehyde dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=asd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (864), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 171/337 (50%), Positives = 239/337 (70%), Gaps = 8/337 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFD 100
VA+VG TG VG+ FL VL +R+FP + + AS+RS GK L+F+ K YTV+ L E+SF
Sbjct: 5 VAIVGATGEVGRTFLKVLEERNFPVDELVLYASERSEGKVLTFKGKEYTVKALNKENSFK 64
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
G+DIALFSAGGS SK++ P + G +V+DNSSA+RM +VPLV+PEVNPE + K
Sbjct: 65 GIDIALFSAGGSTSKEWAPKFAKDGVVVIDNSSAWRMDPDVPLVVPEVNPEDVKDFK--- 121
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
K +IANPNCSTI ++A P++ +A + R+VVSTYQA SGAGA A+E+L+ QT+ E
Sbjct: 122 -KKGIIANPNCSTIQMVVALKPIYDKAGIKRVVVSTYQAVSGAGAKAIEDLKNQTKAWCE 180
Query: 221 GKP-PTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVP 279
GK P + F Q AFN H E+GY +EE KM+ ETRKI +D++++V+ATC+R+P
Sbjct: 181 GKEMPKAQKFPHQIAFNALPHIDVFFEDGYTKEENKMLYETRKIMHDENIKVSATCVRIP 240
Query: 280 VMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRI 339
V H+ES++++ EK + + AR++LKNAPGV+VID+ +N +P P+ +D+V VGRI
Sbjct: 241 VFYGHSESISMETEKEISPEEAREVLKNAPGVIVIDNPQNNEYPMPIMAEGRDEVFVGRI 300
Query: 340 RRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
R+D + GL ++V D +RKGAA NAVQIAE+L+
Sbjct: 301 RKD--RVFEPGLSMWVVADNIRKGAATNAVQIAELLV 335
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|O31219|DHAS_LEGPN Aspartate-semialdehyde dehydrogenase OS=Legionella pneumophila GN=asd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/336 (46%), Positives = 223/336 (66%), Gaps = 7/336 (2%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+VA+VG TGAVG+ FL+VL +R+FP +S+ LAS RS GK ++F+D+ V +L E F
Sbjct: 6 NVAIVGATGAVGETFLTVLEERNFPIKSLYPLASSRSVGKTVTFRDQELDVLDLAEFDFS 65
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
VD+ALFSAGG++SK++ P AV G +VVDN+S FR +++PLV+P + S
Sbjct: 66 KVDLALFSAGGAVSKEYAPKAVAAGCVVVDNTSCFRYEDDIPLVVPG----SESSSNRDY 121
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
K +IANPNCSTI ++A P++ ++R+ V+TYQ+ SG G A+ EL Q ++L
Sbjct: 122 TKRGIIANPNCSTIQMVVALKPIYDAVGISRINVATYQSVSGTGKKAISELVAQVGDLLN 181
Query: 221 GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPV 280
G+P +++ QQ AFN H +NGY EEMKMV ETRKI D + V T +RVPV
Sbjct: 182 GRPANVQVYPQQIAFNALPHIDQFEDNGYTREEMKMVWETRKIMEDDSIMVNPTAVRVPV 241
Query: 281 MRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVS-NKDDVAVGRI 339
+ H+E+V+L+ +KPL D AR +L APGV V+D+ + +PT ++ + DDV VGRI
Sbjct: 242 IYGHSEAVHLELKKPLTADDARALLAKAPGVTVVDNLSKASYPTAIKNAVGHDDVFVGRI 301
Query: 340 RRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375
R+D+S GL++++ D +RKGAA NAVQIAE+L
Sbjct: 302 RQDISHPC--GLNLWIVADNIRKGAATNAVQIAEIL 335
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Legionella pneumophila (taxid: 446) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q59291|DHAS_CAMJE Aspartate-semialdehyde dehydrogenase OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) GN=asd PE=1 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 160/342 (46%), Positives = 222/342 (64%), Gaps = 17/342 (4%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-- 99
+A+VG TGAVG+E L+VL + DFP SI LAS +S G ++ F+ KAY V+ELTE+ F
Sbjct: 7 IAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVGSEVEFKGKAYKVKELTENVFKE 66
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG 159
+ +DIA FSAGGS+S+K+ AVE G++V+DN+S FRM ++VPLV+PE NPE + K
Sbjct: 67 NPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHFRMEKDVPLVVPECNPEDIKDWK-- 124
Query: 160 MGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVL 219
K +IANPNCSTI + PL+ + R+ VSTYQAASGAG M+EL +
Sbjct: 125 --KTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTYQAASGAGKEGMQELVEAMQSFF 182
Query: 220 -----EGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTAT 274
E +P T F A NL ++N Y +EE+KMV ET+KI + K++ V+AT
Sbjct: 183 AFKLDEFEPQT---FPYTLALNLIPQIDVFMDNDYTKEELKMVNETQKILH-KNLEVSAT 238
Query: 275 CIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDV 334
C+RVPV+R+H+E++ + FEK +D A++ILK AP V+VIDD + +P PL S+ ++
Sbjct: 239 CVRVPVLRSHSEAITMHFEKEIDVKKAKEILKKAPSVIVIDDPKNKKYPMPLMTSDTNET 298
Query: 335 AVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
VGRIR DV L ++ DQ+R GAA NAV+IA+ L
Sbjct: 299 YVGRIRADVYD--KKILHLWCVADQIRVGAATNAVRIAQKWL 338
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) (taxid: 192222) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P23247|DHAS2_VIBCH Aspartate-semialdehyde dehydrogenase 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=asd2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 218/337 (64%), Gaps = 10/337 (2%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+VA+ G TGAVG+ L VL +R+FP + +LAS+RS GK F K V+ + E +
Sbjct: 6 NVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWS 65
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
V IALFSAGG +S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ +
Sbjct: 66 QVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR--- 122
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
+IANPNCSTI L+A P++ + R+ V+TYQ+ SGAG A ++EL QT ++L
Sbjct: 123 -NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLN 181
Query: 221 GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPV 280
G P FSQQ AFN ++NGY +EEMKMV ET+KI+ND + V TC+RVPV
Sbjct: 182 GYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPV 241
Query: 281 MRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRI 339
HAE+V+++ P+D + D+L+ G+ + R ++ FPT + + KD V VGR+
Sbjct: 242 FYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELF--RGAD-FPTQVRDAGGKDHVLVGRV 298
Query: 340 RRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
R D+S + G++++V D VRKGAA NAVQIAE+L+
Sbjct: 299 RNDISH--HSGINLWVVADNVRKGAATNAVQIAELLV 333
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q04797|DHAS_BACSU Aspartate-semialdehyde dehydrogenase OS=Bacillus subtilis (strain 168) GN=asd PE=1 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (737), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 156/344 (45%), Positives = 222/344 (64%), Gaps = 20/344 (5%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVGQ+ L L DR+F ++ +L+SKRSAG +++F+ + TV+E + +SF+G
Sbjct: 7 VAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESFEG 66
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V+IALFSAGGS+S+ P AV++G+IV+DN+SAFRM EN PLV+PEVN +
Sbjct: 67 VNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLH------E 120
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNCSTI + A P+ + + +++VSTYQA SGAG A++EL QT+ +L
Sbjct: 121 HNGIIANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNK 180
Query: 222 KPPTCKIF-------SQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTAT 274
+ +I Q AFN +NGY EEMKM+ ET+KI + D++V AT
Sbjct: 181 EEIEPEIMPVKGDKKHYQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAAT 240
Query: 275 CIRVPVMRAHAESVNLQFEKPLDEDTARDI---LKNAPGVVVIDDRASNHFPTPLEVSNK 331
C+R+P+ H+ESV ++ ++ D+ T DI LK APGV + DD + +P P + K
Sbjct: 241 CVRLPIQTGHSESVYIEIDR--DDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGK 298
Query: 332 DDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375
+DV VGRIR+D+ D +G ++V D + KGAA N+VQIAE L
Sbjct: 299 NDVFVGRIRKDL--DRANGFHLWVVSDNLLKGAAWNSVQIAESL 340
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q56732|DHAS_SHESP Aspartate-semialdehyde dehydrogenase OS=Shewanella sp. (strain DB6705) GN=asd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 149/339 (43%), Positives = 225/339 (66%), Gaps = 13/339 (3%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+V V+G +GAVGQ + +L +R+FP + LAS RSAG +SF K VE L D FD
Sbjct: 6 NVVVLGASGAVGQTIIEILQERNFPIAKLFPLASSRSAGGTVSFNGK--QVEILDVDDFD 63
Query: 101 G--VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
I FSAGG +S+K+ PIA E G +V+DN+S FR +VPLVIPEVNPEA++ +
Sbjct: 64 WSQAQIGFFSAGGDVSEKWAPIAAESGCVVIDNTSHFRYDNDVPLVIPEVNPEAIADFR- 122
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
+IANPNCSTI L+A P++ ++R+ V+TYQ+ SG+G A+ EL Q ++
Sbjct: 123 ---NRNIIANPNCSTIQMLVALKPIYDAFGISRINVATYQSVSGSGKEAIAELAGQCSKL 179
Query: 219 LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRV 278
L+G P K++S+Q AFN+ +ENGY +EEMKMV ET+KI+ D ++ V T +RV
Sbjct: 180 LQGLPIEPKVYSKQIAFNVLPQIDTFMENGYTKEEMKMVWETQKIFGDDNIVVNPTAVRV 239
Query: 279 PVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVG 337
PV H+E+++L+ +P + + + +L++APG+ + + ++ +PT + E + D V VG
Sbjct: 240 PVFFGHSEAIHLETIQPAEAEDVKAVLRDAPGIELFE--SNEEYPTAVTESAGTDPVYVG 297
Query: 338 RIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
R+R+D+S +HG++++V D +RKGAALN+VQIAE+L+
Sbjct: 298 RVRKDISH--SHGINLWVVSDNIRKGAALNSVQIAEVLI 334
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Shewanella sp. (strain DB6705) (taxid: 126830) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q56734|DHAS_SHEVD Aspartate-semialdehyde dehydrogenase OS=Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) GN=asd PE=3 SV=2 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 148/339 (43%), Positives = 223/339 (65%), Gaps = 13/339 (3%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+V V+G +GAVGQ + +L +R+FP + LAS RSAG +SF K VE L D FD
Sbjct: 6 NVVVLGASGAVGQTMIEILEERNFPVAKLFPLASSRSAGGTVSFNGK--QVEILDVDDFD 63
Query: 101 G--VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
I FSAGG +S+K+ PIA E G +V+DN+S FR +VPLVIPEVNPEA++ +
Sbjct: 64 WSQAQIGFFSAGGDVSEKWAPIAAENGCVVIDNTSQFRYDNDVPLVIPEVNPEAIADFR- 122
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
+IANPNCSTI L+A P++ ++R+ V+TYQ+ SG+G A+ EL Q ++
Sbjct: 123 ---NRNIIANPNCSTIQMLVALKPIYDAFGISRINVATYQSVSGSGKEAITELAGQCSKL 179
Query: 219 LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRV 278
L+G P K++ +Q AFN+ +ENGY +EEMKMV ET+KI+ D ++ V T +RV
Sbjct: 180 LQGLPAESKVYPKQIAFNVLPQIDKFMENGYTKEEMKMVWETQKIFGDDNIVVNPTAVRV 239
Query: 279 PVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVG 337
PV H+E+++L+ +P + + + +L+ APG+ + + ++ +PT + E + D V VG
Sbjct: 240 PVFYGHSEAIHLETIQPAEAEDVKAVLREAPGIELFE--SNEEYPTAVTESAGTDPVYVG 297
Query: 338 RIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
R+R+D+S +HG++++V D +RKGAALN+VQIAE+L+
Sbjct: 298 RVRKDISH--SHGINLWVVSDNIRKGAALNSVQIAEVLI 334
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) (taxid: 637905) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q9ZK28|DHAS_HELPJ Aspartate-semialdehyde dehydrogenase OS=Helicobacter pylori (strain J99) GN=asd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/345 (43%), Positives = 215/345 (62%), Gaps = 23/345 (6%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+VA+VG +GAVGQE + L + FP + LAS RSAGK++ +K Y + E T + F+
Sbjct: 5 NVAIVGASGAVGQELIKGLENSFFPIKKFVPLASARSAGKKIRAFNKDYEILETTHEVFE 64
Query: 101 G--VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
+DIA FSAGGS+S++F I+ K ++V+DN+S FR+ ++VPLV+PE+N + + +
Sbjct: 65 KEEIDIAFFSAGGSVSEEFA-ISASKTALVIDNTSFFRLNKDVPLVVPEINAQEIFNAPL 123
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
+IANPNCSTI PLH K+ ++VSTYQA SGAG +E L+ + +
Sbjct: 124 N-----IIANPNCSTIQMTQILNPLHLHFKIKSVIVSTYQAVSGAGNKGIESLKNELKTA 178
Query: 219 LEG--KPPTCKI--------FSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD 268
LE K P + F+ AFN +H ENGY +EE+KMV ET KI D
Sbjct: 179 LEHLEKDPAIDLNQVLQAGAFAYPIAFNAIAHIDTFKENGYTKEELKMVHETHKIMG-VD 237
Query: 269 VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEV 328
++ATC+RVPV+R+H+ES+++ FEK D ++LKNAP VVV DD + N +PTPL+
Sbjct: 238 FPISATCVRVPVLRSHSESLSIAFEKEFDLKEVYEVLKNAPSVVVCDDPSHNLYPTPLKA 297
Query: 329 SNKDDVAVGRIRRDV-SQDGNHGLDIFVCGDQVRKGAALNAVQIA 372
S+ D V +GR+R+D+ + HG F DQ+R GAA NA++IA
Sbjct: 298 SHTDSVFIGRLRKDLFDKKTLHG---FCVADQLRVGAATNALKIA 339
|
Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate. Helicobacter pylori (strain J99) (taxid: 85963) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 376 | ||||||
| 224111424 | 375 | predicted protein [Populus trichocarpa] | 0.997 | 1.0 | 0.853 | 0.0 | |
| 255584961 | 377 | aspartate semialdehyde dehydrogenase, pu | 1.0 | 0.997 | 0.854 | 0.0 | |
| 224099567 | 375 | predicted protein [Populus trichocarpa] | 0.997 | 1.0 | 0.843 | 0.0 | |
| 357521393 | 379 | Aspartate-semialdehyde dehydrogenase [Me | 0.994 | 0.986 | 0.837 | 0.0 | |
| 356524624 | 377 | PREDICTED: aspartate-semialdehyde dehydr | 0.997 | 0.994 | 0.835 | 1e-180 | |
| 15223910 | 375 | semialdehyde dehydrogenase-like protein | 0.994 | 0.997 | 0.840 | 1e-179 | |
| 302353426 | 376 | aspartate-semialdehyde dehydrogenase 2 [ | 1.0 | 1.0 | 0.829 | 1e-178 | |
| 356513034 | 376 | PREDICTED: aspartate-semialdehyde dehydr | 1.0 | 1.0 | 0.824 | 1e-177 | |
| 359472657 | 379 | PREDICTED: aspartate-semialdehyde dehydr | 0.946 | 0.939 | 0.867 | 1e-176 | |
| 224147077 | 344 | predicted protein [Populus trichocarpa] | 0.914 | 1.0 | 0.886 | 1e-176 |
| >gi|224111424|ref|XP_002315850.1| predicted protein [Populus trichocarpa] gi|222864890|gb|EEF02021.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/376 (85%), Positives = 347/376 (92%), Gaps = 1/376 (0%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLS 60
MAT + +QTH +KL + KP+ +R+RM+ QE+APS+AVVGVTGAVGQEFLSVLS
Sbjct: 1 MATLTHPTSQTHLFTKL-SLKPKKFTSPSRIRMALQENAPSLAVVGVTGAVGQEFLSVLS 59
Query: 61 DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120
DRDFPYRSIKMLASKRSAGKQL+FQD+ YT+EELTEDSFDGVDIALFSAGGSISK FGP+
Sbjct: 60 DRDFPYRSIKMLASKRSAGKQLTFQDRNYTIEELTEDSFDGVDIALFSAGGSISKHFGPV 119
Query: 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180
AVEKGS+VVDNSSAFRM E +PLVIPEVNPEAM GIKVG GKGALIANPNCSTIICLMAA
Sbjct: 120 AVEKGSVVVDNSSAFRMEEGIPLVIPEVNPEAMEGIKVGTGKGALIANPNCSTIICLMAA 179
Query: 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
TPLH+ AKV RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTC IF QQYAFNLFSH
Sbjct: 180 TPLHKHAKVIRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCNIFKQQYAFNLFSH 239
Query: 241 NAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDT 300
NAP+L NGYNEEEMK+VKETRKIWND +V+VTATCIRVPVMRAHAESVNLQFEKP+DE T
Sbjct: 240 NAPILSNGYNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESVNLQFEKPIDEHT 299
Query: 301 ARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQV 360
A+DILK+APGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDG GLDIFVCGDQ+
Sbjct: 300 AKDILKSAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGYKGLDIFVCGDQI 359
Query: 361 RKGAALNAVQIAEMLL 376
RKGAALNA+QIAEMLL
Sbjct: 360 RKGAALNAIQIAEMLL 375
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584961|ref|XP_002533192.1| aspartate semialdehyde dehydrogenase, putative [Ricinus communis] gi|223526990|gb|EEF29184.1| aspartate semialdehyde dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/377 (85%), Positives = 345/377 (91%), Gaps = 1/377 (0%)
Query: 1 MATFSSHQTQTHFISKLP-ANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVL 59
MAT + Q H SK +KP+ P +R++MS QE+ PS+AVVGVTGAVGQEFLSVL
Sbjct: 1 MATLTHPHHQAHLFSKFSLKSKPKFTPSSSRIKMSLQETGPSLAVVGVTGAVGQEFLSVL 60
Query: 60 SDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119
SDR+FPYRSIKMLASKRSAGKQL+FQDK YTVEELT DSFDGVDIALFSAGGSISK+FGP
Sbjct: 61 SDRNFPYRSIKMLASKRSAGKQLTFQDKNYTVEELTADSFDGVDIALFSAGGSISKEFGP 120
Query: 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179
IAV+KGSIVVDNSSAFRMVE VPLVIPEVNPEAM IK G+ KGALIANPNCSTIICLMA
Sbjct: 121 IAVDKGSIVVDNSSAFRMVEGVPLVIPEVNPEAMKEIKFGLKKGALIANPNCSTIICLMA 180
Query: 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS 239
ATPLHR AKV RMVVSTYQAASGAGAAAMEELELQTREVL+GKPPTC IF QQYAFNLFS
Sbjct: 181 ATPLHRHAKVQRMVVSTYQAASGAGAAAMEELELQTREVLQGKPPTCTIFKQQYAFNLFS 240
Query: 240 HNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDED 299
HNAPV NGYNEEEMK+VKETRKIWND +V+VTATCIRVPVMRAHAESVNLQFEKPLDED
Sbjct: 241 HNAPVQSNGYNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESVNLQFEKPLDED 300
Query: 300 TARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQ 359
TARDILKNAPGVVVID+RASNHFPTPLEVSNKDDVAVGRIR+DVSQ+GNHGLDIFVCGDQ
Sbjct: 301 TARDILKNAPGVVVIDNRASNHFPTPLEVSNKDDVAVGRIRQDVSQEGNHGLDIFVCGDQ 360
Query: 360 VRKGAALNAVQIAEMLL 376
+RKGAALNA+QIAE+LL
Sbjct: 361 IRKGAALNAIQIAELLL 377
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099567|ref|XP_002311534.1| predicted protein [Populus trichocarpa] gi|222851354|gb|EEE88901.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/376 (84%), Positives = 349/376 (92%), Gaps = 1/376 (0%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLS 60
MA+ + +QT +KL +++P+ +R+RMS QE+APS+AVVGVTGAVGQEFLSVLS
Sbjct: 1 MASLAHPGSQTRLFTKL-SHQPKKFTPPSRIRMSLQENAPSLAVVGVTGAVGQEFLSVLS 59
Query: 61 DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120
DRDFPYRSIKMLASKRSAGKQL+FQD+ YT+EELTEDSFDGVDIALFSAGGSISK FGP+
Sbjct: 60 DRDFPYRSIKMLASKRSAGKQLTFQDRNYTIEELTEDSFDGVDIALFSAGGSISKHFGPV 119
Query: 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180
AV+KG+IVVDNSSAFRM E +PLVIPEVNPEAM GIKVGMGKGALIANPNCSTIICLMAA
Sbjct: 120 AVDKGAIVVDNSSAFRMEEGIPLVIPEVNPEAMEGIKVGMGKGALIANPNCSTIICLMAA 179
Query: 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
TPLHR AKV RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTC IF QQYAFNLFSH
Sbjct: 180 TPLHRHAKVQRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCNIFKQQYAFNLFSH 239
Query: 241 NAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDT 300
NAP+L NGYNEEEMK+VKETRKIWND +V+VTATCIRVPVMRAHAES+NLQF++PLDEDT
Sbjct: 240 NAPILSNGYNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESINLQFQQPLDEDT 299
Query: 301 ARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQV 360
A+DILK+ PGVVVIDDRASNHFPTPLEVSNKD+VAVGRIRRD+SQDGN GLDIFVCGDQ+
Sbjct: 300 AKDILKSTPGVVVIDDRASNHFPTPLEVSNKDNVAVGRIRRDLSQDGNKGLDIFVCGDQI 359
Query: 361 RKGAALNAVQIAEMLL 376
RKGAALNA+QIAEMLL
Sbjct: 360 RKGAALNAIQIAEMLL 375
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357521393|ref|XP_003630985.1| Aspartate-semialdehyde dehydrogenase [Medicago truncatula] gi|355525007|gb|AET05461.1| Aspartate-semialdehyde dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/381 (83%), Positives = 347/381 (91%), Gaps = 7/381 (1%)
Query: 1 MATFSSHQTQTHFIS-KLPANKPRTKPMFT----RVRMSYQESAPSVAVVGVTGAVGQEF 55
MA+ S Q F+S LP +P KP + RVRMS QE+AP++AVVGVTGAVGQEF
Sbjct: 1 MASSLSLLRQNTFLSATLPTTRP--KPKYASAPGRVRMSLQENAPTIAVVGVTGAVGQEF 58
Query: 56 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115
LSVLSDRDFPY SIKMLASKRSAG++++F+DK Y VEELT +SFDGVDIALFSAGGSISK
Sbjct: 59 LSVLSDRDFPYSSIKMLASKRSAGRRMTFEDKEYVVEELTAESFDGVDIALFSAGGSISK 118
Query: 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175
+FGPIAV +G+IVVDNSSAFRM ENVPLVIPEVNPEAM IKVGMGKGALIANPNCSTII
Sbjct: 119 EFGPIAVNRGTIVVDNSSAFRMDENVPLVIPEVNPEAMEKIKVGMGKGALIANPNCSTII 178
Query: 176 CLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAF 235
CLMAATPLHR AKV RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF++QYAF
Sbjct: 179 CLMAATPLHRHAKVLRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFNRQYAF 238
Query: 236 NLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKP 295
NLFSHNA VL NGYNEEEMK+VKETRKIWNDKDV+VTATCIRVPVMRAHAESVNLQFE+P
Sbjct: 239 NLFSHNASVLSNGYNEEEMKLVKETRKIWNDKDVKVTATCIRVPVMRAHAESVNLQFERP 298
Query: 296 LDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFV 355
LDEDTARDILKN+PGVVVIDDR SN+FPTPLEVSNKDDVAVGRIRRD+SQDGN GLDIF+
Sbjct: 299 LDEDTARDILKNSPGVVVIDDRESNNFPTPLEVSNKDDVAVGRIRRDLSQDGNQGLDIFI 358
Query: 356 CGDQVRKGAALNAVQIAEMLL 376
CGDQ+RKGAALNA+QIAE+LL
Sbjct: 359 CGDQIRKGAALNAIQIAELLL 379
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524624|ref|XP_003530928.1| PREDICTED: aspartate-semialdehyde dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 316/378 (83%), Positives = 345/378 (91%), Gaps = 3/378 (0%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFT--RVRMSYQESAPSVAVVGVTGAVGQEFLSV 58
M++ S + F LPA +P+ KP F+ R+RMS QE+ PS+AVVGVTGAVGQEFLSV
Sbjct: 1 MSSLSVSRHNHLFSGPLPA-RPKPKPSFSSSRIRMSLQENGPSIAVVGVTGAVGQEFLSV 59
Query: 59 LSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118
LSDRDFPY SIKMLASKRSAG++++F+D+ Y VEELT +SFDGVDIALFSAGGSISK FG
Sbjct: 60 LSDRDFPYSSIKMLASKRSAGRRITFEDRDYVVEELTAESFDGVDIALFSAGGSISKYFG 119
Query: 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178
PIAV++G++VVDNSSAFRM ENVPLVIPEVNPEAM IK G GKGALIANPNCSTIICLM
Sbjct: 120 PIAVDRGTVVVDNSSAFRMDENVPLVIPEVNPEAMQNIKAGTGKGALIANPNCSTIICLM 179
Query: 179 AATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF 238
AATPLHRRAKV RMVVSTYQAASGAGAAAMEEL+LQTREVLEGKPPTCKIF++QYAFNLF
Sbjct: 180 AATPLHRRAKVLRMVVSTYQAASGAGAAAMEELQLQTREVLEGKPPTCKIFNRQYAFNLF 239
Query: 239 SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDE 298
SHNA VL NGYNEEEMKMVKETRKIWN+KDV+VTATCIRVPVMRAHAESVNLQFE PLDE
Sbjct: 240 SHNASVLSNGYNEEEMKMVKETRKIWNNKDVKVTATCIRVPVMRAHAESVNLQFETPLDE 299
Query: 299 DTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGD 358
DTARDILKNAPGVVVIDDR SNHFPTPLEVSNKDDVAVGRIR+D+SQDGN GLDIFVCGD
Sbjct: 300 DTARDILKNAPGVVVIDDRESNHFPTPLEVSNKDDVAVGRIRQDLSQDGNQGLDIFVCGD 359
Query: 359 QVRKGAALNAVQIAEMLL 376
Q+RKGAALNA+QIAEMLL
Sbjct: 360 QIRKGAALNAIQIAEMLL 377
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223910|ref|NP_172934.1| semialdehyde dehydrogenase-like protein [Arabidopsis thaliana] gi|17979524|gb|AAL50097.1| At1g14810/F10B6_6 [Arabidopsis thaliana] gi|20856224|gb|AAM26654.1| At1g14810/F10B6_6 [Arabidopsis thaliana] gi|21536731|gb|AAM61063.1| aspartate-semialdehyde dehydrogenase, putative [Arabidopsis thaliana] gi|332191107|gb|AEE29228.1| semialdehyde dehydrogenase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 317/377 (84%), Positives = 340/377 (90%), Gaps = 3/377 (0%)
Query: 1 MATFSSHQTQTHFISKLPAN-KPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVL 59
MATF+ QTHF+S+LP KPR RV+MS QESAPS+AVVGVTGAVGQEFLSVL
Sbjct: 1 MATFTHQTPQTHFLSRLPLRAKPRH--FSARVKMSLQESAPSLAVVGVTGAVGQEFLSVL 58
Query: 60 SDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119
SDRDFPY SIKMLASKRSAGK+++F YTVEELT DSF+GVDIALFSAGGSISK+FGP
Sbjct: 59 SDRDFPYSSIKMLASKRSAGKRVAFDGHEYTVEELTADSFNGVDIALFSAGGSISKEFGP 118
Query: 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179
+A EKG+IVVDNSSAFRMV+ VPLVIPEVNPEAM GIKVGMGKGALIANPNCSTIICLMA
Sbjct: 119 LAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMGKGALIANPNCSTIICLMA 178
Query: 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS 239
TPLH AKV RMVVSTYQAASGAGAAAMEEL QTREVLEGKPPTC IF QQYAFNLFS
Sbjct: 179 VTPLHHHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFGQQYAFNLFS 238
Query: 240 HNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDED 299
HNAP+L+NGYNEEEMK+VKETRKIWND +V+VTATCIRVPVMRAHAESVNLQFE PLDE+
Sbjct: 239 HNAPILDNGYNEEEMKLVKETRKIWNDTEVKVTATCIRVPVMRAHAESVNLQFENPLDEN 298
Query: 300 TARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQ 359
TAR+ILK APGV +IDDRASN FPTPL+VSNKDDVAVGRIRRDVSQDGN GLDIFVCGDQ
Sbjct: 299 TAREILKKAPGVYIIDDRASNTFPTPLDVSNKDDVAVGRIRRDVSQDGNFGLDIFVCGDQ 358
Query: 360 VRKGAALNAVQIAEMLL 376
+RKGAALNAVQIAEMLL
Sbjct: 359 IRKGAALNAVQIAEMLL 375
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302353426|gb|ADL27919.1| aspartate-semialdehyde dehydrogenase 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 312/376 (82%), Positives = 339/376 (90%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLS 60
MA+ S + F LPA T +R+RMS +E+ PS+AVVGVTGAVGQEFLSVLS
Sbjct: 1 MASLSVLRHNHLFSGPLPARPKPTSSSSSRIRMSLRENGPSIAVVGVTGAVGQEFLSVLS 60
Query: 61 DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120
DRDFPYRSI MLASKRSAG++++F+D+ Y V+ELT +SFDGVDIALFSAGGSISK FGPI
Sbjct: 61 DRDFPYRSIHMLASKRSAGRRITFEDRDYVVQELTPESFDGVDIALFSAGGSISKHFGPI 120
Query: 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180
AV +G++VVDNSSAFRM E VPLVIPEVNPEAM IK G GKGALIANPNCSTIICLMAA
Sbjct: 121 AVNRGTVVVDNSSAFRMDEKVPLVIPEVNPEAMQNIKAGTGKGALIANPNCSTIICLMAA 180
Query: 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
TPLHRRAKV RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF++QYAFNLFSH
Sbjct: 181 TPLHRRAKVLRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFNRQYAFNLFSH 240
Query: 241 NAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDT 300
NA VL NGYNEEEMKMVKETRKIWNDKDV+VTATCIRVP+MRAHAESVNLQFE+PLDEDT
Sbjct: 241 NASVLSNGYNEEEMKMVKETRKIWNDKDVKVTATCIRVPIMRAHAESVNLQFERPLDEDT 300
Query: 301 ARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQV 360
ARDILKNAPGVVVIDDR SNHFPTPLEVSNKDDVAVGRIR+D+SQDGN GLDIFVCGDQ+
Sbjct: 301 ARDILKNAPGVVVIDDRESNHFPTPLEVSNKDDVAVGRIRQDLSQDGNQGLDIFVCGDQI 360
Query: 361 RKGAALNAVQIAEMLL 376
RKGAALNA+QIAEMLL
Sbjct: 361 RKGAALNAIQIAEMLL 376
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513034|ref|XP_003525219.1| PREDICTED: aspartate-semialdehyde dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 310/376 (82%), Positives = 338/376 (89%)
Query: 1 MATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLS 60
MA+ S + F LPA T +R+RMS +E+ PS+AVVGVTGAVGQEFLSVLS
Sbjct: 1 MASLSVLRHNHLFSGPLPARPKPTSSSSSRIRMSLRENGPSIAVVGVTGAVGQEFLSVLS 60
Query: 61 DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120
DRDFPYRSI MLASKRSAG++++F+D+ Y V+ELT +SFDGVDIALFSAGGSISK FGPI
Sbjct: 61 DRDFPYRSIHMLASKRSAGRRITFEDRDYVVQELTPESFDGVDIALFSAGGSISKHFGPI 120
Query: 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180
AV +G++VVDNSSAFRM E VPLVIPEVNPEAM IK G GKGALIANPNCSTIICLMAA
Sbjct: 121 AVNRGTVVVDNSSAFRMDEKVPLVIPEVNPEAMQNIKAGTGKGALIANPNCSTIICLMAA 180
Query: 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
TPLHRRAKV RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF++QYAFNLFSH
Sbjct: 181 TPLHRRAKVLRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFNRQYAFNLFSH 240
Query: 241 NAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDT 300
NA VL G+NEEEMKMVKETRKIWNDKDV+VTATCIRVP+MRAHAESVNLQFE+PLDEDT
Sbjct: 241 NASVLSKGFNEEEMKMVKETRKIWNDKDVKVTATCIRVPIMRAHAESVNLQFERPLDEDT 300
Query: 301 ARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQV 360
ARDILKNAPGVVVIDDR SNHFPTPLEVSNKDDVAVGRIR+D+SQDGN GLDIFVCGDQ+
Sbjct: 301 ARDILKNAPGVVVIDDRESNHFPTPLEVSNKDDVAVGRIRQDLSQDGNQGLDIFVCGDQI 360
Query: 361 RKGAALNAVQIAEMLL 376
RKGAALNA+QIAEMLL
Sbjct: 361 RKGAALNAIQIAEMLL 376
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472657|ref|XP_003631183.1| PREDICTED: aspartate-semialdehyde dehydrogenase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 309/356 (86%), Positives = 330/356 (92%)
Query: 21 KPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK 80
+PRT + +RMS QE+APS+AVVGVTGAVGQEFLSVLSDR FPYRSIKMLASKRSAGK
Sbjct: 24 RPRTATPTSTIRMSLQENAPSLAVVGVTGAVGQEFLSVLSDRGFPYRSIKMLASKRSAGK 83
Query: 81 QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN 140
L+F+D Y +EELT DSFDG+DIALFSAGGSISK+FGPIAV++GSIVVDNSSAFRM EN
Sbjct: 84 HLTFEDNDYVIEELTADSFDGIDIALFSAGGSISKQFGPIAVDRGSIVVDNSSAFRMDEN 143
Query: 141 VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAA 200
VPLVIPEVNP+AM IK+G GKGALIANPNCSTIICLMAATPLHR AKV RMVVSTYQAA
Sbjct: 144 VPLVIPEVNPDAMKHIKLGSGKGALIANPNCSTIICLMAATPLHRCAKVVRMVVSTYQAA 203
Query: 201 SGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET 260
SGAGAAAMEELELQTREVLEGK PTCKIF QQYAFNLFSHNAPVL NGYNEEEMK+VKET
Sbjct: 204 SGAGAAAMEELELQTREVLEGKQPTCKIFKQQYAFNLFSHNAPVLPNGYNEEEMKLVKET 263
Query: 261 RKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASN 320
RKIWND +V+VTATCIRVPVMRAHAESVNLQFE PLDED ARDILKNAPGVVVID+R SN
Sbjct: 264 RKIWNDMNVKVTATCIRVPVMRAHAESVNLQFENPLDEDKARDILKNAPGVVVIDERPSN 323
Query: 321 HFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+FPTPLEVSNKDDVAVGRIRRDVSQDGN GLDIFVCGDQ+RKGAALNA+QIAEMLL
Sbjct: 324 NFPTPLEVSNKDDVAVGRIRRDVSQDGNFGLDIFVCGDQIRKGAALNAIQIAEMLL 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224147077|ref|XP_002336402.1| predicted protein [Populus trichocarpa] gi|222834908|gb|EEE73357.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/344 (88%), Positives = 326/344 (94%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
M+ QE+APS+AVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL+FQD+ YT+E
Sbjct: 1 MALQENAPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLTFQDRNYTIE 60
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
ELTEDSFDGVDIALFSAGGSISK FGP+AVEKGS+VVDNSSAFRM E +PLVIPEVNPEA
Sbjct: 61 ELTEDSFDGVDIALFSAGGSISKHFGPVAVEKGSVVVDNSSAFRMEEGIPLVIPEVNPEA 120
Query: 153 MSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELE 212
M GIKVG GKGALIANPNCSTIICLMAATPLH+ AKV RMVVSTYQAASGAGAAAMEELE
Sbjct: 121 MEGIKVGTGKGALIANPNCSTIICLMAATPLHKHAKVIRMVVSTYQAASGAGAAAMEELE 180
Query: 213 LQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVT 272
LQTREVLEGKPPTC IF QQYAFNLFSHNAP+L NGYNEEEMK+VKETRKIWND +V+VT
Sbjct: 181 LQTREVLEGKPPTCNIFKQQYAFNLFSHNAPILSNGYNEEEMKLVKETRKIWNDMNVKVT 240
Query: 273 ATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKD 332
ATCIRVPVMRAHAESVNLQFEKP+DE TA+DILK++PGVVVIDD ASNHFPTPLEVSNKD
Sbjct: 241 ATCIRVPVMRAHAESVNLQFEKPIDEYTAKDILKSSPGVVVIDDPASNHFPTPLEVSNKD 300
Query: 333 DVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
DVAVGRI RDVSQDG GLD+FVCGDQ+RKGAALNA+QIAEMLL
Sbjct: 301 DVAVGRICRDVSQDGYKGLDMFVCGDQIRKGAALNAIQIAEMLL 344
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 376 | ||||||
| TAIR|locus:2006867 | 375 | AT1G14810 [Arabidopsis thalian | 0.992 | 0.994 | 0.796 | 9.2e-155 | |
| TIGR_CMR|DET_0972 | 338 | DET_0972 "aspartate-semialdehy | 0.840 | 0.934 | 0.472 | 8.4e-74 | |
| TIGR_CMR|CHY_1154 | 339 | CHY_1154 "aspartate-semialdehy | 0.835 | 0.926 | 0.479 | 1.1e-71 | |
| TIGR_CMR|ECH_0016 | 336 | ECH_0016 "aspartate-semialdehy | 0.835 | 0.934 | 0.436 | 5.6e-68 | |
| TIGR_CMR|CPS_3805 | 339 | CPS_3805 "aspartate-semialdehy | 0.827 | 0.917 | 0.456 | 3.1e-67 | |
| TIGR_CMR|SPO_3712 | 340 | SPO_3712 "aspartate-semialdehy | 0.835 | 0.923 | 0.441 | 7.4e-66 | |
| UNIPROTKB|P23247 | 337 | asd2 "Aspartate-semialdehyde d | 0.837 | 0.934 | 0.433 | 4.1e-65 | |
| TIGR_CMR|VC_2107 | 337 | VC_2107 "aspartate-semialdehyd | 0.837 | 0.934 | 0.433 | 4.1e-65 | |
| TIGR_CMR|BA_3937 | 348 | BA_3937 "aspartate-semialdehyd | 0.840 | 0.908 | 0.424 | 1.8e-64 | |
| TIGR_CMR|SO_3070 | 338 | SO_3070 "aspartate semialdehyd | 0.840 | 0.934 | 0.403 | 6e-64 |
| TAIR|locus:2006867 AT1G14810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1509 (536.3 bits), Expect = 9.2e-155, P = 9.2e-155
Identities = 301/378 (79%), Positives = 323/378 (85%)
Query: 1 MATFSSHQT-QTHFISKLPAN-KPRTKPMFTRVRMSYQESAPSXXXXXXXXXXXQEFLSV 58
MATF+ HQT QTHF+S+LP KPR RV+MS QESAPS QEFLSV
Sbjct: 1 MATFT-HQTPQTHFLSRLPLRAKPRH--FSARVKMSLQESAPSLAVVGVTGAVGQEFLSV 57
Query: 59 LSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118
LSDRDFPY SIKMLASKRSAGK+++F YTVEELT DSF+GVDIALFSAGGSISK+FG
Sbjct: 58 LSDRDFPYSSIKMLASKRSAGKRVAFDGHEYTVEELTADSFNGVDIALFSAGGSISKEFG 117
Query: 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178
P+A EKG+IVVDNSSAFRMV+ VPLVIPEVNPEAM GIKVGMGKGALIANPNCSTIICLM
Sbjct: 118 PLAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMGKGALIANPNCSTIICLM 177
Query: 179 AATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAFNLF 238
A TPLH AKV RMVVSTYQ MEEL QTREVLEGKPPTC IF QQYAFNLF
Sbjct: 178 AVTPLHHHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEGKPPTCNIFGQQYAFNLF 237
Query: 239 SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDE 298
SHNAP+L+NGYNEEEMK+VKETRKIWND +V+VTATCIRVPVMRAHAESVNLQFE PLDE
Sbjct: 238 SHNAPILDNGYNEEEMKLVKETRKIWNDTEVKVTATCIRVPVMRAHAESVNLQFENPLDE 297
Query: 299 DTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGD 358
+TAR+ILK APGV +IDDRASN FPTPL+VSNKDDVAVGRIRRDVSQDGN GLDIFVCGD
Sbjct: 298 NTAREILKKAPGVYIIDDRASNTFPTPLDVSNKDDVAVGRIRRDVSQDGNFGLDIFVCGD 357
Query: 359 QVRKGAALNAVQIAEMLL 376
Q+RKGAALNAVQIAEMLL
Sbjct: 358 QIRKGAALNAVQIAEMLL 375
|
|
| TIGR_CMR|DET_0972 DET_0972 "aspartate-semialdehyde dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 153/324 (47%), Positives = 221/324 (68%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
QEF+ VL RDFP ++ +LAS RSAGK++ + + V E DSF+ VDIALFSAG
Sbjct: 16 QEFIKVLEKRDFPMDTVSLLASDRSAGKKMMVKGEEIEVRETAYDSFNNVDIALFSAGAD 75
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
IS+ F PIA + +IVVDNS+AFRM VPLV+PEVN E ++ KG +IANPNCS
Sbjct: 76 ISRHFAPIAAQHKAIVVDNSAAFRMDPKVPLVVPEVNIEDIT-----RHKG-IIANPNCS 129
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
TI ++A PLH+ + R+VV+T+Q ++EL+ QTR++L+G+ ++S Q
Sbjct: 130 TIQMVVALYPLHKVNPIKRIVVTTFQAVSGTGVNAVDELQTQTRQLLDGQKAVAHVYSHQ 189
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQF 292
AFN+ L++GY +EE KM++ETRKI + +++++ATC+RVPV+ H+E+V ++F
Sbjct: 190 IAFNVLPEIDVFLDSGYTKEEWKMLEETRKIMHADNIQLSATCVRVPVITGHSEAVTIEF 249
Query: 293 EKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLD 352
E+P++ + ARDIL +PG+ V+D+ A +P P + D+V VGRIR+D+S +GL
Sbjct: 250 ERPMEPEQARDILLRSPGIKVLDEPAVKLYPHPWLATGTDEVFVGRIRKDISNP--NGLV 307
Query: 353 IFVCGDQVRKGAALNAVQIAEMLL 376
++V D VRKGAALNAVQIAE L+
Sbjct: 308 MWVVADNVRKGAALNAVQIAEELV 331
|
|
| TIGR_CMR|CHY_1154 CHY_1154 "aspartate-semialdehyde dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 155/323 (47%), Positives = 215/323 (66%)
Query: 54 EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113
E L +L +R+FP + +++ A+ RSAGK++ F+ + Y V E T + FDG+DIALF AGGS
Sbjct: 17 EILKILEERNFPVKELRLGATSRSAGKEVVFRGETYKVLETTPEIFDGMDIALF-AGGSA 75
Query: 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173
SK+F IA KG V+DNSSAFR+ +VPLV+PEVNPE V KG +IANPNCST
Sbjct: 76 SKEFARIAAAKGVTVIDNSSAFRLEPDVPLVVPEVNPE-----DVKWHKG-IIANPNCST 129
Query: 174 IICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQY 233
I ++A PLH K+ R+VVSTYQ +EEL+ Q + L G+ +F
Sbjct: 130 IQMVVALKPLHDYGKIKRVVVSTYQAVSGAGIEAIEELKQQVKAYLNGEEAVPNVFPYPI 189
Query: 234 AFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFE 293
AFNL H + Y +EE KMV ET+KI +D +++VTAT +RVPV R+H+ES+N++ E
Sbjct: 190 AFNLIPHIDVFQDMYYTKEEWKMVLETQKIMHDPEIKVTATTVRVPVFRSHSESINIETE 249
Query: 294 KPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDI 353
+ + A ++LK APGV VID+ +P PL S++D+V VGRIR D + ++GL++
Sbjct: 250 IKITREKAIELLKKAPGVKVIDNPEEKLYPMPLYASDQDEVFVGRIREDNTI--SNGLNL 307
Query: 354 FVCGDQVRKGAALNAVQIAEMLL 376
+V DQ+RKGAA NAVQIAE+L+
Sbjct: 308 WVVADQLRKGAATNAVQIAELLI 330
|
|
| TIGR_CMR|ECH_0016 ECH_0016 "aspartate-semialdehyde dehydrogenase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 140/321 (43%), Positives = 212/321 (66%)
Query: 56 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115
L++L+ R FP + + LASK+S GK+LS+ D+ ++L +F DIA+FSAG SIS+
Sbjct: 19 LNILASRSFPAKEVVALASKKSIGKKLSYGDEVLESQDLDSYNFTNTDIAIFSAGSSISQ 78
Query: 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175
++ A KG I++DN+S FRM + +PLV+PE+NPE ++ K +IANPNCSTI
Sbjct: 79 QYARTAANKGCIIIDNTSLFRMEDEIPLVVPEINPEDIAQYY----KHNIIANPNCSTIQ 134
Query: 176 CLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQYAF 235
L+A PLH+ +K+ R+VVSTYQ M+EL QT+ + K F+++ AF
Sbjct: 135 MLLALNPLHKISKIKRVVVSTYQSVSGAGKSAMDELYSQTKGTFMNQNIAPKQFTKRIAF 194
Query: 236 NLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKP 295
N H +E+G +EE KM ET+KI D ++ V+ATC+RVPV +H+ES+N++F
Sbjct: 195 NCIPHIDVFMEDGSTKEEWKMAVETKKIL-DNNIEVSATCVRVPVFVSHSESLNVEFLSE 253
Query: 296 LDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFV 355
+ E+ A + L+NAPGV+++D R + TPL+ ++D+V V R+R+D + HGL++++
Sbjct: 254 ISEEEAYEALENAPGVIILDRREDGGYATPLDSVHEDEVYVSRLRKDNTV--KHGLNMWL 311
Query: 356 CGDQVRKGAALNAVQIAEMLL 376
D +RKGAALNAVQIAE+L+
Sbjct: 312 VSDNLRKGAALNAVQIAEILV 332
|
|
| TIGR_CMR|CPS_3805 CPS_3805 "aspartate-semialdehyde dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 148/324 (45%), Positives = 203/324 (62%)
Query: 56 LSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD--GVDIALFSAGGSI 113
+ +L +R FP + LAS RSAG+ + F ++ +E L D FD V I FSAGGS
Sbjct: 21 MEILEERKFPINKLYPLASARSAGEIIEFNGQS--IEVLNADDFDFSQVQIGFFSAGGST 78
Query: 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173
S KF PIA E G IV+DN+S FR ++PLV+PEVNPEA++ + +IANPNCST
Sbjct: 79 SAKFAPIAAEAGCIVIDNTSEFRYDADIPLVVPEVNPEALADYR----NRNIIANPNCST 134
Query: 174 IICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQY 233
I L+A P++ ++R+ VSTYQ M+EL QT +L GKP K FS+Q
Sbjct: 135 IQMLVALKPIYDAVGISRVNVSTYQSVSGGGKEAMDELAKQTANLLSGKPVESKKFSRQI 194
Query: 234 AFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFE 293
AFN+ LENGY +EEMKMV ET+KI D++V V T +RVPV H E+++++
Sbjct: 195 AFNVIPQIDDFLENGYTKEEMKMVWETKKILGDENVLVNPTAVRVPVFFGHGEALHIETN 254
Query: 294 KPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQDGNHGLD 352
P+ D +D+L+ APG+VV R FPT + + S KDD VGRIR D+S + G++
Sbjct: 255 SPISADEVKDLLEQAPGIVVC--RNDEDFPTQIGDASGKDDTYVGRIREDISH--SCGIN 310
Query: 353 IFVCGDQVRKGAALNAVQIAEMLL 376
+++ D VRKGAA N+VQIAE+L+
Sbjct: 311 MWIVADNVRKGAATNSVQIAELLV 334
|
|
| TIGR_CMR|SPO_3712 SPO_3712 "aspartate-semialdehyde dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 144/326 (44%), Positives = 205/326 (62%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
+E L++L++R FP I LAS++S G ++SF DK ++L F G D+ALF+ G
Sbjct: 16 REMLNILAERQFPVDEIAALASRKSLGTEVSFGDKTIKTQDLDTFDFTGWDMALFAIGSD 75
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+K + P A G +V+DNSS +R ++PL++PE NP+A+ G K +IANPNCS
Sbjct: 76 ATKVYAPKAAAAGCVVIDNSSLYRYDPDIPLIVPECNPQAVHGY----AKKNIIANPNCS 131
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGK---PPTCKIF 229
T ++A PLH RA + R+VVSTYQ M+EL QT+ V PP K F
Sbjct: 132 TAQMVVALKPLHDRATIKRVVVSTYQSVSGAGKDGMDELWEQTKAVYNPTSDVPP--KKF 189
Query: 230 SQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVN 289
++ AFN+ H +E+G +EE KMV ET+KI D ++VTATC+RVPV H+ES+N
Sbjct: 190 QKEIAFNVIPHIDVFMEDGSTKEEWKMVAETKKIV-DPSIKVTATCVRVPVFVGHSESIN 248
Query: 290 LQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNH 349
++FE+ LDED ARDIL+ +PG++VID R + TP E + RIR+D + + +
Sbjct: 249 IEFEEFLDEDEARDILRESPGIMVIDKREPGGYVTPKECVGDFATFISRIRQDSTVE--N 306
Query: 350 GLDIFVCGDQVRKGAALNAVQIAEML 375
GL+++ D +RKGAALNAVQIAE+L
Sbjct: 307 GLNLWCVSDNLRKGAALNAVQIAELL 332
|
|
| UNIPROTKB|P23247 asd2 "Aspartate-semialdehyde dehydrogenase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 141/325 (43%), Positives = 202/325 (62%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
+ L VL +R+FP + +LAS+RS GK F K V+ + E + V IALFSAGG
Sbjct: 18 ETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGE 77
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ + +IANPNCS
Sbjct: 78 LSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR----NRNIIANPNCS 133
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
TI L+A P++ + R+ V+TYQ ++EL QT ++L G P FSQQ
Sbjct: 134 TIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQ 193
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQF 292
AFN ++NGY +EEMKMV ET+KI+ND + V TC+RVPV HAE+V+++
Sbjct: 194 IAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVET 253
Query: 293 EKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQDGNHGL 351
P+D + D+L+ G+ + R ++ FPT + + KD V VGR+R D+S + G+
Sbjct: 254 RAPIDAEQVMDMLEQTDGIELF--RGAD-FPTQVRDAGGKDHVLVGRVRNDISH--HSGI 308
Query: 352 DIFVCGDQVRKGAALNAVQIAEMLL 376
+++V D VRKGAA NAVQIAE+L+
Sbjct: 309 NLWVVADNVRKGAATNAVQIAELLV 333
|
|
| TIGR_CMR|VC_2107 VC_2107 "aspartate-semialdehyde dehydrogenase, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 141/325 (43%), Positives = 202/325 (62%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
+ L VL +R+FP + +LAS+RS GK F K V+ + E + V IALFSAGG
Sbjct: 18 ETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGE 77
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ + +IANPNCS
Sbjct: 78 LSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR----NRNIIANPNCS 133
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
TI L+A P++ + R+ V+TYQ ++EL QT ++L G P FSQQ
Sbjct: 134 TIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQ 193
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQF 292
AFN ++NGY +EEMKMV ET+KI+ND + V TC+RVPV HAE+V+++
Sbjct: 194 IAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVET 253
Query: 293 EKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQDGNHGL 351
P+D + D+L+ G+ + R ++ FPT + + KD V VGR+R D+S + G+
Sbjct: 254 RAPIDAEQVMDMLEQTDGIELF--RGAD-FPTQVRDAGGKDHVLVGRVRNDISH--HSGI 308
Query: 352 DIFVCGDQVRKGAALNAVQIAEMLL 376
+++V D VRKGAA NAVQIAE+L+
Sbjct: 309 NLWVVADNVRKGAATNAVQIAELLV 333
|
|
| TIGR_CMR|BA_3937 BA_3937 "aspartate-semialdehyde dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
Identities = 141/332 (42%), Positives = 213/332 (64%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
++ L+ L R+FP + +L+SKRSAGK+L F+ + +TV+E T +SF+GVDIALFSAGGS
Sbjct: 20 EQMLNTLEKREFPIGKLTLLSSKRSAGKKLVFKGEEFTVQEATPESFEGVDIALFSAGGS 79
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+SK+ P A ++G+IVVDN+SAFRM ENVPLV+PEVN + +K G +IANPNCS
Sbjct: 80 VSKQLAPEAAKRGAIVVDNTSAFRMTENVPLVVPEVNE---NDLKEHNG---IIANPNCS 133
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIF--- 229
TI ++A P+ ++ + R++VSTYQ +EEL Q++ +L G+ +
Sbjct: 134 TIQMVVALEPVRQQYGLKRVIVSTYQAVSGAGAAAIEELHEQSQAILNGEEVKANVLPVS 193
Query: 230 -SQQY---AFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHA 285
+++ AFN +NG+ EEMKM+ ET+KI + ++ V ATC+R+PV+ H+
Sbjct: 194 GDKKHFPIAFNAIPQIDKFQDNGFTFEEMKMINETKKIMHMPELEVAATCVRLPVVSGHS 253
Query: 286 ESVNLQFEKP-LDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVS 344
ESV ++ EK + + + +L NA G+V+ D+ +P P K++V VGRIR+D++
Sbjct: 254 ESVYIEVEKEGVTVEELKSLLANAEGIVLQDNPEEQLYPMPATAVGKNEVFVGRIRKDLN 313
Query: 345 QDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
D G ++V D + KGAA N+VQIAE L+
Sbjct: 314 ND--KGFHLWVVSDNLLKGAAWNSVQIAERLV 343
|
|
| TIGR_CMR|SO_3070 SO_3070 "aspartate semialdehyde dehydrogenese" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 131/325 (40%), Positives = 207/325 (63%)
Query: 53 QEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112
Q + +L +R+FP ++ LAS RSAG+ +SF K T+ ++ + + FSAGG
Sbjct: 18 QTMIEILEERNFPVANLYPLASSRSAGETVSFHGKQITILDVETFDWSQAQLGFFSAGGD 77
Query: 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172
+S K+ PIA E G +V+DN+S FR ++PLV+PEVNP A++ + +IANPNCS
Sbjct: 78 VSAKWAPIAAEAGCVVIDNTSHFRYDIDIPLVVPEVNPHAIADFR----NRNIIANPNCS 133
Query: 173 TIICLMAATPLHRRAKVTRMVVSTYQXXXXXXXXXMEELELQTREVLEGKPPTCKIFSQQ 232
TI L+A P++ ++R+ V+TYQ +EEL Q ++L+G P +++ +Q
Sbjct: 134 TIQMLVALKPIYDTYGISRINVATYQSVSGTGKKAIEELARQCTKLLQGLPAEAEVYPKQ 193
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQF 292
AFN+ ++NGY +EEMKMV ET+KI+ D D+ V AT +RVPV H+E+V+++
Sbjct: 194 IAFNVLPQIDKFMDNGYTKEEMKMVWETQKIFGDDDILVNATAVRVPVFYGHSEAVHIET 253
Query: 293 EKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQDGNHGL 351
+P D + + +L+NA GVV+ + + + +PT + + D V VGR+R+D+S HG+
Sbjct: 254 RQPADAEDIKALLRNAEGVVLFE--SDDEYPTAVTHAAGTDPVYVGRVRKDISHA--HGI 309
Query: 352 DIFVCGDQVRKGAALNAVQIAEMLL 376
+++V D +RKGAALN+VQIAE+L+
Sbjct: 310 NLWVVSDNIRKGAALNSVQIAEILV 334
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O26890 | DHAS_METTH | 1, ., 2, ., 1, ., 1, 1 | 0.3007 | 0.8005 | 0.8674 | yes | no |
| O31219 | DHAS_LEGPN | 1, ., 2, ., 1, ., 1, 1 | 0.4642 | 0.875 | 0.9481 | yes | no |
| O67716 | DHAS_AQUAE | 1, ., 2, ., 1, ., 1, 1 | 0.5074 | 0.875 | 0.9676 | yes | no |
| Q56734 | DHAS_SHEVD | 1, ., 2, ., 1, ., 1, 1 | 0.4365 | 0.8670 | 0.9644 | yes | no |
| P41404 | DHAS_MYCSM | 1, ., 2, ., 1, ., 1, 1 | 0.4040 | 0.8670 | 0.9421 | yes | no |
| P10539 | DHAS_STRMU | 1, ., 2, ., 1, ., 1, 1 | 0.4166 | 0.8643 | 0.9078 | yes | no |
| O25801 | DHAS_HELPY | 1, ., 2, ., 1, ., 1, 1 | 0.4347 | 0.8563 | 0.9306 | yes | no |
| Q1RIB3 | DHAS_RICBR | 1, ., 2, ., 1, ., 1, 1 | 0.4112 | 0.8696 | 0.9674 | yes | no |
| P23247 | DHAS2_VIBCH | 1, ., 2, ., 1, ., 1, 1 | 0.4569 | 0.8696 | 0.9703 | yes | no |
| Q4UM57 | DHAS_RICFE | 1, ., 2, ., 1, ., 1, 1 | 0.4017 | 0.875 | 0.9733 | yes | no |
| P49420 | DHAS_PROMA | 1, ., 2, ., 1, ., 1, 1 | 0.4942 | 0.8936 | 0.9795 | yes | no |
| Q92IJ0 | DHAS_RICCN | 1, ., 2, ., 1, ., 1, 1 | 0.4077 | 0.875 | 0.9733 | yes | no |
| P0A542 | DHAS_MYCTU | 1, ., 2, ., 1, ., 1, 1 | 0.4080 | 0.8643 | 0.9420 | yes | no |
| P0A543 | DHAS_MYCBO | 1, ., 2, ., 1, ., 1, 1 | 0.4080 | 0.8643 | 0.9420 | yes | no |
| P0C1D8 | DHAS_CORGL | 1, ., 2, ., 1, ., 1, 1 | 0.3892 | 0.8643 | 0.9447 | yes | no |
| Q68X56 | DHAS_RICTY | 1, ., 2, ., 1, ., 1, 1 | 0.4017 | 0.875 | 0.9733 | yes | no |
| Q9ZDL2 | DHAS_RICPR | 1, ., 2, ., 1, ., 1, 1 | 0.3928 | 0.875 | 0.9733 | yes | no |
| Q9ZK28 | DHAS_HELPJ | 1, ., 2, ., 1, ., 1, 1 | 0.4347 | 0.8563 | 0.9306 | yes | no |
| Q59291 | DHAS_CAMJE | 1, ., 2, ., 1, ., 1, 1 | 0.4678 | 0.8643 | 0.9475 | yes | no |
| Q04797 | DHAS_BACSU | 1, ., 2, ., 1, ., 1, 1 | 0.4534 | 0.8617 | 0.9364 | yes | no |
| Q55512 | DHAS_SYNY3 | 1, ., 2, ., 1, ., 1, 1 | 0.5253 | 0.8696 | 0.9674 | N/A | no |
| P96199 | USG_AZOVI | No assigned EC number | 0.3154 | 0.8643 | 0.9672 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 376 | |||
| PLN02383 | 344 | PLN02383, PLN02383, aspartate semialdehyde dehydro | 0.0 | |
| PRK14874 | 334 | PRK14874, PRK14874, aspartate-semialdehyde dehydro | 1e-179 | |
| COG0136 | 334 | COG0136, Asd, Aspartate-semialdehyde dehydrogenase | 1e-138 | |
| TIGR01296 | 338 | TIGR01296, asd_B, aspartate-semialdehyde dehydroge | 1e-135 | |
| PRK06728 | 347 | PRK06728, PRK06728, aspartate-semialdehyde dehydro | 2e-82 | |
| PRK05671 | 336 | PRK05671, PRK05671, aspartate-semialdehyde dehydro | 1e-61 | |
| PRK08040 | 336 | PRK08040, PRK08040, putative semialdehyde dehydrog | 8e-60 | |
| PRK08664 | 349 | PRK08664, PRK08664, aspartate-semialdehyde dehydro | 1e-56 | |
| TIGR00978 | 341 | TIGR00978, asd_EA, aspartate-semialdehyde dehydrog | 2e-44 | |
| pfam01118 | 121 | pfam01118, Semialdhyde_dh, Semialdehyde dehydrogen | 6e-38 | |
| pfam02774 | 167 | pfam02774, Semialdhyde_dhC, Semialdehyde dehydroge | 3e-35 | |
| smart00859 | 123 | smart00859, Semialdhyde_dh, Semialdehyde dehydroge | 1e-32 | |
| TIGR01745 | 366 | TIGR01745, asd_gamma, aspartate-semialdehyde dehyd | 2e-24 | |
| PRK06598 | 369 | PRK06598, PRK06598, aspartate-semialdehyde dehydro | 3e-24 | |
| COG0002 | 349 | COG0002, ArgC, Acetylglutamate semialdehyde dehydr | 1e-11 | |
| PRK00436 | 343 | PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate | 2e-09 | |
| TIGR01850 | 346 | TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate | 7e-09 | |
| PRK06901 | 322 | PRK06901, PRK06901, aspartate-semialdehyde dehydro | 2e-08 | |
| PLN02968 | 381 | PLN02968, PLN02968, Probable N-acetyl-gamma-glutam | 2e-04 |
| >gnl|CDD|178009 PLN02383, PLN02383, aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 689 bits (1779), Expect = 0.0
Identities = 291/344 (84%), Positives = 319/344 (92%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
M+ E+ PSVA+VGVTGAVGQEFLSVL+DRDFPY S+KMLAS RSAGK+++F+ + YTVE
Sbjct: 1 MALTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVE 60
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
ELTEDSFDGVDIALFSAGGSISKKFGPIAV+KG++VVDNSSAFRM E VPLVIPEVNPEA
Sbjct: 61 ELTEDSFDGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEA 120
Query: 153 MSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELE 212
M IK+G GKGALIANPNCSTIICLMA TPLHR AKV RMVVSTYQAASGAGAAAMEELE
Sbjct: 121 MKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELE 180
Query: 213 LQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVT 272
QTREVLEGKPPTC IF+QQYAFNLFSHNAP+ ENGYNEEEMK+VKETRKIWND DV+VT
Sbjct: 181 QQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVT 240
Query: 273 ATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKD 332
ATCIRVPVMRAHAES+NLQFEKPLDE TAR+IL +APGV +IDDRA+N FPTPL+ SNKD
Sbjct: 241 ATCIRVPVMRAHAESINLQFEKPLDEATAREILASAPGVKIIDDRANNRFPTPLDASNKD 300
Query: 333 DVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
DVAVGRIR+D+SQDGN GLDIFVCGDQ+RKGAALNAVQIAE+LL
Sbjct: 301 DVAVGRIRQDISQDGNKGLDIFVCGDQIRKGAALNAVQIAELLL 344
|
Length = 344 |
| >gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 499 bits (1288), Expect = e-179
Identities = 188/337 (55%), Positives = 246/337 (72%), Gaps = 8/337 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG+E L++L +R+FP +++LAS RSAGK+LSF+ K VE+LT F G
Sbjct: 4 VAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSG 63
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VDIALFSAGGS+SKK+ P A G++V+DNSSAFRM +VPLV+PEVNPEA++ +
Sbjct: 64 VDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHR---K 120
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
KG +IANPNCSTI ++A PLH A + R+VVSTYQA SGAG A MEEL QTR VL
Sbjct: 121 KG-IIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNA 179
Query: 222 K--PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVP 279
P K F + AFN+ H +++GY +EEMKMV ET+KI D D++V+ATC+RVP
Sbjct: 180 AVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDLKVSATCVRVP 239
Query: 280 VMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRI 339
V H+ESVN++FE+P+ + AR+IL APGVV++DD + +PTPLE KD VGRI
Sbjct: 240 VFTGHSESVNIEFEEPISVEEAREILAEAPGVVLVDDPENGGYPTPLEAVGKDATFVGRI 299
Query: 340 RRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
R+D++ + +GL ++V D +RKGAALNAVQIAE+L+
Sbjct: 300 RKDLTVE--NGLHLWVVSDNLRKGAALNAVQIAELLI 334
|
Length = 334 |
| >gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 396 bits (1020), Expect = e-138
Identities = 169/340 (49%), Positives = 224/340 (65%), Gaps = 14/340 (4%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELTEDSFD 100
VAV+G TGAVGQ L +L +R FP+ + +LAS RSAGK+ + F K+ V E D F
Sbjct: 4 VAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFV 63
Query: 101 --GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
VDI F+AGGS+SK+ P A E G +V+DNSSAFRM +VPLV+PEVNPE + +
Sbjct: 64 FSDVDIVFFAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ- 122
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
+G +IANPNCSTI ++A PLH + R+VVSTYQA SGAGA EL QT +
Sbjct: 123 --KRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDAL 180
Query: 219 LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRV 278
L G P AFN+ H L+NGY +EE K+ ETRKI D D++V+ATC+RV
Sbjct: 181 LNGIPILPI--GYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRV 238
Query: 279 PVMRAHAESVNLQFEKPLDEDTAR-DILKNAPGVVVIDDRASNHFP-TPLEVSNKDDVAV 336
PV H+E+V ++F+K +D + R ++L +APGVVV+D+ P TPL+ + D+V+V
Sbjct: 239 PVFYGHSEAVTVEFKKDVDPEEIREELLPSAPGVVVVDNP--EDRPQTPLDATGGDEVSV 296
Query: 337 GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
GRIR+D+S GL ++V GD +RKGAALNAV IAE+LL
Sbjct: 297 GRIRKDLSGP--EGLKLWVVGDNLRKGAALNAVLIAELLL 334
|
Length = 334 |
| >gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Score = 388 bits (999), Expect = e-135
Identities = 178/341 (52%), Positives = 236/341 (69%), Gaps = 12/341 (3%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
+VA+VG TGAVGQE L +L +R+FP + +LAS RSAG++L+F+ K VEE +SF+
Sbjct: 1 NVAIVGATGAVGQEMLKLLEERNFPIDKLVLLASARSAGRKLTFKGKELEVEEAETESFE 60
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
G+DIALFSAGGS+SK+F P A + G IV+DN+SAFRM +VPLV+PEVN E +
Sbjct: 61 GIDIALFSAGGSVSKEFAPKAAKAGVIVIDNTSAFRMDPDVPLVVPEVNFEDLKEFN--- 117
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
+IANPNCSTI ++ PLH AK+ R+VVSTYQA SGAG A +EEL QT+ VLE
Sbjct: 118 -PKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAVLE 176
Query: 221 GK------PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTAT 274
G P F Q AFN H +++GY +EE KM+ ETRKI D++V+AT
Sbjct: 177 GAEQLPYIQPKANKFPYQIAFNAIPHIDSFVDDGYTKEEQKMLFETRKIMGIPDLKVSAT 236
Query: 275 CIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDV 334
C+RVPV H+ES+N++FEK + + AR++LKNAPGV +IDD + N +PTPL D+V
Sbjct: 237 CVRVPVFTGHSESINIEFEKEISPEDARELLKNAPGVQLIDDPSGNLYPTPLAAVGVDEV 296
Query: 335 AVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375
VGRIR+D+ +GL ++V D +RKGAALN+VQIAE+L
Sbjct: 297 FVGRIRKDLPDG--NGLHLWVVADNLRKGAALNSVQIAELL 335
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978 [Amino acid biosynthesis, Aspartate family]. Length = 338 |
| >gnl|CDD|136022 PRK06728, PRK06728, aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 255 bits (652), Expect = 2e-82
Identities = 139/348 (39%), Positives = 213/348 (61%), Gaps = 16/348 (4%)
Query: 37 ESAPSVAVVGVTGAVGQEFLSVL-SDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT 95
E VAVVG TGAVGQ+ + +L + F + +L+SKRSAGK + F+ + ++E
Sbjct: 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAK 62
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+SF+GVDIA FSAGG +S++F AV G+IV+DN+S +RM +VPLV+PEVN +
Sbjct: 63 INSFEGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE 122
Query: 156 IKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQT 215
K +IA PNCS + + A P+ + + R++VSTYQA SG+G A++EL+ Q
Sbjct: 123 HK------GIIAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQA 176
Query: 216 REVLEGKPPTCKIF-----SQQY--AFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD 268
+ +L G+ I + Y AFN+ +N + EE+KM++ET+KI D +
Sbjct: 177 KSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPN 236
Query: 269 VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEV 328
+++ ATC+RVPV+ H+ESV ++ EK +++L +APGV++ D+ + +P PL
Sbjct: 237 LKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYA 296
Query: 329 SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
K D VGRIR+D D +G +++ D + KGAA N+VQIAE ++
Sbjct: 297 EGKIDTFVGRIRKD--PDTPNGFHLWIVSDNLLKGAAWNSVQIAETMV 342
|
Length = 347 |
| >gnl|CDD|168165 PRK05671, PRK05671, aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 1e-61
Identities = 115/336 (34%), Positives = 179/336 (53%), Gaps = 11/336 (3%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
+AVVG TG VG+ + +L +RDFP ++ +LAS SAG + F K V E+ F
Sbjct: 7 IAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQ 66
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V +A F+AG ++S+ F A G V+D S A P V+PEVN E ++ +
Sbjct: 67 VQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALP-SAQAPNVVPEVNAERLASLA---- 121
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
L+++P+ S + +A PL + R+ V+ A S G + EL QT E+L
Sbjct: 122 APFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNA 181
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVM 281
+P + F +Q AFNL + G+ E ++V E R++ +++++ TCI+VPV
Sbjct: 182 RPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVF 241
Query: 282 RAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLE-VSNKDDVAVGRIR 340
+ SV LQ P+D L+ APG+ +++ +PTP+ +D V VGR+R
Sbjct: 242 FGDSLSVALQSAAPVDLAAVNAALEAAPGIELVEA---GDYPTPVGDAVGQDVVYVGRVR 298
Query: 341 RDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
V L++++ D VRKGAALNAVQ+AE+L+
Sbjct: 299 AGVDDPCQ--LNLWLTSDNVRKGAALNAVQVAELLI 332
|
Length = 336 |
| >gnl|CDD|181205 PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 8e-60
Identities = 112/343 (32%), Positives = 185/343 (53%), Gaps = 24/343 (6%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFD 100
++A++G TGAVG+ L +L++R FP + LAS+ SAG+ L F K+ TV++ E +
Sbjct: 6 NIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWS 65
Query: 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGM 160
+A F AG S + A G +V+D+S F + +VPLV+PEVNP ++ +
Sbjct: 66 QAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR--- 122
Query: 161 GKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
+IA + T L A PL +A ++R+ V+ +AS G AA++ L Q+ ++L
Sbjct: 123 -NRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLN 181
Query: 221 GKPPTCKIFSQQYAFNLFSHNAPVL--ENGYNEEEMKMVKETRKIWNDKDVRVTATCIRV 278
G P F +Q AFN+ P+L G EE ++V + RKI D+ + ++ +C++
Sbjct: 182 GIPIEEGFFGRQLAFNML----PLLPDSEGSVREERRLVDQVRKILQDEGLPISVSCVQS 237
Query: 279 PVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVG 337
PV HA+ V+ + +PL + ARD L+ +V+ ++ N +PT + + S +++G
Sbjct: 238 PVFYGHAQMVHFEALRPLAAEEARDALEQGEDIVLSEE---NDYPTQVGDASGNPHLSIG 294
Query: 338 RIRRDVSQDGNHG----LDIFVCGDQVRKGAALNAVQIAEMLL 376
+R D +G L + D VR G AL AV+ AE L+
Sbjct: 295 CVRND------YGMPEQLQFWSVADNVRFGGALMAVKTAEKLV 331
|
Length = 336 |
| >gnl|CDD|236329 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-56
Identities = 116/389 (29%), Positives = 175/389 (44%), Gaps = 106/389 (27%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQL--------------SFQD 86
V ++G TG VGQ F+ +L++ P+ + L AS+RSAGK D
Sbjct: 6 VGILGATGMVGQRFVQLLAN--HPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVAD 63
Query: 87 KAYTVEELTEDSFDGVDIALFSA-----GGSISKKFGPIAVEKGSIVVDNSSAFRMVENV 141
V ++ D VDI +FSA G + ++F + G V N+SA RM +V
Sbjct: 64 --MEVVSTDPEAVDDVDI-VFSALPSDVAGEVEEEF----AKAGKPVFSNASAHRMDPDV 116
Query: 142 PLVIPEVNPEAMSGIKV----GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197
PLVIPEVNPE + I+V G ++ NPNCSTI ++A PL + R+ V+T
Sbjct: 117 PLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLALKPL-MDFGIERVHVTTM 175
Query: 198 QAASGAG---AAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEM 254
QA SGAG +M+ ++ N+ + EEE
Sbjct: 176 QAISGAGYPGVPSMDIVD-----------------------NVIPY-------IGGEEE- 204
Query: 255 KMVKETRKIW--------NDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILK 306
K+ KET KI D ++ATC RVPV+ H E+V ++F++ +D + R+ L+
Sbjct: 205 KIEKETLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALE 264
Query: 307 NAPGVVVIDDRASNHFPT----PLEVSNKDD---------------VAVGRIRRDVSQDG 347
+ G+ P+ P+ + + D V+VGR+R +DG
Sbjct: 265 SFKGLPQELG-----LPSAPKKPIILFEEPDRPQPRLDRDAGDGMAVSVGRLR----EDG 315
Query: 348 NHGLDIFVC-GDQVRKGAALNAVQIAEML 375
+ FV G +GAA +V AE+L
Sbjct: 316 IFDIK-FVVLGHNTVRGAAGASVLNAELL 343
|
Length = 349 |
| >gnl|CDD|233220 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-44
Identities = 113/380 (29%), Positives = 169/380 (44%), Gaps = 87/380 (22%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSI-KMLASKRSAGKQL--------------SFQD 86
VAV+G TG VGQ+F+ +L+ PY + K++AS RSAGK+ +D
Sbjct: 3 VAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRD 60
Query: 87 KAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIP 146
+ E + D VDI + ++++ P E G V N+S RM +VPL+IP
Sbjct: 61 --LPIVEPEPIAEDDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIP 118
Query: 147 EVNPEAMSGIKV---GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203
EVN + + +KV KG ++ NPNC+T +A PL + ++ V+T QA SGA
Sbjct: 119 EVNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGA 178
Query: 204 GAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
G + +++ N+ H EE K+ +ETRKI
Sbjct: 179 GYPGVPSMDILD--------------------NIIPH--------IGGEEEKIERETRKI 210
Query: 264 W----NDK----DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN-------- 307
N K V+AT RVPV+ H ESV+++F+K D + R+ LK+
Sbjct: 211 LGKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKL 270
Query: 308 ----APGVVVI----DDRASNHFPTP-LEVSNKDD--VAVGRIRRDVSQDGNHGLDIFVC 356
AP +I +DR P P L+ V VGR+R + L V
Sbjct: 271 GLPSAPEKPIIVRDEEDR-----PQPRLDRDAGGGMAVTVGRLREE-----GGSLKYVVL 320
Query: 357 GDQVRKGAALNAVQIAEMLL 376
G + +GAA + AE+
Sbjct: 321 GHNLVRGAAGATLLNAELAY 340
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan [Amino acid biosynthesis, Aspartate family]. Length = 341 |
| >gnl|CDD|201603 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 6e-38
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 7/121 (5%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA------YTVEELT 95
VA+VG TG VGQE L +L P + ++AS RSAGK+++F +E++
Sbjct: 2 VAIVGATGYVGQELLRLL-AEHPPLELVALVASSRSAGKKVAFAYPILEGGKDLLLEDVD 60
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ VDI + +SK+ P +E G++V+D SSAFRM ++VP V+PEVN EA+
Sbjct: 61 PEDLKDVDIVFLALPAGVSKELAPKLLEAGAVVIDLSSAFRMDDDVPYVLPEVNREAIKK 120
Query: 156 I 156
Sbjct: 121 A 121
|
This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase. Length = 121 |
| >gnl|CDD|217222 pfam02774, Semialdhyde_dhC, Semialdehyde dehydrogenase, dimerisation domain | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-35
Identities = 67/186 (36%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 182 PLH-RRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240
PL + R++V TYQA SGAG A +F A NL +
Sbjct: 3 PLRDALGGLERVIVDTYQAVSGAGKKAKPG-----------------VFGAPIADNLIPY 45
Query: 241 NAPVLENGYNE--EEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFE-KPLD 297
NG E EE+KMV ET+KI V+ATC+RVPV R H+E+V ++ + KP+D
Sbjct: 46 IDGEEHNGTPETREELKMVNETKKILGFTPK-VSATCVRVPVFRGHSETVTVKLKLKPID 104
Query: 298 EDTARDILKNAPGVVVIDDRASNHFPTPLEVSNK-DDVAVGRIRRDVSQDGNHGLDIFVC 356
+ + APGV V+ R +PTP V + V VGR+R+D DG+ GL +
Sbjct: 105 VEEVYEAFYAAPGVFVV-VRPEEDYPTPRAVRGGTNFVYVGRVRKDP--DGDRGLKLVSV 161
Query: 357 GDQVRK 362
D +RK
Sbjct: 162 IDNLRK 167
|
This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase. Length = 167 |
| >gnl|CDD|214863 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-32
Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 11/125 (8%)
Query: 41 SVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEELTE 96
VA+VG TG VGQE L +L++ DF ++ AS RSAGK++S K V EL
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPDFELTAL--AASSRSAGKKVSEAGPHLKGEVVLELDP 58
Query: 97 DSFD--GVDIALFSAGGSISK---KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
F+ VDI + +SK P A G++V+D SSAFRM ++VP +PEVNPE
Sbjct: 59 PDFEELAVDIVFLALPHGVSKESAPLLPRAAAAGAVVIDLSSAFRMDDDVPYGLPEVNPE 118
Query: 152 AMSGI 156
A+
Sbjct: 119 AIKKA 123
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. Length = 123 |
| >gnl|CDD|130806 TIGR01745, asd_gamma, aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 95/358 (26%), Positives = 152/358 (42%), Gaps = 39/358 (10%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSF 99
V +VG G VG + + +RDF ++ + SF T+++ + D+
Sbjct: 3 VGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDAL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+DI + GG + + P E G +D +S+ RM ++ +++ VN + I
Sbjct: 63 KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDV---IT 119
Query: 158 VGMGKGA-LIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQT- 215
G+ G NC+ + LM+ L V + V+TYQAASG GA M EL Q
Sbjct: 120 DGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMG 179
Query: 216 ---REVLE--GKPPTC------KIFSQQYAFNLFSHNAPV-------------LENGYNE 251
V + P + K+ + L N V L+NG +
Sbjct: 180 HLYGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSR 239
Query: 252 EEMKMVKETRKIWNDKDV-RVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA-P 309
EE K ET KI V C+R+ +R H+++ ++ +K + +T +I++ P
Sbjct: 240 EEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIRAHNP 299
Query: 310 GV-VVIDDRASNHFP-TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAA 365
V VV +DR TP V+ + VGR+R+ G L F GDQ+ GAA
Sbjct: 300 WVKVVPNDREITMRELTPAAVTGTLTIPVGRLRK--LNMGPEYLSAFTVGDQLLWGAA 355
|
[Amino acid biosynthesis, Aspartate family]. Length = 366 |
| >gnl|CDD|235839 PRK06598, PRK06598, aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 110/376 (29%), Positives = 156/376 (41%), Gaps = 74/376 (19%)
Query: 42 VAVVGVTGAVGQEFLSVLSDR-----DF----PY---RSIKMLASKRSAGKQLSFQDKAY 89
V VG G VG SVL R DF P S A+ GK+ + QD A+
Sbjct: 4 VGFVGWRGMVG----SVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQD-AF 58
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPE 147
++ L + +DI + GG + + P G +D +S RM ++ +++
Sbjct: 59 DIDALKK-----LDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDP 113
Query: 148 VNPEAMSGIKVGMGKGALIAN---PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAG 204
VN I + G + NC+ + LMA L + V + V TYQAASGAG
Sbjct: 114 VN---RDVIDDALANG--VKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAG 168
Query: 205 AAAMEEL-------------ELQT---------REVLE----GKPPTCKIFSQQYAFNLF 238
A M EL EL R+V E G PT F A +L
Sbjct: 169 ARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPT-DNFGVPLAGSLI 227
Query: 239 SHNAP----VLENGYNEEEMKMVKETRKIWN--DKDVRVTATCIRVPVMRAHAESVNLQF 292
P L NG + EE K ET KI + V C+RV MR H++++ ++
Sbjct: 228 ----PWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKL 283
Query: 293 EKPLDEDTARDILKNA-PGVVVI-DDR-ASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNH 349
+K + +IL P V V+ +DR A+ TP V+ + VGR+R+ G
Sbjct: 284 KKDVPLAEIEEILAAHNPWVKVVPNDREATMRELTPAAVTGTLTIPVGRLRK--LNMGPE 341
Query: 350 GLDIFVCGDQVRKGAA 365
L F GDQ+ GAA
Sbjct: 342 YLSAFTVGDQLLWGAA 357
|
Length = 369 |
| >gnl|CDD|223081 COG0002, ArgC, Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 76/365 (20%), Positives = 127/365 (34%), Gaps = 71/365 (19%)
Query: 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQDKAYT 90
V +VG +G G E L +L+ P + +++S+ AGK +S D +
Sbjct: 2 MIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQ 59
Query: 91 VEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE--------NVP 142
+ + D D+ + +S + P +E G V+D S+ FR+ +
Sbjct: 60 TIDPEKIELDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFT 119
Query: 143 LVIPEVNPEAMSGI------KVGMGKGA-LIANPNCSTIICLMAATPLHRRAKVTRM-VV 194
PE+ +A+ G+ K+ +GA LIANP C ++A PL +A +
Sbjct: 120 HAGPELLEDAVYGLPELHREKI---RGAKLIANPGCYPTAAILALAPL-VKAGLLDPDSP 175
Query: 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEM 254
A SG A G+ + N F L Y
Sbjct: 176 PIVDAKSGVSGA--------------GRKAS--------VKNHFPEVNDSL-RPYGLTGH 212
Query: 255 KMVKETR---KIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDIL----KN 307
+ E + V V T P +R ++ L+ + + +
Sbjct: 213 RHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAG 272
Query: 308 APGVVVIDDRASNHFPTPLEV--SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAA 365
P V V+ + +P V SN D+ V + + + D + KGAA
Sbjct: 273 EPFVRVVPEGG---YPDTKAVAGSNFCDIGFA-----VDERTGR-VVVVSAIDNLVKGAA 323
Query: 366 LNAVQ 370
AVQ
Sbjct: 324 GQAVQ 328
|
Length = 349 |
| >gnl|CDD|234761 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 2e-09
Identities = 52/198 (26%), Positives = 78/198 (39%), Gaps = 44/198 (22%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS------FQDKAYTVEEL 94
V +VG +G G E L +L + P I + S+ SAGK LS +E L
Sbjct: 4 KVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPL 61
Query: 95 TEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMV-------------ENV 141
+ G D+ + +S P +E G V+D S+ FR+
Sbjct: 62 DPEILAGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAP 121
Query: 142 PLV------IPEVNPEAMSGIKVGMGKGA-LIANPNC---STIICLMAATPL--HRRAKV 189
L+ +PE+N E + KGA LIANP C ++++ L PL
Sbjct: 122 ELLKEAVYGLPELNREEI--------KGARLIANPGCYPTASLLALA---PLLKAGLIDP 170
Query: 190 TRMVVSTYQAASGAGAAA 207
+++ SGAG A
Sbjct: 171 DSIIIDAKSGVSGAGRKA 188
|
Length = 343 |
| >gnl|CDD|233597 TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 85/366 (23%), Positives = 137/366 (37%), Gaps = 80/366 (21%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSF---QDKAYTVEELTED 97
VA+VG +G G E L +L + P I L +S+ SAGK +S + L
Sbjct: 3 VAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPI 60
Query: 98 SFD----GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRM---------------- 137
+ D+ + +S + P + G V+D S+ FR+
Sbjct: 61 DVEEILEDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPELYEKWYGFEHAG 120
Query: 138 ---VENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
++ +PE++ E + KGA LIANP C L+A PL T
Sbjct: 121 PELLQKAVYGLPELHREEI--------KGARLIANPGCYPTATLLALAPLLKEGLIDPTS 172
Query: 192 MVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGYN 250
++V SGAG A E EV E P + + H + P
Sbjct: 173 IIVDAKSGVSGAGRKASEANHFP--EVNENLRP----------YKVTGHRHTP------- 213
Query: 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDIL----K 306
++ +E + V+V+ T VP+ R ++ + + L E+ R +
Sbjct: 214 ----EIEQELGR-LAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRALYEEFYA 268
Query: 307 NAPGVVVIDDRASNHFPTPLEV--SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGA 364
+ P V V+ + +P+ V SN D+ V + + + D + KGA
Sbjct: 269 DEPFVRVLPEGG---YPSTKAVIGSNFCDIGF-----AVDERTGR-VVVVSAIDNLVKGA 319
Query: 365 ALNAVQ 370
A AVQ
Sbjct: 320 AGQAVQ 325
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons [Amino acid biosynthesis, Glutamate family]. Length = 346 |
| >gnl|CDD|235883 PRK06901, PRK06901, aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 21/219 (9%)
Query: 82 LSFQDKAYTVEELTEDSFDGVDIA-LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN 140
+ F +KA VE++ + + D +F AG + A E G IV+D + N
Sbjct: 46 IRFNNKA--VEQIAPEEVEWADFNYVFFAGKMAQAEHLAQAAEAGCIVIDLYGICAALAN 103
Query: 141 VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAA 200
VP+V+P VN E ++ ++ + +++ P+ +A P + ++++ V++ A
Sbjct: 104 VPVVVPSVNDEQLAELR----QRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSLLPA 159
Query: 201 SGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET 260
S A +++L QT +L G P + Q+ AF++F NA LE +
Sbjct: 160 SYTDAETVKKLAGQTARLLNGIPLDEE--EQRLAFDVFPANAQNLEL-----------QL 206
Query: 261 RKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDED 299
+KI+ + VT I+VPV A+ V E LD +
Sbjct: 207 QKIFPQLE-NVTFHSIQVPVFYGLAQMVTALSEYELDIE 244
|
Length = 322 |
| >gnl|CDD|215522 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 52/236 (22%), Positives = 84/236 (35%), Gaps = 41/236 (17%)
Query: 2 ATFSSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSD 61
S + + + E + V+G +G G E +L++
Sbjct: 3 FADSVGSKGLAS--RASVTSSPQSVVSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLAN 60
Query: 62 RDFPYRSIKMLASKRSAGKQ-------LSFQDKAYTVEELTEDSFDGVDIALF-----SA 109
P I ++ + R AG+ L QD V D F VD A+F
Sbjct: 61 H--PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDAD-FSDVD-AVFCCLPHGT 116
Query: 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGI----K 157
I K A+ K +VD S+ FR+ + P PE+ EA+ G+ +
Sbjct: 117 TQEIIK-----ALPKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQR 171
Query: 158 VGMGKGALIANPNC--STIICLMAATPLHRRA--KVTRMVVSTYQAASGAGAAAME 209
+ L+ANP C + I + PL + + +++ SGAG A E
Sbjct: 172 EEIKSARLVANPGCYPTGIQLPL--VPLVKAGLIEPDNIIIDAKSGVSGAGRGAKE 225
|
Length = 381 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 376 | |||
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 100.0 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 100.0 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 100.0 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 100.0 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 100.0 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 100.0 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 100.0 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 100.0 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 100.0 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 100.0 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 100.0 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 100.0 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 100.0 | |
| KOG4354 | 340 | consensus N-acetyl-gamma-glutamyl-phosphate reduct | 100.0 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 100.0 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 100.0 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 100.0 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 100.0 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 100.0 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 100.0 | |
| TIGR01534 | 327 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, | 100.0 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 100.0 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 100.0 | |
| PLN02237 | 442 | glyceraldehyde-3-phosphate dehydrogenase B | 100.0 | |
| PF02774 | 184 | Semialdhyde_dhC: Semialdehyde dehydrogenase, dimer | 100.0 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 100.0 | |
| PTZ00353 | 342 | glycosomal glyceraldehyde-3-phosphate dehydrogenas | 100.0 | |
| PRK08289 | 477 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 100.0 | |
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 99.97 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 99.96 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 99.94 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 99.9 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 99.87 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 99.74 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 99.63 | |
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 99.44 | |
| KOG0657 | 285 | consensus Glyceraldehyde 3-phosphate dehydrogenase | 99.28 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 99.24 | |
| PF02800 | 157 | Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, | 99.13 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 98.88 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.4 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 98.24 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.23 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.1 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.06 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.97 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.97 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 97.95 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 97.86 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.77 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.72 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.7 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.62 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 97.6 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.59 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.49 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 97.42 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.41 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.36 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.35 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.35 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.34 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 97.29 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.28 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.21 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.18 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.15 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.14 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.13 | |
| PLN02256 | 304 | arogenate dehydrogenase | 97.12 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 97.11 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 97.11 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 97.11 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.1 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 97.05 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.05 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.05 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 97.05 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.04 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.03 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 97.02 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 97.01 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 96.91 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.88 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.84 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.78 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.77 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.74 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 96.74 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 96.71 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.69 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.67 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.67 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.63 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 96.59 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.53 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 96.51 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 96.5 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.47 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 96.47 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 96.46 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.45 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 96.45 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 96.41 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 96.41 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.41 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 96.37 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.36 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 96.34 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.34 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 96.28 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.23 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.22 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.21 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.21 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.19 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.14 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.09 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 96.07 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 96.07 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.0 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 95.98 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 95.98 | |
| KOG4777 | 361 | consensus Aspartate-semialdehyde dehydrogenase [Am | 95.96 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 95.94 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 95.93 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 95.93 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 95.93 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 95.92 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.89 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 95.88 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 95.87 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.86 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.84 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.83 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.83 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.77 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 95.75 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.72 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 95.7 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.69 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 95.65 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 95.63 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.58 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 95.54 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.5 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.47 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 95.46 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 95.42 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 95.38 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.32 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.29 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 95.25 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 95.18 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.14 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.14 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.09 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 95.06 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.06 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.05 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 95.03 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.94 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 94.86 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 94.81 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 94.79 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 94.72 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.7 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.64 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 94.64 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 94.62 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 94.61 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 94.6 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 94.57 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.57 | |
| PLN02602 | 350 | lactate dehydrogenase | 94.49 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.48 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 94.44 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 94.43 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.43 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.36 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.33 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 94.28 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 94.2 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 94.17 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 94.14 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 94.13 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 94.13 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 94.11 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 94.08 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 94.08 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.07 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 94.05 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 94.05 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 93.96 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 93.94 | |
| PLN02700 | 377 | homoserine dehydrogenase family protein | 93.92 | |
| PLN02696 | 454 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 93.87 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 93.87 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 93.85 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.83 | |
| PLN00106 | 323 | malate dehydrogenase | 93.76 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 93.76 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 93.76 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.73 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.71 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 93.7 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 93.68 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.67 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 93.62 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.58 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 93.52 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.51 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 93.5 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 93.5 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 93.48 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 93.48 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 93.45 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 93.4 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 93.39 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 93.39 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 93.37 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.32 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 93.31 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.28 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 93.26 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 93.26 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 93.24 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 93.24 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 93.21 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 93.21 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.2 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 93.15 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 93.1 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.04 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 92.96 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 92.92 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 92.87 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.83 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 92.72 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 92.72 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 92.7 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 92.66 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 92.66 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 92.65 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 92.59 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 92.59 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 92.53 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.45 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 92.44 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 92.42 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 92.41 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 92.41 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 92.37 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.35 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 92.34 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 92.33 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 92.31 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 92.22 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.14 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 92.12 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.1 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 92.05 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 92.04 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 92.02 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 91.96 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.95 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 91.86 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 91.83 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.81 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 91.76 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 91.69 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 91.66 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 91.62 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 91.5 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 91.34 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 91.33 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 91.28 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 91.24 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.16 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 91.14 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 91.12 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 91.11 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 91.08 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 91.05 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 90.98 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.97 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 90.9 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 90.82 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.82 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 90.8 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 90.76 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 90.71 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 90.7 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.69 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 90.69 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 90.58 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 90.56 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 90.55 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 90.44 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 90.44 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 90.42 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.37 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 90.33 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 90.32 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 90.28 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 90.26 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.21 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 90.19 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.18 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 90.17 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 90.03 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 89.95 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 89.93 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.92 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.89 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 89.83 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.81 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.8 | |
| TIGR00243 | 389 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 89.77 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 89.74 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 89.73 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.45 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 89.44 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 89.42 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 89.42 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.21 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 89.2 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 89.12 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 89.12 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 89.07 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 88.97 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 88.96 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.95 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.92 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 88.86 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 88.72 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 88.7 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 88.63 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 88.63 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 88.61 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 88.56 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 88.54 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 88.53 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 88.44 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 88.44 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 88.42 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 88.3 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 88.27 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.25 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.21 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.15 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.0 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 87.98 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 87.95 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 87.85 | |
| PLN02928 | 347 | oxidoreductase family protein | 87.8 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 87.7 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 87.65 | |
| PRK08223 | 287 | hypothetical protein; Validated | 87.59 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 87.53 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.51 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 87.49 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 87.43 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.4 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 87.38 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.3 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 87.27 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 86.89 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 86.71 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 86.67 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.64 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 86.48 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 86.45 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 86.39 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.37 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 86.33 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 86.13 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 86.13 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 86.11 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 86.09 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 85.81 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 85.79 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 85.67 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 85.53 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.52 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 85.49 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 85.39 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 85.39 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.3 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 85.3 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 85.28 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 85.28 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.27 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.24 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 85.15 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 85.09 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.07 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.07 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 85.05 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 84.86 | |
| PRK07411 | 390 | hypothetical protein; Validated | 84.85 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 84.76 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.73 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.62 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 84.53 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 84.52 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 84.52 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 84.45 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 84.39 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 84.36 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 84.28 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 84.25 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 84.15 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 84.15 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 84.01 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 84.0 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 84.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 84.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 83.97 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 83.94 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 83.89 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 83.77 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 83.74 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 83.67 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 83.54 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 83.46 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 83.21 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 83.1 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 83.06 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.02 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 82.82 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 82.75 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 82.69 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 82.61 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 82.58 | |
| PRK12464 | 383 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 82.47 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 82.47 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 82.41 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 82.37 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 82.31 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 82.26 | |
| COG0743 | 385 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 82.21 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 82.16 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 81.94 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 81.83 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 81.58 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 81.45 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 81.4 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 81.39 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 81.36 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 81.35 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 81.24 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 81.19 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 81.14 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 81.12 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 81.09 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 81.06 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 81.0 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 80.99 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 80.97 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 80.92 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 80.83 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 80.46 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 80.33 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 80.18 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 80.18 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 80.17 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 80.12 |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-84 Score=635.27 Aligned_cols=344 Identities=85% Similarity=1.270 Sum_probs=314.1
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
|.++.+++||+|+|||||+|++|+|+|.+++||.+++..++|.+++|+.+.+.+.++.+.+++++.+.++|+||+|+|++
T Consensus 1 ~~~~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~ 80 (344)
T PLN02383 1 MALTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS 80 (344)
T ss_pred CCccCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH
Confidence 34455679999999999999999999999888999999999999999999887667777777766778999999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEE
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRM 192 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v 192 (376)
.++++++++.++|++|||+|++||+++++||++||||++.++..+.+..+.++|||||||+|+++++|+||+++++|++|
T Consensus 81 ~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPgC~~t~~~laL~PL~~~~~i~~v 160 (344)
T PLN02383 81 ISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRM 160 (344)
T ss_pred HHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCCcHHHHHHHHHHHHHHcCCeeEE
Confidence 99999999999999999999999999999999999999999853211112459999999999999999999999999999
Q ss_pred EEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEE
Q 017153 193 VVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVT 272 (376)
Q Consensus 193 ~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~ 272 (376)
+|++|||+||||+++++++++|+..++++++..+++++++++||++||+|.+.++|++++|.++++|++|+++...++|+
T Consensus 161 vv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~~v~ 240 (344)
T PLN02383 161 VVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVT 240 (344)
T ss_pred EEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCChHHHHHHHHHHHHhCCCCCeEE
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999977778899
Q ss_pred EEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCCCCeEE
Q 017153 273 ATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLD 352 (376)
Q Consensus 273 ~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~ 352 (376)
||||||||+|||+.++|++++++++.++++++|+++|||++++...++.+|+|+++.|+|+|+|||+|+|...++.++++
T Consensus 241 ~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~p~v~v~~~~~~~~~p~p~~v~g~~~v~Vgr~r~~~~~~~~~~l~ 320 (344)
T PLN02383 241 ATCIRVPVMRAHAESINLQFEKPLDEATAREILASAPGVKIIDDRANNRFPTPLDASNKDDVAVGRIRQDISQDGNKGLD 320 (344)
T ss_pred EEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcCCCCEEEeCCCcCCCCccceeCCCceEEEEEEEccCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999976444468999999999999999999875323226899
Q ss_pred EEEEechHHhhHHHHHHHHHHhcC
Q 017153 353 IFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 353 ~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+|+++|||+||||||||||||+|+
T Consensus 321 ~~~~~DNL~kGAAg~AVq~an~~~ 344 (344)
T PLN02383 321 IFVCGDQIRKGAALNAVQIAELLL 344 (344)
T ss_pred EEEEEhHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999985
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-82 Score=616.03 Aligned_cols=329 Identities=41% Similarity=0.697 Sum_probs=308.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeE---EEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS---IKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~---l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
+.+||||+|||||+|++|+++|.+| |+++ +..++|.+++|+.+.+.++++.+++++++.|.++|+||+|+|++++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h--~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKE--TKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHC--CCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHH
Confidence 4589999999999999999999976 6666 8889999999999988777888888887778899999999999999
Q ss_pred hhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 115 KKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
+++++++.++|++|||+|++||+++++||++||||+++++. ..++|||||||+|+++++|+||+++++|++++|
T Consensus 82 ~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~------~~~iIanPnC~tt~~~laL~PL~~~~~i~~v~V 155 (347)
T PRK06728 82 RQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE------HKGIIAVPNCSALQMVTALQPIRKVFGLERIIV 155 (347)
T ss_pred HHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhc------cCCEEECCCCHHHHHHHHHHHHHHcCCccEEEE
Confidence 99999999999999999999999999999999999999983 236999999999999999999999999999999
Q ss_pred EEEccccccChHhHHHHHHHhhhhhcCCCCCccccc-------ccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCC
Q 017153 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS-------QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDK 267 (376)
Q Consensus 195 ~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~-------~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~ 267 (376)
+||||+||||++++++|.+|+..+++|++.++..|+ .+++||+|||++.+.++||++||+|++.|++|||+.+
T Consensus 156 ~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~ 235 (347)
T PRK06728 156 STYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDP 235 (347)
T ss_pred EEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccccCCccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999888888999 9999999999999999999999999999999999888
Q ss_pred CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCC
Q 017153 268 DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDG 347 (376)
Q Consensus 268 ~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~ 347 (376)
++.|++||+||||++||+.+++++|+++++.++++++|+++|+|.+++++..+.||+|+++.|++.|+|||+|+|.. .
T Consensus 236 ~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~gi~~~d~p~~~~~ptP~~~~g~~~v~VGRiR~d~~--~ 313 (347)
T PRK06728 236 NLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPGVILQDNPSEQLYPMPLYAEGKIDTFVGRIRKDPD--T 313 (347)
T ss_pred CCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCCCCEEeCCCcccCCcCccccCCCCeEEEeCccccCC--C
Confidence 89999999999999999999999999999999999999999999999775555699999999999999999998754 3
Q ss_pred CCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 348 NHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 348 ~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
.+.+++|++.|||+||||+||||++|+|+
T Consensus 314 ~~~l~~w~~~DNlr~GAA~nav~iaE~l~ 342 (347)
T PRK06728 314 PNGFHLWIVSDNLLKGAAWNSVQIAETMV 342 (347)
T ss_pred CCeEEEEEEechHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999873
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-81 Score=608.32 Aligned_cols=327 Identities=33% Similarity=0.549 Sum_probs=302.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+++||||+|||||+|++|+|+|.+|+||.+++..++|++++|+.+.+.+.++.+++.+..+|.++|+||+|+|+++++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~ 82 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY 82 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence 47999999999999999999999988899999999999999999998767788876666667899999999999999999
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEE
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~ 197 (376)
++++.++|++|||+|++||+++++||++||+|++.++.++ +.++|||||||+|+++++|+||++.++|++++|++|
T Consensus 83 ~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~----~~~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~ 158 (336)
T PRK08040 83 AEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR----NRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNL 158 (336)
T ss_pred HHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc----cCCEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 9999999999999999999999999999999996555331 578999999999999999999999999999999999
Q ss_pred ccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEE
Q 017153 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIR 277 (376)
Q Consensus 198 ~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~ 277 (376)
||+|||||+++++|++||.++++|++.++..|+.++++|++|++++ |+|++.+|+++..|++++|+..++.|+|||||
T Consensus 159 qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~--~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~ 236 (336)
T PRK08040 159 LSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPD--SEGSVREERRLVDQVRKILQDEGLPISVSCVQ 236 (336)
T ss_pred ccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCC--cCCcchHhhhhHHHHHHHhCCCCCeEEEEeEE
Confidence 9999999999999999999999998888889999999999999997 78999999998999999997667889999999
Q ss_pred ecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcc-ccccCCCceEEEEEEeccCCCCCCeEEEEEE
Q 017153 278 VPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVC 356 (376)
Q Consensus 278 VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~ 356 (376)
|||+|||++++|++++++++.++++++|+++|||+|+++ +.+|+| +++.|+|+|+|||++.+.+ .++++++|++
T Consensus 237 vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~p~v~v~~~---~~~P~~~~~v~g~n~~~Vgr~~~~~~--~~~~l~~~~~ 311 (336)
T PRK08040 237 SPVFYGHAQMVHFEALRPLAAEEARDALEQGEDIVLSEE---NDYPTQVGDASGNPHLSIGCVRNDYG--MPEQLQFWSV 311 (336)
T ss_pred ecchhcEEEEEEEEECCCCCHHHHHHHHhcCCCEEEECC---CCCCCchhHcCCCceEEEEEEEccCC--CCCEEEEEEE
Confidence 999999999999999999999999999999999999965 348999 7999999999999996532 2489999999
Q ss_pred echHHhhHHHHHHHHHHhc
Q 017153 357 GDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 357 ~DNL~kGAAgqAvq~~nl~ 375 (376)
+|||+|||||||||++|++
T Consensus 312 ~DNL~KGAAg~AVQiae~l 330 (336)
T PRK08040 312 ADNVRFGGALMAVKTAEKL 330 (336)
T ss_pred ehhHHHHHHHHHHHHHHHH
Confidence 9999999999999999986
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-80 Score=602.53 Aligned_cols=328 Identities=35% Similarity=0.583 Sum_probs=303.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
++||+|+|||||+|++|+|+|.+++||.++++.+.|++++|+.+.+.+.++.+.+.++++|.++|+||+|+|++++.+++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~s~~~v 83 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAVSRSFA 83 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHHHHHHH
Confidence 48999999999999999999998778999999999999999998876667777776666678999999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~ 198 (376)
+++.++|++|||+|++||++ ++||++||||+++++.++ +.++|||||||+|+++++|+||++.+++++++|++||
T Consensus 84 ~~~~~~G~~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~----~~~iIAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~ 158 (336)
T PRK05671 84 EKARAAGCSVIDLSGALPSA-QAPNVVPEVNAERLASLA----APFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACL 158 (336)
T ss_pred HHHHHCCCeEEECchhhcCC-CCCEEecccCHHHHcccc----CCCEEECCCcHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 99999999999999999996 789999999999998431 3789999999999999999999988889999999999
Q ss_pred cccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEe
Q 017153 199 AASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRV 278 (376)
Q Consensus 199 gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~V 278 (376)
|+||||++++++|+.|+.+++++++.++..|+++++||++||++++.++|+++||+|.+.|++|+|+..++.|+||||||
T Consensus 159 ~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~v 238 (336)
T PRK05671 159 AVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQV 238 (336)
T ss_pred cCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEe
Confidence 99999999999999999888888888888999999999999999999999999999999999999987778899999999
Q ss_pred cccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcc-ccccCCCceEEEEEEeccCCCCCCeEEEEEEe
Q 017153 279 PVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCG 357 (376)
Q Consensus 279 Pv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~ 357 (376)
||+|||+.++|++++++++.++++++|+++|||+++++ +.+|+| +++.|+|+|+|||+|.|.. .++++++|+++
T Consensus 239 Pv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~~v~v~~~---~~~p~~~~~v~g~~~~~vg~~~~~~~--~~~~l~~~~~~ 313 (336)
T PRK05671 239 PVFFGDSLSVALQSAAPVDLAAVNAALEAAPGIELVEA---GDYPTPVGDAVGQDVVYVGRVRAGVD--DPCQLNLWLTS 313 (336)
T ss_pred chhhhEeeEEEEEECCCCCHHHHHHHHhCCCCeEEeCC---CCCCCChHHcCCCCeEEEEEEEecCC--CCCEEEEEEEe
Confidence 99999999999999999999999999999999999965 348999 6999999999999996532 34899999999
Q ss_pred chHHhhHHHHHHHHHHhcC
Q 017153 358 DQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 358 DNL~kGAAgqAvq~~nl~~ 376 (376)
|||+||||+|||||||+++
T Consensus 314 DNL~kGAA~~AVq~~~~l~ 332 (336)
T PRK05671 314 DNVRKGAALNAVQVAELLI 332 (336)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999873
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-77 Score=587.79 Aligned_cols=331 Identities=56% Similarity=0.894 Sum_probs=299.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
+||+|+|||||+|++|+|+|.+|+||.+++++++++++.|+.+.+.+.++.+.+.+...|.++|+||+|+|++.++++++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~ 81 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYAP 81 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHHH
Confidence 79999999999999999999998889999999999889999887765566666655556789999999999999999999
Q ss_pred HHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEcc
Q 017153 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQA 199 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~g 199 (376)
++.++|++|||+|++||+++++||++||+|++.++... +.++|||||||+|+++++|+||+++++|+++++||+||
T Consensus 82 ~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~----~~~iVanp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~ 157 (334)
T PRK14874 82 KAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHR----KKGIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQA 157 (334)
T ss_pred HHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhh----cCCeEECccHHHHHHHHHHHHHHHhcCceEEEEEEEec
Confidence 99999999999999999998899999999999997310 13799999999999999999999999999999999999
Q ss_pred ccccChHhHHHHHHHhhhhhc--CCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEE
Q 017153 200 ASGAGAAAMEELELQTREVLE--GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIR 277 (376)
Q Consensus 200 vSGaGr~~~~~l~~q~~~~~~--~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~ 277 (376)
+||||++++++++.|+.+.++ +++.++.+++++++||++||++++.++|.+.||+|+++|+.++++.+.++|+|||||
T Consensus 158 ~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~eE~ki~~el~~il~~~~~~v~~t~~r 237 (334)
T PRK14874 158 VSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDLKVSATCVR 237 (334)
T ss_pred hhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 999999999999888887775 334456778999999999999988899999999999999999996667789999999
Q ss_pred ecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEe
Q 017153 278 VPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCG 357 (376)
Q Consensus 278 VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~ 357 (376)
|||+|||+.++|++++++++.+|++++|+++|||++++....+.+|+|+++.|+|+|+||+++.|.. .++++++|+++
T Consensus 238 vPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~~~v~~~~~~~~~~~p~~~~v~g~~~~~vg~~~~~~~--~~~~l~~~~~~ 315 (334)
T PRK14874 238 VPVFTGHSESVNIEFEEPISVEEAREILAEAPGVVLVDDPENGGYPTPLEAVGKDATFVGRIRKDLT--VENGLHLWVVS 315 (334)
T ss_pred cceeccEEEEEEEEECCCCCHHHHHHHHHcCCCCEEEeCCcccCCCCceeeCCCcceEEeceEecCC--CCCEEEEEEEE
Confidence 9999999999999999999999999999999999999754334589999999999999999887642 25789999999
Q ss_pred chHHhhHHHHHHHHHHhcC
Q 017153 358 DQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 358 DNL~kGAAgqAvq~~nl~~ 376 (376)
|||+||||||||||||+|+
T Consensus 316 DNl~kGAA~~avq~~e~~~ 334 (334)
T PRK14874 316 DNLRKGAALNAVQIAELLI 334 (334)
T ss_pred chHHHHHHHHHHHHHHHhC
Confidence 9999999999999999874
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-78 Score=590.53 Aligned_cols=333 Identities=28% Similarity=0.377 Sum_probs=295.8
Q ss_pred CEEEEECcccHHHHHHHH-HHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-ccCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr-~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+||||+|||||+|++|++ +|.++++|..+++.++++++.|+...+.++...+.+.. ++.|.++|+||+|+|+++++++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~~ 81 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNEV 81 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHHH
Confidence 799999999999999998 55554555555888777666666666666555555533 5668899999999999999999
Q ss_pred HHHHHhCC--CeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEE
Q 017153 118 GPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195 (376)
Q Consensus 118 ~~~~~~~G--~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~ 195 (376)
++++.++| |.|||+|++||+++++||++||||+++++... ..+-++|+||||++|+++++|+||++.++|++++|+
T Consensus 82 ~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~--~~g~~iIanPnC~tt~~~laL~PL~~~~~i~~viVs 159 (369)
T PRK06598 82 YPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDAL--ANGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSVM 159 (369)
T ss_pred HHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhh--hcCCCEEEcCChHHHHHHHHHHHHHhcCCceEEEEE
Confidence 99999999 66999999999999999999999999998310 001158999999999999999999999999999999
Q ss_pred EEccccccChHhHHHHHHHhhhhhc-------------------------CCCCCcccccccccccccccCCCCcCCCch
Q 017153 196 TYQAASGAGAAAMEELELQTREVLE-------------------------GKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 196 t~~gvSGaGr~~~~~l~~q~~~~~~-------------------------~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
||||+||||++++++|.+|+..+++ +++.++..|+++++||+|||++.+.++||+
T Consensus 160 t~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~t 239 (369)
T PRK06598 160 TYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQS 239 (369)
T ss_pred eeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCch
Confidence 9999999999999999999998765 677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh-CCCcEEeeCCCC--CCCCcc
Q 017153 251 EEEMKMVKETRKIWND--KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN-APGVVVIDDRAS--NHFPTP 325 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~--~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~-~~~v~v~~~~~~--~~~p~~ 325 (376)
+||+|+++|++|||+. +.+.|++||+||||++||+.+++++|++++|.++++++|++ .|+|++++++.. ..||+|
T Consensus 240 ~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~i~~~L~~~~~gv~v~d~~~~~~~~yptP 319 (369)
T PRK06598 240 REEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAEIEEILAAHNPWVKVVPNDREATMRELTP 319 (369)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhcCCCEEEecCccccccCCCCc
Confidence 9999999999999986 78899999999999999999999999999999999999998 699999987543 459999
Q ss_pred ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 326 ~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
.++.|++.++|||+|+|.. .+++|++|+++||||||||.+|+|++|+++
T Consensus 320 ~~~~g~~~v~VGRiR~d~~--~~~~l~lw~v~DnlrkGAA~~~~~i~~~~~ 368 (369)
T PRK06598 320 AAVTGTLTIPVGRLRKLNM--GPEYLSAFTVGDQLLWGAAEPLRRMLRILL 368 (369)
T ss_pred cccCCCCcEEEecccccCC--CCCEEEEEEeechhhhhhHHHHHHHHHHHh
Confidence 9999999999999998765 348999999999999999999999999874
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-76 Score=579.85 Aligned_cols=330 Identities=54% Similarity=0.861 Sum_probs=301.6
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHHH
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~~ 120 (376)
||+|+|||||+|++|+++|.+++||.++++.+++.++.|+.+.+.+.++.+.+++.+.|.++|+||+|+|++.+++++++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a~~ 80 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFAPK 80 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHHHH
Confidence 68999999999999999999988899999999999999999987666677777766677899999999999999999999
Q ss_pred HHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccc
Q 017153 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAA 200 (376)
Q Consensus 121 ~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gv 200 (376)
++++|++|||+|++||+++++||++||+|++.++.. ....+|||||||+|+++++|+||+++++|++++|+|+||+
T Consensus 81 ~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~----~~~~iianp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~v 156 (339)
T TIGR01296 81 AAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEF----NTKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAV 156 (339)
T ss_pred HHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhC----ccCCEEECCCcHHHHHHHHHHHHHHhcCccEEEEEeeech
Confidence 999999999999999999889999999999999731 0134999999999999999999999999999999999999
Q ss_pred cccChHhHHHHHHHhhhhhcCCCCCc-------ccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEE
Q 017153 201 SGAGAAAMEELELQTREVLEGKPPTC-------KIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTA 273 (376)
Q Consensus 201 SGaGr~~~~~l~~q~~~~~~~~~~~~-------~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~ 273 (376)
||+|++++++|++|+..++++.+.++ .+++++.+||+|||++++.++|++.||.|++.|++++++..+++|+|
T Consensus 157 SgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~ 236 (339)
T TIGR01296 157 SGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSA 236 (339)
T ss_pred hhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEE
Confidence 99999999999999998887765555 78899999999999998889999999999999999999866788999
Q ss_pred EEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCCCCeEEE
Q 017153 274 TCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDI 353 (376)
Q Consensus 274 t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~ 353 (376)
+||||||+|||+.++|++++++++.+|++++|+++|||++++.++.+.+|+|+++.|+|+|+|||+|.|.. .++++++
T Consensus 237 t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~~v~v~~~~~~~~~p~~~~v~g~~~~~ig~~r~d~~--~~~~l~~ 314 (339)
T TIGR01296 237 TCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAPGVVLIDDPSGNLYPTPLEAVGEDEVFVGRIRKDLS--DDNGLHL 314 (339)
T ss_pred EeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCCCCEEeCCCccCCCCCCeEeCCCCeEEEEEEEecCC--CCCEEEE
Confidence 99999999999999999999999999999999999999999764334589999999999999999987643 3589999
Q ss_pred EEEechHHhhHHHHHHHHHHhcC
Q 017153 354 FVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 354 ~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|+++|||+||||||||||||+++
T Consensus 315 ~~~~DNl~kGAA~~Avq~~e~~~ 337 (339)
T TIGR01296 315 WVVADNLRKGAALNSVQIAELLI 337 (339)
T ss_pred EEEEhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999864
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=559.49 Aligned_cols=331 Identities=26% Similarity=0.386 Sum_probs=302.5
Q ss_pred CEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
+||||+||||.||++++++|. +++||..++..++|+++.|+.+.+.++.+.++++++. .|.++|+||+|+|.++++++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 489999999999999999888 7788889999999999999998887777788887664 78999999999999999999
Q ss_pred HHHHHhCC--CeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcE--EEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 118 GPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL--IANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 118 ~~~~~~~G--~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~i--Va~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
++++.++| |.|||+|++|||++++|+++||||++.+... ....+ |+||||++++++++|+||++.++|++++
T Consensus 81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~----~~~gi~~ianPNCst~~l~~aL~pL~~~~~i~~v~ 156 (366)
T TIGR01745 81 YPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDG----LNNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVS 156 (366)
T ss_pred HHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhH----HhCCcCeEECcCHHHHHHHHHHHHHHhccCccEEE
Confidence 99999999 8899999999999999999999999988741 01345 8999999999999999999999999999
Q ss_pred EEEEccccccChHhHHHHHHHhhhhhc--------CC-----------------CCCcccccccccccccccCCCCcCCC
Q 017153 194 VSTYQAASGAGAAAMEELELQTREVLE--------GK-----------------PPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 194 v~t~~gvSGaGr~~~~~l~~q~~~~~~--------~~-----------------~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
|+|||++||||++++++|.+|+..+++ +. +.++..|+++++||+|||++.+.++|
T Consensus 157 VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g 236 (366)
T TIGR01745 157 VATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNG 236 (366)
T ss_pred EEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCCCcccCCCcccccccCcCCCccCCC
Confidence 999999999999999999999998766 33 55678899999999999999999999
Q ss_pred chHHHHHHHHHHHHHhCC-CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh-CCCcEEeeCC--CCCCCCc
Q 017153 249 YNEEEMKMVKETRKIWND-KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN-APGVVVIDDR--ASNHFPT 324 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~-~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~-~~~v~v~~~~--~~~~~p~ 324 (376)
|++||+|++.|++|||+. ..+.|++||+||||++||+.+++++++++++.++++++|++ .|+|++++++ ....||+
T Consensus 237 ~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~i~~~L~~~~~gv~v~d~~~~~~~~ypt 316 (366)
T TIGR01745 237 QSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLETIEEIIRAHNPWVKVVPNDREITMRELT 316 (366)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHhCCCCEEEecCCcccccCCcC
Confidence 999999999999999987 78999999999999999999999999999999999999999 5999999875 2344999
Q ss_pred cccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 325 PLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 325 ~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|.++.|++.|+|||+|+|.. .++++++|+++||||||||.+--..+|+++
T Consensus 317 P~~~~G~d~v~VGRiR~d~~--~~~~l~lw~v~DnlrkGAA~~~~~~~~~~~ 366 (366)
T TIGR01745 317 PAAVTGTLTIPVGRLRKLNM--GPEYLSAFTVGDQLLWGAAEPLRRMLRILA 366 (366)
T ss_pred CcccCCCCceEEeccccCCC--CCCEEEEEEeechhhhhhHhHHHHHHHHhC
Confidence 99999999999999998765 348999999999999999999988888864
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-73 Score=544.86 Aligned_cols=328 Identities=52% Similarity=0.812 Sum_probs=294.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce-eeecCcceEEee--cCccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEE--LTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~-~~~~~~~~~v~~--~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
++||||+||||.||++++++|.+++||..++.+++|.+++|+. ..+++..+.+.+ .+.+.|.++|+||+|.|..+++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHH
Confidence 4799999999999999999999965555557788999999998 667655555655 4566788999999999999999
Q ss_pred hhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCC-cEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~-~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
++++++.++||.|||+|+.|||++|+|+++||||++.+.... +. +||+||||+++.++++|+||+++++|+++.|
T Consensus 81 ~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~----~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 81 EVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ----KRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred HHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhh----hCCCEEECCChHHHHHHHHHHHHHhhcCceEEEE
Confidence 999999999999999999999999999999999999987532 12 5999999999999999999999999999999
Q ss_pred EEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEE
Q 017153 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTAT 274 (376)
Q Consensus 195 ~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t 274 (376)
+|||++||||+++++++.+|+...+++.++.+. +.++|||+|||+..+.++||++||+|+..|++|||+...+.|++|
T Consensus 157 sTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~--~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~Vsat 234 (334)
T COG0136 157 STYQAVSGAGAEGGVELAGQTDALLNGIPILPI--GYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSAT 234 (334)
T ss_pred EEeehhhhcCccchhhHHHHHhhhccCcccccc--cccccccccccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEE
Confidence 999999999999999999999988777655444 789999999999999999999999999999999999888999999
Q ss_pred EEEecccceeEeeEEEEeCCCCCHHHHH-HHHHhCCCcEEeeCCCCCCCC-ccccccCCCceEEEEEEeccCCCCCCeEE
Q 017153 275 CIRVPVMRAHAESVNLQFEKPLDEDTAR-DILKNAPGVVVIDDRASNHFP-TPLEVSNKDDVAVGRIRRDVSQDGNHGLD 352 (376)
Q Consensus 275 ~~~VPv~rG~~~ti~v~l~~~~s~~ei~-~~~~~~~~v~v~~~~~~~~~p-~~~~v~g~~~v~vg~~~~~~~~~~~~~~~ 352 (376)
|+||||++||+.+++++++++++.+|++ +++.++|++.+++... .+| +|.++.|++.+.|||+|+|.. ..+.+.
T Consensus 235 cvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap~v~v~~~~~--~~P~~~~d~~g~~~v~VGRiR~d~~--~~~~l~ 310 (334)
T COG0136 235 CVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPGVVVVDNPE--DRPQTPLDATGGDEVSVGRIRKDLS--GPEGLK 310 (334)
T ss_pred EEEcceecccceEEEEEecCCCCHHHHHHHHhccCCCcEEEeCCc--cCccChhhhcCCCceEEeEeeecCC--CCCcEE
Confidence 9999999999999999999999999999 5577789999998754 578 556999999999999998854 347799
Q ss_pred EEEEechHHhhHHHHHHHHHHhcC
Q 017153 353 IFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 353 ~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+|++.|||+||||+++||+||+++
T Consensus 311 ~~~v~dNl~~GAA~~av~iaE~L~ 334 (334)
T COG0136 311 LWVVGDNLRKGAALNAVLIAELLL 334 (334)
T ss_pred EEEEechhhhhhHHHHHHHHHhhC
Confidence 999999999999999999999764
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-73 Score=541.35 Aligned_cols=308 Identities=22% Similarity=0.344 Sum_probs=285.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+++||| ||||.+|++++++|.+++||.-++..+.++ ++.|+.+.|+++++.++++++++|.++|++|+ .+.+++++|
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s~~~ 80 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQAEH 80 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHHHHH
Confidence 689999 999999999999999999999999999998 99999999998999999999889999999999 999999999
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEE
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~ 197 (376)
++.+.++||.|||+|++|||++++|+++||+|++.++.++ +..||+||||+|++++++|+||++.++|++++++||
T Consensus 81 ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~----~~~IIanPNCsTi~l~~aL~pL~~~~~l~rv~VsTy 156 (322)
T PRK06901 81 LAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELR----QRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVTSL 156 (322)
T ss_pred HHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCc----CCCEEECCcHHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 9999999999999999999999999999999999998531 246999999999999999999999999999999999
Q ss_pred ccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCC-cEEEEEE
Q 017153 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDV-RVTATCI 276 (376)
Q Consensus 198 ~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~-~v~~t~~ 276 (376)
|++||+|++|+++|.+|+..++++++..+.. ++++||++||++. ++++|++||| +++ +|+.||+
T Consensus 157 QavSGaG~~gv~eL~~qt~~~~n~~~~~~~~--~~iAFNviP~ig~-----------~m~~EtrKIl--~~l~~VsaTcV 221 (322)
T PRK06901 157 LPASYTDAETVKKLAGQTARLLNGIPLDEEE--QRLAFDVFPANAQ-----------NLELQLQKIF--PQLENVTFHSI 221 (322)
T ss_pred cchhhcCHhHHHHHHHHHHHHhCCCCCCCCc--eeeeccccccCCc-----------cHHHHHHHHh--CCcccEEEEEE
Confidence 9999999999999999999999987654443 8999999999984 2678899999 466 8999999
Q ss_pred EecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcccc---c-cCCCc--eEEEEEEeccCCCCCCe
Q 017153 277 RVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLE---V-SNKDD--VAVGRIRRDVSQDGNHG 350 (376)
Q Consensus 277 ~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~---v-~g~~~--v~vg~~~~~~~~~~~~~ 350 (376)
||||++||+.+++++++++++.++++++|+++|+|.+++++ ||+|.+ + .|++. ++|||+|.+ + ++
T Consensus 222 RVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~gv~l~d~~----yPtPi~~~~~~~g~d~vvv~Vgrir~~---~--~~ 292 (322)
T PRK06901 222 QVPVFYGLAQMVTALSEYELDIESQLAEWQQNNLLRYHEEK----LITPVLNGENENGEESVKLHISQLSAV---E--NG 292 (322)
T ss_pred EcceeccEEEEEEEEECCCCCHHHHHHHHHhCCCcEEeCCC----CCCCcccccccCCCCCccEEEEccccC---C--CE
Confidence 99999999999999999999999999999999999999753 999997 6 79999 999999852 3 89
Q ss_pred EEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 351 LDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 351 ~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|++|++.||||||||.||||++|+|+
T Consensus 293 l~lwvvaDNlRkGAA~NAVqIaE~l~ 318 (322)
T PRK06901 293 VQFWSVADEQRFNLAFLAVKLLELIY 318 (322)
T ss_pred EEEEEEechHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999874
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-72 Score=537.41 Aligned_cols=300 Identities=23% Similarity=0.345 Sum_probs=258.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC------cceEEeecCccC--CCCCcEEEEcC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD------KAYTVEELTEDS--FDGVDIALFSA 109 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~------~~~~v~~~~~~~--~~~~DvVf~a~ 109 (376)
+++||+|+|||||+|.||+|+|.+| |++|+..++|++.+|+.++... .++.+..++++. ..++|+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEec
Confidence 3699999999999999999999998 9999888888888999877522 224444444444 35699999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCCCCCCC-------------------CCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMV-------------------ENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~~~R~~-------------------~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
|+++|+++++++.+.|++|||+|+|||++ +++.||+||+++++|+ ++++|||||
T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~-------~A~lIAnPG 151 (349)
T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIR-------GAKLIANPG 151 (349)
T ss_pred CchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHh-------cCCEeeCCC
Confidence 99999999999999999999999999998 4578999999999998 799999999
Q ss_pred chHHHHHHHHhHHHHhCCCc--E-EEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 171 CSTIICLMAATPLHRRAKVT--R-MVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~--~-v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||+||.+++|+||.+...|+ . ++|++++|+|||||++... .++ +++.++..+|++.-|+|. ||
T Consensus 152 CypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~-------~~~-----~e~~~~~~~Y~~~~HrH~-pE- 217 (349)
T COG0002 152 CYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVK-------NHF-----PEVNDSLRPYGLTGHRHT-PE- 217 (349)
T ss_pred chHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCcccc-------ccc-----hhhccccccccccccCch-HH-
Confidence 99999999999999998764 4 6999999999999998874 233 556668899999999999 88
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCC
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFP 323 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p 323 (376)
++|++ .++-+ ....++||||.+|+.|||++|+|+.+++.++.+|++++|++ .|||||++.. .+|
T Consensus 218 --i~q~l------~~l~~-~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~---~~P 285 (349)
T COG0002 218 --IEQHL------GRLAG-RKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEG---GYP 285 (349)
T ss_pred --HHHHh------hhccc-CcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCC---CCC
Confidence 66664 33333 44669999999999999999999999999999999999887 5999999753 589
Q ss_pred ccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 324 TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 324 ~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++++|.|||+|+||. ..| +++++++++++||||+||||||||||||+|+
T Consensus 286 ~~k~V~GsN~cdIgf-~~d---~~~~rvvvvsaIDNL~KGAAGQAVQnmNim~ 334 (349)
T COG0002 286 DTKAVAGSNFCDIGF-AVD---ERTGRVVVVSAIDNLVKGAAGQAVQNMNIMF 334 (349)
T ss_pred ChhhhcCCcceEEEE-EEc---CCCCEEEEEEEeccccccHHHHHHHHHHHHc
Confidence 999999999999994 444 3568999999999999999999999999985
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=539.89 Aligned_cols=298 Identities=25% Similarity=0.389 Sum_probs=258.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeecCc------ceEEeecCccCC-CCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQDK------AYTVEELTEDSF-DGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~~~------~~~v~~~~~~~~-~~~DvVf~a~~~ 111 (376)
|||+|+|||||+|++++++|.+| |.++++.+ .|+++.|+.+..... ++.+.+.+.+++ .++|+||+|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCc
Confidence 58999999999999999999987 99999965 677778886652111 233444444445 489999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCCCCCC-------------------CCcEEeeccCHHhhcCcccCCCCCcEEEcCCch
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAFRMVE-------------------NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~R~~~-------------------~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~ 172 (376)
+.++++++++.++|++|||+|++||+++ +++|++||+|+++++ +.++|||||||
T Consensus 79 ~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~-------~~~iianPgC~ 151 (346)
T TIGR01850 79 GVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIK-------GARLIANPGCY 151 (346)
T ss_pred hHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhC-------CCcEEEcCCcH
Confidence 9999999999999999999999999987 689999999999998 68899999999
Q ss_pred HHHHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 173 TIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 173 ~ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
+|+++++|+||++.++|+ +++|+++||+|||||++++++. + .++.++..+||++||+|+ +|
T Consensus 152 ~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~-------~-----~~~~~~~~~y~~~~h~h~-~E---- 214 (346)
T TIGR01850 152 PTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANH-------F-----PEVNENLRPYKVTGHRHT-PE---- 214 (346)
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCcccccc-------c-----hhhcCCeeeeccCCcCcH-HH----
Confidence 999999999999999887 7999999999999999998652 2 233456779999999998 55
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHH----hCCCcEEeeCCCCCCCCccc
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILK----NAPGVVVIDDRASNHFPTPL 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~----~~~~v~v~~~~~~~~~p~~~ 326 (376)
+.+|++++++ .+++|+||||||||+|||+.++|++++++++.++++++|+ ++|||+|.++ +.+|+|+
T Consensus 215 -----i~~~l~~~~~-~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~---~~~p~~~ 285 (346)
T TIGR01850 215 -----IEQELGRLAG-GKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPE---GEYPSTK 285 (346)
T ss_pred -----HHHHHHHhcC-CCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCC---CCCcChH
Confidence 4445677776 5678999999999999999999999999999999999998 5799999865 3589999
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++.|+|+|+|| ++.|. .++++++|+++|||+||||||||||||+|+
T Consensus 286 ~v~g~n~~~ig-~~~d~---~~~~l~~~~~~DNL~KGAAg~AVq~~n~~~ 331 (346)
T TIGR01850 286 AVIGSNFCDIG-FAVDE---RTGRVVVVSAIDNLVKGAAGQAVQNMNLMF 331 (346)
T ss_pred HhcCCCeEEEE-EEEcC---CCCEEEEEEEeechhhhHHHHHHHHHHHHc
Confidence 99999999999 77763 357999999999999999999999999985
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-68 Score=528.31 Aligned_cols=312 Identities=19% Similarity=0.253 Sum_probs=254.4
Q ss_pred ceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC-----cce-EEeecCccCCC
Q 017153 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-----KAY-TVEELTEDSFD 100 (376)
Q Consensus 27 ~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~-----~~~-~v~~~~~~~~~ 100 (376)
.|+..+.....+++||+|+|||||+|++|+|+|.+| |++++..++++++.|+.+.+.. .+. .+.+.+.+++.
T Consensus 26 ~~~~~~~~~~~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~ 103 (381)
T PLN02968 26 VSSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS 103 (381)
T ss_pred cccCCCccccccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc
Confidence 444444444456789999999999999999999998 9999999999888998776422 122 24444444568
Q ss_pred CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCC--------Cc-----------EEeeccCHHhhcCcccCCC
Q 017153 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN--------VP-----------LVIPEVNPEAMSGIKVGMG 161 (376)
Q Consensus 101 ~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~--------~~-----------~~lpevN~~~i~~~~~~~~ 161 (376)
++|+||+|+|++.+.++++.+ ++|++|||+|++||++++ +| |++||+|+++++
T Consensus 104 ~~DvVf~Alp~~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~------- 175 (381)
T PLN02968 104 DVDAVFCCLPHGTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIK------- 175 (381)
T ss_pred CCCEEEEcCCHHHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhc-------
Confidence 899999999999999999996 689999999999999986 33 899999999987
Q ss_pred CCcEEEcCCchHHHHHHHHhHHHHhCCC--cEEEEEEEccccccChHhHHH-HHHHhhhhhcCCCCCccccccccccccc
Q 017153 162 KGALIANPNCSTIICLMAATPLHRRAKV--TRMVVSTYQAASGAGAAAMEE-LELQTREVLEGKPPTCKIFSQQYAFNLF 238 (376)
Q Consensus 162 ~~~iVa~PgC~~ta~~l~L~pL~~~~~i--~~v~v~t~~gvSGaGr~~~~~-l~~q~~~~~~~~~~~~~~~~~~~a~nii 238 (376)
++++|||||||+|+++++|+||+++++| ++++|+++||+|||||+++++ +..|+. ++..+|++.
T Consensus 176 ~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~-------------~n~~~y~~~ 242 (381)
T PLN02968 176 SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIA-------------EGIGAYGVT 242 (381)
T ss_pred CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhc-------------ccceeeccC
Confidence 6889999999999999999999999999 689999999999999999986 332222 122344444
Q ss_pred ccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh-CCCcEEeeCC
Q 017153 239 SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN-APGVVVIDDR 317 (376)
Q Consensus 239 ph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~-~~~v~v~~~~ 317 (376)
-|+|. +| +++++ .++++ .+..|+||||||||+|||+.++|++++++++.++++++|++ ++.+.+++..
T Consensus 243 ~h~h~-pE---ie~~~------~~~~~-~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~~ 311 (381)
T PLN02968 243 RHRHV-PE---IEQGL------ADAAG-SKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVL 311 (381)
T ss_pred CCCCc-ch---HHHHH------HHHhC-CCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEeC
Confidence 45555 44 44443 35554 46789999999999999999999999999999999999998 4444344332
Q ss_pred CCCCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 318 ASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 318 ~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.+.+|+|+++.|+|+|+||+++.+ .++++++|+++|||+||||||||||||+|+
T Consensus 312 ~~~~~P~~~~v~gtn~~~ig~~~~~----~~~~l~~~~~~DNL~KGAAgqAVQ~~nl~~ 366 (381)
T PLN02968 312 ERGAVPHTDHVRGSNYCELNVFADR----IPGRAIIISVIDNLVKGASGQAVQNLNLMM 366 (381)
T ss_pred CCCCCCChHHHCCCCcEEEEEEEeC----CCCEEEEEEEeccHHHHHHHHHHHHHHHHh
Confidence 3345899999999999999999853 348999999999999999999999999984
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-68 Score=509.85 Aligned_cols=291 Identities=18% Similarity=0.236 Sum_probs=247.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~~ 118 (376)
.||+|+|||||+|.||+|+|.+| |+++++.+++++. +...+.+. +.++|+||+|+|++++++++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~~~-------------~~~~~~~~~~~~~D~vFlalp~~~s~~~~ 66 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPDRR-------------KDAAERAKLLNAADVAILCLPDDAAREAV 66 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecccc-------------cCcCCHhHhhcCCCEEEECCCHHHHHHHH
Confidence 58999999999999999999998 9999999987643 11112222 36899999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcE---EEEE
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTR---MVVS 195 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~---v~v~ 195 (376)
+++.++|++|||+|++||++++++|++||+|.+..+.++ ++++|||||||+|+++++|+||++.+.|++ ++++
T Consensus 67 ~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~----~a~lIAnPgC~aTa~~LaL~PL~~~~li~~~~~~~~~ 142 (310)
T TIGR01851 67 SLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR----NSKRIANPGCYPTGFIALMRPLVEAGILPADFPITIN 142 (310)
T ss_pred HHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc----cCCEEECCCCHHHHHHHHHHHHHHcCCccccceEEEE
Confidence 999999999999999999999999999999655443221 688999999999999999999999988853 7899
Q ss_pred EEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccccc-ccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEE
Q 017153 196 TYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF-SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTAT 274 (376)
Q Consensus 196 t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~nii-ph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t 274 (376)
++||+|||||++++++++|+. + .++.++.++|++. .|+|. || |+|+++ .. ..+.||
T Consensus 143 a~SG~SGAGr~~~~~l~~q~~---~-----~e~~~~~~~Y~~~~~HrH~-pE---i~q~l~----------~~-~~v~Ft 199 (310)
T TIGR01851 143 AVSGYSGGGKAMIADYEQGSA---D-----NPSLQPFRIYGLALTHKHL-PE---MRVHSG----------LA-LPPIFT 199 (310)
T ss_pred eccccCccChhhhHHhhhccc---c-----hhhccCceeccCCCCCCcH-HH---HHHHhC----------CC-CCEEEE
Confidence 999999999999998766543 1 4566778899999 99999 87 666542 11 569999
Q ss_pred EEEecccceeEeeEEEEe---CCCCCHHHHHHHHHh----CCCcEEeeCCC----CCCCCccccccCCCceEEEEEEecc
Q 017153 275 CIRVPVMRAHAESVNLQF---EKPLDEDTARDILKN----APGVVVIDDRA----SNHFPTPLEVSNKDDVAVGRIRRDV 343 (376)
Q Consensus 275 ~~~VPv~rG~~~ti~v~l---~~~~s~~ei~~~~~~----~~~v~v~~~~~----~~~~p~~~~v~g~~~v~vg~~~~~~ 343 (376)
||.+|++||++.|+|+++ +++++.+|++++|++ +|||+|++... ++.+|++++|.|||+|+|+... |
T Consensus 200 Phl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~~~~~~~~~~~~~p~~k~v~gtn~~~i~~~~-d- 277 (310)
T TIGR01851 200 PAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVAPLDDVETLDNTFLDPQGLNGTNRLDLFVFG-S- 277 (310)
T ss_pred eEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEecCCcccccccCCCChHHhCCCceEEEEEEE-c-
Confidence 999999999999999999 888999999888886 59999985431 1237999999999999999876 3
Q ss_pred CCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 344 SQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 344 ~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++++++++++++|||+||||||||||||+|+
T Consensus 278 --~~~~~~vv~saiDNL~KGAaGqAvQnmNlm~ 308 (310)
T TIGR01851 278 --DDGERALLVARLDNLGKGASGAAVQNLNIML 308 (310)
T ss_pred --CCCCEEEEEEEccccccchHHHHHHHHHHHc
Confidence 3568999999999999999999999999985
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-67 Score=515.03 Aligned_cols=296 Identities=26% Similarity=0.400 Sum_probs=254.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC---c---ceEEeecCccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD---K---AYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~---~---~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
++||+|+||||++|+++++.|.++ |.++++++.++++.|+.+.... . ...+.+.+...+.++|+||+|+|++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 489999999999999999999987 9999999988777776654211 1 2234444433456899999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCCCCC-C------------------CcEEeeccCHHhhcCcccCCCCCcEEEcCCchH
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFRMVE-N------------------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R~~~-~------------------~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ 173 (376)
.+.++++++.++|+.|||+|++||+++ + ++|++||+|+++++ ++++|||||||+
T Consensus 80 ~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~-------~~~iIanPgC~~ 152 (343)
T PRK00436 80 VSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIK-------GARLIANPGCYP 152 (343)
T ss_pred HHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhc-------CCCEEECCCCHH
Confidence 999999999999999999999999976 4 79999999999998 568999999999
Q ss_pred HHHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchH
Q 017153 174 IICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251 (376)
Q Consensus 174 ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ 251 (376)
|+++++|+||++.++|+ +++|+++||+||||++++++++.+ +..++..+||++||+|. +| +.
T Consensus 153 t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~------------~~~~~~~~y~~~~h~h~-~E---i~ 216 (343)
T PRK00436 153 TASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFS------------EVNENLRPYKVGGHRHT-PE---IE 216 (343)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccch------------hhcCCeeecccCCCCCH-HH---HH
Confidence 99999999999998887 899999999999999999875322 22345669999999998 65 43
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHH----hCCCcEEeeCCCCCCCCcccc
Q 017153 252 EEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILK----NAPGVVVIDDRASNHFPTPLE 327 (376)
Q Consensus 252 ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~----~~~~v~v~~~~~~~~~p~~~~ 327 (376)
+ |++++++ .|+||||||||+|||+.++|+++++++|.+|++++|+ +.|||+|.++. .+|+|++
T Consensus 217 ~------~l~~~~~----~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~v~v~~~~---~~p~~~~ 283 (343)
T PRK00436 217 Q------ELSALAG----EVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYADEPFVRVLPEG---QYPETKS 283 (343)
T ss_pred H------HHHHhcC----CEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCC---CCcchhh
Confidence 3 4466654 6999999999999999999999999999999999999 57999998653 5899999
Q ss_pred ccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 328 VSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 328 v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.|+|+|+|| ++.|. ..+++++|+++|||+||||||||||||+|+
T Consensus 284 v~g~~~~~ig-~~~d~---~~~~~~~~~~~DNL~kGAA~~Avq~~nl~~ 328 (343)
T PRK00436 284 VRGSNFCDIG-FAVDE---RTGRLVVVSAIDNLVKGAAGQAVQNMNIMF 328 (343)
T ss_pred hCCCCeEEEE-EEEcC---CCCEEEEEEEecccchhHHHHHHHHHHHHc
Confidence 9999999999 88763 348999999999999999999999999985
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-67 Score=504.85 Aligned_cols=292 Identities=17% Similarity=0.171 Sum_probs=246.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
|++||||+|||||+|++|+|+|.+| |++++..+.++... ++ ..+.+.+.++|+||+|+|+++++++
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~h--p~~~l~~~~s~~~~---------~~---~~~~~~~~~~DvvFlalp~~~s~~~ 66 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEAKRK---------DA---AARRELLNAADVAILCLPDDAAREA 66 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEecCCCC---------cc---cCchhhhcCCCEEEECCCHHHHHHH
Confidence 3689999999999999999999998 99999988765432 11 1123446789999999999999999
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCc---EEEE
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVT---RMVV 194 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~---~v~v 194 (376)
++++.++|++|||+|+|||++++++|++||+|++..+.++ +.++|||||||+|+++++|+||++.+.++ .+++
T Consensus 67 ~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~----~~~~IanPgC~~Ta~~laL~PL~~~~li~~~~~i~i 142 (313)
T PRK11863 67 VALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA----AAKRVANPGCYPTGAIALLRPLVDAGLLPADYPVSI 142 (313)
T ss_pred HHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh----cCCeEEcCCcHHHHHHHHHHHHHHcCCcccCceEEE
Confidence 9999999999999999999999999999999765443221 57899999999999999999999988885 4889
Q ss_pred EEEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccccc-ccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEE
Q 017153 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF-SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTA 273 (376)
Q Consensus 195 ~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~nii-ph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~ 273 (376)
++++|+|||||+++++++ ..+ .++.++.++|++. .|+|. +| ++++ ++.. ..+.|
T Consensus 143 ~a~SG~SGAG~~~~~~~~-----~~~-----~~~~~n~~~Y~~~~~HrH~-pE---i~~~----------l~~~-~~~~F 197 (313)
T PRK11863 143 NAVSGYSGGGKAMIAAYE-----AAP-----DGKAPAFRLYGLGLAHKHL-PE---MQAH----------AGLA-RRPIF 197 (313)
T ss_pred EEccccccCCccchHHHh-----hhh-----hhhccCeeeccCCcCCcch-HH---HHHH----------hccc-cCcEE
Confidence 999999999999998641 002 5688889999999 99999 76 4444 3322 56889
Q ss_pred EEEEecccceeEeeEEEEe---CCCCCHHHHHHHHHh----CCCcEEeeCCC--CCCCCccccccCCCceEEEEEEeccC
Q 017153 274 TCIRVPVMRAHAESVNLQF---EKPLDEDTARDILKN----APGVVVIDDRA--SNHFPTPLEVSNKDDVAVGRIRRDVS 344 (376)
Q Consensus 274 t~~~VPv~rG~~~ti~v~l---~~~~s~~ei~~~~~~----~~~v~v~~~~~--~~~~p~~~~v~g~~~v~vg~~~~~~~ 344 (376)
+||.+|++|||+.|+|+++ +++++.+|++++|++ +|||+|++... ...+|++++|.|+|+|+|+..+ +
T Consensus 198 ~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~~~~~~~~~p~~~~v~gtn~~~i~v~~-~-- 274 (313)
T PRK11863 198 TPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPLDESAALDFLDPEALNGTNRLELFVFG-N-- 274 (313)
T ss_pred EeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecCCcccccCCCCHHHhCCCCeEEEEEEE-c--
Confidence 9999999999999999997 888999999999987 49999986531 1126889999999999999887 3
Q ss_pred CCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 345 QDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 345 ~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++++++.+++++|||+||||||||||||+|+
T Consensus 275 -~~~~~~~v~s~iDNL~KGAAGqAvQn~Nl~~ 305 (313)
T PRK11863 275 -EDHGQAVLVARLDNLGKGASGAAVQNLNLML 305 (313)
T ss_pred -CCCCEEEEEEEcccccccHHHHHHHHHHHHc
Confidence 2457999999999999999999999999985
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-62 Score=481.37 Aligned_cols=299 Identities=35% Similarity=0.492 Sum_probs=252.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeec------------CcceEEeecCccCCCCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ------------DKAYTVEELTEDSFDGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~------------~~~~~v~~~~~~~~~~~DvVf 106 (376)
+||+|+||||++|++|+++|.+| |.++++.+ .++++.|+.+... ..++.+.+.+++.+.++|+||
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEE
Confidence 58999999999999999999988 88999887 4555677765421 123445555555668899999
Q ss_pred EcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccC---CCCCcEEEcCCchHHHHHHHHhHH
Q 017153 107 FSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG---MGKGALIANPNCSTIICLMAATPL 183 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~---~~~~~iVa~PgC~~ta~~l~L~pL 183 (376)
+|+|++++.++++++.++|++|||+|++||+++++++.+||+|.+.+...+.+ .+++++|||||||+|+++++|+||
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~t~~~lal~pL 158 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPL 158 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998866532211 225679999999999999999999
Q ss_pred HHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHH
Q 017153 184 HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263 (376)
Q Consensus 184 ~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~i 263 (376)
+++++|++++++++||+||+|+.+.+. ..+++|++|+.+. +|.+...|+.++
T Consensus 159 ~~~~~i~~v~v~t~~gvSgaG~~~~~~--------------------~~~~~Ni~py~~~--------~ehrh~~Ei~~i 210 (341)
T TIGR00978 159 IDAFGIKKVHVTTMQAVSGAGYPGVPS--------------------MDILDNIIPHIGG--------EEEKIERETRKI 210 (341)
T ss_pred HHhCCCcEEEEEEEEccCCCCCCCCcc--------------------chhhCCeEecCcH--------HHHHHHHHHHHH
Confidence 999999999999999999999986531 2357899998765 567888899999
Q ss_pred hCCC--------CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC--------------CCcEEeeCCCCCC
Q 017153 264 WNDK--------DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA--------------PGVVVIDDRASNH 321 (376)
Q Consensus 264 l~~~--------~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~--------------~~v~v~~~~~~~~ 321 (376)
|+.. .+.|+|+|||||++|||++++|++++++++.++++++|+++ |||++.++ +.
T Consensus 211 l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~~~~---~~ 287 (341)
T TIGR00978 211 LGKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIVRDE---ED 287 (341)
T ss_pred hCccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEECCC---CC
Confidence 9753 56799999999999999999999999999999999999863 55788744 35
Q ss_pred CCcccccc--CCCc-eEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 322 FPTPLEVS--NKDD-VAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 322 ~p~~~~v~--g~~~-v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+|+|+++. |+|+ |+||+++.+ ++++++|+++|||+||||||||||||+|+
T Consensus 288 ~p~~~~~~~~g~~~~~~ig~~~~~-----~~~l~~~~~~DNl~kGaA~~avq~~n~~~ 340 (341)
T TIGR00978 288 RPQPRLDRDAGGGMAVTVGRLREE-----GGSLKYVVLGHNLVRGAAGATLLNAELAY 340 (341)
T ss_pred CCCcceeeecCCCceEEEEeEECC-----CCeEEEEEEEchHHHHHHHHHHHHHHHHh
Confidence 89999777 9988 999987743 37999999999999999999999999985
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=471.95 Aligned_cols=300 Identities=35% Similarity=0.513 Sum_probs=249.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeec------------CcceEEeecCccCCCCCcE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ------------DKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~------------~~~~~v~~~~~~~~~~~Dv 104 (376)
+++||+|+||||++|++|+++|.+| |.++++.+ .++++.|+.+... ..++.+...+++.+.++|+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Dv 79 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVDI 79 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCCE
Confidence 3599999999999999999999987 99999998 7777888766421 1234555556666778999
Q ss_pred EEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccC----CCCCcEEEcCCchHHHHHHHH
Q 017153 105 ALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG----MGKGALIANPNCSTIICLMAA 180 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~----~~~~~iVa~PgC~~ta~~l~L 180 (376)
||+|+|++++.++++++.++|++|||+|++||+++++++.+||+|++.+...+.. +.+.++|||||||+|+++++|
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~iVa~p~C~~t~~~l~l 159 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLAL 159 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCceEEEccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999888999999998765321111 024579999999999999999
Q ss_pred hHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHH
Q 017153 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET 260 (376)
Q Consensus 181 ~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~ 260 (376)
+||++ +++++++++++||+||+|+++.+.+ .+++|++|+..+ +|.+...|+
T Consensus 160 ~pL~~-~gl~~i~v~~~~g~SgaG~~~~~~~--------------------~~~~N~~p~~~~--------~ehrh~~Ei 210 (349)
T PRK08664 160 KPLMD-FGIERVHVTTMQAISGAGYPGVPSM--------------------DIVDNVIPYIGG--------EEEKIEKET 210 (349)
T ss_pred HHHHH-CCCcEEEEEEEeccccCCcccchhh--------------------hhhcCcccccCc--------hhhhhhHHH
Confidence 99999 8999999999999999999877521 146788887654 445666667
Q ss_pred HHHhCC--------CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC--------------CCcEEeeCCC
Q 017153 261 RKIWND--------KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA--------------PGVVVIDDRA 318 (376)
Q Consensus 261 ~~il~~--------~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~--------------~~v~v~~~~~ 318 (376)
.++++. ++++|+|+|||||++|||+.++|++++++++.+|++++|+++ |||+++++
T Consensus 211 ~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fv~~~~~-- 288 (349)
T PRK08664 211 LKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKGLPQELGLPSAPKKPIILFEE-- 288 (349)
T ss_pred HHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccCccccccCCCCCCceEEEeCC--
Confidence 777754 367899999999999999999999999999999999999964 56888854
Q ss_pred CCCCCccccccCCCc---eEEEEEEeccCCCCCC-eEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 319 SNHFPTPLEVSNKDD---VAVGRIRRDVSQDGNH-GLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 319 ~~~~p~~~~v~g~~~---v~vg~~~~~~~~~~~~-~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.+|+|+++.|+|+ +++||+|.+ .+ ++++|+++|||+||||||||||||+|+
T Consensus 289 -~~~p~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~DNl~kGaA~~avq~~n~~~ 344 (349)
T PRK08664 289 -PDRPQPRLDRDAGDGMAVSVGRLRED-----GIFDIKFVVLGHNTVRGAAGASVLNAELLK 344 (349)
T ss_pred -CCCCceeEEcccCCceeEEECCeeec-----CCCCEEEEEEEhHHHHHHHHHHHHHHHHHH
Confidence 25899999888887 666676653 25 899999999999999999999999874
|
|
| >KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=378.00 Aligned_cols=293 Identities=22% Similarity=0.293 Sum_probs=243.3
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec-CcceEEeecCcc------CCCCCcEEEEcC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-DKAYTVEELTED------SFDGVDIALFSA 109 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-~~~~~v~~~~~~------~~~~~DvVf~a~ 109 (376)
.+.+||+++||+||+|.+|++++.+| |++++..+.|++.+|+.+... ...+...++... +-..+|.+.+++
T Consensus 17 ~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvmaL 94 (340)
T KOG4354|consen 17 EKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMAL 94 (340)
T ss_pred CCCceEEEEeccccchhhHHHHhcCC--CceEEEeeehhhhcCCcccCcchhheeecccchhhHHHhhcCCceeeeeeec
Confidence 45799999999999999999999988 999999999999999877631 112222222211 113678899999
Q ss_pred CCchhhhhHHHHHhC--CCeEEEcCCCCCCCC--CCcEEeeccC-HHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHH
Q 017153 110 GGSISKKFGPIAVEK--GSIVVDNSSAFRMVE--NVPLVIPEVN-PEAMSGIKVGMGKGALIANPNCSTIICLMAATPLH 184 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~--G~~VIDlS~~~R~~~--~~~~~lpevN-~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~ 184 (376)
|..+.+.++...... ..++||+|+++|+.+ +|.|+|||+| |+.|+ ++++|||||||+|+..+.|.||.
T Consensus 95 Pn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-------na~~iaNPGCYaTgsQl~l~Pll 167 (340)
T KOG4354|consen 95 PNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-------NARLIANPGCYATGSQLPLVPLL 167 (340)
T ss_pred chhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-------hhhhccCCCcccccCcccchHHH
Confidence 999999888876543 356999999999987 8999999999 89998 78999999999999999999999
Q ss_pred HhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHh
Q 017153 185 RRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264 (376)
Q Consensus 185 ~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il 264 (376)
+...+.. .|+.++|+||||+++.+.. +. .+..++.++|.+-.|+|+ +| |.+
T Consensus 168 k~i~g~p-~ifgvSGySGAGtkpspkN------d~------~~l~nnlipY~ltdHiHe-rE---Is~------------ 218 (340)
T KOG4354|consen 168 KAILGKP-EIFGVSGYSGAGTKPSPKN------DY------SELANNLIPYGLTDHIHE-RE---ISQ------------ 218 (340)
T ss_pred HHhcCCc-ceeeeccccCCCCCCCCcc------CH------HHHhcCCccccccccchh-Hh---HHH------------
Confidence 9866543 4899999999999887631 11 345567788999999998 55 222
Q ss_pred CCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCCccccccCCCceEEEEEE
Q 017153 265 NDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFPTPLEVSNKDDVAVGRIR 340 (376)
Q Consensus 265 ~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~ 340 (376)
..+..|+|+||..|+|+|+..||+|++++.++.+|++++|++ +++|+|+++ +|.++++.|+++|++|.+.
T Consensus 219 -r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~dd-----vPlvkdv~gsh~v~~ggF~ 292 (340)
T KOG4354|consen 219 -RSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLDD-----VPLVKDVRGSHYVHMGGFP 292 (340)
T ss_pred -hhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeecc-----ccceeccCCcceeEecccc
Confidence 135689999999999999999999999999999999999986 588999864 6999999999999999987
Q ss_pred eccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 341 RDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 341 ~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.+ .++|.+++++||||+||||+||+||+|+|+
T Consensus 293 -~~~--~g~Ravii~tIDNLlKGAatQaLQNlNl~~ 325 (340)
T KOG4354|consen 293 -DRI--PGDRAVIISTIDNLLKGAATQALQNLNLML 325 (340)
T ss_pred -CCC--CCceEEEEEehhhhhhhHHHHHHHhhhhhh
Confidence 433 346999999999999999999999999985
|
|
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=351.23 Aligned_cols=318 Identities=53% Similarity=0.754 Sum_probs=259.0
Q ss_pred CEEE-EECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeecC------------cceEEeecCccCCCCCcEE
Q 017153 40 PSVA-VVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQD------------KAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 40 irVa-IvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~~------------~~~~v~~~~~~~~~~~DvV 105 (376)
.|+| |+|+||.+|++++.+|.+| |++++..+ +|.+++||++.+.+ .++.+++.+++.|.+||+|
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdh--P~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIv 81 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDH--PYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIV 81 (361)
T ss_pred ccccceeeccchhHHHHHHHhccC--CcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhcccccEE
Confidence 4555 9999999999999999998 99999888 78999999998743 2455667778889999999
Q ss_pred EEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccC-----CCCCcEEEcCCchHHHHHHHH
Q 017153 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG-----MGKGALIANPNCSTIICLMAA 180 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~-----~~~~~iVa~PgC~~ta~~l~L 180 (376)
|+.++.+.+.++.+.+.++|..|||++..||+++++|+++|++|+|.++.++.+ ..+..||+||||.|.+++++|
T Consensus 82 fsgldad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~pl 161 (361)
T KOG4777|consen 82 FSGLDADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPL 161 (361)
T ss_pred EecCCchhhhhhhHHHHhcCeEEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeEEeec
Confidence 999999999999999999999999999999999999999999999999876544 235779999999999999999
Q ss_pred hHHHHhCC-CcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHH
Q 017153 181 TPLHRRAK-VTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (376)
Q Consensus 181 ~pL~~~~~-i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e 259 (376)
+||+.+|| |++..++|||++||||.++..++.+++.+.+-+.+.+++.++...++++.+|...+..+|+.+||++.
T Consensus 162 kpL~~~fgpi~~~~v~t~QAiSGAG~apgv~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vs--- 238 (361)
T KOG4777|consen 162 KPLHHHFGPIKRMVVSTYQAISGAGAAPGVELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVS--- 238 (361)
T ss_pred hhHHhhccchhhhhhhhhhhhccCCcCCCchHHHHHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhh---
Confidence 99999995 78999999999999999888888778777776666667777777788888887777777777666544
Q ss_pred HHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCC--CCHHHHHHHHHh--------------CCCcEEeeCCCCCCCC
Q 017153 260 TRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKP--LDEDTARDILKN--------------APGVVVIDDRASNHFP 323 (376)
Q Consensus 260 ~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~--~s~~ei~~~~~~--------------~~~v~v~~~~~~~~~p 323 (376)
..|-||||..||...+.+.|..+ .+.+++.+++.+ .+.|.|+++.. ...|
T Consensus 239 -------------aqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~d~~klgc~sapkq~iyv~dd~a-pdrP 304 (361)
T KOG4777|consen 239 -------------AQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVLDENKLGCISAPKQGIYVIDDRA-PDRP 304 (361)
T ss_pred -------------hhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccCChhhcccccCCCCeEEEecCCC-CCCC
Confidence 45556666666666665555422 245555555543 37899998753 4679
Q ss_pred ccccccCCCc---eEEEEEEeccCCCCCC-eEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 324 TPLEVSNKDD---VAVGRIRRDVSQDGNH-GLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 324 ~~~~v~g~~~---v~vg~~~~~~~~~~~~-~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+|+...+.+. |.|||+|.|...+..- .+...+++|..+||++.++||+++.|+
T Consensus 305 qPrldrN~d~gy~VsVGRIR~D~~~D~kfv~L~hnt~~gaag~G~l~aev~ia~~Ll 361 (361)
T KOG4777|consen 305 QPRLDRNKDDGYGVSVGRIRRDVSQDGKFVVLDHNTCGGAAGKGALLAEVQIAEMLL 361 (361)
T ss_pred CcccccccCCCceeeeeeeecccccccceEEEEeeeehhhhcchhHHHHHHHHhhcC
Confidence 9998888777 9999999887644221 256678999999999999999999875
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=332.92 Aligned_cols=299 Identities=18% Similarity=0.231 Sum_probs=227.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEec---------------C--------CCCCceeeecCcceEEe--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLAS---------------K--------RSAGKQLSFQDKAYTVE-- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s---------------~--------~~~g~~~~~~~~~~~v~-- 92 (376)
++||||+|+ |++|+.++|+|.++++| .++++++.+ . ++.|+.+.++++.+.+.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 379999999 99999999999887544 688887653 1 23445555566777776
Q ss_pred -ecCccCC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 93 -ELTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 93 -~~~~~~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
+++...| .++|+||+|+|.+.++++++.++++|+++||+|+++|++++. +++||+|++.++. ...|||||
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~-~vV~gVN~~~~~~------~~~IISna 152 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDA-TVVYGVNHDQLRA------EHRIVSNA 152 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCC-eEEeCcCHHHhCc------CCCEEECC
Confidence 3334457 599999999999999999999999999999999999877654 8999999999974 46799999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+|+|++++|+||+++|+|+++.++|+|++| +|++++|+++++ .+.+|..++|+||+.+
T Consensus 153 sCTTn~Lap~lk~L~~~fgI~~~~mTT~ha~t-~~Q~~vD~~~~d------------~rr~r~~a~NiIP~~t------- 212 (336)
T PRK13535 153 SCTTNCIIPVIKLLDDAFGIESGTVTTIHSAM-NDQQVIDAYHPD------------LRRTRAASQSIIPVDT------- 212 (336)
T ss_pred chHHHHHHHHHHHHHHhcCeeEEEEEEEEhhc-CCcchhhchhhc------------cccccEeeeccccCcc-------
Confidence 99999999999999999999999999999999 789999976422 2446679999999833
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCC---cEEeeCCCCCCCCcc-
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG---VVVIDDRASNHFPTP- 325 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~---v~v~~~~~~~~~p~~- 325 (376)
++..|++|+||.++++++.+|+||||++||+.+++++++++++.||++++|++++- --++...++ |-.
T Consensus 213 -----gaa~a~~kilP~l~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~---~~VS 284 (336)
T PRK13535 213 -----KLAAGITRIFPQFNDRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTEL---PLVS 284 (336)
T ss_pred -----HHHhhhhhcccCCCCcEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCC---Cccc
Confidence 45677899999888899999999999999999999999999999999999997531 122322111 111
Q ss_pred ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 326 ~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
.+..|..+-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.++.|
T Consensus 285 ~D~~~~~~s~i~d~~~t~~-~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 332 (336)
T PRK13535 285 IDFNHDPHSAIVDGTQTRV-SGAHLIKTLVWCDN-EWGFANRMLDTTLAM 332 (336)
T ss_pred cccCCCCcceEEEcccCEE-ECCCEEEEEEEEcC-chHHHHHHHHHHHHH
Confidence 1233333211100000000 12255778888899 677776666655543
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=324.07 Aligned_cols=294 Identities=13% Similarity=0.203 Sum_probs=224.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC------------------------CCCceeeecCcceEEe--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------------------------SAGKQLSFQDKAYTVE-- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~------------------------~~g~~~~~~~~~~~v~-- 92 (376)
++||||+|+ |.+|+.++|.+.++ ++++++++.... +.|+.+.++++.+.+.
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~ 78 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQN 78 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEec
Confidence 489999999 99999999998877 789999887521 1223333455667776
Q ss_pred -ecCccCCCCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 93 -ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 93 -~~~~~~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
+++...|.++|+||+|+|.+.++++++.++++|+++||+|++ |.++++|+++||+|++.++.. ..+|||||+|
T Consensus 79 ~~~~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap-~~d~d~p~vV~gVN~~~~~~~-----~~~IISnasC 152 (334)
T PRK08955 79 KAIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP-VKEEGVLNIVMGVNDHLFDPA-----IHPIVTAASC 152 (334)
T ss_pred CChhhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC-CCCCCCceEecccCHHHhccc-----CCCEEECCcc
Confidence 444456889999999999999999999999999999999999 888788999999999999731 2579999999
Q ss_pred hHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchH
Q 017153 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251 (376)
Q Consensus 172 ~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ 251 (376)
+|+|++++|+||+++|+|+++.+||+|++|... . ++.+.+. +.+++++.++|+||+.++. +
T Consensus 153 tTn~Lap~lk~L~~~fgI~~~~mTTvha~t~~q-~-----------lld~~~~-d~r~~r~~a~NiIP~~tGa-----a- 213 (334)
T PRK08955 153 TTNCLAPVVKVIHEKLGIKHGSMTTIHDLTNTQ-T-----------ILDAPHK-DLRRARACGMSLIPTTTGS-----A- 213 (334)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEeccCcc-c-----------cccCCCc-ccccchhheeccccccCCC-----c-
Confidence 999999999999999999999999999999542 2 2333322 3488999999999998663 2
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCC---cEEeeCCCCCCCCcc-cc
Q 017153 252 EEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG---VVVIDDRASNHFPTP-LE 327 (376)
Q Consensus 252 ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~---v~v~~~~~~~~~p~~-~~ 327 (376)
.|++++||.++.+++.+++|||+++||+.+++++++++++.+|++++|++++. -.++...++ |-. .+
T Consensus 214 ------~a~~kvlP~L~gkl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~---~~vS~D 284 (334)
T PRK08955 214 ------TAITEIFPELKGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEER---PLVSID 284 (334)
T ss_pred ------cccceEccccCCcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccC---Ccccce
Confidence 35688999888889999999999999999999999999999999999998643 223322111 111 12
Q ss_pred ccCCCceEE---EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 328 VSNKDDVAV---GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 328 v~g~~~v~v---g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
..|+.+-.| ..-+. -+++-+.+++--|| -+|=|-+-+-.+..
T Consensus 285 ~~~~~~s~i~d~~~t~~----~~~~~~k~~~WyDN-E~gys~r~~dl~~~ 329 (334)
T PRK08955 285 YKTDPRSSIVDALSTMV----VNGTQVKLYAWYDN-EWGYANRTAELARK 329 (334)
T ss_pred eCCCCchHheehhcCEE----ecCCEEEEEEEeCC-chhHHHHHHHHHHH
Confidence 223222111 11110 12356888888999 66766666655544
|
|
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=316.77 Aligned_cols=296 Identities=14% Similarity=0.197 Sum_probs=224.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CCc----------eeeecCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AGK----------QLSFQDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g~----------~~~~~~~~~~v~--- 92 (376)
++||||+|+ |++||.++|.+.++ ++++++++.+... -|+ .+.++++.+.+.
T Consensus 2 ~~~i~inGf-GRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 78 (331)
T PRK15425 2 TIKVGINGF-GRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER 78 (331)
T ss_pred ceEEEEEee-ChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcC
Confidence 479999999 99999999998776 8899999975321 111 122234556665
Q ss_pred ecCccCCC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 93 ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 93 ~~~~~~~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++...|. ++|+||+|+|.+.++++++.++++|+++||+|++ +++++|+++||+|++.+. ..++||||+
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap--~~~~vp~vV~gVN~~~~~-------~~~IISnaS 149 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP--SKDNTPMFVKGANFDKYA-------GQDIVSNAS 149 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC--CCCCCCEEEcccCHHHcC-------CCCEEECCC
Confidence 33344576 9999999999999999999999999999999999 566789999999999986 457999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|++++|+||+++|+|+++.+||+|++|+. +...+ +.+.++.+++|+.++|+||+.++. .
T Consensus 150 CtTn~Lapvlk~L~~~fgI~~g~mTTvha~T~~-q~llD-----------~~~~~d~r~~R~aa~NiIPt~tGa-----a 212 (331)
T PRK15425 150 CTTNCLAPLAKVINDNFGIIEGLMTTVHATTAT-QKTVD-----------GPSHKDWRGGRGASQNIIPSSTGA-----A 212 (331)
T ss_pred cHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCc-ccccc-----------CCCCcccccCcchhhceecccCCc-----h
Confidence 999999999999999999999999999999999 64333 222346789999999999998763 2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCcc-c
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPTP-L 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~~-~ 326 (376)
.|+++++|.++++++.+++|||+++||+.+++++++++++.||++++|+++. .-.++...++ |-. .
T Consensus 213 -------~av~kIlP~L~gkl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~---~~VS~ 282 (331)
T PRK15425 213 -------KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTED---DVVST 282 (331)
T ss_pred -------HHHHhhccccCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCC---cEeee
Confidence 4578899988888999999999999999999999999999999999999742 2223322110 221 1
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+..|..+-.|=-...-.. -+++-+.+++--|| -+|=+-+-+-.++.|
T Consensus 283 D~~~~~~ssi~d~~~t~v-~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 329 (331)
T PRK15425 283 DFNGEVCTSVFDAKAGIA-LNDNFVKLVSWYDN-ETGYSNKVLDLIAHI 329 (331)
T ss_pred ecCCCCcceEEEcccCEE-ecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 333433322210000000 12256888888999 677777666665543
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=320.36 Aligned_cols=299 Identities=14% Similarity=0.192 Sum_probs=226.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec---------------C---------CCCCceeeecCcceEEee
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------K---------RSAGKQLSFQDKAYTVEE 93 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s---------------~---------~~~g~~~~~~~~~~~v~~ 93 (376)
|++||||+|+ |++|+.++|+|.++++|.++++++.+ . .+.|+.+.++++.+.+..
T Consensus 59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~ 137 (395)
T PLN03096 59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVS 137 (395)
T ss_pred cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEE
Confidence 4589999999 99999999999887778999997653 1 113444555666777753
Q ss_pred ---cCccCC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 94 ---LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 94 ---~~~~~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
++...| .++|+||+|+|.+.++++++.++++|+++||+|++ .++++|+++||+|++.++. ..+||||
T Consensus 138 ~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap--~~~~~ptvV~GVN~~~l~~------~~~IISn 209 (395)
T PLN03096 138 DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP--GKGDIPTYVVGVNADDYKH------SDPIISN 209 (395)
T ss_pred cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC--CCCCCCeEeCccCHHHhcc------CCCEEEC
Confidence 333457 58999999999999999999999999999999998 4667899999999999973 4679999
Q ss_pred CCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
|+|+|+|++++++||+++|+|+++.+||+|++|+. +..+| +.+ .+.+++|+.++|+||+.++.
T Consensus 210 aSCTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~-Q~llD-----------~~~-~d~rr~Raaa~NiIPtsTGa---- 272 (395)
T PLN03096 210 ASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLD-----------ASH-RDLRRARAAALNIVPTSTGA---- 272 (395)
T ss_pred CchHHHHHHHHHHHHHHhcCeeEEEEEEEEccccc-ccccc-----------CCC-CccccchhhhccccccCCCc----
Confidence 99999999999999999999999999999999998 33333 221 24468999999999998773
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCcc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPTP 325 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~~ 325 (376)
. .|+.++||.++++++++++|||+++||+.+++++++++++.||++++|+++ +.--++...++ |-.
T Consensus 273 -a-------kav~kVlP~L~gkl~g~avRVPv~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~---p~V 341 (395)
T PLN03096 273 -A-------KAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDE---PLV 341 (395)
T ss_pred -c-------hhhhhcccccCCcEEEEEEEccccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCC---CEe
Confidence 2 256889999888999999999999999999999999999999999999984 22122221110 211
Q ss_pred -ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 326 -LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 326 -~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
.+..|...-.|=-...-.. -+++-+.+++--|| -+|=+-+-+-.+..|
T Consensus 342 S~Df~~~~~Ssi~d~~~t~v-~~~~~vKv~~WYDN-E~Gys~r~~dl~~~~ 390 (395)
T PLN03096 342 SVDFRCSDVSSTIDSSLTMV-MGDDMVKVVAWYDN-EWGYSQRVVDLADIV 390 (395)
T ss_pred eeeecCCCCceEEEcccCEE-eCCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 1333333333310000000 12255778888999 677776666655543
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=307.46 Aligned_cols=297 Identities=15% Similarity=0.209 Sum_probs=222.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--------------CCc------------eeeecCcceEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------------AGK------------QLSFQDKAYTV 91 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--------------~g~------------~~~~~~~~~~v 91 (376)
+++||||+|+ |++|+..+|.+.++ |+++++++.++.. .|+ .+.++++.+.+
T Consensus 4 ~~lrVaI~G~-GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v 80 (338)
T PLN02358 4 KKIRIGINGF-GRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTV 80 (338)
T ss_pred CceEEEEEee-cHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEE
Confidence 3589999999 99999999998876 8999999876321 111 12223455666
Q ss_pred eecC-cc--CC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEE
Q 017153 92 EELT-ED--SF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI 166 (376)
Q Consensus 92 ~~~~-~~--~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iV 166 (376)
...+ ++ .| .++|+||+|+|.+.++++++.++++|+++||+|+. .+++|+++||+|++.++. ..++|
T Consensus 81 ~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap---~~dvp~iV~gVN~~~~~~------~~~II 151 (338)
T PLN02358 81 FGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAP---SKDAPMFVVGVNEHEYKS------DLDIV 151 (338)
T ss_pred EEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCC---CCCCCeEecCcCHHHhCC------CCCEE
Confidence 5433 33 46 58999999999999999999999999999999966 356799999999999974 46799
Q ss_pred EcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcC
Q 017153 167 ANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLE 246 (376)
Q Consensus 167 a~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e 246 (376)
|||+|+|+|++++|+||+++|||+++.+||+|++||+++ ..+ +.+.++.+++|++++|+||+.++.
T Consensus 152 SnasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~-l~d-----------~~~~~d~r~~ra~a~NiIP~~tGa-- 217 (338)
T PLN02358 152 SNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQK-TVD-----------GPSMKDWRGGRAASFNIIPSSTGA-- 217 (338)
T ss_pred ECCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccc-ccC-----------CCCCccccCccccccccccCCcch--
Confidence 999999999999999999999999999999999999964 333 221236688999999999998762
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCC---cEEeeCCCCCCCC
Q 017153 247 NGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG---VVVIDDRASNHFP 323 (376)
Q Consensus 247 ~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~---v~v~~~~~~~~~p 323 (376)
..|++++||.++++++.+++|||+++||+.+++++++++++.||++++|+++.- -.++...+ -|
T Consensus 218 ----------aka~~kIlP~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~---~~ 284 (338)
T PLN02358 218 ----------AKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTE---DD 284 (338)
T ss_pred ----------hhhhhhccccCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccC---Cc
Confidence 235789999988999999999999999999999999999999999999998531 11222111 02
Q ss_pred cc-ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 324 TP-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 324 ~~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
-. .+..|...-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.+..|
T Consensus 285 ~VS~D~~~~~~s~i~d~~~t~~-~~~~~vk~~~WyDN-E~gys~r~~dl~~~~ 335 (338)
T PLN02358 285 VVSTDFVGDNRSSIFDAKAGIA-LSDKFVKLVSWYDN-EWGYSSRVVDLIVHM 335 (338)
T ss_pred eeeeecCCCCcceEEEcccCeE-ecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 11 1233332211100000000 01256888888999 677776666665543
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=309.50 Aligned_cols=234 Identities=16% Similarity=0.218 Sum_probs=194.9
Q ss_pred EEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCC-----------------------CCCceeeecCcceEEe---e
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKR-----------------------SAGKQLSFQDKAYTVE---E 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~-----------------------~~g~~~~~~~~~~~v~---~ 93 (376)
||||+|+ |.+|+.++|.|.+++ .+.++++++.... ..|+.+.++++.+.+. +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 6999999 999999999988762 1468998886421 2233444455666665 3
Q ss_pred cCccCC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 94 LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 94 ~~~~~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
.+...| .++|+||+|+|...++++++.++++|+++||+|+++|++++. +++||+|++.++. ..+|||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~-~vV~gVN~~~~~~------~~~IISnasC 152 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDA-TIVYGVNQQDLSA------EHTIVSNASC 152 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCc-eEEeccCHHHhCC------CCCEEeCCCc
Confidence 333357 589999999999999999999999999999999999986554 8999999999974 4679999999
Q ss_pred hHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccc-cccccCCCCcCCCch
Q 017153 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAF-NLFSHNAPVLENGYN 250 (376)
Q Consensus 172 ~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~-niiph~~~~~e~g~~ 250 (376)
+|+|++++|+||+++|+|+++.+||+|++|+ |+.++|+++.++ +. .+.++ |+||+.++
T Consensus 153 tTn~lap~lk~L~~~fgI~~~~~tTvha~t~-~q~~vD~~~~d~------------r~-~r~a~~NiIP~~t~------- 211 (325)
T TIGR01532 153 TTNCIVPLIKLLDDAIGIESGTITTIHSAMN-DQQVIDAYHHDL------------RR-TRAASQSIIPVDTK------- 211 (325)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEhhcC-Cccccccchhhc------------cc-cchHhhCeeeCCcc-------
Confidence 9999999999999999999999999999999 899999764322 22 33455 99998433
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~ 308 (376)
+..|++|+||.++++++.+++||||++||+.+++++++++++.||++++|+++
T Consensus 212 -----~a~a~~kilP~L~gkl~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a 264 (325)
T TIGR01532 212 -----LARGIERLFPEFAGRFEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREA 264 (325)
T ss_pred -----HHHHHHHhCcccCCeEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHh
Confidence 45568999998888999999999999999999999999999999999999974
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=305.78 Aligned_cols=297 Identities=14% Similarity=0.196 Sum_probs=217.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-C-------------CCc---eee-------ecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-------------AGK---QLS-------FQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~-------------~g~---~~~-------~~~~~~~v~-~ 93 (376)
++||||+|+ |++|+.++|.+.++ ++++++++.+.. . -|+ .+. .+++.+.+. +
T Consensus 2 ~~ki~INGf-GRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~ 78 (337)
T PTZ00023 2 VVKLGINGF-GRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFE 78 (337)
T ss_pred ceEEEEECc-ChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeC
Confidence 479999999 99999999998876 889999997521 1 111 111 123445553 3
Q ss_pred cCccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 94 LTEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 94 ~~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
-+|.+ | .++|+||+|+|.+.++++++.++++|+++||+|+ ++++++|+++||+|++.++. ..+|||||
T Consensus 79 ~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSa--p~~~~vp~vV~gVN~~~~~~------~~~IISna 150 (337)
T PTZ00023 79 KDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSA--PPKDDTPIYVMGVNHTQYDK------SQRIVSNA 150 (337)
T ss_pred CChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCC--CCCCCCCeEEcccCHHHhCC------CCCEEECC
Confidence 34444 5 3899999999999999999999999999999999 46777899999999999974 46799999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCC--CcccccccccccccccCCCCcCC
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPP--TCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~--~~~~~~~~~a~niiph~~~~~e~ 247 (376)
+|+|+|++++|+||+++|+|+++.++|+|++|.... . +.|.+. ...+++|+.++|+||+.++.
T Consensus 151 sCTTn~Lap~lk~L~~~fgI~~~~~TT~ha~T~~Q~-l-----------ld~~~~~~kd~r~~r~~a~NiIP~~tGa--- 215 (337)
T PTZ00023 151 SCTTNCLAPLAKVVNDKFGIVEGLMTTVHASTANQL-T-----------VDGPSKGGKDWRAGRCAGVNIIPASTGA--- 215 (337)
T ss_pred ccHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCCce-e-----------cCCcCcccCCCcccceeeccccccCCCc---
Confidence 999999999999999999999999999999995422 2 223221 23478899999999998763
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCc
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPT 324 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~ 324 (376)
++ |+.+++|..+++++.+++|||+++||+.+++++++++++.||++++|+++. .-.++...++ |-
T Consensus 216 --ak-------av~kVlPeL~gkl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~---~~ 283 (337)
T PTZ00023 216 --AK-------AVGKVIPELNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDD---EV 283 (337)
T ss_pred --ch-------hhhheecccCCcEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCC---Ce
Confidence 32 457788988888999999999999999999999999999999999999742 2222221110 11
Q ss_pred c-ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 325 P-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 325 ~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
. .+..|...-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.+..|
T Consensus 284 VS~D~~~~~~s~i~d~~~t~v-~~~~~~k~~~WyDN-E~gys~r~~d~~~~~ 333 (337)
T PTZ00023 284 VSSDFVHDKRSSIFDVKAGIA-LNDTFVKLVSWYDN-EWGYSNRLLDLAHYI 333 (337)
T ss_pred eeeecCCCCCCeEEEcccCeE-ecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 1 1233333211100000000 11256888888999 677776666655543
|
|
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=304.74 Aligned_cols=235 Identities=19% Similarity=0.236 Sum_probs=193.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CC----------c-eeeecCc-ceEEe---
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------K-QLSFQDK-AYTVE--- 92 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g----------~-~~~~~~~-~~~v~--- 92 (376)
||||+|+ |++|+.++|.+.++..+.++++++.+... .| . .+.++++ .+.+.
T Consensus 1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 6999999 99999999998765213699998875311 11 1 1333444 55554
Q ss_pred ecCccCCC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 93 ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 93 ~~~~~~~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++...|. ++|+||+|+|.+.++++++.++++|+++||+|++ |+++ +|+++||+|++.++. ..+|||||+
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap-~~d~-~plvV~gVN~~~~~~------~~~IISn~s 151 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP-SKGD-APTIVYGVNHDEYDP------EERIISNAS 151 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC-CCCC-CCeecCCCCHHHhCC------CCCEEecCC
Confidence 33344576 8999999999999999999999999999999998 7765 899999999999973 467999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|++++|+||++.|+|+++.+||+|++||.++ .++ +.+ .+.+++++.++|+||+.++. .
T Consensus 152 CtTn~Lap~lk~L~~~fgI~~~~~TTiha~t~~q~-lld-----------~~~-~d~r~~r~~a~NiIP~~tg~-----a 213 (327)
T TIGR01534 152 CTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQN-LVD-----------GPH-KDLRRARAAALNIIPTSTGA-----A 213 (327)
T ss_pred chHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccc-ccc-----------CCC-CCCcCceEeEeeeeccCCCh-----H
Confidence 99999999999999999999999999999999743 222 221 23478899999999998662 2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP 309 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~ 309 (376)
.++.+++|..+.+++.+|+||||++||+.+++++++++++.+|++++|++++
T Consensus 214 -------k~~~kvlP~L~gkv~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~ 265 (327)
T TIGR01534 214 -------KAIGKVLPELAGKLTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAA 265 (327)
T ss_pred -------HHHhhccccCCCeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhh
Confidence 3468889888888999999999999999999999999999999999999753
|
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. |
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=299.34 Aligned_cols=300 Identities=16% Similarity=0.213 Sum_probs=223.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CCc----------eeeecCcceEEee-c
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AGK----------QLSFQDKAYTVEE-L 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g~----------~~~~~~~~~~v~~-~ 94 (376)
++||||+|+ |++|+.++|.+.++..+.++++++.+... .|+ .+..+++.+.+.. .
T Consensus 1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 379999999 99999999987765224799999875321 111 1222345566653 5
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+|++ |. ++|+||+|+|.+.++++++.++++|+++||+|+. +.++++|+++||+|++.+... ..++||||+
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~d~p~vV~gVN~~~~~~~-----~~~IISnas 153 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP-GKGEDIGTYVVGVNHHEYDHE-----DHNIISNAS 153 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC-CCCCCCceEecccCHHHhccC-----CCCEEECCc
Confidence 5544 65 8999999999999999999999999999999995 777678999999999999731 367999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+++|++++|+||+++|+|+++.+||+|++|+.| +.+|.. + .+.+++|..++|+||+.++. .
T Consensus 154 CTTn~Lap~lkvL~~~fgI~~~~mTTiha~T~~q-~~~D~~-------~-----~d~r~~raaa~NiIPt~tGa-----a 215 (337)
T PRK07403 154 CTTNCLAPIAKVLHDNFGIIKGTMTTTHSYTGDQ-RILDAS-------H-----RDLRRARAAAVNIVPTSTGA-----A 215 (337)
T ss_pred HHHHHHHHHHHHHHHhcCeeEEEEEEEeeecCCc-cccccc-------c-----cccccccccccccccCCcch-----h
Confidence 9999999999999999999999999999999997 556642 2 25578899999999998873 2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCcc-c
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPTP-L 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~~-~ 326 (376)
+ ++.+++|..+++++.+++|||+..||+.+++++++++++.||++++|+++. .--++...++ |-. .
T Consensus 216 k-------av~~vlP~L~gki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~---~~VS~ 285 (337)
T PRK07403 216 K-------AVALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDL---PLVSS 285 (337)
T ss_pred h-------hhhhcCcccCCcEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecC---CEeee
Confidence 2 245789988889999999999999999999999999999999999999852 1112211110 111 1
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+..|...-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.++.|
T Consensus 286 D~~~~~~s~i~D~~~t~v-~~~~~~k~~~WyDN-E~Gys~r~~dl~~~~ 332 (337)
T PRK07403 286 DYRGTDASSIVDASLTMV-MGGDMVKVIAWYDN-EWGYSQRVVDLAELV 332 (337)
T ss_pred eecCCCCCEEEEcccCEE-ecCCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 233332222210100000 11245778888999 677777766666543
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=305.27 Aligned_cols=292 Identities=14% Similarity=0.204 Sum_probs=216.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------------Cc-----------eeeecCcceEEe--
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------------GK-----------QLSFQDKAYTVE-- 92 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------------g~-----------~~~~~~~~~~v~-- 92 (376)
+||||+|+ |++|+.++|.+.++ ++++++++.++... |+ .+.++++.+.+.
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~ 162 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSK 162 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEec
Confidence 69999999 99999999988765 67999998763211 11 122234556665
Q ss_pred -ecCccCCC--CCcEEEEcCCCchhhhhHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEE
Q 017153 93 -ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIA 167 (376)
Q Consensus 93 -~~~~~~~~--~~DvVf~a~~~~~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa 167 (376)
+++...|. ++|+||+|+|.+.++++++.++++|+ .|||+++ +++|+++||+|++.++. ..+|||
T Consensus 163 ~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~-----~dvPlvV~gVN~~~l~~------~~~IIS 231 (421)
T PLN02272 163 RDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP------NMNIVS 231 (421)
T ss_pred CCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC-----CCCCeEEeccCHHHhCC------CCCeee
Confidence 33344576 89999999999999999999999999 7888873 36789999999999974 467999
Q ss_pred cCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 168 ~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||+|+|+|++++|+||+++|+|+++.++|+|++||. ++.+| +.+.++.+++++.++|+||+.++.
T Consensus 232 naSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~t-Q~llD-----------~~~~~d~r~~R~aa~NIIPt~tGa--- 296 (421)
T PLN02272 232 NASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTAT-QKTVD-----------GPSMKDWRGGRGASQNIIPSSTGA--- 296 (421)
T ss_pred CCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccCc-ccccc-----------CccccccccCCCcccccccCCCcc---
Confidence 999999999999999999999999999999999996 43333 222236688999999999998773
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCc
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPT 324 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~ 324 (376)
. .|+.|+||.++++++.+|+||||++||+.+++++++++++.||++++|++++ .-.++...++ |-
T Consensus 297 --a-------kav~kVLP~L~gkl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~---~l 364 (421)
T PLN02272 297 --A-------KAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDE---DV 364 (421)
T ss_pred --c-------hhhhhcccccCCcEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccC---CE
Confidence 2 1468899988888999999999999999999999999999999999999753 2223322110 11
Q ss_pred c-ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 P-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. .+..|..+-.|=-...-.. -+++-+.+++--|| -+|=+-+-+-.+..
T Consensus 365 VS~Df~~~~~ssi~D~~~t~~-~~~~~vKv~~WYDN-EwGys~R~~dl~~~ 413 (421)
T PLN02272 365 VSNDFVGDSRSSIFDAKAGIG-LSASFMKLVSWYDN-EWGYSNRVLDLIEH 413 (421)
T ss_pred eeeecCCCCCcEEEEcccCeE-ecCCEEEEEEEecC-chhHHHHHHHHHHH
Confidence 1 1333333322210000000 01256888899999 56666666555543
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=288.56 Aligned_cols=296 Identities=15% Similarity=0.194 Sum_probs=218.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CC----------ceeeecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------KQLSFQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g----------~~~~~~~~~~~v~-~~ 94 (376)
++||||+|+ |++|+.++|.+.++ ++++++++.+... .| +.+.++++.+.+. +-
T Consensus 2 ~~ki~INGf-GRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~ 78 (343)
T PRK07729 2 KTKVAINGF-GRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNR 78 (343)
T ss_pred ceEEEEECc-ChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence 479999999 99999999998776 8899999975311 11 1222244556664 22
Q ss_pred Ccc--CC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TED--SF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~--~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++ .| .++|+||+|+|.+.++++++.++++||++||+|+. |.+++.|+ +||+|++.++.. ..++||||+
T Consensus 79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~d~~l-V~gVN~~~~~~~-----~~~IISnaS 151 (343)
T PRK07729 79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP-GKNEDVTI-VVGVNEDQLDIE-----KHTIISNAS 151 (343)
T ss_pred ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC-CCCCCCcE-EecccHHHhccC-----CCCEEECCc
Confidence 333 46 58999999999999999999999999999999966 87767777 779999999731 367999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|++++|+||+++|+|+++.+||+|++||. ++.+|+++. ..+++|..+.|++|..++.+
T Consensus 152 CTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~-Q~~~D~~~~------------d~rr~R~a~~niiPtstgaa----- 213 (343)
T PRK07729 152 CTTNCLAPVVKVLDEQFGIENGLMTTVHAYTND-QKNIDNPHK------------DLRRARACGQSIIPTTTGAA----- 213 (343)
T ss_pred hHHHHHHHHHHHHHHhcCeeEEEEEEEecccCc-ccccccchh------------hhhcccccccceecCCCcch-----
Confidence 999999999999999999999999999999996 777875421 22445778999999776632
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEEeeCCCCCCCCcc-c
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVVIDDRASNHFPTP-L 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~~-~ 326 (376)
+. +.+++|..+++++.+++|||+++||+.+++++++++++.||++++|++++ .--++...++ |-. .
T Consensus 214 ----~a---i~~viP~l~gkl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~---~~VS~ 283 (343)
T PRK07729 214 ----KA---LAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEE---PLVSI 283 (343)
T ss_pred ----hh---HHHhccccCCeEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCC---Ccccc
Confidence 22 46889999999999999999999999999999999999999999999853 2223322111 111 1
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+..|..+-.|--...-.. -+++-+.+++--|| -+|=|-+-+-.+..
T Consensus 284 D~~~~~~s~i~D~~~t~v-~~~~~~K~~~WYDN-E~Gys~r~~dl~~~ 329 (343)
T PRK07729 284 DFNTNTHSAIIDGLSTMV-MGDRKVKVLAWYDN-EWGYSCRVVDLVTL 329 (343)
T ss_pred ccCCCCcceEEEcccCeE-ecCCEEEEEEEecC-chHHHHHHHHHHHH
Confidence 333333222210000000 12256888888999 56655555554443
|
|
| >PLN02237 glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=290.43 Aligned_cols=295 Identities=15% Similarity=0.191 Sum_probs=222.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CC-----------ceeeecCcceEEee
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG-----------KQLSFQDKAYTVEE 93 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g-----------~~~~~~~~~~~v~~ 93 (376)
+++||||+|+ |++|+.++|.+.++.++.++++++.+... .| +.+.++++.+.+..
T Consensus 74 ~~ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~ 152 (442)
T PLN02237 74 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVS 152 (442)
T ss_pred ceEEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEE
Confidence 4689999999 99999999987654236799999875311 11 11222445666654
Q ss_pred c-Cc--cCC--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 94 L-TE--DSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 94 ~-~~--~~~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
. +| ..| .++|+||+|+|.+.++++++.++++|+++||+| ++|.++++|+++||+|++.++.. ..+||||
T Consensus 153 ~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~dvptvV~GVN~~~~~~~-----~~~IISn 226 (442)
T PLN02237 153 NRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEDDYDHE-----VANIVSN 226 (442)
T ss_pred cCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCCCCceEecccCHHHhCcC-----CCCEEEC
Confidence 4 43 347 589999999999999999999999999999999 66877678999999999999731 2679999
Q ss_pred CCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
|+|+++|++++|+||+++|+|+++.+||+|++|+.. ..+|. .| .+.+.+|..+.||||..++..
T Consensus 227 aSCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ-~~~D~-------~h-----~D~Rr~Raaa~nIIPtsTGAA--- 290 (442)
T PLN02237 227 ASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQ-RLLDA-------SH-----RDLRRARAAALNIVPTSTGAA--- 290 (442)
T ss_pred CchHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCCc-ccccC-------CC-----cccccccccccccccCCcchh---
Confidence 999999999999999999999999999999999984 44552 11 256788999999999988842
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCC-CCCHHHHHHHHHhCC---CcEEeeCCCCCCCCc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEK-PLDEDTARDILKNAP---GVVVIDDRASNHFPT 324 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~-~~s~~ei~~~~~~~~---~v~v~~~~~~~~~p~ 324 (376)
|. +.+++|.+++++.+.++|||+..|.+.++++++++ +++.|||+++|+++. .--++...++ |-
T Consensus 291 ------kA---v~~VlP~L~GKl~g~A~RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~---pl 358 (442)
T PLN02237 291 ------KA---VSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDV---PL 358 (442)
T ss_pred ------hh---hceecccCCCceeeEEEecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCC---ce
Confidence 33 57889999999999999999999999999999998 799999999999852 1122221110 21
Q ss_pred c-ccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 P-LEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~-~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. .+..|...-.| +... +++-+.+++--|| -+|=+-+-+-.++.
T Consensus 359 VS~Df~~~~~Ssi~D~~~t~v~------~~~~vKv~aWYDN-EwGys~R~~dl~~~ 407 (442)
T PLN02237 359 VSVDFRCSDVSSTIDASLTMVM------GDDMVKVVAWYDN-EWGYSQRVVDLAHL 407 (442)
T ss_pred eeeeecCCCcceEEEcccCEEe------CCCEEEEEEEeCC-chhHHHHHHHHHHH
Confidence 1 13334333333 1111 1255778888999 66766666655544
|
|
| >PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=272.82 Aligned_cols=179 Identities=38% Similarity=0.598 Sum_probs=161.8
Q ss_pred HhHHHHh-CCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC--chHHHHHH
Q 017153 180 ATPLHRR-AKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG--YNEEEMKM 256 (376)
Q Consensus 180 L~pL~~~-~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g--~~~ee~k~ 256 (376)
|+||+++ +++++|+|++|||+||||++|+++|++|+..++++++.....+..++++|++||..++.+.+ +++||++.
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 7899998 88899999999999999999999999999999999988888999999999999998877888 89999999
Q ss_pred HHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeC-CCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccC-CCce
Q 017153 257 VKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFE-KPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSN-KDDV 334 (376)
Q Consensus 257 ~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~-~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g-~~~v 334 (376)
..|.+++++... .+++|||||||+|||++++|++++ ++.+.++++++|.+.|++.|...+ ++.+|+|+++.| +|+|
T Consensus 81 ~~~~~~~l~~~~-~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~P~~~~v~g~~n~~ 158 (184)
T PF02774_consen 81 IAETRKILGFPP-RVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKGPEPFVRVDP-EGDYPTPKDVVGGTNFV 158 (184)
T ss_dssp HHHHHHHCTETT-EEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTSTTEEEEESS-HTHHSSHHHHTTTSSSE
T ss_pred hccccceeeccc-cccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCCCCcEEEEcC-CCCccccHhhccCCCeE
Confidence 999999998655 999999999999999999999995 888999999999987677666543 356899999999 9999
Q ss_pred EEEEEEeccCCCCCCeEEEEEEechHHh
Q 017153 335 AVGRIRRDVSQDGNHGLDIFVCGDQVRK 362 (376)
Q Consensus 335 ~vg~~~~~~~~~~~~~~~~~~~~DNL~k 362 (376)
+|||+|.|.. .++.+++|+++|||+|
T Consensus 159 ~Vgrvr~d~~--~~~~l~~~~~~DNL~K 184 (184)
T PF02774_consen 159 DVGRVRVDPR--DPRGLVVWSVIDNLRK 184 (184)
T ss_dssp EEEEEEEETT--TTTEEEEEEEEETTTT
T ss_pred EEEEEEECCC--CCCEEEEEEEEccccC
Confidence 9999998753 2357999999999998
|
It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A .... |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=270.56 Aligned_cols=241 Identities=17% Similarity=0.274 Sum_probs=182.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---------Cceee---------ecCcceEEeecCccCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLS---------FQDKAYTVEELTEDSFD 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---------g~~~~---------~~~~~~~v~~~~~~~~~ 100 (376)
++||||+|+ |.+|+.+++.+.++ |+++++++.+.+.. |..+. +.+..+.+.....+.+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~--~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQ--PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcC--CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 489999999 99999999999887 99999998864321 11100 11122334322222346
Q ss_pred CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHH
Q 017153 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (376)
Q Consensus 101 ~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L 180 (376)
++|+||+|+|.+.+.++++.++++|++|||.++.++..+++++ +||+|++.+. +..+|+||||+||+++++|
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~~~~~-v~~vN~~~~~-------~~~~v~~~sCtT~~l~~~l 149 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVAGVSF-NALANYEEAL-------GKDYVRVVSCNTTGLCRTL 149 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCCCCcE-EeeECHHHhC-------CCCcEEccChHHHHHHHHH
Confidence 8999999999999999999999999999999998876556666 9999999886 3348999999999999999
Q ss_pred hHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHH
Q 017153 181 TPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKET 260 (376)
Q Consensus 181 ~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~ 260 (376)
+||++.|||+++.+||+|++|+-+ +++ +....|++|....++. ... .++
T Consensus 150 ~~L~~~fgI~~~~vTtv~a~td~~---------~~~--------------r~~~~niip~p~~~~~--~~g------~~v 198 (341)
T PRK04207 150 CALDRAFGVKKVRATLVRRAADPK---------EVK--------------RGPINAIVPDPVTVPS--HHG------PDV 198 (341)
T ss_pred HHHHHhcCceEEEEEEEEcCCCcc---------hhh--------------HHHhcCcCCCCCCCCC--Cch------hHH
Confidence 999999999999999999988531 110 1112334432111000 000 136
Q ss_pred HHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcc
Q 017153 261 RKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP 325 (376)
Q Consensus 261 ~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~ 325 (376)
+++++. ++++.+|+|||+++||+.+++++|+++++.+|++++|++++.+.++++. ...|+|
T Consensus 199 ~~vlp~--l~i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~--~~~~s~ 259 (341)
T PRK04207 199 KTVLPD--LDITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRAS--DGIDST 259 (341)
T ss_pred HhhCCC--CceEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccc--cCCCCh
Confidence 778865 4599999999999999999999999999999999999999999999653 234554
|
|
| >PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=257.46 Aligned_cols=289 Identities=13% Similarity=0.091 Sum_probs=203.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--------------CCCc----eeee-------cC-cceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--------------SAGK----QLSF-------QD-KAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--------------~~g~----~~~~-------~~-~~~~v~ 92 (376)
++||||+|+ |++|+.++|.+.++ +.++++++.+.. ..|+ .+.. ++ +.+.+.
T Consensus 2 ~~kv~INGf-GRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~ 78 (342)
T PTZ00353 2 PITVGINGF-GPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVS 78 (342)
T ss_pred CeEEEEECC-ChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEE
Confidence 479999999 99999999998776 889999997521 1122 1211 23 345543
Q ss_pred -ecCcc--CCC--CCcEEEEcCCCchhhhhHHHHHhCC---CeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCc
Q 017153 93 -ELTED--SFD--GVDIALFSAGGSISKKFGPIAVEKG---SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGA 164 (376)
Q Consensus 93 -~~~~~--~~~--~~DvVf~a~~~~~s~~~~~~~~~~G---~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~ 164 (376)
+-+++ .|. ++|+||+|+|.+.+.+.+..++++| +.|+|.| +++|+++||+|++.++. ..+
T Consensus 79 ~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps------~d~p~vV~gVN~~~~~~------~~~ 146 (342)
T PTZ00353 79 AKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQS------ADAPTVMAGSNDERLSA------SLP 146 (342)
T ss_pred ecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCC------CCCCeEEecCChHHcCC------CCC
Confidence 33333 476 9999999999996666666666555 4455554 34799999999999974 367
Q ss_pred EEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEE---ccccccCh-HhHHHHHHHhhhhhcCCCCCccccccccccccccc
Q 017153 165 LIANPNCSTIICLMAATPLHRRAKVTRMVVSTY---QAASGAGA-AAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH 240 (376)
Q Consensus 165 iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~---~gvSGaGr-~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph 240 (376)
+||||+|+|+|++++++||+++|+|+++.+||+ |..|+.|. .++++ ..+..|..+.|++|.
T Consensus 147 IISnaSCTTn~LapvlkvL~~~fGI~~g~mTTvHs~q~~~~~d~~~~~~~---------------d~rr~RaA~~nIiPt 211 (342)
T PTZ00353 147 VCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGMQPQEPIAARSKNSQ---------------DWRQTRVAIDAIAPY 211 (342)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCeeEEEeeeeeecceeecCCCcccccc---------------cccccchHHhCCccc
Confidence 999999999999999999999999999999999 66666655 33332 224456667788997
Q ss_pred CCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCC
Q 017153 241 NAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDR 317 (376)
Q Consensus 241 ~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~ 317 (376)
.++. ..|+.|++|.++++++.+++|||+++|++.+++++++++++.||++++|+++ +.-.++...
T Consensus 212 stga------------akav~kVlP~L~gkl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~ 279 (342)
T PTZ00353 212 RDNG------------AETVCKLLPHLVGRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCIS 279 (342)
T ss_pred CCcc------------hhhhhhhccccCCcEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEec
Confidence 6652 1457899998888999999999999999999999999999999999999974 222233221
Q ss_pred CCCCCCcc-ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 318 ASNHFPTP-LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 318 ~~~~~p~~-~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
++ |-. .+..|...+ |--...-....+++-+.+++--|| -+|=|-+-+-.+..
T Consensus 280 ~~---~~VS~Df~~~~~s-i~D~~~t~~~~~~~~vKv~~WYDN-E~Gys~r~~dl~~~ 332 (342)
T PTZ00353 280 KR---DMISVDCIPNGKL-CYDATSSSSSREGEVHKMVLWFDV-ECYYAARLLSLVKQ 332 (342)
T ss_pred CC---CeeeeEeCCCCCe-EEEcccCeEEeCCCEEEEEEEecC-chHHHHHHHHHHHH
Confidence 11 211 133443332 211110000002256888888999 67777766665554
|
|
| >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=259.81 Aligned_cols=298 Identities=13% Similarity=0.200 Sum_probs=220.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC--CCCeEEEEEecCCC-C----------------Cc---eee---------ecC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKRS-A----------------GK---QLS---------FQD 86 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~--~p~~~l~~v~s~~~-~----------------g~---~~~---------~~~ 86 (376)
++.||+|.|+ |++|+.++|++.++. .+.++++++..+.. . |+ .+. .++
T Consensus 126 ~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing 204 (477)
T PRK08289 126 EPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANG 204 (477)
T ss_pred CCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECC
Confidence 3579999999 999999999987641 14799999853211 0 11 011 022
Q ss_pred cceEEe-ecCccC--CC--CCc--EEEEcCCCchhhhhHHHHHh-CCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCccc
Q 017153 87 KAYTVE-ELTEDS--FD--GVD--IALFSAGGSISKKFGPIAVE-KGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158 (376)
Q Consensus 87 ~~~~v~-~~~~~~--~~--~~D--vVf~a~~~~~s~~~~~~~~~-~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~ 158 (376)
+.+.+. +-+|++ |. ++| +|++|+|.+...+.+..+++ +|++-|-+|++. ++++|.++|++|++.+..
T Consensus 205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~--k~d~p~iV~GVN~~~~~~--- 279 (477)
T PRK08289 205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPG--KGDIKNIVHGVNHSDITD--- 279 (477)
T ss_pred EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCC--CCCCCeEEcccCHHHhCC---
Confidence 334443 334443 53 899 99999999999998888888 898877789884 456799999999999973
Q ss_pred CCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccccc
Q 017153 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLF 238 (376)
Q Consensus 159 ~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~nii 238 (376)
..+|||||+|+|+|++++|+||+++|||++..++|+|++|+ |+.++|+++ . ..+++|+.++|+|
T Consensus 280 ---~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~-dQ~lvD~~h-------k-----d~RrgRaaa~NII 343 (477)
T PRK08289 280 ---EDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTN-DQNLIDNYH-------K-----GDRRGRSAPLNMV 343 (477)
T ss_pred ---CCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccC-ChHHhhhhh-------h-----cCcccceeeeeeE
Confidence 46799999999999999999999999999999999999999 799999642 1 3588899999999
Q ss_pred ccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC----CcEEe
Q 017153 239 SHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP----GVVVI 314 (376)
Q Consensus 239 ph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~----~v~v~ 314 (376)
|..++.. .++.++||.++++++.+++|||+++|++.+++++++++++.||++++|+++. .-.++
T Consensus 344 ptsTGAA------------kAv~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil 411 (477)
T PRK08289 344 ITETGAA------------KAVAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQI 411 (477)
T ss_pred ecCCChh------------hhhhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCcccee
Confidence 9877632 2468899999999999999999999999999999999999999999999842 22233
Q ss_pred eCCCCCCCCccc--cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 315 DDRASNHFPTPL--EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 315 ~~~~~~~~p~~~--~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+...+ |..+ +..|+..-.|=-...-.. . ++.+.+++--|| -+|=+-|-+-.++.|
T Consensus 412 ~yt~~---~~lVSsDfig~~~SsI~D~~~T~v-~-g~~vkv~~WYDN-E~GYS~rvvdl~~~~ 468 (477)
T PRK08289 412 DYTDS---TEVVSSDFVGSRHAGVVDSQATIV-N-GNRAVLYVWYDN-EFGYSCQVVRVMEQM 468 (477)
T ss_pred eeccc---CCeeeeeecCCCchhheehhccEE-c-CCEEEEEEEecC-chhHHHHHHHHHHHH
Confidence 22111 1111 223333222210000000 1 256888888999 678887777776654
|
|
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=236.98 Aligned_cols=301 Identities=13% Similarity=0.144 Sum_probs=216.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC--CCCeEEEEEecCC-C-------------CCc---eee---------------
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKR-S-------------AGK---QLS--------------- 83 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~--~p~~~l~~v~s~~-~-------------~g~---~~~--------------- 83 (376)
|++||||+|+ |++||.++|.+.+++ .+.++++++.++. . .|+ .+.
T Consensus 2 m~ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 4589999999 999999999877641 1579999997631 1 121 111
Q ss_pred ecCcceEE--eecCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcc
Q 017153 84 FQDKAYTV--EELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157 (376)
Q Consensus 84 ~~~~~~~v--~~~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~ 157 (376)
.+++.+.+ .+-+|.+ |. ++|+|++|+|.+.+++.+..++++|+|-|-+|++. +++.+..+.++|++.++..
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~--~d~~~t~V~GVN~~~y~~~- 157 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPA--SGGAKTIVMGVNQHEYSPT- 157 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCC--CCCCceEEEcCChHHcCcc-
Confidence 12334443 3334554 53 89999999999999999999999999877788874 3334789999999999731
Q ss_pred cCCCCCcEEEcCCchHHHHHHHHhHH-HHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccc
Q 017153 158 VGMGKGALIANPNCSTIICLMAATPL-HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFN 236 (376)
Q Consensus 158 ~~~~~~~iVa~PgC~~ta~~l~L~pL-~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~n 236 (376)
..++|||.+|+|+|+++.++.| +++|||++..+||+|++++. ++.+|. .+ -.+.+.+|..+.|
T Consensus 158 ----~~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~-Q~~~D~-------~~----~kD~Rr~Raaa~n 221 (361)
T PTZ00434 158 ----EHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTAT-QKTVDG-------VS----VKDWRGGRAAAVN 221 (361)
T ss_pred ----cCcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCC-cccccC-------cC----ccccccccccccc
Confidence 2579999999999999999999 79999999999999999998 444552 11 1256788999999
Q ss_pred ccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC---CcEE
Q 017153 237 LFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP---GVVV 313 (376)
Q Consensus 237 iiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~---~v~v 313 (376)
+||..++.+ |+ +.+++|.+++++...++|||+..|.+.+++++++++++.|||+++|+++. .--+
T Consensus 222 IIPtsTGAA---------kA---v~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgI 289 (361)
T PTZ00434 222 IIPSTTGAA---------KA---VGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGI 289 (361)
T ss_pred CccCCcchh---------hh---hceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCc
Confidence 999988842 33 57899999999999999999999999999999999999999999999852 2222
Q ss_pred eeCCCCCCCCcc-ccccCCCceEEEEEEeccCCC--C-CCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 314 IDDRASNHFPTP-LEVSNKDDVAVGRIRRDVSQD--G-NHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 314 ~~~~~~~~~p~~-~~v~g~~~v~vg~~~~~~~~~--~-~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+...++ |-. .+..|..+-.|--...-.... + ++-+.+++--|| -+|=|-+-+-.+..
T Consensus 290 l~y~~~---plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDN-EwGys~Rl~dl~~~ 350 (361)
T PTZ00434 290 LGFTDD---ELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDN-EWGYSHRVVDLVRY 350 (361)
T ss_pred ccccCC---CccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecC-chHHHHHHHHHHHH
Confidence 221110 111 133333332221000000000 1 256888999999 66766666655543
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=230.86 Aligned_cols=236 Identities=18% Similarity=0.210 Sum_probs=192.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCC-------------CCc----------eeeecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRS-------------AGK----------QLSFQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~-------------~g~----------~~~~~~~~~~v~-~ 93 (376)
++||||+|+ |++|+.++|++.++ + ++|++++..... .|. .+.+++..+.+. .
T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~--~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAINGF-GRIGRLVARAALER--DGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAE 77 (335)
T ss_pred CcEEEEecC-cHHHHHHHHHHHhC--CCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEec
Confidence 489999999 99999999999988 7 799999975211 111 122234456665 3
Q ss_pred cCccC--C--CCCcEEEEcCCCchhhhhHHHHHhC-CCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 94 LTEDS--F--DGVDIALFSAGGSISKKFGPIAVEK-GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 94 ~~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~-G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
.+|+. | .++|+|++|+|.+.+++.+++++++ |+|.|-.|++- .++++.++.++|++.+.. +..+|||
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~--~~~~~~vv~gvn~~~~~~------~~~iVsn 149 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG--KDDVATVVYGVNHNYYDA------GHTIVSN 149 (335)
T ss_pred CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC--CCCccEEEEeccccccCC------CCcEEEE
Confidence 34444 3 2678999999999999999998887 58877788875 334899999999999874 5789999
Q ss_pred CCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
.+|+|||+++.+++|.+.|||+++.+||+|++++..+ -.+. .| .+.++.|.++-|+||..++.+
T Consensus 150 aSCTTNcLap~~kvl~d~fGI~~g~mTtVh~~T~dQ~-~~dg-------ph-----~~~rr~raa~~niIp~sTgaA--- 213 (335)
T COG0057 150 ASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQK-LVDG-------PH-----KDLRRARAAALNIIPTSTGAA--- 213 (335)
T ss_pred ccchhhhhHHHHHHHHHhcCeeEEEEEEEEcccCCCc-cccC-------cc-----cchhhhccccCCCCcCCCcch---
Confidence 9999999999999999999999999999999999843 3442 12 246778899999999766632
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCC
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG 310 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~ 310 (376)
|. +.+++|.+++++...++|||+..+|+.+++++++++++.|||+++|++++-
T Consensus 214 ------ka---v~~VlP~L~gKl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~ 266 (335)
T COG0057 214 ------KA---VGLVLPELKGKLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASE 266 (335)
T ss_pred ------hh---hhhhCcccCCceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhc
Confidence 33 578899999999999999999999999999999999999999999998753
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=196.21 Aligned_cols=112 Identities=35% Similarity=0.539 Sum_probs=99.1
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecC------cceEEeecCccCCCCCcEEEEcCCCch
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQD------KAYTVEELTEDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~------~~~~v~~~~~~~~~~~DvVf~a~~~~~ 113 (376)
||+|+|||||+|++|+++|.+| |.++++.+.+++. .|+.+.+.. .++.+.+.+.+.+.++|+||+|+|++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH
Confidence 7999999999999999999997 9999998877766 999887642 356666656666789999999999999
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+++++++++++|++|||+|++||+++++||++||||+++++
T Consensus 79 ~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 79 SKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp HHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 99999999999999999999999999999999999999987
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=195.96 Aligned_cols=229 Identities=17% Similarity=0.237 Sum_probs=175.1
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---------Cceeeec---------CcceEEeecCccC-CCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLSFQ---------DKAYTVEELTEDS-FDGV 102 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---------g~~~~~~---------~~~~~v~~~~~~~-~~~~ 102 (376)
|||+|+ |++|+.++|.+.++ |+++++++++.+.. |...... ...+.+.. ++++ +.++
T Consensus 1 VaInG~-GrIGr~varav~~~--~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g-~~eeLl~~v 76 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQ--DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAG-TLEDLLEKV 76 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhC--CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecC-CHHHHhhcC
Confidence 699999 99999999998876 89999999863321 1000000 00122211 1222 3689
Q ss_pred cEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCC-CCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHh
Q 017153 103 DIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE-NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAAT 181 (376)
Q Consensus 103 DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~-~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~ 181 (376)
|+|+.|+|.+.....++.+.+.|++.|=.|+... + ..+..+.++|++.+. +..+|+|.+|+|||+++.++
T Consensus 77 DiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~--~~~~~tfv~gvN~~~~~-------~~~~vs~aSCtTn~Lap~~~ 147 (333)
T TIGR01546 77 DIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA--EVADVSFVAQANYEAAL-------GKDYVRVVSCNTTGLVRTLN 147 (333)
T ss_pred CEEEECCCCCCChhhHHHHHhCCcCEEEECCCCC--CCCCceEEeeeCHHHcC-------cCceEEecCchHhhHHHHHH
Confidence 9999999999999999999999999887888742 2 135799999999987 34499999999999999999
Q ss_pred HHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHH
Q 017153 182 PLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261 (376)
Q Consensus 182 pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~ 261 (376)
+|++.|||+++.+|++|. ++..+ | .+.++ +.|++|.-.++|. . . .+. +.
T Consensus 148 ~L~~~fGI~~~~~Ttvh~-t~dq~---d-----------------~rrgr--~~~IiP~~~t~ps---~-~-a~a---v~ 196 (333)
T TIGR01546 148 AINDYSKVDKVRAVMVRR-AADPN---D-----------------VKKGP--INAIVPDPVTVPS---H-H-GPD---VQ 196 (333)
T ss_pred HHHHhcCeEEEEEEEEee-cCChh---h-----------------hccCc--hhceEeCCCCCCC---c-h-HHH---HH
Confidence 999999999999999995 44421 1 12222 5889987322222 0 1 222 57
Q ss_pred HHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeC
Q 017153 262 KIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDD 316 (376)
Q Consensus 262 ~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~ 316 (376)
+++|.++ +...++|||+..+|+.+++++++++++.+|++++|+++|.|.+++.
T Consensus 197 ~VlP~L~--i~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~ri~~~~~ 249 (333)
T TIGR01546 197 TVIPNLN--IETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPRVLLFEK 249 (333)
T ss_pred HcCCCCC--ccEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCcEEEEec
Confidence 8888765 9999999999999999999999999999999999999999998854
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=183.49 Aligned_cols=225 Identities=17% Similarity=0.242 Sum_probs=162.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceeee-cCcceEEeecC----ccCCCCCcEEEEcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF-QDKAYTVEELT----EDSFDGVDIALFSAG 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~~-~~~~~~v~~~~----~~~~~~~DvVf~a~~ 110 (376)
+++||||+| +|.+|..++..+.+. |.++++++++.+. .|..... .+........+ ..+|.++|+||+|+|
T Consensus 3 ~klrVAIIG-tG~IGt~hm~~l~~~--~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~ 79 (302)
T PRK08300 3 SKLKVAIIG-SGNIGTDLMIKILRS--EHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATS 79 (302)
T ss_pred CCCeEEEEc-CcHHHHHHHHHHhcC--CCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCC
Confidence 469999999 699999999888776 8999999987643 2322111 11111111111 223578999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCc
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVT 190 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~ 190 (376)
+..+.++++++.++|+.|||+++.+ ..||++||+|.+++... .+.++|+||||.++.++++|+|+. ...+.
T Consensus 80 a~~H~e~a~~a~eaGk~VID~sPA~----~~PlvVP~VN~~~~~~~----~~~~iia~p~~ati~~v~Al~~v~-~~~~~ 150 (302)
T PRK08300 80 AGAHVRHAAKLREAGIRAIDLTPAA----IGPYCVPAVNLDEHLDA----PNVNMVTCGGQATIPIVAAVSRVA-PVHYA 150 (302)
T ss_pred HHHHHHHHHHHHHcCCeEEECCccc----cCCcccCcCCHHHHhcc----cCCCEEECccHHHHHHHHHhcccC-cCcee
Confidence 9999999999999999999999998 56999999999988642 146899999999999999999965 44666
Q ss_pred EEEEEEEcccc-ccC-hHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCC
Q 017153 191 RMVVSTYQAAS-GAG-AAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD 268 (376)
Q Consensus 191 ~v~v~t~~gvS-GaG-r~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~ 268 (376)
+++ .|+++.| |.| |..+||+.++|...+. +.++. +. .+
T Consensus 151 eIv-at~~s~s~g~gtr~nidE~~~~t~~~~~-------------------~~~g~-~~-------------------~k 190 (302)
T PRK08300 151 EIV-ASIASKSAGPGTRANIDEFTETTSRAIE-------------------KVGGA-AR-------------------GK 190 (302)
T ss_pred eee-eeehhhccCCcccccHHHHHHHHHHHHH-------------------HhcCc-cc-------------------ce
Confidence 777 8899999 999 8899999888876432 22221 10 01
Q ss_pred CcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh--------CCCcEEeeC
Q 017153 269 VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN--------APGVVVIDD 316 (376)
Q Consensus 269 ~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~--------~~~v~v~~~ 316 (376)
--+...|--=|+. +--|+|+..+.+.+.+.|++...+ -|+-|+...
T Consensus 191 ai~~~npa~p~~~--m~~tv~~~~~~~~~~~~i~~~~~~~~~~v~~yvpgy~l~~~ 244 (302)
T PRK08300 191 AIIILNPAEPPLI--MRDTVYCLVDEDADQDAIEASVHAMVAEVQAYVPGYRLKQE 244 (302)
T ss_pred EEEEecCCCCCcc--ceeeEEEeeCCCCCHHHHHHHHHHHHHHHHhhCCCEEeecc
Confidence 1133344333432 345777777766888888877765 288888644
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=157.93 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=128.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--CceeeecCcceEEeecCccC-C--CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~ 113 (376)
++||||+|+ |.+|+.++..+.+. +.++++++.+.+.. +...... ..+.....+.+. + .++|+||+|+|+..
T Consensus 1 klrVAIIG~-G~IG~~h~~~ll~~--~~~elvaV~d~d~es~~la~A~~-~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~ 76 (285)
T TIGR03215 1 KVKVAIIGS-GNIGTDLMYKLLRS--EHLEMVAMVGIDPESDGLARARE-LGVKTSAEGVDGLLANPDIDIVFDATSAKA 76 (285)
T ss_pred CcEEEEEeC-cHHHHHHHHHHHhC--CCcEEEEEEeCCcccHHHHHHHH-CCCCEEECCHHHHhcCCCCCEEEECCCcHH
Confidence 479999997 99999998777665 88999998865432 2111110 011111111122 2 47999999999999
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
+.+++.+++++|+.|||+++.+ ..||++|++|.+++... .+.++|+||+|.++.+..+|+++++...+ .+
T Consensus 77 H~e~a~~al~aGk~VIdekPa~----~~plvvp~VN~~~~~~~----~~~~iv~c~~~atip~~~al~r~~d~~~~--~i 146 (285)
T TIGR03215 77 HARHARLLAELGKIVIDLTPAA----IGPYVVPAVNLDEHLDA----PNVNMVTCGGQATIPIVAAISRVAPVHYA--EI 146 (285)
T ss_pred HHHHHHHHHHcCCEEEECCccc----cCCccCCCcCHHHHhcC----cCCCEEEcCcHHHHHHHHHHHHhhccccE--EE
Confidence 9999999999999999999998 56999999999887742 14689999999999999999999987644 56
Q ss_pred EEEEccccc-c-ChHhHHHHHHHhhhh
Q 017153 194 VSTYQAASG-A-GAAAMEELELQTREV 218 (376)
Q Consensus 194 v~t~~gvSG-a-Gr~~~~~l~~q~~~~ 218 (376)
++++++.|+ . ||.+++++.+||.+-
T Consensus 147 v~ti~s~S~g~g~r~~idel~~~t~~~ 173 (285)
T TIGR03215 147 VASIASRSAGPGTRANIDEFTETTSRA 173 (285)
T ss_pred EEEEEeeccCCCchhHHHHHHHHHHHH
Confidence 777999995 8 599999998887653
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=127.83 Aligned_cols=112 Identities=46% Similarity=0.667 Sum_probs=87.1
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec-CCCCCceeeecCcceE---EeecCccCC--CCCcEEEEcCCCchh
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS-KRSAGKQLSFQDKAYT---VEELTEDSF--DGVDIALFSAGGSIS 114 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s-~~~~g~~~~~~~~~~~---v~~~~~~~~--~~~DvVf~a~~~~~s 114 (376)
|++|+|++|++|..+++.|.++ |.+++.++.+ +++.|+.+.+.+..+. +...+.+.+ .++|+||+|+|.+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~ 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH
Confidence 6899999999999999999988 8899988844 4456665544322221 122333444 489999999999999
Q ss_pred hhhHHH---HHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 115 KKFGPI---AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 115 ~~~~~~---~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
.+.+.. ..+.|+.|||+|+++|++++++|++|++|+++++
T Consensus 79 ~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHhc
Confidence 886543 3478999999999999999999999999999875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-13 Score=116.57 Aligned_cols=121 Identities=20% Similarity=0.302 Sum_probs=90.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-----------------eee-------ecCcceEEe-ec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----------------QLS-------FQDKAYTVE-EL 94 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-----------------~~~-------~~~~~~~v~-~~ 94 (376)
+||||+|+ |++|+.++|.+..+ |+++++++.+....-+ .+. ..++.+.+. ..
T Consensus 1 ikVgINGf-GRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGF-GRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEEST-SHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTS
T ss_pred CEEEEECC-CcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhh
Confidence 58999999 99999999999987 9999999986541111 111 123334443 33
Q ss_pred CccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCC-CcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 95 TEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-VPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 95 ~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~-~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
+|++ | .++|+|++|+|.+.+++.++.++++|++-|-+|++. .++ .+..+.++|.+.+.. +.++||+.
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~--~~~~~~t~V~GvN~~~~~~------~~~iIS~a 149 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPS--KDDADPTFVMGVNHDDYDP------EHHIISNA 149 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS---SSSSSEEE-TTTSGGGGTT------TTSEEEE-
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeecccc--ccccCCeEEeeccHHHhCC------CCCEEEcc
Confidence 4554 4 489999999999999999999999999977788876 333 789999999999984 33899999
Q ss_pred Cc
Q 017153 170 NC 171 (376)
Q Consensus 170 gC 171 (376)
+|
T Consensus 150 SC 151 (151)
T PF00044_consen 150 SC 151 (151)
T ss_dssp -H
T ss_pred CC
Confidence 99
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-12 Score=118.83 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=145.7
Q ss_pred CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHH
Q 017153 100 DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~ 179 (376)
.++|++...++.+.+.+.+..+.+.|++.+-.|+.- .+.|..+.+||.+.+.. ...+|||.+|+++|+++.
T Consensus 73 ~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps---~dapmfv~gVn~~~y~~------~~~iiSnascttnclaPl 143 (285)
T KOG0657|consen 73 KGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPS---ADAPMFVMGVNGEKYDN------SLDIISNASCTTNCLAPL 143 (285)
T ss_pred ccceeEeeccccccccccccccccccceEEEecccc---CCCCccccccccccccc------ccceeechhhhhccccch
Confidence 488999999999999999998888898866666652 36899999999999985 345899999999999999
Q ss_pred HhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHH
Q 017153 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (376)
Q Consensus 180 L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e 259 (376)
.+.++++|+|.+-.++|.|+++.-.+. ++. ...+.++.++....|+||...+. .|+
T Consensus 144 aKVi~d~fgI~EgLMtTvha~tatQkt-vdg-----------ps~k~wr~g~~a~qNIiPASTgA---------akA--- 199 (285)
T KOG0657|consen 144 AKVIHDNFGIMEGLMTTVHAITATQKT-VDG-----------PSGKLWRDGRRALQNIIPASTGA---------AKA--- 199 (285)
T ss_pred hheeccccccccccccceeeecccccc-ccC-----------cccccccccchhhhccccccccH---------HHH---
Confidence 999999999999899999999987553 442 11234556666779999987773 244
Q ss_pred HHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC
Q 017153 260 TRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP 309 (376)
Q Consensus 260 ~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~ 309 (376)
..|+++.+..+++..+.+||+. ....+++++++++.+-|+++++++.+.
T Consensus 200 VgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvvk~~~ 248 (285)
T KOG0657|consen 200 VGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVVKLAS 248 (285)
T ss_pred HHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHHHHhh
Confidence 4777888888999999999999 899999999999999999999999853
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=101.71 Aligned_cols=121 Identities=20% Similarity=0.309 Sum_probs=89.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-------------Cc---eeee-------cCcceEEe-ecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLSF-------QDKAYTVE-ELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-------------g~---~~~~-------~~~~~~v~-~~~ 95 (376)
+||||+|+ |.+|+.+++.+.++ +.++++++.+.... |+ .+.. .++.+.+. .-+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCC
Confidence 58999999 99999999999877 89999988763111 11 0100 12223332 223
Q ss_pred ccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 96 EDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 96 ~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
+.+ | .++|+|++|+|...+++.++.++++|++-|-+|++. +++.+..+.++|++++.. +.++|||.+|
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~--~~~~~t~V~GvN~~~~~~------~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA--KDADKTFVYGVNHDEYDP------EDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC--CCCCceEEEeechHHcCC------CCCEEEcCCC
Confidence 332 4 489999999999999998889999999877788885 333458999999999974 3559999999
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.8e-10 Score=101.59 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=90.0
Q ss_pred HHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHH
Q 017153 176 CLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMK 255 (376)
Q Consensus 176 ~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k 255 (376)
+++.+++|+++|||+++.++++|+++... +.+|.. + .+.+.++..+.|++|..+.. .+
T Consensus 1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q-~~~D~~-------~-----~d~rrgr~a~~niip~~t~a---------a~ 58 (157)
T PF02800_consen 1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQ-KLVDGP-------H-----KDWRRGRAAAQNIIPTSTGA---------AK 58 (157)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTS-BSSSS--------------SSTGTTSBTTTSSEEEEESH---------HH
T ss_pred CcchhhhhhhhcCEEEEEEEEEeccCCcc-ceeeec-------c-----cccccccccccccccccccc---------ch
Confidence 57889999999999999999999999884 335421 1 25677788899999987662 12
Q ss_pred HHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC
Q 017153 256 MVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308 (376)
Q Consensus 256 ~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~ 308 (376)
. +.+++|.+++++...++|||+..||+.+++++++++++.|||+++|+++
T Consensus 59 a---v~~VlP~L~gki~g~a~rVPt~~~s~~dl~~~l~k~~t~eeV~~~~~~a 108 (157)
T PF02800_consen 59 A---VGKVLPELNGKITGMAVRVPTPNVSLHDLTVELEKPVTKEEVNEALKQA 108 (157)
T ss_dssp H---HHHHSGGGTTTEEEEEEEESSSSEEEEEEEEEESSSS-HHHHHHHHHHH
T ss_pred h---hhhhhhhccCcceeeEEeeeecccCceEEEEecccchhhhhhhhhhhhh
Confidence 2 5889998889999999999999999999999999999999999999984
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D .... |
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-09 Score=95.59 Aligned_cols=163 Identities=20% Similarity=0.271 Sum_probs=107.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec--CCCCCceeeec-CcceEEeec----CccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSFQ-DKAYTVEEL----TEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s--~~~~g~~~~~~-~~~~~v~~~----~~~~~~~~DvVf~a~~~ 111 (376)
|.||+|+|. |.+|..|+-.++.|+ .++|..+... +.+.|-..... +....-+.+ ...++.+.|+||.++..
T Consensus 4 k~kvaiigs-gni~tdlm~k~lr~g-~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa 81 (310)
T COG4569 4 KRKVAIIGS-GNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSA 81 (310)
T ss_pred cceEEEEcc-CcccHHHHHHHHhcC-CcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEecccc
Confidence 689999996 999999998777774 3567766553 33443211110 111111111 12245688999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcE
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTR 191 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~ 191 (376)
++..+.++++.++|++.|||+++. --||++|-+|-++-... .+.++|.|.|..+..+..+...+.+-. ..+
T Consensus 82 ~~h~~~a~~~ae~gi~~idltpaa----igp~vvp~~n~~eh~~a----~nvnmvtcggqatipiv~avsrvv~v~-yae 152 (310)
T COG4569 82 GAHVKNAAALAEAGIRLIDLTPAA----IGPYVVPVVNLEEHVDA----LNVNMVTCGGQATIPIVAAVSRVVRVH-YAE 152 (310)
T ss_pred chhhcchHhHHhcCCceeecchhc----cCCeeccccchHHhcCC----CCcceEeecCcccchhhhhhhhheehh-HHH
Confidence 999999999999999999999874 56999999997654421 267899999988888877766654311 112
Q ss_pred EEEEEEccccccC-hHhHHHHH
Q 017153 192 MVVSTYQAASGAG-AAAMEELE 212 (376)
Q Consensus 192 v~v~t~~gvSGaG-r~~~~~l~ 212 (376)
++.+..+-..|-| |.-+||+.
T Consensus 153 ivasias~sagpgtranideft 174 (310)
T COG4569 153 IVASIASKSAGPGTRANIDEFT 174 (310)
T ss_pred HHHHHhhccCCCCcccchHhhh
Confidence 3222223334555 44566653
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.6e-07 Score=76.25 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=66.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeee----cCcceEEeecCc-cCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF----QDKAYTVEELTE-DSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~----~~~~~~v~~~~~-~~~~~~DvVf~a~~~ 111 (376)
|||+|+|++|..|+.+++.+.++ +++++++...++. .|+.+.. ....+.+.. +. +.+..+|++++++-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~-~l~~~~~~~DVvIDfT~p 77 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTD-DLEELLEEADVVIDFTNP 77 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS--HHHHTTH-SEEEEES-H
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccccchhhhhhCcCCcccccch-hHHHhcccCCEEEEcCCh
Confidence 68999999999999999999998 9999998766554 4555432 111223321 22 224569999999988
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
....++++.+++.|+.+|--+.-|
T Consensus 78 ~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 78 DAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp HHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred HHhHHHHHHHHhCCCCEEEECCCC
Confidence 889999999999999988766544
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=75.79 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
+|||+|+|++|.+|+.+++.+.++ |+++++++.+++...... ....++... .+.+. +.++|+|+.+++.....++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~~~-~~~~~i~~~-~dl~~ll~~~DvVid~t~p~~~~~~ 76 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPLVG-QGALGVAIT-DDLEAVLADADVLIDFTTPEATLEN 76 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccc-cCCCCcccc-CCHHHhccCCCEEEECCCHHHHHHH
Confidence 389999999999999999999877 889999887654321110 010111111 11222 3579999999998888999
Q ss_pred HHHHHhCCCeEEEcCC
Q 017153 118 GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~ 133 (376)
+..++++|+.||.-+-
T Consensus 77 ~~~al~~G~~vvigtt 92 (257)
T PRK00048 77 LEFALEHGKPLVIGTT 92 (257)
T ss_pred HHHHHHcCCCEEEECC
Confidence 9999999999985443
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-06 Score=83.10 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEee-cCc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~-~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
++||+|+|. |.+|+..++.+.++ |+++++++.+++..++ .. ....+.. .+. +...++|+|+.|+|+....+
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~-~~---~~~~v~~~~d~~e~l~~iDVViIctPs~th~~ 75 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQ--PDMELVGVFSRRGAET-LD---TETPVYAVADDEKHLDDVDVLILCMGSATDIP 75 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhC--CCcEEEEEEcCCcHHH-Hh---hcCCccccCCHHHhccCCCEEEEcCCCccCHH
Confidence 699999998 99999999999887 9999999887664221 11 1112221 122 22368999999999999999
Q ss_pred hHHHHHhCCCeEEEc
Q 017153 117 FGPIAVEKGSIVVDN 131 (376)
Q Consensus 117 ~~~~~~~~G~~VIDl 131 (376)
.+.+++++|.-|||.
T Consensus 76 ~~~~~L~aG~NVV~s 90 (324)
T TIGR01921 76 EQAPYFAQFANTVDS 90 (324)
T ss_pred HHHHHHHcCCCEEEC
Confidence 999999999999986
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-06 Score=73.05 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=57.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.+||+|||+ |.+|..|.+.|.+.+ .++..+.+++....... .......+..+ .+.+..+|++|+|+|.+.-.+.
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag---~~v~~v~srs~~sa~~a~~~~~~~~~~~~-~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAG---HEVVGVYSRSPASAERAAAFIGAGAILDL-EEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTT---SEEEEESSCHH-HHHHHHC--TT-----T-TGGGCC-SEEEE-S-CCHHHHH
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCC---CeEEEEEeCCccccccccccccccccccc-ccccccCCEEEEEechHHHHHH
Confidence 699999999 999999999999864 47777877653222111 11111222221 2335789999999999999999
Q ss_pred HHHHHhC-----CCeEEEcCCCC
Q 017153 118 GPIAVEK-----GSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~-----G~~VIDlS~~~ 135 (376)
++.+... |..|+.+|+.+
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS-
T ss_pred HHHHHHhccCCCCcEEEECCCCC
Confidence 9988765 77899999886
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.3e-06 Score=78.66 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=64.4
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s 114 (376)
|+++||||+|. |.+|+.+++.|... .+.++++++.+++..- +.+.......... .+.++ +.++|+|+.|+|+...
T Consensus 4 m~~irIGIIG~-G~IG~~~a~~L~~~-~~~~el~aV~dr~~~~a~~~a~~~g~~~~~-~~~eell~~~D~Vvi~tp~~~h 80 (271)
T PRK13302 4 RPELRVAIAGL-GAIGKAIAQALDRG-LPGLTLSAVAVRDPQRHADFIWGLRRPPPV-VPLDQLATHADIVVEAAPASVL 80 (271)
T ss_pred CCeeEEEEECc-cHHHHHHHHHHHhc-CCCeEEEEEECCCHHHHHHHHHhcCCCccc-CCHHHHhcCCCEEEECCCcHHH
Confidence 44699999998 99999999988762 2788998887654211 1111100000111 12222 3678999999999999
Q ss_pred hhhHHHHHhCCCeEEEcC
Q 017153 115 KKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS 132 (376)
.++...++++|..||..|
T Consensus 81 ~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 81 RAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred HHHHHHHHHcCCcEEEec
Confidence 999999999999888765
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2e-05 Score=75.42 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=64.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecCccCC-CCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTEDSF-DGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~~~ 117 (376)
|||||+|+ |.+|+.+++.|.+. |.++++++..+......... ......+.. +.+++ .++|+|+.|+|+....++
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~-d~~~l~~~~DvVve~t~~~~~~e~ 77 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVRRALGEAVRVVS-SVDALPQRPDLVVECAGHAALKEH 77 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHhhhhccCCeeeC-CHHHhccCCCEEEECCCHHHHHHH
Confidence 79999999 99999999999887 88999887643222111110 001122221 12223 468999999999999999
Q ss_pred HHHHHhCCCeEEEcCC
Q 017153 118 GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~ 133 (376)
+.+++++|+.|+..|.
T Consensus 78 ~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 78 VVPILKAGIDCAVISV 93 (265)
T ss_pred HHHHHHcCCCEEEeCh
Confidence 9999999999997664
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.8e-05 Score=74.43 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=67.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeee--c--CcceEEeecCccCC-CCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF--Q--DKAYTVEELTEDSF-DGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~--~--~~~~~v~~~~~~~~-~~~DvVf~a~~~ 111 (376)
|||+|+|++|.+|+.+++.+.++ |.++++++.++.. .++.... + ...+.+.. +.+.+ .++|+|++|+++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~-d~~~l~~~~DvVIdfT~p 78 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTD-DLEAVETDPDVLIDFTTP 78 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeC-CHHHhcCCCCEEEECCCh
Confidence 79999998899999999999887 9999999876432 1222111 0 01122221 22222 468999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
....+++..++++|+.||.-+..|
T Consensus 79 ~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 79 EGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC
Confidence 999999999999999999766544
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.5e-05 Score=67.48 Aligned_cols=87 Identities=23% Similarity=0.241 Sum_probs=54.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-------ccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-------EDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-------~~~~~~~DvVf~a~~~ 111 (376)
.+.+.|+||||.+|+.|++.+++. |-+.-+.+..++..-.+- .++.+.....| ..++.+.||.|||+++
T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~--~~FSKV~~i~RR~~~d~a--t~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgT 93 (238)
T KOG4039|consen 18 NMSGFVLGATGLCGGGLLKHAQEA--PQFSKVYAILRRELPDPA--TDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGT 93 (238)
T ss_pred ccceEEEeccccccHHHHHHHHhc--ccceeEEEEEeccCCCcc--ccceeeeEEechHHHHHHHhhhcCCceEEEeecc
Confidence 478999999999999999999988 877666544444211111 11111111112 2345799999999987
Q ss_pred chh---------------hhhHHHHHhCCCeEE
Q 017153 112 SIS---------------KKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s---------------~~~~~~~~~~G~~VI 129 (376)
+-. ...++.+.+.||+-+
T Consensus 94 TRgkaGadgfykvDhDyvl~~A~~AKe~Gck~f 126 (238)
T KOG4039|consen 94 TRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTF 126 (238)
T ss_pred cccccccCceEeechHHHHHHHHHHHhCCCeEE
Confidence 544 233444556899833
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=69.54 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=67.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeee----cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF----QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~----~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
+|||+|+||+|..|+++++++.+. |++++++...+.. .|+.... ....+.+.+.......++|++++-+-.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCc
Confidence 599999999999999999999988 8999987654432 1221111 111223322111223688999999988
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
..+.++++.+++.|...|--+--|
T Consensus 80 ~~~~~~l~~~~~~~~~lVIGTTGf 103 (266)
T COG0289 80 EATLENLEFALEHGKPLVIGTTGF 103 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEECCCC
Confidence 999999999999998866665555
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.5e-05 Score=71.93 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC--CCCcEEEEcCCCchhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISK 115 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~--~~~DvVf~a~~~~~s~ 115 (376)
|++||||+|. |.+|+.+.+.|.....+.++++++..+.. .+....... ..+.. +.+++ .+.|+|+.|.++..-+
T Consensus 1 ~~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~-~~~~~~~~~-~~~~~-~l~~ll~~~~DlVVE~A~~~av~ 76 (267)
T PRK13301 1 MTHRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA-DLPPALAGR-VALLD-GLPGLLAWRPDLVVEAAGQQAIA 76 (267)
T ss_pred CceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH-HHHHHhhcc-CcccC-CHHHHhhcCCCEEEECCCHHHHH
Confidence 3689999999 99999999988764335689988865432 111111111 12211 23333 5799999999999999
Q ss_pred hhHHHHHhCCCeEEEcC-CCC
Q 017153 116 KFGPIAVEKGSIVVDNS-SAF 135 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS-~~~ 135 (376)
++.++.+++|+-++-+| ++|
T Consensus 77 e~~~~iL~~g~dlvv~SvGAL 97 (267)
T PRK13301 77 EHAEGCLTAGLDMIICSAGAL 97 (267)
T ss_pred HHHHHHHhcCCCEEEEChhHh
Confidence 99999999999888788 555
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.6e-05 Score=71.82 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=62.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|+|+ |.+|+.+++.|.+.+ +.++++++.+++.. .+.+... ....... +.++ +.++|+|+.|+++....++
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~-~~~elv~v~d~~~~~a~~~a~~-~~~~~~~-~~~ell~~~DvVvi~a~~~~~~~~ 77 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGR-INAELYAFYDRNLEKAENLASK-TGAKACL-SIDELVEDVDLVVECASVNAVEEV 77 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCC-CCeEEEEEECCCHHHHHHHHHh-cCCeeEC-CHHHHhcCCCEEEEcCChHHHHHH
Confidence 79999998 999999999888652 26888887765421 0111000 0111211 2222 3689999999999999999
Q ss_pred HHHHHhCCCeEEEcCC
Q 017153 118 GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~ 133 (376)
...++++|+.|+..|.
T Consensus 78 ~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 78 VPKSLENGKDVIIMSV 93 (265)
T ss_pred HHHHHHcCCCEEEEch
Confidence 9999999998887664
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.70 E-value=2.9e-05 Score=62.00 Aligned_cols=91 Identities=12% Similarity=0.222 Sum_probs=58.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecC-ccCCCCCcEEEEcCCCchhhhhH
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
||+|+|+ |..|..|++.|.+++++..++..+.+++... +.+.... ...+...+ .+.++++|+||+|.+.....+.+
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-GVQATADDNEEAAQEADVVILAVKPQQLPEVL 78 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-ccccccCChHHhhccCCEEEEEECHHHHHHHH
Confidence 7999998 9999999999988754345666554443211 0111110 12222212 23346899999999999998888
Q ss_pred HHH--HhCCCeEEEcCC
Q 017153 119 PIA--VEKGSIVVDNSS 133 (376)
Q Consensus 119 ~~~--~~~G~~VIDlS~ 133 (376)
..+ ...+..+||..+
T Consensus 79 ~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 79 SEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHTTSEEEEEST
T ss_pred HHHhhccCCCEEEEeCC
Confidence 876 568899999875
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00068 Score=60.97 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=44.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE-----eecCc--cCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-----EELTE--DSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v-----~~~~~--~~~~~~DvVf~a~~~~ 112 (376)
|||||+||||.+|.++++....++| ++++++. +..|.-.. +.+.+ .+++. +++.+.|+||+|-+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH---eVTAivR--n~~K~~~~--~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH---EVTAIVR--NASKLAAR--QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC---eeEEEEe--ChHhcccc--ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 6899999999999999998888877 7777763 22222111 11222 22222 4567999999998776
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=64.20 Aligned_cols=87 Identities=28% Similarity=0.298 Sum_probs=55.0
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCCc--
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGGS-- 112 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~~-- 112 (376)
|.|+||||++|+.+++.|.+++ .++.+++.+.. +. .. ...+.+...| ++ .+.++|+||+|.+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~--~~-~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPS--KA-ED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGG--GH-HH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecCch--hc-cc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 7899999999999999999873 68887764322 11 11 2234443333 22 246999999999842
Q ss_pred ---hhhhhHHHHHhCCC-eEEEcCCCC
Q 017153 113 ---ISKKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 113 ---~s~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
..+...+.+.+.|+ ++|-+|+..
T Consensus 74 ~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 74 DVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred cccccccccccccccccccceeeeccc
Confidence 23334444456776 466566554
|
... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.59 E-value=6.6e-05 Score=62.23 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=61.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s~ 115 (376)
|||||+|+ |..|+..++.+..+ .|.++++++.+++... +..... ..+.... +.++ + .++|+|+.|+|.....
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~-~~~~~v~~v~d~~~~~~~~~~~~-~~~~~~~-~~~~ll~~~~~D~V~I~tp~~~h~ 76 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRS-SPDFEVVAVCDPDPERAEAFAEK-YGIPVYT-DLEELLADEDVDAVIIATPPSSHA 76 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHT-TTTEEEEEEECSSHHHHHHHHHH-TTSEEES-SHHHHHHHTTESEEEEESSGGGHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhc-CCCcEEEEEEeCCHHHHHHHHHH-hcccchh-HHHHHHHhhcCCEEEEecCCcchH
Confidence 58999999 99999999877654 3789999988765321 111110 1122221 2222 2 3799999999999999
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
+++.+++++|..|+
T Consensus 77 ~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 77 EIAKKALEAGKHVL 90 (120)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCEEE
Confidence 99999999999876
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00024 Score=65.23 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecC-ccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~ 116 (376)
+|+++|+|+ |.+|..|.+.|...+ .|+... +++...+.-.. ......+.... ++....+||||++.|-.....
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag---~eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAG---HEVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCC---CeEEEe-cCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 378888886 999999999998754 366543 33333211110 00111233323 233467999999999999888
Q ss_pred hHHHHHh--CCCeEEEcCCCC
Q 017153 117 FGPIAVE--KGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~--~G~~VIDlS~~~ 135 (376)
..+.+.+ .|..|||.+.+.
T Consensus 76 v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 76 VLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred HHHHHHHHhCCeEEEecCCCc
Confidence 8887764 478999998864
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00049 Score=67.01 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=52.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ec-Ccc----CCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--EL-TED----SFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~-~~~----~~~~~DvVf~a~~~~ 112 (376)
|||.|.||||++|+.|++.|.+++| ++.++.........+.. ..+.+. ++ +++ .+.++|+||.|.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~---~V~~l~R~~~~~~~l~~--~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY---QVRCLVRNLRKASFLKE--WGAELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---eEEEEEcChHHhhhHhh--cCCEEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 5899999999999999999988743 67666532111111111 112222 22 222 247899999986542
Q ss_pred hh-------------hhhHHHHHhCCCe-EEEcCC
Q 017153 113 IS-------------KKFGPIAVEKGSI-VVDNSS 133 (376)
Q Consensus 113 ~s-------------~~~~~~~~~~G~~-VIDlS~ 133 (376)
.. ....+.+.++|++ +|-+|+
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 76 PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 21 2233445567874 665665
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00069 Score=65.09 Aligned_cols=157 Identities=11% Similarity=0.196 Sum_probs=90.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCc--eeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s 114 (376)
.|||+|+|+ |..|..+++.|.+++ .+..++.. .+++...+ .+... ....... +.. ...++|+||+|++....
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v-~~r~~~~~~~~l~~~-~g~~~~~-~~~e~~~~aDvVilav~p~~~ 78 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITV-SNRSNETRLQELHQK-YGVKGTH-NKKELLTDANILFLAMKPKDV 78 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEE-ECCCCHHHHHHHHHh-cCceEeC-CHHHHHhcCCEEEEEeCHHHH
Confidence 479999997 999999999988763 12234443 33322111 11110 0122221 222 24689999999999888
Q ss_pred hhhHHHHH---hCCCeEEEcCCCCCCC-------CCCc--EEeeccCHHhhcCcccCCCCCc-EEEcCCchHHHHHHHHh
Q 017153 115 KKFGPIAV---EKGSIVVDNSSAFRMV-------ENVP--LVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAAT 181 (376)
Q Consensus 115 ~~~~~~~~---~~G~~VIDlS~~~R~~-------~~~~--~~lpevN~~~i~~~~~~~~~~~-iVa~PgC~~ta~~l~L~ 181 (376)
.+.+..+. ..+..|||+.+....+ .+.+ ..+|-.....-. +.. ++.+..|.... .-.+.
T Consensus 79 ~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~-------~~t~~~~~~~~~~~~-~~~v~ 150 (279)
T PRK07679 79 AEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILK-------SATAISPSKHATAEH-IQTAK 150 (279)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhc-------ccEEEeeCCCCCHHH-HHHHH
Confidence 88777664 3567899986665432 1112 334433322222 233 33444554443 34578
Q ss_pred HHHHhCCCcEEEE------EEEccccccChHhHH
Q 017153 182 PLHRRAKVTRMVV------STYQAASGAGAAAME 209 (376)
Q Consensus 182 pL~~~~~i~~v~v------~t~~gvSGaGr~~~~ 209 (376)
+|++.+|- ++. ++..+.+|+|-.-.-
T Consensus 151 ~l~~~~G~--~~~v~e~~~~~~~a~~Gsgpa~~~ 182 (279)
T PRK07679 151 ALFETIGL--VSVVEEEDMHAVTALSGSGPAYIY 182 (279)
T ss_pred HHHHhCCc--EEEeCHHHhhhHHHhhcCHHHHHH
Confidence 88888773 233 667888998866433
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0005 Score=68.06 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=61.0
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s 114 (376)
++||||||+ |.+|+. .++.+... |.++++++.+++.. + .........+.. +.++ + .++|+|+.|+|+...
T Consensus 4 ~irvgiiG~-G~i~~~~~~~~~~~~--~~~~l~av~d~~~~-~-~~~~~~~~~~~~-~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 4 KIRVGLIGY-GYASKTFHAPLIAGT--PGLELAAVSSSDAT-K-VKADWPTVTVVS-EPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred cceEEEECC-CHHHHHHHHHHHhhC--CCCEEEEEECCCHH-H-HHhhCCCCceeC-CHHHHhcCCCCCEEEEcCCcHHH
Confidence 589999998 999985 56777766 88999999875421 1 111111122221 2222 2 479999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++.+++++|+.|+
T Consensus 78 ~~~~~~al~aGkhVl 92 (346)
T PRK11579 78 FPLAKAALEAGKHVV 92 (346)
T ss_pred HHHHHHHHHCCCeEE
Confidence 999999999999987
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00036 Score=64.52 Aligned_cols=143 Identities=20% Similarity=0.239 Sum_probs=87.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~~~ 117 (376)
++|+|+|. |.+|..+++++.+.. -.++++++.+++..- +.+......-.+. +.+++ .++|+++.|.++...+++
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~-~~~e~v~v~D~~~ek~~~~~~~~~~~~~s--~ide~~~~~DlvVEaAS~~Av~e~ 76 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGR-VDFELVAVYDRDEEKAKELEASVGRRCVS--DIDELIAEVDLVVEAASPEAVREY 76 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCC-cceeEEEEecCCHHHHHHHHhhcCCCccc--cHHHHhhccceeeeeCCHHHHHHH
Confidence 58999999 999999999998641 358888887654221 1111100011112 23333 789999999999999999
Q ss_pred HHHHHhCCCeEEEcCC-CCCCCCCCcEEeeccC---HHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 118 GPIAVEKGSIVVDNSS-AFRMVENVPLVIPEVN---PEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~-~~R~~~~~~~~lpevN---~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
+++.+++|+-+|-+|- +| .| |++- ++..+ ..++++--.+| +.+-+=+|+.+ +.++|+.|.
T Consensus 77 ~~~~L~~g~d~iV~SVGAL--ad------~~l~erl~~lak-----~~~~rv~~pSG--AiGGlD~l~aa-r~g~i~~V~ 140 (255)
T COG1712 77 VPKILKAGIDVIVMSVGAL--AD------EGLRERLRELAK-----CGGARVYLPSG--AIGGLDALAAA-RVGGIEEVV 140 (255)
T ss_pred hHHHHhcCCCEEEEechhc--cC------hHHHHHHHHHHh-----cCCcEEEecCc--cchhHHHHHHh-hcCCeeEEE
Confidence 9999999987666553 33 11 2221 12222 11344443333 33434445443 337899999
Q ss_pred EEEEccccc
Q 017153 194 VSTYQAASG 202 (376)
Q Consensus 194 v~t~~gvSG 202 (376)
.+|.-....
T Consensus 141 lttrKpp~~ 149 (255)
T COG1712 141 LTTRKPPAE 149 (255)
T ss_pred EEeecChHH
Confidence 988755553
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00044 Score=64.76 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC--ceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~ 115 (376)
++||+|+|+ |.+|..+++.|..+++...+...+.+++... +.+... ..+.... +.+ .+.++|+||.|+|.....
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~DiViiavp~~~~~ 80 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR-YNVSTTT-DWKQHVTSVDTIVLAMPPSAHE 80 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH-cCcEEeC-ChHHHHhcCCEEEEecCHHHHH
Confidence 589999997 9999999998877643344422233332211 111111 0122221 222 246899999999999888
Q ss_pred hhHHHHHh--CCCeEEEcCCCCC
Q 017153 116 KFGPIAVE--KGSIVVDNSSAFR 136 (376)
Q Consensus 116 ~~~~~~~~--~G~~VIDlS~~~R 136 (376)
+....+.+ .+..||+.++.+-
T Consensus 81 ~v~~~l~~~~~~~~vis~~~gi~ 103 (245)
T PRK07634 81 ELLAELSPLLSNQLVVTVAAGIG 103 (245)
T ss_pred HHHHHHHhhccCCEEEEECCCCC
Confidence 87776542 3567898888774
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00085 Score=74.95 Aligned_cols=91 Identities=18% Similarity=0.121 Sum_probs=64.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeE------------EEEEecCCCC-CceeeecCcc---eEEeecCccC----
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRS------------IKMLASKRSA-GKQLSFQDKA---YTVEELTEDS---- 98 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~------------l~~v~s~~~~-g~~~~~~~~~---~~v~~~~~~~---- 98 (376)
+.||+|+|| |++|+..++.|.++ |+.+ ++.+++.... .+.+...... +.+.-.+.++
T Consensus 569 ~~rIlVLGA-G~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~ 645 (1042)
T PLN02819 569 SQNVLILGA-GRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY 645 (1042)
T ss_pred CCcEEEECC-CHHHHHHHHHHHhC--cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence 579999999 99999999999887 7766 5566664321 1111111111 2221112222
Q ss_pred CCCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcC
Q 017153 99 FDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
+.++|+|+.|+|.....+.+..++++|+.++|.+
T Consensus 646 v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 646 VSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 2679999999999999999999999999999987
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00071 Score=67.76 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=59.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
+.||+|+|.+|.+|+.|.+.|.+. ...++..+. +...+ ... ..+.+.++|+||+|+|-....++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~--~~~~V~g~D-~~d~~-----------~~~-~~~~v~~aDlVilavPv~~~~~~l 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR--MQLEVIGHD-PADPG-----------SLD-PATLLQRADVLIFSAPIRHTAALI 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc--CCCEEEEEc-CCccc-----------cCC-HHHHhcCCCEEEEeCCHHHHHHHH
Confidence 479999999999999999999865 245655432 21000 000 022357899999999999998888
Q ss_pred HHHH------hCCCeEEEcCCC
Q 017153 119 PIAV------EKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~------~~G~~VIDlS~~ 134 (376)
+++. +.|+.|.|.+|-
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSv 90 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSI 90 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCC
Confidence 8775 468999999985
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00084 Score=67.39 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-cCcceEEeecC---c----cCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVEELT---E----DSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-~~~~~~v~~~~---~----~~~~~~DvVf~a~ 109 (376)
++||.|+|+ |.||+.++..|+.+ .+.++. +++++.. -..+.. ....+....+| . +.+.+.|+||.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~--~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQN--GDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhC--CCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 378999999 99999999999987 446665 4444311 112211 11122222222 2 1246779999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
|........+.+++.|+.++|.|-.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccC
Confidence 9999999999999999999999865
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0005 Score=68.17 Aligned_cols=91 Identities=20% Similarity=0.306 Sum_probs=58.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC------C-CCeEEEEEecCCC-----CCceeee------cCcceEEe-----ecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD------F-PYRSIKMLASKRS-----AGKQLSF------QDKAYTVE-----ELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~------~-p~~~l~~v~s~~~-----~g~~~~~------~~~~~~v~-----~~~ 95 (376)
++||+|+|. |.+|+.+++.|.++. + ..++++++++++. .|..... ....+... ..+
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 589999998 999999999997651 0 2688988876421 1211100 00001000 012
Q ss_pred ccC-C--CCCcEEEEcCCCch-----hhhhHHHHHhCCCeEEE
Q 017153 96 EDS-F--DGVDIALFSAGGSI-----SKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 96 ~~~-~--~~~DvVf~a~~~~~-----s~~~~~~~~~~G~~VID 130 (376)
.++ + .++|+|+.|+|+.. +.++...++++|+.||-
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 222 2 36899999998643 47888889999999985
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0008 Score=64.66 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=88.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCc--eeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGK--QLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~ 115 (376)
+||+|||+ |.+|..+++.|.+.++ +..++. +.+++ ..+ .+... ....... +.. ...++|+||+|++.....
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~-~~~~~~l~~~-~g~~~~~-~~~e~~~~aDiIiLavkP~~~~ 77 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLN-VSNLKNASDK-YGITITT-NNNEVANSADILILSIKPDLYS 77 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCC-HHHHHHHHHh-cCcEEeC-CcHHHHhhCCEEEEEeChHHHH
Confidence 68999997 9999999999887654 223443 33332 111 11100 0122221 222 246899999999998888
Q ss_pred hhHHHHH---hCCCeEEEcCCCCCCCC-------C--CcEEeeccCHHhhcCcccCCCCCcE-EEcCCchHHHHHHHHhH
Q 017153 116 KFGPIAV---EKGSIVVDNSSAFRMVE-------N--VPLVIPEVNPEAMSGIKVGMGKGAL-IANPNCSTIICLMAATP 182 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~R~~~-------~--~~~~lpevN~~~i~~~~~~~~~~~i-Va~PgC~~ta~~l~L~p 182 (376)
+..+.+. +.+..|||+-+...++. . +.=.+|-..-..-. +... ..++++...-.. .+.-
T Consensus 78 ~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~-------g~t~~~~~~~~~~~~~~-~v~~ 149 (272)
T PRK12491 78 SVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGE-------GMSALCFNEMVTEKDIK-EVLN 149 (272)
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcC-------ceEEEEeCCCCCHHHHH-HHHH
Confidence 8777664 35678999988876432 0 11245544432211 2233 334444433322 2444
Q ss_pred HHHhCCC----cEEEEEEEccccccChH
Q 017153 183 LHRRAKV----TRMVVSTYQAASGAGAA 206 (376)
Q Consensus 183 L~~~~~i----~~v~v~t~~gvSGaGr~ 206 (376)
|++..|- ++=.+++.+++||.|-.
T Consensus 150 lf~~~G~~~~~~E~~~d~~talsgsgPA 177 (272)
T PRK12491 150 IFNIFGQTEVVNEKLMDVVTSISGSSPA 177 (272)
T ss_pred HHHcCCCEEEEcHHHhhhHHHhccCcHH
Confidence 5555553 23357889999999844
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0011 Score=67.87 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=59.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC-------CCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALF 107 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~-------~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~ 107 (376)
+++||||+|. |.+|+.+++.|.++. -..++++.+.+++.. +.-........+. .+.++ + .++|+|+.
T Consensus 2 ~~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~~~~~~~~~~~~~-~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 2 KPLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-KDRGVDLPGILLT-TDPEELVNDPDIDIVVE 78 (426)
T ss_pred CeEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-hccCCCCccccee-CCHHHHhhCCCCCEEEE
Confidence 3599999998 999999999987651 026788888765421 1100110111121 12222 2 36899999
Q ss_pred cCCC-chhhhhHHHHHhCCCeEEE
Q 017153 108 SAGG-SISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 108 a~~~-~~s~~~~~~~~~~G~~VID 130 (376)
|++. ..+.++..+++++|..||-
T Consensus 79 ~tg~~~~~~~~~~~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPARELILKALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHHHHHHHHCCCeEEE
Confidence 9865 5678888899999999984
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00057 Score=66.82 Aligned_cols=88 Identities=13% Similarity=0.214 Sum_probs=61.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCC-ceeeecCcce-EEeecCccC-C--CCCcEEEEcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAG-KQLSFQDKAY-TVEELTEDS-F--DGVDIALFSAGG 111 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g-~~~~~~~~~~-~v~~~~~~~-~--~~~DvVf~a~~~ 111 (376)
+++||||+|+.|+.+...+..+... +. ++++++.+++..- +.+.... .+ .... +.++ + .++|+|+.|+|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~--~~~~~~vav~d~~~~~a~~~a~~~-~~~~~~~-~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL--GGGLELVAVVDRDPERAEAFAEEF-GIAKAYT-DLEELLADPDIDAVYIATPN 77 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC--CCceEEEEEecCCHHHHHHHHHHc-CCCcccC-CHHHHhcCCCCCEEEEcCCC
Confidence 4699999999557777788888876 55 6888887654321 1111100 11 1111 2222 2 358999999999
Q ss_pred chhhhhHHHHHhCCCeEE
Q 017153 112 SISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VI 129 (376)
....+++.+++++|+.|+
T Consensus 78 ~~H~e~~~~AL~aGkhVl 95 (342)
T COG0673 78 ALHAELALAALEAGKHVL 95 (342)
T ss_pred hhhHHHHHHHHhcCCEEE
Confidence 999999999999999988
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00067 Score=64.49 Aligned_cols=95 Identities=9% Similarity=0.166 Sum_probs=58.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
++||+|+|+ |.+|..+++.|.+.+++..++. +.+++... +.+.... .+.+.....+.+.++|+||+|++.....+.
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~-v~~r~~~~~~~~~~~~-g~~~~~~~~~~~~~advVil~v~~~~~~~v 78 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDII-VSDPSPEKRAALAEEY-GVRAATDNQEAAQEADVVVLAVKPQVMEEV 78 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEE-EEcCCHHHHHHHHHhc-CCeecCChHHHHhcCCEEEEEcCHHHHHHH
Confidence 479999998 9999999998887633223443 34433211 1111100 122221111224689999999999988888
Q ss_pred HHHHHhC-CCeEEEcCCCCC
Q 017153 118 GPIAVEK-GSIVVDNSSAFR 136 (376)
Q Consensus 118 ~~~~~~~-G~~VIDlS~~~R 136 (376)
.+.+... +..||++++...
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~ 98 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVT 98 (267)
T ss_pred HHHHHhhcCCEEEEecCCCC
Confidence 7776543 567888877653
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0023 Score=62.49 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=57.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C-CCCcEEEEcCCCchhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSISK 115 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~-~~~DvVf~a~~~~~s~ 115 (376)
++++|+|+|+ |.+|+.+.+.|.+.+ .++.++..+. . ...... ..+... .+.++ . .++|+||+|+|.....
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G---~~V~~~d~~~-~-~~~a~~-~gv~~~-~~~~e~~~~~aDvVilavp~~~~~ 106 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQG---HTVLATSRSD-Y-SDIAAE-LGVSFF-RDPDDFCEEHPDVVLLCTSILSTE 106 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCC---CEEEEEECcc-H-HHHHHH-cCCeee-CCHHHHhhCCCCEEEEecCHHHHH
Confidence 3689999997 999999999998752 4666544322 1 111100 011111 12222 2 3689999999998888
Q ss_pred hhHHHH----HhCCCeEEEcCC
Q 017153 116 KFGPIA----VEKGSIVVDNSS 133 (376)
Q Consensus 116 ~~~~~~----~~~G~~VIDlS~ 133 (376)
+...++ ...|+.|+|.++
T Consensus 107 ~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 107 AVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred HHHHhhhhhccCCCCEEEecCC
Confidence 877765 246889999998
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00088 Score=60.27 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=67.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec--CCCCCceeeecCcceEEeecC-ccC-C--CCCcEEEEcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSFQDKAYTVEELT-EDS-F--DGVDIALFSAGG 111 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s--~~~~g~~~~~~~~~~~v~~~~-~~~-~--~~~DvVf~a~~~ 111 (376)
++.++.|+|+ |..|+.|+..--. +...++++.+.+ ++..|+.+ .++.+..++ .+. + .++|++++|.|.
T Consensus 83 ~~tnviiVG~-GnlG~All~Y~f~-~~~~~~iv~~FDv~~~~VG~~~----~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 83 KTTNVIIVGV-GNLGRALLNYNFS-KKNGMKIVAAFDVDPDKVGTKI----GDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred cceeEEEEcc-ChHHHHHhcCcch-hhcCceEEEEecCCHHHhCccc----CCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 4689999999 9999998763321 115688887653 33455544 246777655 222 2 389999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~R~ 137 (376)
..+.+.+..+.++|++-|=+=++-|+
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNFtPv~l 182 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNFTPVRL 182 (211)
T ss_pred HHHHHHHHHHHHcCCceEEeccceEe
Confidence 99999999999999998855444443
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00033 Score=58.28 Aligned_cols=84 Identities=17% Similarity=0.204 Sum_probs=52.9
Q ss_pred CcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCc--eeeecCcceEEeecCccC-CC--CCcEEEEcCCCchhhhhHH
Q 017153 46 GVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDS-FD--GVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 46 GaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~~~~-~~--~~DvVf~a~~~~~s~~~~~ 119 (376)
|+ |.+|+.++++|.++.- ..++++.+.+++ ... ..........+. .+.++ +. +.|+|++|++.....++.+
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dvvVE~t~~~~~~~~~~ 77 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFT-TDLEELIDDPDIDVVVECTSSEAVAEYYE 77 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEE-SSHHHHHTHTT-SEEEE-SSCHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhccccccc-CCHHHHhcCcCCCEEEECCCchHHHHHHH
Confidence 44 9999999999988611 178998888765 100 000000111111 12222 23 7999999999999999999
Q ss_pred HHHhCCCeEEEcC
Q 017153 120 IAVEKGSIVVDNS 132 (376)
Q Consensus 120 ~~~~~G~~VIDlS 132 (376)
.++++|+-||-.|
T Consensus 78 ~~L~~G~~VVt~n 90 (117)
T PF03447_consen 78 KALERGKHVVTAN 90 (117)
T ss_dssp HHHHTTCEEEES-
T ss_pred HHHHCCCeEEEEC
Confidence 9999999999654
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00042 Score=64.23 Aligned_cols=89 Identities=22% Similarity=0.230 Sum_probs=53.6
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--CceeeecCcceEEeecC-cc----CCCCCcEEEEcCCCc--
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSFQDKAYTVEELT-ED----SFDGVDIALFSAGGS-- 112 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~~~~~~~~v~~~~-~~----~~~~~DvVf~a~~~~-- 112 (376)
|+|+||||.+|+.+++.|... .+++.+++..... .+.+...+..+...+.+ ++ .+.++|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~ 77 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHP 77 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCC
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchh
Confidence 789999999999999999884 5678777643311 11111112122111222 22 257999999999943
Q ss_pred ----hhhhhHHHHHhCCCeEEEcCC
Q 017153 113 ----ISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 113 ----~s~~~~~~~~~~G~~VIDlS~ 133 (376)
....+...+.++|++-+-.|+
T Consensus 78 ~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 78 SELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred hhhhhhhhHHHhhhccccceEEEEE
Confidence 344455566678888553443
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0011 Score=66.61 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=55.7
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCCC-ceeee--cCcceEEeecC---ccC----CCCCcEEEEcCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAG-KQLSF--QDKAYTVEELT---EDS----FDGVDIALFSAG 110 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~g-~~~~~--~~~~~~v~~~~---~~~----~~~~DvVf~a~~ 110 (376)
|.|+|+ |++|+.+++.|.++ +.. +++ +++++... +.+.. ....+.....| .+. +.++|+|+.|+|
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~--~~~~~v~-va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g 76 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARR--GPFEEVT-VADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAG 76 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCT--TCE-EEE-EEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred CEEEcC-cHHHHHHHHHHhcC--CCCCcEE-EEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCc
Confidence 689999 99999999999987 656 544 44443211 11111 11233333333 222 378999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.......++.+++.|+..||.|.
T Consensus 77 p~~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 77 PFFGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GGGHHHHHHHHHHHT-EEEESS-
T ss_pred cchhHHHHHHHHHhCCCeeccch
Confidence 99898999999999999999443
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0036 Score=60.32 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=70.2
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-e-cCcceEEee-cCccC-C-----CCCc-EEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-F-QDKAYTVEE-LTEDS-F-----DGVD-IAL 106 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~-~~~~~~v~~-~~~~~-~-----~~~D-vVf 106 (376)
.+++||.|+|++|..|+++.+.+.+ ++++|+........|..+. . .+.++.+.. -+.+. + ...| |++
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvI 85 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVV 85 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEE
Confidence 3469999999999999999999987 6899998776665554433 1 122344431 12111 2 2578 899
Q ss_pred EcCCCchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 107 FSAGGSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+-+-.....++++.+.+.|+.+|--+.-|
T Consensus 86 DFT~P~a~~~~~~~~~~~g~~~VvGTTG~ 114 (286)
T PLN02775 86 DYTLPDAVNDNAELYCKNGLPFVMGTTGG 114 (286)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 99999999999999999999988766655
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=60.53 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=59.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--------cCcceEEeecC-ccCCCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--------QDKAYTVEELT-EDSFDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--------~~~~~~v~~~~-~~~~~~~DvVf~a~ 109 (376)
|||+|+|++|.+|..+.+.|.+.+| ++... +++.. -+.+.. .+....+...+ .+...++|+||+|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~---~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN---KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC---EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 5899999779999999999988643 55433 33221 000000 00011122112 23356899999999
Q ss_pred CCchhhhhHHHHHh--CCCeEEEcCCCCCC
Q 017153 110 GGSISKKFGPIAVE--KGSIVVDNSSAFRM 137 (376)
Q Consensus 110 ~~~~s~~~~~~~~~--~G~~VIDlS~~~R~ 137 (376)
+.....+..+.+.. .+..|||++..+..
T Consensus 77 p~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 77 PWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 99888777666542 35679999988754
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.001 Score=60.87 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=49.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
|||+|||++|..|+-+.+.+.+.++ ++. +.++|+||+|+|-....++.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~---~v~----------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL---GVY----------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC---EEE----------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 5899999999999999999987543 221 247899999999999988887
Q ss_pred HHHhCCCeEEEcCCC
Q 017153 120 IAVEKGSIVVDNSSA 134 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~ 134 (376)
++. ..++|.+|-
T Consensus 50 ~~~---~~v~Dv~Sv 61 (197)
T PRK06444 50 SYD---NNFVEISSV 61 (197)
T ss_pred HhC---CeEEecccc
Confidence 764 358899885
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=63.09 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=59.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEee-cC--ccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LT--EDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~-~~--~~~~~~~DvVf~a~~~~~s~ 115 (376)
+++|+|+|. |.+|+.+.+.|.++++ ...+ +....+.+........++..+. .+ .+...++|+||.|+|-..+.
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~-~v~i--~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~ 78 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL-VVRI--IGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATE 78 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC-eEEE--EeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHH
Confidence 589999996 9999999999998643 2222 2222222111110000111110 01 22346789999999999999
Q ss_pred hhHHHHH---hCCCeEEEcCCCC
Q 017153 116 KFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~ 135 (376)
++..++. +.|+.|.|.++.=
T Consensus 79 ~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 79 EVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred HHHHHhcccCCCCCEEEeccccc
Confidence 9888876 5799999999863
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=61.96 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=86.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCc--eeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~ 115 (376)
+||+|+|+ |.+|..+++.|.+.+ .+..++..+.. +...+ .+........+.. +.. ...++|+||+|++.....
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r-~~~~~~~~l~~~~~~~~~~~-~~~e~~~~aDvVilavpp~~~~ 78 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSS-SKNEHFNQLYDKYPTVELAD-NEAEIFTKCDHSFICVPPLAVL 78 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeC-CcHHHHHHHHHHcCCeEEeC-CHHHHHhhCCEEEEecCHHHHH
Confidence 68999997 999999999888763 12245554433 22111 1100111112211 222 246899999999998888
Q ss_pred hhHHHHH---hCCCeEEEcCCCCCCCC------C--CcEEeeccCHHhhcCcccCCCCCcEEE-cCCchHHHHHHHHhHH
Q 017153 116 KFGPIAV---EKGSIVVDNSSAFRMVE------N--VPLVIPEVNPEAMSGIKVGMGKGALIA-NPNCSTIICLMAATPL 183 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~R~~~------~--~~~~lpevN~~~i~~~~~~~~~~~iVa-~PgC~~ta~~l~L~pL 183 (376)
++..++. ..+..||++.+-.-.++ . +.=.+|-..-..-+ +...++ +++....-.. .+..|
T Consensus 79 ~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~-------g~t~~~~~~~~~~~~~~-~v~~l 150 (277)
T PRK06928 79 PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGV-------GTSLVAHAETVNEANKS-RLEET 150 (277)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhh-------hcEEEecCCCCCHHHHH-HHHHH
Confidence 8777663 35778898887664321 0 11234433322111 233332 3333333222 24455
Q ss_pred HHhCCC----cEEEEEEEccccccChHhH
Q 017153 184 HRRAKV----TRMVVSTYQAASGAGAAAM 208 (376)
Q Consensus 184 ~~~~~i----~~v~v~t~~gvSGaGr~~~ 208 (376)
+..+|- ++-.+++.+++||.|-.=.
T Consensus 151 ~~~~G~~~~v~E~~~d~~tal~gsgPA~~ 179 (277)
T PRK06928 151 LSHFSHVMTIREENMDIASNLTSSSPGFI 179 (277)
T ss_pred HHhCCCEEEEchhhCceeeeeecCHHHHH
Confidence 555553 3335788899999985533
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00083 Score=64.57 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=54.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|. |.+|+.+.+.|.++++ ++.++. ++... +.....+ .+.....+.+...++|+||+|+|.....+..
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~---~V~~~d-~~~~~~~~a~~~g-~~~~~~~~~~~~~~aDlVilavp~~~~~~~~ 74 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH---TVYGVS-RRESTCERAIERG-LVDEASTDLSLLKDCDLVILALPIGLLLPPS 74 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC---EEEEEE-CCHHHHHHHHHCC-CcccccCCHhHhcCCCEEEEcCCHHHHHHHH
Confidence 48999997 9999999999987633 555443 22110 0000000 0111111223357899999999988877766
Q ss_pred HHHH---hCCCeEEEcCCC
Q 017153 119 PIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~---~~G~~VIDlS~~ 134 (376)
+.+. ..++.|+|.++-
T Consensus 75 ~~l~~~l~~~~ii~d~~Sv 93 (279)
T PRK07417 75 EQLIPALPPEAIVTDVGSV 93 (279)
T ss_pred HHHHHhCCCCcEEEeCcch
Confidence 6554 346777776653
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0013 Score=66.14 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=56.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
.++|+|+|++|.+|+.+.+.|..++| ++... +++.. .. ..+.+.++|+||+|+|.....+..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~---~V~~~-d~~~~-------------~~-~~~~~~~aDlVilavP~~~~~~~~ 159 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGY---QVRIL-EQDDW-------------DR-AEDILADAGMVIVSVPIHLTEEVI 159 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCC---eEEEe-CCCcc-------------hh-HHHHHhcCCEEEEeCcHHHHHHHH
Confidence 47999999779999999999988644 44433 22210 00 012246899999999999888877
Q ss_pred HHHH--hCCCeEEEcCCC
Q 017153 119 PIAV--EKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~--~~G~~VIDlS~~ 134 (376)
..+. ..|+.|+|+++-
T Consensus 160 ~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 160 ARLPPLPEDCILVDLTSV 177 (374)
T ss_pred HHHhCCCCCcEEEECCCc
Confidence 7664 468999999884
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0016 Score=52.51 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=57.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe--cCCCCCceeeecCcceEEe-ecC--ccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAGKQLSFQDKAYTVE-ELT--EDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~--s~~~~g~~~~~~~~~~~v~-~~~--~~~~~~~DvVf~a~~~~~ 113 (376)
+.||+|+|+ |..|+.++..+... ..+++.++. +++..|+.+. .+++. .++ .+.. ++|+.++|.|...
T Consensus 3 ~~~v~ivGa-g~~G~a~~~~~~~~--~g~~i~~~~dv~~~~~G~~i~----gipV~~~~~~l~~~~-~i~iaii~VP~~~ 74 (96)
T PF02629_consen 3 KTNVIIVGA-GNLGRALLYNGFSM--RGFGIVAVFDVDPEKIGKEIG----GIPVYGSMDELEEFI-EIDIAIITVPAEA 74 (96)
T ss_dssp TEEEEEETT-TSHHHHHHHHHHHH--HCECEEEEEEECTTTTTSEET----TEEEESSHHHHHHHC-TTSEEEEES-HHH
T ss_pred CCeEEEECC-CCcHHHHHHhHHHH--cCCCCEEEEEcCCCccCcEEC----CEEeeccHHHhhhhh-CCCEEEEEcCHHH
Confidence 579999999 77778777544433 456666554 4455566553 46666 332 1123 5999999999999
Q ss_pred hhhhHHHHHhCCCeEEE
Q 017153 114 SKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 114 s~~~~~~~~~~G~~VID 130 (376)
+.+.+.++.++|++-|-
T Consensus 75 a~~~~~~~~~~gIk~i~ 91 (96)
T PF02629_consen 75 AQEVADELVEAGIKGIV 91 (96)
T ss_dssp HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 99999999999998653
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0041 Score=63.85 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=59.1
Q ss_pred eeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eee--ecCcceEEeecC--ccCCCCCc
Q 017153 30 RVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS--FQDKAYTVEELT--EDSFDGVD 103 (376)
Q Consensus 30 ~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~--~~~~~~~v~~~~--~~~~~~~D 103 (376)
+++|-+..+.|||.|.|+||++|+.|++.|.++++ ++.++.. ...+. .+. .....+.+...| ...+.++|
T Consensus 110 ~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld~-~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D 185 (442)
T PLN02206 110 KIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVDN-FFTGRKENVMHHFSNPNFELIRHDVVEPILLEVD 185 (442)
T ss_pred cCccccccCCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEeC-CCccchhhhhhhccCCceEEEECCccChhhcCCC
Confidence 34555555679999999999999999999988743 5655532 11111 100 011122222222 12245799
Q ss_pred EEEEcCCCch------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 104 IALFSAGGSI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 104 vVf~a~~~~~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+||-+..... +..++..+.+.|+++|-.|+..
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 9998764211 1223344456788888888864
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0021 Score=62.50 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=55.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.+||+|+|+ |.+|..+.+.|...++ ..++.++ +++..- +.....+....+.....+.+.++|+||+|+|.....+.
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~-~~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v 82 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGL-AGEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAV 82 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCC-CcEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 368999997 9999999999987632 1244433 332110 00000110011111112235689999999999877666
Q ss_pred HHHHH---hCCCeEEEcCCC
Q 017153 118 GPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~ 134 (376)
...+. ..|..|+|.++.
T Consensus 83 ~~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHHHhhCCCCCEEEeCccc
Confidence 65543 457888988763
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0011 Score=62.77 Aligned_cols=94 Identities=13% Similarity=0.204 Sum_probs=56.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|+|+ |.+|+.+++.|...++. .+.+.+.+++.. .+.+........+.. +..+ ..++|+||+|++.....+.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~-~~~i~v~~r~~~~~~~l~~~~~~~~~~~-~~~~~~~~aDvVilav~p~~~~~v 77 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPAD-VSEIIVSPRNAQIAARLAERFPKVRIAK-DNQAVVDRSDVVFLAVRPQIAEEV 77 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCC-hheEEEECCCHHHHHHHHHHcCCceEeC-CHHHHHHhCCEEEEEeCHHHHHHH
Confidence 47999997 99999999998876432 222334443211 111111100122221 2222 4679999999998777776
Q ss_pred HHHH-HhCCCeEEEcCCCCC
Q 017153 118 GPIA-VEKGSIVVDNSSAFR 136 (376)
Q Consensus 118 ~~~~-~~~G~~VIDlS~~~R 136 (376)
.+.+ ...|..||+..+...
T Consensus 78 l~~l~~~~~~~vis~~ag~~ 97 (258)
T PRK06476 78 LRALRFRPGQTVISVIAATD 97 (258)
T ss_pred HHHhccCCCCEEEEECCCCC
Confidence 6654 235778999887765
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.003 Score=58.37 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=64.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeeecCcceEEeecC-ccCC---CCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQDKAYTVEELT-EDSF---DGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~~~~~~~v~~~~-~~~~---~~~DvVf~a~~~~ 112 (376)
+.+|+|+|+ |..|+.+++.+... .+.++++++.+.+ ..++.+ . ...+...+ .+++ .++|+|+.|+|..
T Consensus 84 ~~rV~IIGa-G~iG~~l~~~~~~~-~~g~~ivgv~D~d~~~~~~~i--~--g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 84 TWNVALVGA-GNLGRALLNYNGFE-KRGFKIVAAFDVDPEKIGTKI--G--GIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CcEEEEECC-CHHHHHHHHhhhcc-cCCcEEEEEEECChhhcCCEe--C--CeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 579999999 99999999865322 2578999887653 222222 1 12232211 1222 3699999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R~ 137 (376)
...+....+.++|++.|.+-.++.+
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~p~~~ 182 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFAPVRL 182 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecCceee
Confidence 9989899999999998877666644
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0023 Score=65.68 Aligned_cols=89 Identities=19% Similarity=0.350 Sum_probs=57.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|++|.+|..+.+.|.+.++ ++..+............. ..+.+. .+. +.+.++|+||+|+|.....+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~~r~~~~~~~~a~~-~gv~~~-~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVTGRDPKKGKEVAKE-LGVEYA-NDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC---EEEEEECChHHHHHHHHH-cCCeec-cCHHHHhccCCEEEEecCHHHHHHHH
Confidence 5899999889999999999987643 554443211111111100 011111 122 2356899999999998877777
Q ss_pred HHHH---hCCCeEEEcCC
Q 017153 119 PIAV---EKGSIVVDNSS 133 (376)
Q Consensus 119 ~~~~---~~G~~VIDlS~ 133 (376)
..+. ..|+.|+|.++
T Consensus 76 ~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHhhCCCCCEEEEccc
Confidence 6654 46889999997
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0022 Score=61.43 Aligned_cols=90 Identities=11% Similarity=0.188 Sum_probs=55.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|. |.+|..+.+.|.+.++ ..++... +++... +.....+ ......+..++.++|+||+|+|.....+..
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~-~~~v~~~-d~~~~~~~~~~~~g--~~~~~~~~~~~~~aD~Vilavp~~~~~~~~ 75 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGL-ISKVYGY-DHNELHLKKALELG--LVDEIVSFEELKKCDVIFLAIPVDAIIEIL 75 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCC-CCEEEEE-cCCHHHHHHHHHCC--CCcccCCHHHHhcCCEEEEeCcHHHHHHHH
Confidence 48999997 9999999999987643 2344433 332110 0000000 100011222234599999999999888877
Q ss_pred HHHH--hCCCeEEEcCCC
Q 017153 119 PIAV--EKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~--~~G~~VIDlS~~ 134 (376)
..+. ..|..|+|.++.
T Consensus 76 ~~l~~l~~~~iv~d~gs~ 93 (275)
T PRK08507 76 PKLLDIKENTTIIDLGST 93 (275)
T ss_pred HHHhccCCCCEEEECccc
Confidence 7664 357789997764
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.002 Score=61.66 Aligned_cols=94 Identities=10% Similarity=0.130 Sum_probs=57.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~ 116 (376)
|||+|+|+ |.+|..+++.|.+.++ +..++. +.+++... +.+......+.+.. +..+ ..++|+||+|++.....+
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~-v~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~aDiVilav~p~~~~~ 77 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLT-ITNRTPAKAYHIKERYPGIHVAK-TIEEVISQSDLIFICVKPLDIYP 77 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCHHHHHHHHHHcCCeEEEC-CHHHHHHhCCEEEEecCHHHHHH
Confidence 47999997 9999999999887642 112333 44443211 11111001122221 2222 468999999999888777
Q ss_pred hHHHHH---hCCCeEEEcCCCCC
Q 017153 117 FGPIAV---EKGSIVVDNSSAFR 136 (376)
Q Consensus 117 ~~~~~~---~~G~~VIDlS~~~R 136 (376)
..+.+. ..+..|||+++...
T Consensus 78 vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 78 LLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHHHHHhhcCCCCEEEEECCCCC
Confidence 776653 35778999998654
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0058 Score=58.66 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=65.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeee-cCcceEEeec-----CccC-CCC-Cc-EEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSF-QDKAYTVEEL-----TEDS-FDG-VD-IALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~-~~~~~~v~~~-----~~~~-~~~-~D-vVf~a~ 109 (376)
+||.|+||+|..|+++++.+.. ++++|+.. .+....+..... .+.++.+... +.+. +.. +| |+++-+
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT 77 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT 77 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC
Confidence 5899999999999999999876 68999975 444434433221 1124444211 1111 233 88 999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
-.....+++..+.+.|+.+|-.+.-|
T Consensus 78 ~P~~~~~n~~~~~~~gv~~ViGTTG~ 103 (275)
T TIGR02130 78 HPSAVNDNAAFYGKHGIPFVMGTTGG 103 (275)
T ss_pred ChHHHHHHHHHHHHCCCCEEEcCCCC
Confidence 99999999999999999988666554
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0013 Score=65.20 Aligned_cols=93 Identities=20% Similarity=0.317 Sum_probs=54.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+||||.+|+++.+.|..+ +...++..+. ++ .....+......-.+..+ .+.+.++|+||.+++.......
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~-~gv~~lilv~-R~~~rl~~La~el~~~~i~~l-~~~l~~aDiVv~~ts~~~~~~I 231 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAK-TGVAELLLVA-RQQERLQELQAELGGGKILSL-EEALPEADIVVWVASMPKGVEI 231 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhh-CCCCEEEEEc-CCHHHHHHHHHHhccccHHhH-HHHHccCCEEEECCcCCcCCcC
Confidence 479999999999999999999753 1223555443 32 111111100000001111 1235789999999876443222
Q ss_pred HHHHHhCCCeEEEcCCC
Q 017153 118 GPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~ 134 (376)
-+.....++.+||++=+
T Consensus 232 ~~~~l~~~~~viDiAvP 248 (340)
T PRK14982 232 DPETLKKPCLMIDGGYP 248 (340)
T ss_pred CHHHhCCCeEEEEecCC
Confidence 33445789999999876
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0066 Score=59.21 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=55.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
.+|||+|+|+ |.+|..+.+.|...+| ++.+. +++.. .++ +...++|+||+|+|.....+
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~---~V~~~-~r~~~---------------~~~~~~~~~advvi~~vp~~~~~~ 62 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGH---RVRVW-SRRSG---------------LSLAAVLADADVIVSAVSMKGVRP 62 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCC---EEEEE-eCCCC---------------CCHHHHHhcCCEEEEECChHHHHH
Confidence 3589999998 9999999999987644 55433 33221 011 22468999999999987777
Q ss_pred hHHHHH----hCCCeEEEcCCCC
Q 017153 117 FGPIAV----EKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~----~~G~~VIDlS~~~ 135 (376)
..+.+. +.|..|||++..+
T Consensus 63 v~~~l~~~~~~~~~ivi~~s~gi 85 (308)
T PRK14619 63 VAEQVQALNLPPETIIVTATKGL 85 (308)
T ss_pred HHHHHHHhcCCCCcEEEEeCCcc
Confidence 766653 3467899987533
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0029 Score=62.74 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s 114 (376)
++||||+|+ |.+++. .++.+... .+.++++++++++..-...........+.. +.++ + .++|+|+.|+|+...
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~-~~~~~l~av~d~~~~~~~~~~~~~~~~~~~-~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNR-KDSWHVAHIFRRHAKPEEQAPIYSHIHFTS-DLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcC-CCCEEEEEEEcCChhHHHHHHhcCCCcccC-CHHHHhcCCCCCEEEEeCCchHH
Confidence 389999998 987653 45655432 267999999876531111111111122221 2222 3 478999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++.+++++|..|+
T Consensus 78 ~~~~~~al~aGkhVl 92 (344)
T PRK10206 78 FEYAKRALEAGKNVL 92 (344)
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999999998877
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.012 Score=51.96 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=51.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE--eecCccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV--EELTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v--~~~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
..||.|+|+ |-+|...++.|.+. ..++.++ +++.. +.+... ..+.+ ..+.+.++.++|+||.|++....-.
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~---ga~V~VI-sp~~~-~~l~~l-~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDT---GAFVTVV-SPEIC-KEMKEL-PYITWKQKTFSNDDIKDAHLIYAATNQHAVNM 85 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEE-cCccC-HHHHhc-cCcEEEecccChhcCCCceEEEECCCCHHHHH
Confidence 589999999 99999999998875 3466655 33221 111110 11222 2344556789999999998876555
Q ss_pred hHHHHHhCCC
Q 017153 117 FGPIAVEKGS 126 (376)
Q Consensus 117 ~~~~~~~~G~ 126 (376)
....+.+.+.
T Consensus 86 ~i~~~a~~~~ 95 (157)
T PRK06719 86 MVKQAAHDFQ 95 (157)
T ss_pred HHHHHHHHCC
Confidence 4544444444
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0048 Score=58.83 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=50.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC----C------CC-CcEEEEcC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS----F------DG-VDIALFSA 109 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~----~------~~-~DvVf~a~ 109 (376)
+|.|.||||++|+.+++.|.+.++ ++.+++...+.... .+...+...-.|++. + .+ +|.+|++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~---~V~~~~R~~~~~~~--~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~ 75 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV---PFLVASRSSSSSAG--PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVA 75 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC---cEEEEeCCCccccC--CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeC
Confidence 489999999999999999988644 56555422111110 010001110011211 2 46 99999998
Q ss_pred CCc-----hhhhhHHHHHhCCCe-EEEcCCC
Q 017153 110 GGS-----ISKKFGPIAVEKGSI-VVDNSSA 134 (376)
Q Consensus 110 ~~~-----~s~~~~~~~~~~G~~-VIDlS~~ 134 (376)
+.. ....+...+.++|++ +|=+|+.
T Consensus 76 ~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~ 106 (285)
T TIGR03649 76 PPIPDLAPPMIKFIDFARSKGVRRFVLLSAS 106 (285)
T ss_pred CCCCChhHHHHHHHHHHHHcCCCEEEEeecc
Confidence 753 223344555678875 6656653
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0026 Score=61.38 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=53.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~ 116 (376)
++||+|+|. |.+|..+.+.|...+ .++.+ .+++.. .+.+... ...+.. +++ .+.++|+||+|+|.....+
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g---~~v~~-~d~~~~~~~~~~~~--g~~~~~-~~~e~~~~~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAG---YSLVV-YDRNPEAVAEVIAA--GAETAS-TAKAVAEQCDVIITMLPNSPHVK 73 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCC---CeEEE-EcCCHHHHHHHHHC--CCeecC-CHHHHHhcCCEEEEeCCCHHHHH
Confidence 478999997 999999999998753 35543 333211 1111111 111211 222 2468999999999765433
Q ss_pred hH----H---HHHhCCCeEEEcCCCC
Q 017153 117 FG----P---IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~----~---~~~~~G~~VIDlS~~~ 135 (376)
.+ . .....|..+||.|...
T Consensus 74 ~v~~~~~~~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HHHcCcchHhhcCCCCcEEEECCCCC
Confidence 22 1 1224678899998764
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=59.97 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeee--cCcceEEeecC--ccCCCCCcEEEEcC
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF--QDKAYTVEELT--EDSFDGVDIALFSA 109 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~--~~~~~~v~~~~--~~~~~~~DvVf~a~ 109 (376)
..+.|||.|.|+||++|+.|++.|.+++ .+++++... ..+. .... ....+.+...| ...+.++|+||-|.
T Consensus 117 ~~~~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr~-~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlA 192 (436)
T PLN02166 117 GRKRLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDNF-FTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLA 192 (436)
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeCC-CCccHhHhhhhccCCceEEEECccccccccCCCEEEECc
Confidence 3345899999999999999999998864 366665422 1111 1100 01122222222 12246899999987
Q ss_pred CCch------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 110 GGSI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 110 ~~~~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.... +..++..+.+.|+++|=.|+..
T Consensus 193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~ 236 (436)
T PLN02166 193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236 (436)
T ss_pred eeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHH
Confidence 4211 1222333345688888777754
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.017 Score=57.84 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|||.|.|+|||+|+.|++.|.++ ...++.++.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~--~g~~V~~l~ 46 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTE--TPHKVLALD 46 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhc--CCCEEEEEe
Confidence 3578999999999999999999876 334676664
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0012 Score=58.32 Aligned_cols=88 Identities=13% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISK- 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~- 115 (376)
++|||+||. |..|..+.+.|.+++| ++.... ++. .-+.+... .....+ ++.++ .++|+||+|+++..+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~---~v~~~d-~~~~~~~~~~~~--g~~~~~-s~~e~~~~~dvvi~~v~~~~~v~ 72 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY---EVTVYD-RSPEKAEALAEA--GAEVAD-SPAEAAEQADVVILCVPDDDAVE 72 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT---EEEEEE-SSHHHHHHHHHT--TEEEES-SHHHHHHHBSEEEE-SSSHHHHH
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC---eEEeec-cchhhhhhhHHh--hhhhhh-hhhhHhhcccceEeecccchhhh
Confidence 379999998 9999999999988644 665443 221 11111111 122222 23333 6789999999986543
Q ss_pred hhHHH--HH---hCCCeEEEcCCC
Q 017153 116 KFGPI--AV---EKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~--~~---~~G~~VIDlS~~ 134 (376)
+.... +. ..|..+||+|..
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred hhhhhhHHhhccccceEEEecCCc
Confidence 33222 21 345566666554
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=58.62 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=60.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC------C-CCeEEEEEecCCC-----CCceeee-------cC--cce----EEee
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD------F-PYRSIKMLASKRS-----AGKQLSF-------QD--KAY----TVEE 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~------~-p~~~l~~v~s~~~-----~g~~~~~-------~~--~~~----~v~~ 93 (376)
++||+|+|. |.||+.++++|.++. + -.+++++++.++. .|-.+.. .+ ..+ ....
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 589999998 999999999987631 1 1477877765321 1211100 00 001 0011
Q ss_pred cCccC-C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcC
Q 017153 94 LTEDS-F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 94 ~~~~~-~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
.+.++ + .++||++.|++...+.++..+++++|+.||-.+
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtan 122 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSN 122 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECC
Confidence 12222 2 478999999999999999999999999999544
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0023 Score=56.22 Aligned_cols=106 Identities=16% Similarity=0.338 Sum_probs=64.2
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--------cC----cceEEeecCc-cCCCCCcEEE
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--------QD----KAYTVEELTE-DSFDGVDIAL 106 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--------~~----~~~~v~~~~~-~~~~~~DvVf 106 (376)
||+|+|+ |..|..+...|..++ .++... +++. .-+.+.. .+ ..+.+. .|. +.+.++|+++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g---~~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t-~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNG---HEVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKAT-TDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCT---EEEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEE-SSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcC---CEEEEE-eccHHHHHHHHHhCCCCCCCCCcccCcccccc-cCHHHHhCcccEEE
Confidence 7999999 999999999999873 455544 3331 1000000 00 123332 233 3358999999
Q ss_pred EcCCCchhhhhHHHHH---hCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
.|+|+...+++.+++. +.+..+|-++.-| +.+.-..+.++-++.+.
T Consensus 75 iavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~--~~~~~~~~~~~i~~~~~ 123 (157)
T PF01210_consen 75 IAVPSQAHREVLEQLAPYLKKGQIIISATKGF--EPGTLLLLSEVIEEILP 123 (157)
T ss_dssp E-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE--ETTEEEEHHHHHHHHHS
T ss_pred ecccHHHHHHHHHHHhhccCCCCEEEEecCCc--ccCCCccHHHHHHHHhh
Confidence 9999999988888775 4788899888777 23334555566555554
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0087 Score=58.87 Aligned_cols=93 Identities=14% Similarity=0.279 Sum_probs=56.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC------Cceeee-cCcce-----EEe-ecCccCCCCCcEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA------GKQLSF-QDKAY-----TVE-ELTEDSFDGVDIA 105 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~------g~~~~~-~~~~~-----~v~-~~~~~~~~~~DvV 105 (376)
+|||+|+|+ |.+|..+...|.+++| ++..+..+... |..+.. .+... .+. ..+.+...++|+|
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~---~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA---DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC---cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEE
Confidence 479999998 9999999999988754 45444322111 111100 00000 011 1123335689999
Q ss_pred EEcCCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 106 LFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
|+|++.....+..+.+. ..+..||+++..+
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 99999887777666554 3567788886654
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0069 Score=57.46 Aligned_cols=157 Identities=14% Similarity=0.201 Sum_probs=84.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|||. |.+|..+++.|.+.++ +..++.+..+++ ..+.-......+.+.. +.. ...++|+||+|++.....+.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~-~~~~~~~~~~g~~~~~-~~~e~~~~aDvVil~v~~~~~~~v 77 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSN-PARRDVFQSLGVKTAA-SNTEVVKSSDVIILAVKPQVVKDV 77 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCC-HHHHHHHHHcCCEEeC-ChHHHHhcCCEEEEEECcHHHHHH
Confidence 68999997 9999999999887644 233554432332 2111001001122221 222 24689999999988777777
Q ss_pred HHHHH---hCCCeEEEcCCCCCCCC------CCcE--EeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHh
Q 017153 118 GPIAV---EKGSIVVDNSSAFRMVE------NVPL--VIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRR 186 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~~R~~~------~~~~--~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~ 186 (376)
...+. ..|..||+..+....+. ..++ .+|- .+..+.. ....++..+++.... .-.+.+|++.
T Consensus 78 l~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~-~~~~~~~-----~~~~l~~~~~~~~~~-~~~v~~l~~~ 150 (266)
T PLN02688 78 LTELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPN-TPCLVGE-----AASVMSLGPAATADD-RDLVATLFGA 150 (266)
T ss_pred HHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCC-cHHHHhC-----ceEEEEeCCCCCHHH-HHHHHHHHHh
Confidence 66553 35677888766553221 0022 1232 2222221 012344455555444 3457788887
Q ss_pred CCCcEEE-----EEEEccccccChHh
Q 017153 187 AKVTRMV-----VSTYQAASGAGAAA 207 (376)
Q Consensus 187 ~~i~~v~-----v~t~~gvSGaGr~~ 207 (376)
+|- -.. ++...+.+|.|..-
T Consensus 151 ~G~-~~~~~e~~~d~~~~~~g~g~a~ 175 (266)
T PLN02688 151 VGK-IWVVDEKLLDAVTGLSGSGPAY 175 (266)
T ss_pred CCC-EEEeCHHHcchhHhhhcCHHHH
Confidence 663 222 23445677776553
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0051 Score=58.88 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=95.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCce--eeecCcceEEeecCccC-CCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQ--LSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~~--~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~ 115 (376)
+||+++|+ |..|+.+++-|.+++ .+..++. +..++ ..+. +.... +... ..+... ...+|+||+|.......
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~-~e~~~~l~~~~-g~~~-~~~~~~~~~~advv~LavKPq~~~ 76 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEII-VTNRS-EEKRAALAAEY-GVVT-TTDNQEAVEEADVVFLAVKPQDLE 76 (266)
T ss_pred ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEE-EeCCC-HHHHHHHHHHc-CCcc-cCcHHHHHhhCCEEEEEeChHhHH
Confidence 78999999 999999999888874 2333443 33332 2221 11110 1111 222222 36799999999998888
Q ss_pred hhHHHHHh--CCCeEEEcCCCCCCCC------CCc--EEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHH
Q 017153 116 KFGPIAVE--KGSIVVDNSSAFRMVE------NVP--LVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (376)
Q Consensus 116 ~~~~~~~~--~G~~VIDlS~~~R~~~------~~~--~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~ 185 (376)
+..+++.. .+..||+..+..+.+. +.+ =++|-.+-.--+. -.-+..+..|+......+.. |++
T Consensus 77 ~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g------~t~i~~~~~~~~~~~~~v~~-l~~ 149 (266)
T COG0345 77 EVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAG------VTAISANANVSEEDKAFVEA-LLS 149 (266)
T ss_pred HHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCc------ceeeecCccCCHHHHHHHHH-HHH
Confidence 88888763 6788999888776432 112 2456554332221 13455668888777655443 344
Q ss_pred hCC----CcEEEEEEEccccccChH
Q 017153 186 RAK----VTRMVVSTYQAASGAGAA 206 (376)
Q Consensus 186 ~~~----i~~v~v~t~~gvSGaGr~ 206 (376)
.+| |++-.+++.+++||.|-.
T Consensus 150 ~~G~v~~v~E~~~da~TaisGSgPA 174 (266)
T COG0345 150 AVGKVVEVEESLMDAVTALSGSGPA 174 (266)
T ss_pred hcCCeEEechHHhhHHHHHhcCCHH
Confidence 444 345568999999999854
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0053 Score=59.74 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=55.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC------c------ceEEeecCcc-CCCCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD------K------AYTVEELTED-SFDGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~------~------~~~v~~~~~~-~~~~~DvVf 106 (376)
|||+|+|+ |.+|..+...|...+| ++.++......-+.+...+ . ..... .+++ ...++|+||
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~vi 76 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGH---DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEALADADLIL 76 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHHHhCCCEEE
Confidence 68999998 9999999999987644 4544432111101111000 0 11111 1222 246899999
Q ss_pred EcCCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
+|++.....+..+.+. ..+..|||++..+
T Consensus 77 ~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 77 VAVPSQALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred EeCCHHHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 9999976666655554 3577899998554
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0041 Score=53.78 Aligned_cols=71 Identities=20% Similarity=0.384 Sum_probs=46.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeee------cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~------~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
|||+|+||+|.+|..++-.|...+. .-|++.+-... ..|..... ......+..-+.+++.++|+|+.+.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 6999999999999999998887632 34566554331 11211110 112334444446678999999998765
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.022 Score=55.80 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=43.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce----ee--e----cCcceEEee-cCccCCCCCcEEEEc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ----LS--F----QDKAYTVEE-LTEDSFDGVDIALFS 108 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~----~~--~----~~~~~~v~~-~~~~~~~~~DvVf~a 108 (376)
|||+|+|+||++|..++..|...++ ..++.++.......+. .. . ......+.. .+.+++.++|+||.|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEe
Confidence 6899999999999999999988733 2366665432211111 11 0 111122322 234457899999999
Q ss_pred CCC
Q 017153 109 AGG 111 (376)
Q Consensus 109 ~~~ 111 (376)
.+.
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 874
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0059 Score=52.76 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=54.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec-Ccc-eEEeecCccC-CCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-DKA-YTVEELTEDS-FDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~-~~~-~~v~~~~~~~-~~~~DvVf~a~~~~~s 114 (376)
..+|+|+|+ |.+|+.+++.|..+ ...++. +.+++. ..+.+... ... +.....+..+ +.++|+|+.|+|....
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~--g~~~v~-v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAEL--GAAKIV-IVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC--CCCEEE-EEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 478999998 99999999999876 323444 333321 11111110 000 0111112222 5789999999999764
Q ss_pred ----hhhHHHHHhCCCeEEEcCCC
Q 017153 115 ----KKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 115 ----~~~~~~~~~~G~~VIDlS~~ 134 (376)
..........|..|+|++..
T Consensus 95 ~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 95 PGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCHHHcCCCCEEEEcCcC
Confidence 22223345678999999764
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.025 Score=56.56 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|||.|.|+|||+|+.|++.|.+++| ++..+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH---YIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC---EEEEEE
Confidence 468999999999999999999988744 666554
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.014 Score=57.58 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=55.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC-----CCCeEEEEEecCCC-----CCceeee----cC-cceE---EeecCccCC--
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD-----FPYRSIKMLASKRS-----AGKQLSF----QD-KAYT---VEELTEDSF-- 99 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~-----~p~~~l~~v~s~~~-----~g~~~~~----~~-~~~~---v~~~~~~~~-- 99 (376)
|||+|+|+ |.||+.++++|.++. ...++++++++++. .|-.+.. .. ..+. ....+.+++
T Consensus 1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 58999999 999999999987631 13578888765431 1111100 00 0010 011111211
Q ss_pred CCCcEEEEcCCCch----hhhhHHHHHhCCCeEEEcC
Q 017153 100 DGVDIALFSAGGSI----SKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 100 ~~~DvVf~a~~~~~----s~~~~~~~~~~G~~VIDlS 132 (376)
.++|++++|++... ...+.++++++|+-||-.+
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaN 116 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTAN 116 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCC
Confidence 47899999997532 4456688899999999544
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0046 Score=61.41 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=57.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcC----C
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSA----G 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~----~ 110 (376)
+++||||+|+ |+ |+..++.+.+. | .++++++.+++.. .+.++... ++... .+.++ +.+.|+++.++ |
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~--~~~~eLvaV~d~~~erA~~~A~~~-gi~~y-~~~eell~d~Di~~V~ipt~~P 75 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAA--PERFELAGILAQGSERSRALAHRL-GVPLY-CEVEELPDDIDIACVVVRSAIV 75 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhC--CCCcEEEEEEcCCHHHHHHHHHHh-CCCcc-CCHHHHhcCCCEEEEEeCCCCC
Confidence 3689999998 76 88899998876 6 8999999876532 12222110 12221 12222 34556555554 5
Q ss_pred CchhhhhHHHHHhCCCeEE
Q 017153 111 GSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VI 129 (376)
+....+++.+++++|+.|+
T Consensus 76 ~~~H~e~a~~aL~aGkHVL 94 (343)
T TIGR01761 76 GGQGSALARALLARGIHVL 94 (343)
T ss_pred CccHHHHHHHHHhCCCeEE
Confidence 5688899999999999988
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.026 Score=54.98 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=62.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|+|+|.+|.+|+-+.++|.++ ..++....++.. ++.+ ...+|+||.|+|... ..
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~---gatVtv~~~~t~-----------------~l~e~~~~ADIVIsavg~~~--~v 216 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQA---HCSVTVVHSRST-----------------DAKALCRQADIVVAAVGRPR--LI 216 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEECCCCC-----------------CHHHHHhcCCEEEEecCChh--cc
Confidence 489999999889999999999875 346654433211 1222 367999999998753 23
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
-+...+.|+.|||.|-.+-.+++-.-.+-.++.+...
T Consensus 217 ~~~~ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~~~ 253 (301)
T PRK14194 217 DADWLKPGAVVIDVGINRIDDDGRSRLVGDVDFDSAL 253 (301)
T ss_pred cHhhccCCcEEEEecccccCCCCCcceecccchHHHH
Confidence 3445788999999986642111111245566766655
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.054 Score=52.38 Aligned_cols=138 Identities=14% Similarity=0.134 Sum_probs=82.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc-----------eeeecC----------cceEEeecCcc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK-----------QLSFQD----------KAYTVEELTED 97 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~-----------~~~~~~----------~~~~v~~~~~~ 97 (376)
.||||+|+ |..|..+...++.++| +++.+... +...+ ....+. ..+.+. .+.+
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~---~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~~~~ 80 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGV---DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT-TDLG 80 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee-CCHH
Confidence 58999999 9999999999888644 55544321 11111 000000 112222 2334
Q ss_pred CCCCCcEEEEcCCCchhhhhH-----HHHH-hCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCCC
Q 017153 98 SFDGVDIALFSAGGSISKKFG-----PIAV-EKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s~~~~-----~~~~-~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~~ 163 (376)
.+.++|+||.|.+.+...+.. +++. +.++.++++|+.+...+ +--+++--+|+..+.+ -.
T Consensus 81 ~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~------lv 154 (286)
T PRK07819 81 DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLP------LV 154 (286)
T ss_pred HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCc------eE
Confidence 568999999999987764433 2444 67899999999986432 1124555566544332 24
Q ss_pred cEEEcCCchHHHHHHHHhHHHH-hCCC
Q 017153 164 ALIANPNCSTIICLMAATPLHR-RAKV 189 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~pL~~-~~~i 189 (376)
.+|..+++.+..+.. +.++.. ..+-
T Consensus 155 Elv~~~~T~~~~~~~-~~~~~~~~lgk 180 (286)
T PRK07819 155 ELVPTLVTSEATVAR-AEEFASDVLGK 180 (286)
T ss_pred EEeCCCCCCHHHHHH-HHHHHHHhCCC
Confidence 577777777666555 556644 3443
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.033 Score=49.73 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=66.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..||.|+|+.+++|..+++.|.++ ..++. +.+++. .++ .+.+.++|+||.|++... -+-
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~---g~~V~-v~~r~~--------------~~l-~~~l~~aDiVIsat~~~~--ii~ 102 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR---NATVT-VCHSKT--------------KNL-KEHTKQADIVIVAVGKPG--LVK 102 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC---CCEEE-EEECCc--------------hhH-HHHHhhCCEEEEcCCCCc--eec
Confidence 589999999445799899999886 23544 333321 010 223578999999998753 233
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCch
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~ 172 (376)
+...+.|..+||++-+.-.+....-....++.+.++.. ...+...||=+
T Consensus 103 ~~~~~~~~viIDla~prdvd~~~~~~~G~~d~~~~~~~-----~~~~~~~pggv 151 (168)
T cd01080 103 GDMVKPGAVVIDVGINRVPDKSGGKLVGDVDFESAKEK-----ASAITPVPGGV 151 (168)
T ss_pred HHHccCCeEEEEccCCCcccccCCCeeCCcCHHHHHhh-----ccCcCCCCCcC
Confidence 34456789999999875222101234566777766632 23455555543
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0095 Score=64.24 Aligned_cols=89 Identities=13% Similarity=0.160 Sum_probs=57.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C-CCCcEEEEcCCCchhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSISK 115 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~-~~~DvVf~a~~~~~s~ 115 (376)
.++||+|||. |.+|+.+.+.|.+.+ .++.++. ++.. ...... ..+... .+.++ . .++|+||+|+|.....
T Consensus 51 ~~~kIgIIG~-G~mG~slA~~L~~~G---~~V~~~d-r~~~-~~~A~~-~Gv~~~-~d~~e~~~~~aDvViLavP~~~~~ 122 (667)
T PLN02712 51 TQLKIAIIGF-GNYGQFLAKTLISQG---HTVLAHS-RSDH-SLAARS-LGVSFF-LDPHDLCERHPDVILLCTSIISTE 122 (667)
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCC---CEEEEEe-CCHH-HHHHHH-cCCEEe-CCHHHHhhcCCCEEEEcCCHHHHH
Confidence 4689999996 999999999998763 4665543 3211 111100 011111 12222 2 4689999999998877
Q ss_pred hhHHHHH----hCCCeEEEcCCC
Q 017153 116 KFGPIAV----EKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~----~~G~~VIDlS~~ 134 (376)
+.++.+. ..|+.|+|.++-
T Consensus 123 ~vl~~l~~~~l~~g~iVvDv~Sv 145 (667)
T PLN02712 123 NVLKSLPLQRLKRNTLFVDVLSV 145 (667)
T ss_pred HHHHhhhhhcCCCCeEEEECCCC
Confidence 7776553 358899999865
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.009 Score=64.42 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=57.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CC-CCcEEEEcCCCchhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FD-GVDIALFSAGGSISK 115 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~-~~DvVf~a~~~~~s~ 115 (376)
+++||+|||. |.+|+.+.+.|.+.+ .++.+. +++...+..... ..... .+.++ .. .+|+||+|+|.....
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G---~~V~~~-dr~~~~~~a~~~--Gv~~~-~~~~el~~~~aDvVILavP~~~~~ 439 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQG---HTVLAY-SRSDYSDEAQKL--GVSYF-SDADDLCEEHPEVILLCTSILSTE 439 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCc---CEEEEE-ECChHHHHHHHc--CCeEe-CCHHHHHhcCCCEEEECCChHHHH
Confidence 3689999997 999999999998753 466544 333211110001 11111 12222 22 589999999998887
Q ss_pred hhHHHHH----hCCCeEEEcCCC
Q 017153 116 KFGPIAV----EKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~----~~G~~VIDlS~~ 134 (376)
+.+..+. +.|+.|+|.++.
T Consensus 440 ~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 440 KVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHHHhcCCCCcEEEECCCc
Confidence 7777554 358899999876
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.041 Score=53.70 Aligned_cols=93 Identities=15% Similarity=0.321 Sum_probs=53.3
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-----CCCceeeecCcceEE---eec-CccCCCCCcEEEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----SAGKQLSFQDKAYTV---EEL-TEDSFDGVDIALF 107 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-----~~g~~~~~~~~~~~v---~~~-~~~~~~~~DvVf~ 107 (376)
+++|||+|+|+ |.+|..+...|.+.+| ++..+.... ..|..+.....+..+ ... +++....+|+||+
T Consensus 3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~---~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil 78 (313)
T PRK06249 3 SETPRIGIIGT-GAIGGFYGAMLARAGF---DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLV 78 (313)
T ss_pred CcCcEEEEECC-CHHHHHHHHHHHHCCC---eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEE
Confidence 45689999998 9999999999987643 555443221 012111110011111 111 1223457899999
Q ss_pred cCCCchhhhhHHHHH---hCCCeEEEcCC
Q 017153 108 SAGGSISKKFGPIAV---EKGSIVVDNSS 133 (376)
Q Consensus 108 a~~~~~s~~~~~~~~---~~G~~VIDlS~ 133 (376)
|++.....+..+.+. ..+..||.+-.
T Consensus 79 avK~~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 79 GLKTTANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred EecCCChHhHHHHHhhhcCCCCEEEEecC
Confidence 999887766555443 34556665543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0086 Score=51.28 Aligned_cols=90 Identities=14% Similarity=0.261 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--cCcceEEeecCc--cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--QDKAYTVEELTE--DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--~~~~~~v~~~~~--~~~~~~DvVf~a~~~~~ 113 (376)
..||.|+|| |-+|+.++..|... ..-++..+ +|+. ..+.+.. .+..+.+..++. +.+.++|+||.|+|.+.
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~--g~~~i~i~-nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL--GAKEITIV-NRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT--TSSEEEEE-ESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc--CCCEEEEE-ECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 489999999 99999999999887 33345544 3331 1112211 122334444331 12468999999999876
Q ss_pred hhhhHHHHHhCC----CeEEEcCC
Q 017153 114 SKKFGPIAVEKG----SIVVDNSS 133 (376)
Q Consensus 114 s~~~~~~~~~~G----~~VIDlS~ 133 (376)
. ...+...+.. ..|+|++-
T Consensus 88 ~-~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 88 P-IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp T-SSTHHHHTTTCHHCSEEEES-S
T ss_pred c-ccCHHHHHHHHhhhhceecccc
Confidence 6 3334444544 38999974
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.021 Score=54.27 Aligned_cols=151 Identities=11% Similarity=0.161 Sum_probs=80.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|+|+ |..|..+++.|.+.+... -++. +.+++. .+ . ..... .++. ...++|+||+|++.....++
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~-~~-~-----~~~~~-~~~~~~~~~~D~Vilavkp~~~~~v 73 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIY-YHTPSK-KN-T-----PFVYL-QSNEELAKTCDIIVLAVKPDLAGKV 73 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEE-EECCCh-hc-C-----CeEEe-CChHHHHHhCCEEEEEeCHHHHHHH
Confidence 78999998 999999999998764221 2343 333321 11 0 11111 1222 24688999999999888888
Q ss_pred HHHHHh--CCCeEEEcCCCCCCCC-------C--CcEEeeccCHHhhcCcccCCCCCcEEE-cCCchHHHHHHHHhHHHH
Q 017153 118 GPIAVE--KGSIVVDNSSAFRMVE-------N--VPLVIPEVNPEAMSGIKVGMGKGALIA-NPNCSTIICLMAATPLHR 185 (376)
Q Consensus 118 ~~~~~~--~G~~VIDlS~~~R~~~-------~--~~~~lpevN~~~i~~~~~~~~~~~iVa-~PgC~~ta~~l~L~pL~~ 185 (376)
.+.+.. .+..||...+....+. . +.-.+|... ..+.. +..++. ..++...... .+.-|++
T Consensus 74 l~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p-~~~g~------g~t~i~~~~~~~~~~~~-~v~~l~~ 145 (260)
T PTZ00431 74 LLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTP-SLVGQ------GSLVFCANNNVDSTDKK-KVIDIFS 145 (260)
T ss_pred HHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCch-hHhcc------eeEEEEeCCCCCHHHHH-HHHHHHH
Confidence 877653 1223444444443211 0 012344332 22321 223332 2344334433 3445555
Q ss_pred hCCC----cEEEEEEEccccccChHhH
Q 017153 186 RAKV----TRMVVSTYQAASGAGAAAM 208 (376)
Q Consensus 186 ~~~i----~~v~v~t~~gvSGaGr~~~ 208 (376)
..|. ++=.+++++++||.|-.-.
T Consensus 146 ~~G~~~~v~E~~~d~~ta~~gsgPA~~ 172 (260)
T PTZ00431 146 ACGIIQEIKEKDMDIATAISGCGPAYV 172 (260)
T ss_pred hCCcEEEEChHHcchhhhhcCCHHHHH
Confidence 5553 2225788899999975533
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.023 Score=56.72 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCCEEEEE----CcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--------e-cCcceEEeecCc---cC-C-
Q 017153 38 SAPSVAVV----GVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------F-QDKAYTVEELTE---DS-F- 99 (376)
Q Consensus 38 ~~irVaIv----GaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--------~-~~~~~~v~~~~~---~~-~- 99 (376)
+++||.|+ |+||++|+.|++.|.+.+| ++.++.........+. . ....+.+...|. +. +
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~ 127 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVA 127 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhc
Confidence 35799999 9999999999999988644 6666653322111110 0 001122222121 11 2
Q ss_pred -CCCcEEEEcCCCch--hhhhHHHHHhCCCe-EEEcCCC
Q 017153 100 -DGVDIALFSAGGSI--SKKFGPIAVEKGSI-VVDNSSA 134 (376)
Q Consensus 100 -~~~DvVf~a~~~~~--s~~~~~~~~~~G~~-VIDlS~~ 134 (376)
.++|+||.+.+... ...+.+.+.+.|++ +|=+|+.
T Consensus 128 ~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~ 166 (378)
T PLN00016 128 GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSA 166 (378)
T ss_pred cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccH
Confidence 47899999876543 34445555567874 6656654
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.018 Score=56.84 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=42.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCCC----CCceeeec------CcceEEeecC-ccCCCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQ------DKAYTVEELT-EDSFDGVD 103 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~~----~g~~~~~~------~~~~~v~~~~-~~~~~~~D 103 (376)
++||+|+||+|++|..++..|..++. ...+++++.-... .|..+... ..++.+. .+ .+++.++|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~-~~~~~~l~~aD 80 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVAT-TDPEEAFKDVD 80 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceec-CCHHHHhCCCC
Confidence 47999999999999999998887621 1137776643221 22221111 0112121 12 24568899
Q ss_pred EEEEcCCC
Q 017153 104 IALFSAGG 111 (376)
Q Consensus 104 vVf~a~~~ 111 (376)
+||.+.+.
T Consensus 81 iVI~tAG~ 88 (325)
T cd01336 81 VAILVGAM 88 (325)
T ss_pred EEEEeCCc
Confidence 99888765
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.019 Score=56.45 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=55.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCC-------CCeEEEEEecCCCCCceeeecCcc-eEE-eec----CccC--CCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF-------PYRSIKMLASKRSAGKQLSFQDKA-YTV-EEL----TEDS--FDGV 102 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~-------p~~~l~~v~s~~~~g~~~~~~~~~-~~v-~~~----~~~~--~~~~ 102 (376)
+++||+|+|. |.||+.++++|.+++. -.++++.++.++-.-.. .....+ ..+ .+. ..+. -.+.
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-DLDLLNAEVWTTDGALSLGDEVLLDEDI 79 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-cccccchhhheecccccccHhhhccccC
Confidence 5799999998 9999999999987521 24666666544311100 011011 001 111 0111 1478
Q ss_pred cEEEEcCCC--chhh--hhHHHHHhCCCeEEE
Q 017153 103 DIALFSAGG--SISK--KFGPIAVEKGSIVVD 130 (376)
Q Consensus 103 DvVf~a~~~--~~s~--~~~~~~~~~G~~VID 130 (376)
|+|+.+++. +.+. ++..++++.|..||-
T Consensus 80 dvvve~~~~d~~~~~~~~~~~~al~~GkhVVT 111 (333)
T COG0460 80 DVVVELVGGDVEPAEPADLYLKALENGKHVVT 111 (333)
T ss_pred CEEEecCcccCCchhhHHHHHHHHHcCCeEEC
Confidence 999999887 3344 667788899999993
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.021 Score=56.00 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=43.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce---eee---cCcceEEeecC---ccC----CCCCcE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ---LSF---QDKAYTVEELT---EDS----FDGVDI 104 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~---~~~---~~~~~~v~~~~---~~~----~~~~Dv 104 (376)
++++|.|-|||||+|..+++.|++++| ++.+.+.+....+. +.. ....+.+...| +.. +++||.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY---~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY---TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC---EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCE
Confidence 468999999999999999999999854 66665532222111 111 11224433222 222 479999
Q ss_pred EEEcC
Q 017153 105 ALFSA 109 (376)
Q Consensus 105 Vf~a~ 109 (376)
||.+.
T Consensus 82 VfH~A 86 (327)
T KOG1502|consen 82 VFHTA 86 (327)
T ss_pred EEEeC
Confidence 99864
|
|
| >KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.013 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.9
Q ss_pred EEEEEEechHHhhHHHHHHHHHHhc
Q 017153 351 LDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 351 ~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+.+.+.-+|..-||||..+.++++.
T Consensus 331 ~kfv~L~hnt~~gaag~G~l~aev~ 355 (361)
T KOG4777|consen 331 GKFVVLDHNTCGGAAGKGALLAEVQ 355 (361)
T ss_pred cceEEEEeeeehhhhcchhHHHHHH
Confidence 5677888999999999999999875
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.035 Score=55.96 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+||.|.|+||++|+.+++.|.+++ .+++++.
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~ 91 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVA 91 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 5799999999999999999998864 3666554
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.052 Score=50.84 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.||||++|+.+++.|.++++ ++.++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~~ 48 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF---AVKAGV 48 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC---EEEEEe
Confidence 47999999999999999999987633 555544
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.024 Score=56.88 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=58.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceee----e-------cC-------------cceEEe-e
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLS----F-------QD-------------KAYTVE-E 93 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~----~-------~~-------------~~~~v~-~ 93 (376)
+||+|+|+||-+|..-++.+.++ | .+++++++..+...+... + .. .++.+. .
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~--p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G 79 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRN--PDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAG 79 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhC--ccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEC
Confidence 68999999999999999999876 5 689998874333221110 0 00 011111 1
Q ss_pred cC-cc---CCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 94 LT-ED---SFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 94 ~~-~~---~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
.+ .. ...++|+|+.|.+.....+..-.++++|..|.
T Consensus 80 ~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va 119 (385)
T PRK05447 80 EEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA 119 (385)
T ss_pred hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence 11 11 12479999999998877777777789998877
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.02 Score=54.49 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=52.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC---CCCCceeee-cCcceEEeecCccCCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---RSAGKQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~---~~~g~~~~~-~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
-.|||+||||-+|..+.|.|..+ +...++..-.+. ++.-..+.. -+.. .+..++.+.....+++|.|+- ....
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~-~~~~~ll~r~aea~~rq~l~~l~e~~~~~-~i~s~d~~~~~e~i~v~vAs~-~~g~ 244 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPK-VGVKELLLRDAEARNRQRLTLLQEELGRG-KIMSLDYALPQEDILVWVASM-PKGV 244 (351)
T ss_pred CeEEEecCCchHHHHHHHHhccc-cCEEEEecccHHhhhhhhhhhcccccCCC-eeeeccccccccceEEEEeec-CCCc
Confidence 57999999999999999999876 122232221111 111111111 1111 123334444445555555543 3345
Q ss_pred hhHHHHHhCCCeEEEcCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~ 134 (376)
+..++.++.||.|||-.-+
T Consensus 245 ~I~pq~lkpg~~ivD~g~P 263 (351)
T COG5322 245 EIFPQHLKPGCLIVDGGYP 263 (351)
T ss_pred eechhhccCCeEEEcCCcC
Confidence 6788999999999996543
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.013 Score=58.41 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=55.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe-ecCc-cCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTE-DSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~-~~~~-~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.||+|+|. |.+|..+.+.|..+++ .+.+ ...+..........+..+.-. ..+. +...++|+||+|+|.....++
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~-~v~i--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~v 76 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP-DVFI--IGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAAL 76 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC-CeEE--EEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHH
Confidence 36999998 9999999999987643 3333 221111111000000001000 0111 224689999999999888887
Q ss_pred HHHHHh----CCCeEEEcCCC
Q 017153 118 GPIAVE----KGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~~----~G~~VIDlS~~ 134 (376)
..++.+ .|+.|.|.++-
T Consensus 77 l~~l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 77 LAELADLELKPGVIVTDVGSV 97 (359)
T ss_pred HHHHhhcCCCCCcEEEeCccc
Confidence 777653 47889898875
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.051 Score=45.39 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=49.6
Q ss_pred CEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe-ecCccCCCCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~-~~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
.+|||+|+| +..|..+++.|.++ ..++..+..+. +.+ ....+. .+. +.-..+|+++.|+|.....
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~---G~~v~~Vnp~~---~~i----~G~~~y~sl~-e~p~~iDlavv~~~~~~~~ 69 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA---GYEVYPVNPKG---GEI----LGIKCYPSLA-EIPEPIDLAVVCVPPDKVP 69 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT---T-EEEEESTTC---SEE----TTEE-BSSGG-GCSST-SEEEE-S-HHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC---CCEEEEECCCc---eEE----CcEEeecccc-CCCCCCCEEEEEcCHHHHH
Confidence 379999987 77899999999885 35777665322 111 112332 222 2236889999999999999
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
++.+++.+.|++-+
T Consensus 70 ~~v~~~~~~g~~~v 83 (116)
T PF13380_consen 70 EIVDEAAALGVKAV 83 (116)
T ss_dssp HHHHHHHHHT-SEE
T ss_pred HHHHHHHHcCCCEE
Confidence 99999998888733
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.038 Score=54.30 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=26.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.|.|||||+|+.|++.|.++ ...++.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~ 33 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILET--TDWEVYGMD 33 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEe
Confidence 68999999999999999999865 334676664
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.012 Score=57.19 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=55.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc----CCCCCcEEEEcCCCchh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED----SFDGVDIALFSAGGSIS 114 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~----~~~~~DvVf~a~~~~~s 114 (376)
|||+|+|. |..|..+.+.|.+++ .++.+. +++.. -+.+...+ .... .+++ .+..+|+||+|+|....
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g---~~V~~~-dr~~~~~~~l~~~g--~~~~-~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRG---HDCVGY-DHDQDAVKAMKEDR--TTGV-ANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCC---CEEEEE-ECCHHHHHHHHHcC--Cccc-CCHHHHHhhcCCCCEEEEEcCchHH
Confidence 48999998 999999999998864 456543 33211 11111111 1111 1111 23568999999999876
Q ss_pred hhhHHHHH---hCCCeEEEcCCCC
Q 017153 115 KKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
.+....+. ..|..|||.|...
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCC
Confidence 66665553 4688899998765
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.012 Score=57.35 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce-eeecCcceEEeecC--ccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~-~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~s~ 115 (376)
..||+|+|+ |.+|+.+++.|... . .++.++. ++..... ....+ .....++ .+.+.++|+||.|+|.....
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~--G-a~V~v~~-r~~~~~~~~~~~G--~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKAL--G-ANVTVGA-RKSAHLARITEMG--LSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC--C-CEEEEEE-CCHHHHHHHHHcC--CeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 479999998 99999999999876 3 4665443 3311110 00001 1111111 22347899999999876432
Q ss_pred hhHHHHHhCCCeEEEcCCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~~ 135 (376)
+-.-.....|..|||+++.-
T Consensus 225 ~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred HHHHHcCCCCcEEEEEccCC
Confidence 21112245789999999864
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.017 Score=56.48 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecC--ccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~s~ 115 (376)
.++|+|+|+ |.+|+.+++.|..+ ...++. +.+++.. ...+...... .+...+ .+.+.++|+||+|++.....
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~~--g~~~V~-v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~~~ 252 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAAK--GVAEIT-IANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPHYA 252 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHHc--CCCEEE-EEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCchH
Confidence 489999998 99999999998874 223443 4443321 1111111001 121111 12246799999999987764
Q ss_pred hhHHHHHh----CCCeEEEcCCC
Q 017153 116 KFGPIAVE----KGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~~----~G~~VIDlS~~ 134 (376)
+....+.+ .+..+||++-+
T Consensus 253 ~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 253 KIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred HHHHHHHhhCCCCCeEEEEeCCC
Confidence 43443332 36789999965
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.015 Score=59.08 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=52.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec-------C-----------cceEEeecCcc-CCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-------D-----------KAYTVEELTED-SFD 100 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-------~-----------~~~~v~~~~~~-~~~ 100 (376)
|||+|+|. |++|..+...|.+++| ++..+......-+.+..+ + ..+... .+.. .+.
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~---~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH---EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYEDAIR 75 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC---eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHHHHh
Confidence 58999998 9999999999988654 555443221111111100 0 012222 1222 357
Q ss_pred CCcEEEEcCCCchh----------hhhHHHH---HhCCCeEEEcCC
Q 017153 101 GVDIALFSAGGSIS----------KKFGPIA---VEKGSIVVDNSS 133 (376)
Q Consensus 101 ~~DvVf~a~~~~~s----------~~~~~~~---~~~G~~VIDlS~ 133 (376)
++|+||.|+|+... ......+ +..|..|||.|.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 89999999997642 2222222 356888999874
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.014 Score=57.31 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=56.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec--------Ccce--EEee-cCc-cCCCCCcEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--------DKAY--TVEE-LTE-DSFDGVDIAL 106 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~--------~~~~--~v~~-~~~-~~~~~~DvVf 106 (376)
+|||+|+|+ |.+|..+...|...+| ++..+..+...-+.+... +..+ .+.. .++ +...++|+||
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~---~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV---PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAV 79 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEE
Confidence 479999998 9999999999987644 454443221111111100 1000 0111 122 2246899999
Q ss_pred EcCCCchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 107 FSAGGSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+|++.....+..+.+ ..++.+||++.-+
T Consensus 80 ~~v~~~~~~~v~~~l-~~~~~vi~~~~Gi 107 (328)
T PRK14618 80 VAVPSKALRETLAGL-PRALGYVSCAKGL 107 (328)
T ss_pred EECchHHHHHHHHhc-CcCCEEEEEeecc
Confidence 999999776665543 4678899888754
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.012 Score=57.04 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceee-ecCcceEEeecCccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~-~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
..+|+|+|+ |.+|+.+++.|...+ .++.+. +++... .... .+.......++ .+.+.++|+||.|+|...-.+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G---~~V~v~-~R~~~~~~~~~~~g~~~~~~~~l-~~~l~~aDiVint~P~~ii~~ 224 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALG---ARVFVG-ARSSADLARITEMGLIPFPLNKL-EEKVAEIDIVINTIPALVLTA 224 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCC---CEEEEE-eCCHHHHHHHHHCCCeeecHHHH-HHHhccCCEEEECCChHHhCH
Confidence 379999999 999999999998763 365544 332210 0000 01011111111 123478999999999865322
Q ss_pred hHHHHHhCCCeEEEcCCCC
Q 017153 117 FGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~ 135 (376)
..-...+.++.+||+++.-
T Consensus 225 ~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHhcCCCCeEEEEeCcCC
Confidence 2222345689999999864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.026 Score=56.19 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-------CCCeEEEEEecCCCC-----Cceeee----cCcceEE---eecCccCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSA-----GKQLSF----QDKAYTV---EELTEDSF 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-------~p~~~l~~v~s~~~~-----g~~~~~----~~~~~~v---~~~~~~~~ 99 (376)
+++|+|+|. |.||+.++++|.++. --+++++.++.++.. |-.+.. ....... ...+++++
T Consensus 2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 589999998 999999999986541 024677776543211 111000 0000000 01111111
Q ss_pred ----CCCcEEEEcCCC-----chhhhhHHHHHhCCCeEEE
Q 017153 100 ----DGVDIALFSAGG-----SISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 100 ----~~~DvVf~a~~~-----~~s~~~~~~~~~~G~~VID 130 (376)
.+.|||++|+++ +.+..+.++++++|+.||-
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVT 120 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVA 120 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEc
Confidence 157999999875 4577888899999999994
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.014 Score=59.46 Aligned_cols=89 Identities=13% Similarity=0.194 Sum_probs=52.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC------------------cceEEeecCccCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD------------------KAYTVEELTEDSFD 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~------------------~~~~v~~~~~~~~~ 100 (376)
++||+|+|. ||+|..+...|.+++| ++..+......-..+..+. ..+... ....
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~---~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~----~~~~ 74 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK---QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT----TTPE 74 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC---EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee----cccc
Confidence 479999998 9999999999998744 5555432111000111000 001111 1234
Q ss_pred CCcEEEEcCCCc----------hhhhhHHH---HHhCCCeEEEcCCCC
Q 017153 101 GVDIALFSAGGS----------ISKKFGPI---AVEKGSIVVDNSSAF 135 (376)
Q Consensus 101 ~~DvVf~a~~~~----------~s~~~~~~---~~~~G~~VIDlS~~~ 135 (376)
++|++|.|+|.. ...+.... .+..|..||+.|.-.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 799999999984 22222222 235688899988743
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.071 Score=57.72 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=53.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecC-c---cCCCCCcEEEEcCCCch
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELT-E---DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~-~---~~~~~~DvVf~a~~~~~ 113 (376)
|||.|.|+||++|+.|++.|.+++| ++.++...... .. . ..+.+. ++. + +.+.++|+||.+.+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ldr~~~~--~~-~--~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIAQHPHD--AL-D--PRVDYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEeCChhh--cc-c--CCceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 5899999999999999999987643 66655432111 00 0 111121 111 1 12357999999886432
Q ss_pred ----------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 ----------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 ----------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+...+..+.+.|+++|-+|+..
T Consensus 73 ~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~~ 104 (699)
T PRK12320 73 SAPGGVGITGLAHVANAAARAGARLLFVSQAA 104 (699)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 2223344556788988888763
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.14 Score=49.01 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=78.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc----------eeeecC-----------cceEEeecCcc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK----------QLSFQD-----------KAYTVEELTED 97 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~----------~~~~~~-----------~~~~v~~~~~~ 97 (376)
.||+|+|+ |++|..+...|..+++ ++..+... +...+ .+...+ ..+.+. .+.+
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~---~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~ 78 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGY---DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLD 78 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCC---ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 58999999 9999999999988744 55544211 11100 000000 012222 1233
Q ss_pred CCCCCcEEEEcCCCchh--hhhHHHHH---hCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCCCc
Q 017153 98 SFDGVDIALFSAGGSIS--KKFGPIAV---EKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGKGA 164 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s--~~~~~~~~---~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~~~ 164 (376)
.+.++|+||.|.+.... .+...++. ..++.++.+++...... +--.++-..|+..+.. ...
T Consensus 79 ~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~------~ve 152 (282)
T PRK05808 79 DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMK------LVE 152 (282)
T ss_pred HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCc------cEE
Confidence 46789999999986554 44555443 35677777777765432 0113344444433332 233
Q ss_pred EEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 165 LIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 165 iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
++..+++...... .+..|.+..|...+.
T Consensus 153 v~~g~~t~~e~~~-~~~~l~~~lGk~pv~ 180 (282)
T PRK05808 153 IIRGLATSDATHE-AVEALAKKIGKTPVE 180 (282)
T ss_pred EeCCCCCCHHHHH-HHHHHHHHcCCeeEE
Confidence 5556666555544 466777776655443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.035 Score=53.36 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=54.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC-----cceEE--eec-CccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-----KAYTV--EEL-TEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~-----~~~~v--~~~-~~~~~~~~DvVf~a~~~ 111 (376)
|||+|+|+ |.+|..+...|.+.+| ++..+..+...-+.+...+ ..... ... +.....++|+||+|++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH---DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 58999998 9999999999987643 5555543111100111001 01111 111 12223689999999998
Q ss_pred chhhhhHHHHHh---CCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
....+..+.+.. .+..||.+...+
T Consensus 77 ~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 77 YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 877777666543 456777766554
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.064 Score=52.10 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=61.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CC--CcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DG--VDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~--~DvVf~a~~~~~s~ 115 (376)
+-||.|.|.||-.|..+++.|.+.+++ .+..+. ++..+..+ ..+++++ +.+++ .. +|+++.|+|.....
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~--~v~pVn-p~~~~~~v----~G~~~y~-sv~dlp~~~~~DlAvi~vp~~~v~ 79 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN--IVGGVT-PGKGGTTV----LGLPVFN-TVAEAVEATGANASVIYVPPPFAA 79 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC--EEEEEC-CCCCCCeE----eCeeccC-CHHHHhhccCCCEEEEEcCHHHHH
Confidence 579999999999999999999876443 444444 33111121 1233322 12223 33 89999999999999
Q ss_pred hhHHHHHhCCCe-EEEcCCCCC
Q 017153 116 KFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 116 ~~~~~~~~~G~~-VIDlS~~~R 136 (376)
+..+++.++|++ +|-.|+-|.
T Consensus 80 ~~l~e~~~~gvk~avI~s~Gf~ 101 (291)
T PRK05678 80 DAILEAIDAGIDLIVCITEGIP 101 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
Confidence 999999999987 455787774
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.043 Score=50.52 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=55.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeeecCcceEEe--ecCccCCCCCcEEEEcCCCc-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGS-I 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~-~ 113 (376)
..||.|+|+ |.+|..-++.|.+. ..++.+++ ++.... .+... ..+.+. +....++.++|+||.|++.. .
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~---ga~VtVvs-p~~~~~l~~l~~~-~~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKA---GAQLRVIA-EELESELTLLAEQ-GGITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHC---CCEEEEEc-CCCCHHHHHHHHc-CCEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 369999999 99999999998875 34565454 322111 11111 123332 33344578999999999986 6
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
.......+.+.|+.|-
T Consensus 83 n~~i~~~a~~~~ilvn 98 (205)
T TIGR01470 83 NRRVAHAARARGVPVN 98 (205)
T ss_pred HHHHHHHHHHcCCEEE
Confidence 6666667777888873
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.014 Score=56.69 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=52.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~ 116 (376)
.||+|+|. |.+|..+.+.|.+++| ++.+ .+++.. -+.+... ..... .++. ...++|+||+|+|.... .+
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~---~V~v-~d~~~~~~~~~~~~--g~~~~-~s~~~~~~~aDvVi~~vp~~~~~~~ 73 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH---QLQV-FDVNPQAVDALVDK--GATPA-ASPAQAAAGAEFVITMLPNGDLVRS 73 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC---eEEE-EcCCHHHHHHHHHc--CCccc-CCHHHHHhcCCEEEEecCCHHHHHH
Confidence 48999998 9999999999988743 5543 333211 0111111 11111 1222 24689999999999753 22
Q ss_pred hHH---H---HHhCCCeEEEcCCCC
Q 017153 117 FGP---I---AVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~---~---~~~~G~~VIDlS~~~ 135 (376)
... . ....|..+||.|.-.
T Consensus 74 vl~~~~~i~~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 74 VLFGENGVCEGLSRDALVIDMSTIH 98 (296)
T ss_pred HHcCcccHhhcCCCCCEEEECCCCC
Confidence 211 1 124678899998765
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.072 Score=51.63 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=61.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-C--CCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~--~~DvVf~a~~~~~s~ 115 (376)
+-||.|.|.||..|..+++.|...+++ +++-.+++..+..+ ..+++++ +.+++ . ++|+++.|.|.....
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~---~v~~V~p~~~~~~v----~G~~~y~-sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN---IVGGVTPGKGGTTV----LGLPVFD-SVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC---EEEEECCCCCccee----cCeeccC-CHHHHhhccCCCEEEEecCHHHHH
Confidence 578999999999999999988776443 55444443111121 1233322 12222 2 379999999999999
Q ss_pred hhHHHHHhCCCe-EEEcCCCCC
Q 017153 116 KFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 116 ~~~~~~~~~G~~-VIDlS~~~R 136 (376)
+...++.++|++ +|-+|+-|.
T Consensus 78 ~~l~e~~~~Gvk~avIis~Gf~ 99 (286)
T TIGR01019 78 DAIFEAIDAGIELIVCITEGIP 99 (286)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
Confidence 999999999987 445777773
|
ATP citrate lyases appear to form an outgroup. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.019 Score=55.69 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=53.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCC-C---CCcEEEEcCCCc-h
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSF-D---GVDIALFSAGGS-I 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~-~---~~DvVf~a~~~~-~ 113 (376)
|||+|||. |.+|..+.+.|.+++ .++.+ .+++. .-+.+... ...... +++++ . ++|+||.|+|.. .
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g---~~v~v-~dr~~~~~~~~~~~--g~~~~~-s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDG---HEVVG-YDVNQEAVDVAGKL--GITARH-SLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCC---CEEEE-EECCHHHHHHHHHC--CCeecC-CHHHHHHhCCCCCEEEEEecCchH
Confidence 47999998 999999999998763 45554 33321 11111111 111211 22222 2 379999999997 5
Q ss_pred hhhhHHHHH---hCCCeEEEcCCCC
Q 017153 114 SKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
..+....+. ..|..|||+|...
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCC
Confidence 555555443 4678899997653
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.021 Score=56.01 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=58.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeec------CcceE----Ee-ecCc-cCCCCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQ------DKAYT----VE-ELTE-DSFDGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~------~~~~~----v~-~~~~-~~~~~~DvVf 106 (376)
+||+|+|+ |-.|..|...|.+++| ++. +.+++ ..-..+... ..++. +. ..|. +.++++|+++
T Consensus 2 ~kI~ViGa-GswGTALA~~la~ng~---~V~-lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv 76 (329)
T COG0240 2 MKIAVIGA-GSWGTALAKVLARNGH---EVR-LWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIV 76 (329)
T ss_pred ceEEEEcC-ChHHHHHHHHHHhcCC---eeE-EEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEE
Confidence 78999999 9999999999998754 333 22222 100011100 01111 11 1122 2246799999
Q ss_pred EcCCCchhhhhHHHHH---hCCCeEEEcCCCCC
Q 017153 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAFR 136 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R 136 (376)
+++|+..-+++++++. ..+.++|.++--+-
T Consensus 77 ~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 77 IAVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred EECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 9999999988888763 67888998887763
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.044 Score=53.99 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=44.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCCC----CCceeeecC------cceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQD------KAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~~----~g~~~~~~~------~~~~v~~~~~~~~~~~Dv 104 (376)
++||+|+||+|.+|..++-.|..++. ...+++++--... .|....... ....+..-+.+++.++|+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 47999999999999999998876521 1236776643222 222211100 123333323456789999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.+.
T Consensus 82 vvitaG~ 88 (322)
T cd01338 82 ALLVGAK 88 (322)
T ss_pred EEEeCCC
Confidence 9988766
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.043 Score=52.88 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=48.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-ccC-C--CCCcEEEEcCCCc---
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDS-F--DGVDIALFSAGGS--- 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~~-~--~~~DvVf~a~~~~--- 112 (376)
|||.|+|++|++|+.|.+.|.++ ..++... ++.. +.+.+.+ ... + .+.|+||.|..-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~---~~~v~~~-~r~~-----------~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER---GYEVIAT-SRSD-----------LDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT---SEEEEEE-STTC-----------S-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhC---CCEEEEe-Cchh-----------cCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 79999999999999999999875 4566555 3321 0011000 001 1 2568999886431
Q ss_pred ---------------hhhhhHHHHHhCCCeEEEcCCCCCCCC
Q 017153 113 ---------------ISKKFGPIAVEKGSIVVDNSSAFRMVE 139 (376)
Q Consensus 113 ---------------~s~~~~~~~~~~G~~VIDlS~~~R~~~ 139 (376)
....+++.+.+.|+++|-+|+++=|+.
T Consensus 66 ~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 66 ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDG 107 (286)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S
T ss_pred hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcC
Confidence 112233444568999999999976654
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.017 Score=52.25 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-----cCcceEEeec-Cc----cCCCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-----QDKAYTVEEL-TE----DSFDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-----~~~~~~v~~~-~~----~~~~~~DvVf~ 107 (376)
..++.|+|+||.+|+.+++.|..+ . .++..+ +++.. .+.+.. .+..+...+. +. +.+.++|+||.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~--g-~~V~l~-~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE--G-ARVVLV-GRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--C-CEEEEE-cCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 479999999999999999999875 2 355544 44311 011100 0111111111 21 22468999999
Q ss_pred cCCCchhh-hhHHHHHhCCCeEEEcCCCC
Q 017153 108 SAGGSISK-KFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 108 a~~~~~s~-~~~~~~~~~G~~VIDlS~~~ 135 (376)
|++.+... ...+...+.+..|+|+....
T Consensus 104 at~~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 104 AGAAGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred CCCCCceechhhhcccCceeEEEEccCCC
Confidence 99987731 11122223477899987653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.095 Score=44.90 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=54.8
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC---------------CCCCceeee--------cCcceEEee----
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVEE---- 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~---------------~~~g~~~~~--------~~~~~~v~~---- 93 (376)
||.|+|+ |-+|.++++.|...+. -++..+-.. +..|++-.. ....+.+..
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv--~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV--GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC--CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 5899999 9999999999987633 344444211 112221110 011222221
Q ss_pred cCc----cCCCCCcEEEEcCCCchhhhhHH-HHHhCCCeEEEcCCC
Q 017153 94 LTE----DSFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNSSA 134 (376)
Q Consensus 94 ~~~----~~~~~~DvVf~a~~~~~s~~~~~-~~~~~G~~VIDlS~~ 134 (376)
.+. +.+.+.|+||+|+....+..... .+.+.|+.+|+....
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 22478999999999876655444 445789999987654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.058 Score=52.91 Aligned_cols=71 Identities=24% Similarity=0.447 Sum_probs=41.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCC-CCCceeeecC-c-ceEEee--c-C-ccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKR-SAGKQLSFQD-K-AYTVEE--L-T-EDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~-~~g~~~~~~~-~-~~~v~~--~-~-~~~~~~~DvVf~a~~~ 111 (376)
|||+|+||||.+|..++..|... .+. .+++++.... ..|..+.... . ...+.. . + .+++.++|+||.|.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~-~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ-LPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 68999999999999999877542 133 3455443221 1121111111 1 123332 1 2 2456789999999886
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.016 Score=55.89 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=50.0
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhhhH-
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFG- 118 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~- 118 (376)
||+|+|. |.+|..+.+.|.+++| ++.+. +++. .+.-.......... .++ +...++|+||+|+|.....+.+
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~---~V~~~-dr~~-~~~~~~~~~g~~~~-~~~~~~~~~aDivi~~vp~~~~~~~v~ 73 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY---QLHVT-TIGP-EVADELLAAGAVTA-ETARQVTEQADVIFTMVPDSPQVEEVA 73 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC---eEEEE-cCCH-HHHHHHHHCCCccc-CCHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 5899998 9999999999988644 55533 3321 11000000011111 122 2346899999999976432221
Q ss_pred ---H---HHHhCCCeEEEcCCC
Q 017153 119 ---P---IAVEKGSIVVDNSSA 134 (376)
Q Consensus 119 ---~---~~~~~G~~VIDlS~~ 134 (376)
. .....|..|||.|..
T Consensus 74 ~~~~~~~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 74 FGENGIIEGAKPGKTLVDMSSI 95 (291)
T ss_pred cCcchHhhcCCCCCEEEECCCC
Confidence 1 112457889998764
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.14 Score=47.05 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEe--ecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVE--ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|.|+|+ |-+|...++.|.+.+ .++.+++ +... ..+.. ....+.+. .+.+.++.++|+||.|++....
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~g---a~V~VIs-~~~~-~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYG---AHIVVIS-PELT-ENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEc-CCCC-HHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 479999999 999999999888763 4666553 3221 11111 00123332 2334557899999999988765
Q ss_pred hhhHHHHHhCCCeE
Q 017153 115 KKFGPIAVEKGSIV 128 (376)
Q Consensus 115 ~~~~~~~~~~G~~V 128 (376)
-+......+++..|
T Consensus 84 N~~i~~~a~~~~lv 97 (202)
T PRK06718 84 NEQVKEDLPENALF 97 (202)
T ss_pred HHHHHHHHHhCCcE
Confidence 55555555666543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.03 Score=54.37 Aligned_cols=88 Identities=14% Similarity=0.231 Sum_probs=52.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCC-C---CCcEEEEcCCCc-h
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSF-D---GVDIALFSAGGS-I 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~-~---~~DvVf~a~~~~-~ 113 (376)
|||+|+|. |..|..+.+.|.+.+ .++.+. +++. .-+.+... ...+.. +++++ . ++|+||.|+|.. .
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g---~~v~v~-dr~~~~~~~~~~~--g~~~~~-~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGG---HEVVGY-DRNPEAVEALAEE--GATGAD-SLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCC---CeEEEE-ECCHHHHHHHHHC--CCeecC-CHHHHHhhcCCCCEEEEEecCCcH
Confidence 48999998 999999999998764 355443 3321 11111111 112211 22222 2 469999999987 4
Q ss_pred hhhhHHHHH---hCCCeEEEcCCCC
Q 017153 114 SKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
..+....+. ..|..+||.|...
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 455544443 4578899997654
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.065 Score=51.65 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=54.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cc---ee----ee---c------------CcceEEeecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QL----SF---Q------------DKAYTVEELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~---~~----~~---~------------~~~~~v~~~~ 95 (376)
.||+|+|+ |.+|..+...|+.+++ ++..+. ++.. .+ .+ .. . ...+.+. .+
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~---~V~l~d-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d 77 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGF---DVTIYD-ISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TD 77 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCC---eEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CC
Confidence 68999998 9999999999987644 454443 2210 00 00 00 0 0112222 12
Q ss_pred cc-CCCCCcEEEEcCCCch--hhhhHHHH---HhCCCeEEEcCCCCCC
Q 017153 96 ED-SFDGVDIALFSAGGSI--SKKFGPIA---VEKGSIVVDNSSAFRM 137 (376)
Q Consensus 96 ~~-~~~~~DvVf~a~~~~~--s~~~~~~~---~~~G~~VIDlS~~~R~ 137 (376)
.+ .+.++|+||+|.|... -.++..++ ...++.++++++.+..
T Consensus 78 ~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~ 125 (287)
T PRK08293 78 LAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP 125 (287)
T ss_pred HHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH
Confidence 22 3579999999999763 33333333 3456777788888754
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.094 Score=49.53 Aligned_cols=66 Identities=20% Similarity=0.338 Sum_probs=37.9
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
|.|.||||++|..|++.|.+. ..++.++........... .....+. .....+.+.++|+||.|.+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD---GHEVTILTRSPPAGANTKWEGYKPWA-PLAESEALEGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc---CCEEEEEeCCCCCCCcccceeeeccc-ccchhhhcCCCCEEEECCCC
Confidence 468999999999999999875 347776653221111110 0000000 00112235689999988864
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.057 Score=53.27 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=43.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCC----CCCceeee------cCcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKR----SAGKQLSF------QDKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~----~~g~~~~~------~~~~~~v~~~~~~~~~~~Dv 104 (376)
++||+|+||+|.+|..++-.|...+. ...+++.+--.. ..|..... ...+..+..-+.+++.++|+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDv 82 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDA 82 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCE
Confidence 58999999999999999988876622 112676664322 12221110 00122333223456789999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.|.
T Consensus 83 VVitAG~ 89 (323)
T TIGR01759 83 ALLVGAF 89 (323)
T ss_pred EEEeCCC
Confidence 9888765
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=50.35 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=61.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|+|+|.+|.+|+-+..+|.++ ...+....++. . ++. ....+|+||.|+|.... .
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~---gatVtv~~s~t----------~-------~l~~~~~~ADIVI~avg~~~~--v 215 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDK---NATVTLTHSRT----------R-------NLAEVARKADILVVAIGRGHF--V 215 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHC---CCEEEEECCCC----------C-------CHHHHHhhCCEEEEecCcccc--C
Confidence 489999999999999999999875 34554332211 0 122 24689999999987544 2
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
-+.+.+.|+.|||.+-.+- .++ -.+-.++.+.++.
T Consensus 216 ~~~~ik~GavVIDvgin~~-~~g--kl~GDVdf~~v~~ 250 (284)
T PRK14179 216 TKEFVKEGAVVIDVGMNRD-ENG--KLIGDVDFDEVAE 250 (284)
T ss_pred CHHHccCCcEEEEecceec-CCC--CeecCccHHHHHh
Confidence 3445788999999986642 121 2455667666653
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.13 Score=55.43 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=27.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+||.|.|||||+|+.|++.|.++ ...+++++.
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~--~g~~V~~l~ 347 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRD--DNYEVYGLD 347 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhC--CCcEEEEEe
Confidence 579999999999999999999875 245777664
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.16 Score=48.98 Aligned_cols=142 Identities=14% Similarity=0.147 Sum_probs=73.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--------ec---C-----------cceEEeecCc-
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQ---D-----------KAYTVEELTE- 96 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--------~~---~-----------~~~~v~~~~~- 96 (376)
.||+|+|+ |.+|..+...|..++| ++.++......-+... .+ + ..+.... +.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~ 76 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF---QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL-DLK 76 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-cHH
Confidence 57999999 9999999999987644 4544422111000000 00 0 0122221 22
Q ss_pred cCCCCCcEEEEcCCCchhh--hhHHH---HHhCCCeEEEcCCCCCCCC-----CCc---EEeeccCHHhhcCcccCCCCC
Q 017153 97 DSFDGVDIALFSAGGSISK--KFGPI---AVEKGSIVVDNSSAFRMVE-----NVP---LVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~--~~~~~---~~~~G~~VIDlS~~~R~~~-----~~~---~~lpevN~~~i~~~~~~~~~~ 163 (376)
+.+.++|+||+|+|..... .+..+ ....++.+..+++.+.... ..+ .++--+|+-.... -.
T Consensus 77 ~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~------Lv 150 (288)
T PRK09260 77 AAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMK------LV 150 (288)
T ss_pred HhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCc------eE
Confidence 3467999999999987642 22222 2345666655666664321 011 2333334332211 12
Q ss_pred cEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 164 ALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
-+|..+.+..-. .-.+.++.+..+-..+.
T Consensus 151 e~v~g~~t~~~~-~~~~~~~l~~lg~~~v~ 179 (288)
T PRK09260 151 ELIRGLETSDET-VQVAKEVAEQMGKETVV 179 (288)
T ss_pred EEeCCCCCCHHH-HHHHHHHHHHcCCeEEE
Confidence 344444444444 45577888876644333
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.034 Score=53.92 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=51.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~~ 117 (376)
|||+|||. |..|..+.+.|.+.+| ++.+. +++...+.+... ...... ++.+ ..++|+||+|++.... .+.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~---~v~v~-~~~~~~~~~~~~--g~~~~~-s~~~~~~~advVi~~v~~~~~v~~v 72 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH---QLHVT-TIGPVADELLSL--GAVSVE-TARQVTEASDIIFIMVPDTPQVEEV 72 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC---eEEEE-eCCHhHHHHHHc--CCeecC-CHHHHHhcCCEEEEeCCChHHHHHH
Confidence 47999997 9999999999988644 45433 222111111111 111111 2223 3689999999998743 222
Q ss_pred H------HHHHhCCCeEEEcCCCC
Q 017153 118 G------PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~------~~~~~~G~~VIDlS~~~ 135 (376)
. ......|..|||+|..-
T Consensus 73 ~~~~~g~~~~~~~g~ivvd~sT~~ 96 (292)
T PRK15059 73 LFGENGCTKASLKGKTIVDMSSIS 96 (292)
T ss_pred HcCCcchhccCCCCCEEEECCCCC
Confidence 1 01124577899998653
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.1 Score=51.22 Aligned_cols=71 Identities=20% Similarity=0.334 Sum_probs=44.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEee--cC---ccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVEE--LT---EDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~~--~~---~~~~~~~DvVf~a~~~ 111 (376)
|||+|+|+||.||..++-.|..++. ..|++.+--....|..... ......+.. .+ .+++.++|+|+.+.+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 6899999999999999998887632 2466655322333332211 111223332 22 3567899999998776
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.17 Score=50.80 Aligned_cols=104 Identities=14% Similarity=0.243 Sum_probs=62.6
Q ss_pred ceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCC----CeEEEEEecCCCC--Ccee----eec--------C--
Q 017153 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKRSA--GKQL----SFQ--------D-- 86 (376)
Q Consensus 27 ~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p----~~~l~~v~s~~~~--g~~~----~~~--------~-- 86 (376)
.|..++-. ++||+|+|+ |-.|..|...|.+++.. .-++.. ..++.. ++.+ ... +
T Consensus 3 ~~~~~~~~----~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~N~~ylp~~~ 76 (365)
T PTZ00345 3 LFQKLRCG----PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRM-WVLEEIVEGEKLSDIINTKHENVKYLPGIK 76 (365)
T ss_pred chhhcccC----CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEE-EEecccccchHHHHHHHhcCCCcccCCCCc
Confidence 45555533 589999998 99999999999876310 023332 222221 1111 000 0
Q ss_pred --cceEEeecCc-cCCCCCcEEEEcCCCchhhhhHHHHHh-----CCCeEEEcCCCCCC
Q 017153 87 --KAYTVEELTE-DSFDGVDIALFSAGGSISKKFGPIAVE-----KGSIVVDNSSAFRM 137 (376)
Q Consensus 87 --~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~~~~~~-----~G~~VIDlS~~~R~ 137 (376)
.++.... |. +...++|++++|+|+...++...++.+ .+..+|.++.-+-.
T Consensus 77 Lp~ni~~ts-dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 77 LPDNIVAVS-DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred CCCceEEec-CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 1122221 22 235789999999999998888887654 24568888877744
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.21 Score=44.23 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=68.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCc--hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~--~s~~ 116 (376)
.++|.|+|.++.+|+-|..+|.++ +..+...-+.. +++ .+....+|+|+.|.|.. ...+
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~---~atVt~~h~~T----------~~l------~~~~~~ADIVVsa~G~~~~i~~~ 96 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNK---GATVTICHSKT----------KNL------QEITRRADIVVSAVGKPNLIKAD 96 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHT---T-EEEEE-TTS----------SSH------HHHHTTSSEEEE-SSSTT-B-GG
T ss_pred CCEEEEECCcCCCChHHHHHHHhC---CCeEEeccCCC----------Ccc------cceeeeccEEeeeeccccccccc
Confidence 479999999999999999999885 45554332211 011 12236899999998763 2333
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEE-EcC-CchHHHHHHHHhHHHHh
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI-ANP-NCSTIICLMAATPLHRR 186 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iV-a~P-gC~~ta~~l~L~pL~~~ 186 (376)
| .+.|+.|||.+-.+= ....-.+..++.+.++. .+..| ..| |.-+..+++.++-+.+.
T Consensus 97 ~----ik~gavVIDvG~~~~--~~~~~~~GDv~~~~~~~------~a~~itPvPgGVGplT~a~L~~N~v~a 156 (160)
T PF02882_consen 97 W----IKPGAVVIDVGINYV--PGDGKLVGDVDFESVKE------KASAITPVPGGVGPLTVAMLMKNLVKA 156 (160)
T ss_dssp G----S-TTEEEEE--CEEE--TTTTEEEESB-HHHHHT------TCSEEE-SSSSCHHHHHHHHHHHHHHH
T ss_pred c----ccCCcEEEecCCccc--cccceeeecccHHHhhc------cceEEeeCCCCccHHHHHHHHHHHHHH
Confidence 3 467999999987652 12234566777677764 34444 333 56676667766666553
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.075 Score=51.74 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=63.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|+|+|.+|.+|+-+.++|.+. ..++....++.. ++ .+....+|+||+|++... ...
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~---g~tVtv~~~rT~----------~l------~e~~~~ADIVIsavg~~~--~v~ 216 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA---NATVTIAHSRTR----------DL------PAVCRRADILVAAVGRPE--MVK 216 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC---CCEEEEECCCCC----------CH------HHHHhcCCEEEEecCChh--hcc
Confidence 589999999999999999999875 346654433321 00 122367999999999854 233
Q ss_pred HHHHhCCCeEEEcCCCCCCC--C---CCcEEeeccCHHhhcC
Q 017153 119 PIAVEKGSIVVDNSSAFRMV--E---NVPLVIPEVNPEAMSG 155 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~--~---~~~~~lpevN~~~i~~ 155 (376)
..++..|..|||.+-.+ .+ + +-.-.+-.++.+.++.
T Consensus 217 ~~~lk~GavVIDvGin~-~~~~~~~~g~~~l~GDvd~~~v~~ 257 (296)
T PRK14188 217 GDWIKPGATVIDVGINR-IPAPEKGEGKTRLVGDVAFAEAAE 257 (296)
T ss_pred hheecCCCEEEEcCCcc-cCCccccCCCceeeCCCCHHHHHh
Confidence 44577899999998764 22 1 1113567777676653
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.19 Score=48.70 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=61.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.++.+|+-|..+|.++ +..+....++. +++ .+....+|+|+.|+|..- -+-
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~---~atVt~~hs~t----------~~l------~~~~~~ADIVV~avG~~~--~i~ 216 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQA---GATVTICHSKT----------RDL------AAHTRQADIVVAAVGKRN--VLT 216 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEecCCC----------CCH------HHHhhhCCEEEEcCCCcC--ccC
Confidence 489999999999999999999865 34554332210 011 123468999999998642 233
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+..+.
T Consensus 217 ~~~ik~gavVIDVGin~-~~~g--kl~GDVd~~~v~~ 250 (285)
T PRK14189 217 ADMVKPGATVIDVGMNR-DDAG--KLCGDVDFAGVKE 250 (285)
T ss_pred HHHcCCCCEEEEccccc-cCCC--CeeCCccHHHHHh
Confidence 46678899999988764 2121 2455667666653
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.12 Score=50.84 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=26.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.|+||++|+.|++.|.++++ +++++.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~ 41 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY---TVKGTV 41 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEe
Confidence 46899999999999999999988743 565554
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.24 Score=47.67 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=53.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC------CCCceeeecCcceEEe--ec-CccC-CCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------SAGKQLSFQDKAYTVE--EL-TEDS-FDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~------~~g~~~~~~~~~~~v~--~~-~~~~-~~~~DvVf~a~ 109 (376)
|||+|+|+ |.+|..+...|.+++| ++..+.... ..|-.+.....+..+. .. +.++ ...+|++|.|+
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR---DVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC---ceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 58999998 9999999999988644 444443211 1121111111111111 11 1222 36799999999
Q ss_pred CCchhhhhHHHHHh---CCCeEEEcCCCC
Q 017153 110 GGSISKKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 110 ~~~~s~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
++....+..+.+.. .+..||.+...+
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~ 105 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGI 105 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCC
Confidence 98877776665543 456677665443
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.11 Score=51.28 Aligned_cols=93 Identities=14% Similarity=0.263 Sum_probs=60.3
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee---c--------------------CcceEEe
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---Q--------------------DKAYTVE 92 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~---~--------------------~~~~~v~ 92 (376)
.++++|||+||| |..|+-++.....- |.+++++++.++-.+...++ + ...+.+.
T Consensus 14 ~G~PiRVGlIGA-G~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT 90 (438)
T COG4091 14 EGKPIRVGLIGA-GEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVT 90 (438)
T ss_pred cCCceEEEEecc-cccchHHHHHHhhc--CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEe
Confidence 356799999999 99999999988876 99999998765432211110 0 0112232
Q ss_pred ecCccC---CCCCcEEEEcCCC-chhhhhHHHHHhCCCeEEEcC
Q 017153 93 ELTEDS---FDGVDIALFSAGG-SISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 93 ~~~~~~---~~~~DvVf~a~~~-~~s~~~~~~~~~~G~~VIDlS 132 (376)
+ |.+. ...+|+++++||. .+.++..-.+..+|..+|-+.
T Consensus 91 ~-D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmN 133 (438)
T COG4091 91 D-DAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMN 133 (438)
T ss_pred c-chhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEE
Confidence 2 1121 2578999999987 445556556667776666443
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.093 Score=51.82 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=44.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCCC----CCceeeec------CcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQ------DKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~~----~g~~~~~~------~~~~~v~~~~~~~~~~~Dv 104 (376)
+.||+|+||+|.+|..++-.|...+. ...+++.+-.... .|...... .....+..-+.+++.++|+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDi 83 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADV 83 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCE
Confidence 57999999999999999987765421 1236776643222 22221110 0122333333466789999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.+.
T Consensus 84 VVitaG~ 90 (326)
T PRK05442 84 ALLVGAR 90 (326)
T ss_pred EEEeCCC
Confidence 9988764
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.16 Score=49.37 Aligned_cols=68 Identities=18% Similarity=0.392 Sum_probs=41.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceee--e----cCcceEEee-cCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS--F----QDKAYTVEE-LTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~--~----~~~~~~v~~-~~~~~~~~~DvVf~a~~ 110 (376)
+||+|+|+ |.+|..++..+..+++ .+++++-.... .|.... . ......+.. .+.+++.++|+||+|.+
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~--~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKEL--GDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCC
Confidence 79999999 9999999998887632 27766542211 121110 0 111223332 23345789999999864
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.37 Score=45.67 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC-------CCC-CeEEEEEe----cCCCCCceeee-----------------cCcce
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR-------DFP-YRSIKMLA----SKRSAGKQLSF-----------------QDKAY 89 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~-------~~p-~~~l~~v~----s~~~~g~~~~~-----------------~~~~~ 89 (376)
..||.|+|+ |-+|.++++.|... +|+ ..++..+- +.+..++.+.. ...++
T Consensus 11 ~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 11 PVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 589999999 99999999999764 233 23555442 12222222110 00012
Q ss_pred EEee----cCcc-CCCCCcEEEEcCCCchhhhhHHHHHhC----CCeEEEcCC
Q 017153 90 TVEE----LTED-SFDGVDIALFSAGGSISKKFGPIAVEK----GSIVVDNSS 133 (376)
Q Consensus 90 ~v~~----~~~~-~~~~~DvVf~a~~~~~s~~~~~~~~~~----G~~VIDlS~ 133 (376)
.++. ++++ .+.++|+|+.|++...++.+..+.... ...+||...
T Consensus 90 ~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccC
Confidence 2221 1222 245789999999999998877655433 356777665
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.096 Score=52.23 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=48.7
Q ss_pred CCCceeeec-cCCCCCC-CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceee--ec---CcceEEee-
Q 017153 24 TKPMFTRVR-MSYQESA-PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS--FQ---DKAYTVEE- 93 (376)
Q Consensus 24 ~~~~~~~~~-~~~~~~~-irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~--~~---~~~~~v~~- 93 (376)
++||..... |. ++. .||+|+|+ |.||..++-.|...+. .-+++.+--.. ..|.... .. .....+..
T Consensus 22 ~~~~~~~~~~m~--~~~~~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~ 97 (350)
T PLN02602 22 FKPIHNSSPPSP--TRRHTKVSVVGV-GNVGMAIAQTILTQDL-ADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS 97 (350)
T ss_pred hhcccccccccc--cCCCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC
Confidence 455554443 42 123 79999997 9999999998877632 23666654322 1222111 00 01134433
Q ss_pred cCccCCCCCcEEEEcCCC
Q 017153 94 LTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 94 ~~~~~~~~~DvVf~a~~~ 111 (376)
.+.+++.++|+|+.+.+.
T Consensus 98 ~dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 98 TDYAVTAGSDLCIVTAGA 115 (350)
T ss_pred CCHHHhCCCCEEEECCCC
Confidence 244567899999998765
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.025 Score=50.65 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=39.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~ 112 (376)
..+|+|+|. |.+|+++.++|..- ..++.+......... .......... +.++ +..+|+|++++|..
T Consensus 36 g~tvgIiG~-G~IG~~vA~~l~~f---G~~V~~~d~~~~~~~--~~~~~~~~~~--~l~ell~~aDiv~~~~plt 102 (178)
T PF02826_consen 36 GKTVGIIGY-GRIGRAVARRLKAF---GMRVIGYDRSPKPEE--GADEFGVEYV--SLDELLAQADIVSLHLPLT 102 (178)
T ss_dssp TSEEEEEST-SHHHHHHHHHHHHT---T-EEEEEESSCHHHH--HHHHTTEEES--SHHHHHHH-SEEEE-SSSS
T ss_pred CCEEEEEEE-cCCcCeEeeeeecC---CceeEEecccCChhh--hcccccceee--ehhhhcchhhhhhhhhccc
Confidence 489999998 99999999999864 457766653222111 0000012222 2233 46899999999854
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.072 Score=49.76 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=41.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-ccC----CCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDS----FDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~~----~~~~DvVf~a~~~ 111 (376)
++|.|.||||++|+.+++.|..+ ..++++++.......... .+.++...++. +.. +.++|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~---~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR---GHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC---CCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 57999999999999999999987 346666654322221221 11122222222 222 3689999888873
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.089 Score=51.81 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=63.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCC--CeEEEEEecCCCCCceeee--c--CcceEEeecCccCC---CCCcEEEEc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP--YRSIKMLASKRSAGKQLSF--Q--DKAYTVEELTEDSF---DGVDIALFS 108 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p--~~~l~~v~s~~~~g~~~~~--~--~~~~~v~~~~~~~~---~~~DvVf~a 108 (376)
+.+|.||+|+ |.+++.+++.|... | ...++++++++ ..+..++ + ..+.++.. .-+++ ..+|+|...
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~--p~s~~~Ivava~~s-~~~A~~fAq~~~~~~~k~y~-syEeLakd~~vDvVyi~ 79 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTL--PESNHQIVAVADPS-LERAKEFAQRHNIPNPKAYG-SYEELAKDPEVDVVYIS 79 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccC--cccCcEEEEEeccc-HHHHHHHHHhcCCCCCcccc-CHHHHhcCCCcCEEEeC
Confidence 4699999999 99999999999776 6 78999998873 2222222 1 11122221 12233 478999999
Q ss_pred CCCchhhhhHHHHHhCCCeEE
Q 017153 109 AGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VI 129 (376)
+++....+++-.++..|..|.
T Consensus 80 ~~~~qH~evv~l~l~~~K~VL 100 (351)
T KOG2741|consen 80 TPNPQHYEVVMLALNKGKHVL 100 (351)
T ss_pred CCCccHHHHHHHHHHcCCcEE
Confidence 999999999999998888765
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.14 Score=47.74 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=56.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCC-----------CCCceeee--------cCcceEEeec-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKR-----------SAGKQLSF--------QDKAYTVEEL- 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~-----------~~g~~~~~--------~~~~~~v~~~- 94 (376)
..||.|+|+ |-+|.++++.|...+. -++..+- +.+ ..|+.-.. ....+.+...
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv--g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV--GKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 479999999 9999999999988743 3444331 111 12221110 0112222221
Q ss_pred ---Cc----cCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 95 ---TE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 95 ---~~----~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
+. +.+.++|+||+|++...++.+..++ .+.|+.+|+.+.
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~ 144 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAV 144 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 11 1246899999999988777666654 567899998643
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.19 Score=51.71 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
..+|+|+|+| |..|..+++.|.+++|.. ++..+..... .+ ..++++. +.+++ ..+|+++.|+|....
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g-~v~~Vnp~~~---~i----~G~~~~~-sl~~lp~~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKG-KIYPVNPKAG---EI----LGVKAYP-SVLEIPDPVDLAVIVVPAKYV 77 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCC-cEEEECCCCC---cc----CCccccC-CHHHCCCCCCEEEEecCHHHH
Confidence 4789999998 668999999998875532 5555543211 11 1122322 11223 468999999999999
Q ss_pred hhhHHHHHhCCCe-EEEcCCCCC
Q 017153 115 KKFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 115 ~~~~~~~~~~G~~-VIDlS~~~R 136 (376)
.+.++++.++|++ +|-+|+-|.
T Consensus 78 ~~~l~e~~~~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 78 PQVVEECGEKGVKGAVVITAGFK 100 (447)
T ss_pred HHHHHHHHhcCCCEEEEECCCcc
Confidence 9999999999987 445677674
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.15 Score=44.17 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+..+|.|+|.+.-+|+.|..+|.++ ..++....++. +++ .+...++|+|++|++.. .-+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~---gatV~~~~~~t----------~~l------~~~v~~ADIVvsAtg~~--~~i 85 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRD---GATVYSCDWKT----------IQL------QSKVHDADVVVVGSPKP--EKV 85 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEeCCCC----------cCH------HHHHhhCCEEEEecCCC--Ccc
Confidence 3589999999999999999999874 45555443211 001 12347899999999876 334
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
-...++.|+.|||.+.+.
T Consensus 86 ~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHcCCCCEEEEcCCCc
Confidence 456678999999877654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.096 Score=51.75 Aligned_cols=90 Identities=14% Similarity=0.161 Sum_probs=53.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
.++|+|||+ |.+|..+++.|...+ +++.+...+.......... ....+. +.. ...++|+||+|+|.....+.
T Consensus 17 gktIgIIG~-GsmG~AlA~~L~~sG---~~Vvv~~r~~~~s~~~A~~-~G~~~~--s~~eaa~~ADVVvLaVPd~~~~~V 89 (330)
T PRK05479 17 GKKVAIIGY-GSQGHAHALNLRDSG---VDVVVGLREGSKSWKKAEA-DGFEVL--TVAEAAKWADVIMILLPDEVQAEV 89 (330)
T ss_pred CCEEEEEee-HHHHHHHHHHHHHCC---CEEEEEECCchhhHHHHHH-CCCeeC--CHHHHHhcCCEEEEcCCHHHHHHH
Confidence 378999998 999999999998763 3655433322211111100 012221 322 34789999999998877776
Q ss_pred H-HHHHh---CCCeEEEcCCCCC
Q 017153 118 G-PIAVE---KGSIVVDNSSAFR 136 (376)
Q Consensus 118 ~-~~~~~---~G~~VIDlS~~~R 136 (376)
. +.+.. .|..+ ..++-|.
T Consensus 90 ~~~~I~~~Lk~g~iL-~~a~G~~ 111 (330)
T PRK05479 90 YEEEIEPNLKEGAAL-AFAHGFN 111 (330)
T ss_pred HHHHHHhcCCCCCEE-EECCCCC
Confidence 6 44443 46655 4444454
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.12 Score=50.67 Aligned_cols=69 Identities=17% Similarity=0.336 Sum_probs=43.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC--CCceee--ec---CcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQLS--FQ---DKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~--~g~~~~--~~---~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
+||+|+|| |.+|..+.-.|... +.. +++.+--... .|.... .. .....+..-+.+++.++|+|+.+.+.
T Consensus 7 ~ki~iiGa-G~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 79999999 99999999988876 554 5665542221 122111 00 01233333334567899999998765
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.15 Score=48.90 Aligned_cols=88 Identities=19% Similarity=0.058 Sum_probs=53.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe--cCCCCCceeee--cCcceEEeecC-cc-CC--CCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAGKQLSF--QDKAYTVEELT-ED-SF--DGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~--s~~~~g~~~~~--~~~~~~v~~~~-~~-~~--~~~DvVf~a~~ 110 (376)
.++|-|.|. |++|.+.+|.|..+ |.++++... |....|+.+.. +..++-+...+ .+ ++ ...++++..+-
T Consensus 2 ~~~vvqyGt-G~vGv~air~l~ak--pe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~ 78 (350)
T COG3804 2 SLRVVQYGT-GSVGVAAIRGLLAK--PELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLL 78 (350)
T ss_pred CceeEEecc-chHHHHHHHHHHcC--CCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeeccc
Confidence 478999995 99999999999988 999998654 34456766554 11233333211 11 11 12233333332
Q ss_pred CchhhhhHHHHHhCCCeEEEc
Q 017153 111 GSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDl 131 (376)
. +-+..++++.+|+.||--
T Consensus 79 ~--~~~~y~rlL~aGiNVv~~ 97 (350)
T COG3804 79 P--SVDEYARLLRAGINVVTP 97 (350)
T ss_pred c--hHHHHHHHHHcCCceecc
Confidence 2 133445678899999953
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.033 Score=54.50 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee---cCcceEEeecC-c----cCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEELT-E----DSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~---~~~~~~v~~~~-~----~~~~~~DvVf~a~~ 110 (376)
...+-|.|||||+|+-+++.|..+++ +. ++++++. ++.-.. -+.+-.+.++. + +..+.++||+.|.|
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~---~~-aLAgRs~-~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvG 80 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGL---TA-ALAGRSS-AKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVG 80 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCC---ch-hhccCCH-HHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEeccc
Confidence 36789999999999999999988643 33 4555442 221100 11221222211 2 12468999999999
Q ss_pred Cch--hhhhHHHHHhCCCeEEEcCCCC
Q 017153 111 GSI--SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~~--s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
... +..++...+.+|.--.|+++..
T Consensus 81 Pyt~~g~plv~aC~~~GTdY~DiTGEi 107 (382)
T COG3268 81 PYTRYGEPLVAACAAAGTDYADITGEI 107 (382)
T ss_pred cccccccHHHHHHHHhCCCeeeccccH
Confidence 865 4566677778999999999853
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.19 Score=49.43 Aligned_cols=102 Identities=14% Similarity=0.235 Sum_probs=63.5
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcC--CCCCeEEE---EEecCCCCC--ceeee----cCcceE----------Eee-
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDR--DFPYRSIK---MLASKRSAG--KQLSF----QDKAYT----------VEE- 93 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~--~~p~~~l~---~v~s~~~~g--~~~~~----~~~~~~----------v~~- 93 (376)
++++.||+|+|. |..|..+.+++.+. .||.++.. ++...+-.| +.+.+ ...+++ +..
T Consensus 18 ~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv 96 (372)
T KOG2711|consen 18 ERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAV 96 (372)
T ss_pred hcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEec
Confidence 345799999997 99999999988653 23433221 122333334 12211 111111 111
Q ss_pred cCc-cCCCCCcEEEEcCCCchhhhhHHHHH---hCCCeEEEcCCCCCCC
Q 017153 94 LTE-DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMV 138 (376)
Q Consensus 94 ~~~-~~~~~~DvVf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R~~ 138 (376)
.|. +...++|++++++||.......+++. +.++..|+|+--|-..
T Consensus 97 ~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~ 145 (372)
T KOG2711|consen 97 PDLVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVG 145 (372)
T ss_pred chHHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceecc
Confidence 111 22368999999999999888888774 5788899998877544
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.092 Score=57.27 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=55.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-eeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.||+|+|+ |.+|..+++.|...+++ .++.++ +++.... .....+. ......+. +.+.++|+||+|+|.....+.
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~-~~V~~~-d~~~~~~~~a~~~g~-~~~~~~~~~~~~~~aDvVilavp~~~~~~v 79 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLA-REVVAV-DRRAKSLELAVSLGV-IDRGEEDLAEAVSGADVIVLAVPVLAMEKV 79 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCC-CEEEEE-ECChhHHHHHHHCCC-CCcccCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 68999997 99999999999876432 244433 3322110 0000010 00001111 224689999999998877777
Q ss_pred HHHHH---hCCCeEEEcCCC
Q 017153 118 GPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~ 134 (376)
.+.+. ..++.|+|+++.
T Consensus 80 l~~l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 80 LADLKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHHHHhcCCCcEEEEcCCC
Confidence 66654 457889998874
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.078 Score=52.42 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=49.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
.++|+|+|+ |.+|+.+.+.|... | ..++.+. +++. ...... ..... .+.+ .+.++|+|++|+|.....+.
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~-~-g~~V~~~-d~~~-~~~~~~---~~~~~-~~l~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 146 DLKVAVIGT-GRIGLAVAKIFAKG-Y-GSDVVAY-DPFP-NAKAAT---YVDYK-DTIEEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc-C-CCEEEEE-CCCc-cHhHHh---hcccc-CCHHHHHHhCCEEEEeCCCCcchhh
Confidence 379999998 99999999998432 2 3455443 3321 111100 11111 1222 34789999999998654333
Q ss_pred H-----HHHHhCCCeEEEcCC
Q 017153 118 G-----PIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~-----~~~~~~G~~VIDlS~ 133 (376)
. -...+.|+.+|+.|-
T Consensus 217 li~~~~l~~mk~gailIN~sR 237 (332)
T PRK08605 217 LFNADLFKHFKKGAVFVNCAR 237 (332)
T ss_pred hcCHHHHhcCCCCcEEEECCC
Confidence 2 112345777777654
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.19 Score=49.31 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=42.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecC--CCCCceeee------cCcceEEee-cCccCCCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASK--RSAGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~--~~~g~~~~~------~~~~~~v~~-~~~~~~~~~DvVf~a~ 109 (376)
+||+|+|| |.||..++-+|... ... |++.+-=. ...|..... ...+..+.. -+.+++.++|+|+.+.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~--~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQ--GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcc--cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999999 99999999988766 444 77665322 122222111 112233333 2345678999999887
Q ss_pred C
Q 017153 110 G 110 (376)
Q Consensus 110 ~ 110 (376)
+
T Consensus 78 G 78 (313)
T COG0039 78 G 78 (313)
T ss_pred C
Confidence 4
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.37 Score=50.26 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=51.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-----------------cC-cceEEeecCc-cCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-----------------QD-KAYTVEELTE-DSF 99 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-----------------~~-~~~~v~~~~~-~~~ 99 (376)
+||||||+ |.+|..++..|+.++| ++.+.. ++.. -+.+.. .. ..+.+.. +. +.+
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~---~V~v~D-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~-~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI---DVAVFD-PHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCA-SLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC---eEEEEe-CCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeC-CHHHHh
Confidence 58999998 9999999999988744 555432 2211 001000 00 0122222 23 345
Q ss_pred CCCcEEEEcCCCchhh--hhHHH---HHhCCCeEEEcCCCCC
Q 017153 100 DGVDIALFSAGGSISK--KFGPI---AVEKGSIVVDNSSAFR 136 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~--~~~~~---~~~~G~~VIDlS~~~R 136 (376)
.++|+||+|++..... .+... +...++.+...++.+.
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~ 120 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFL 120 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 7999999999988532 22222 2344565555665543
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.18 Score=53.31 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
...|.|.||+|++|+.+++.|++++ .+++++.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval~ 111 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLG---FRVRAGV 111 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 3679999999999999999998863 4666554
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.16 Score=50.14 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=40.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCC----CCCceeeec------CcceEEeecCccCCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKR----SAGKQLSFQ------DKAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~----~~g~~~~~~------~~~~~v~~~~~~~~~~~DvV 105 (376)
.||+|+||+|.+|..+...|...+. ...+++.+--.. ..|...... .....+..-+.+++.++|+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 4899999999999999998887621 112366553222 112111100 01122222223456788988
Q ss_pred EEcCCC
Q 017153 106 LFSAGG 111 (376)
Q Consensus 106 f~a~~~ 111 (376)
+.+.+.
T Consensus 81 VitAG~ 86 (323)
T cd00704 81 ILVGAF 86 (323)
T ss_pred EEeCCC
Confidence 887665
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.11 Score=50.22 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=26.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|+||++|+.|++.|.++++ +++++.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~---~V~~~~ 35 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY---TVKATV 35 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC---EEEEEE
Confidence 47899999999999999999988744 555544
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.2 Score=47.74 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=25.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
+|.|.|+|||+|+.|++.|.+++ .++..+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeC
Confidence 49999999999999999999853 36666653
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.26 Score=49.04 Aligned_cols=108 Identities=16% Similarity=0.249 Sum_probs=62.7
Q ss_pred EEEEECcccHHHHHHHHHHhcCC-C-C---CeEEEEEecCCC--CCceee----ec--------C----cceEEeecCc-
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRD-F-P---YRSIKMLASKRS--AGKQLS----FQ--------D----KAYTVEELTE- 96 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~-~-p---~~~l~~v~s~~~--~g~~~~----~~--------~----~~~~v~~~~~- 96 (376)
||+|+|+ |..|..|...|..++ . + +.++.... ++. .+..+. .. + .++.... |.
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~-~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~-dl~ 77 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWV-FEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP-DLV 77 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEE-eccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC-CHH
Confidence 6899998 999999999998753 0 0 13444332 210 011110 00 0 1122211 22
Q ss_pred cCCCCCcEEEEcCCCchhhhhHHHHH---hCCCeEEEcCCCCCCCCCCcEEeeccCHH
Q 017153 97 DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMVENVPLVIPEVNPE 151 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R~~~~~~~~lpevN~~ 151 (376)
+.+.++|++|+|+|+...++.+.++. ..+..+|.++.-+-.+++....+.++=.+
T Consensus 78 eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e 135 (342)
T TIGR03376 78 EAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE 135 (342)
T ss_pred HHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH
Confidence 23478999999999998888777664 45678998888875443233333443333
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PLN02700 homoserine dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.18 Score=50.73 Aligned_cols=29 Identities=14% Similarity=-0.070 Sum_probs=25.4
Q ss_pred CcEEEEcCCCchhhhhHHHHHhCCCeEEE
Q 017153 102 VDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 102 ~DvVf~a~~~~~s~~~~~~~~~~G~~VID 130 (376)
.+|+++|+++....++.+.++++|+.||-
T Consensus 110 ~~ViVD~T~s~~~~~~y~~aL~~G~hVVT 138 (377)
T PLN02700 110 GLVVVDCSASMETIGALNEAVDLGCCIVL 138 (377)
T ss_pred CCEEEECCCChHHHHHHHHHHHCCCeEEc
Confidence 59999999997777888889999999994
|
|
| >PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.19 Score=51.48 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=55.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCCceee----e-------cCc---------------ceEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLS----F-------QDK---------------AYTV 91 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g~~~~----~-------~~~---------------~~~v 91 (376)
++||+|+|+||-||...++.+.++ |+ +++++++..+....... + ... +..+
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~--pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~v 134 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAEN--PDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEI 134 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhC--ccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEE
Confidence 479999999999999999999887 54 88988865443322111 0 000 0111
Q ss_pred e-ecC-cc---CCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 92 E-ELT-ED---SFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 92 ~-~~~-~~---~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
. ..+ .. ...++|+|+.+........-.-.++++|..|.
T Consensus 135 l~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VA 177 (454)
T PLN02696 135 IPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIA 177 (454)
T ss_pred EECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEE
Confidence 1 000 01 12478999999877655444456678887765
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.21 Score=49.17 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=44.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--ecCcceEEeec-C----ccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTVEEL-T----EDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--~~~~~~~v~~~-~----~~~~~~~DvVf~a~~~ 111 (376)
+.||+|+||+|.||..+...|..++. ..+++.+--....|.... .......+... + .+++.++|+|+.|.+.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 46999999999999999998886522 235655432222232111 11112233322 2 2456899999999877
Q ss_pred c
Q 017153 112 S 112 (376)
Q Consensus 112 ~ 112 (376)
.
T Consensus 87 ~ 87 (321)
T PTZ00325 87 P 87 (321)
T ss_pred C
Confidence 3
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.092 Score=49.76 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=24.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
||.|.|+||++|+.+++.|.++++ ++..+.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR---VVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEeC
Confidence 589999999999999999988643 565443
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.17 Score=48.95 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=60.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|+++.+|+-+..+|.++ +.++....++. .++ .+...++|+||.|+|...- +-
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~---gatVtv~~s~t----------~~l------~~~~~~ADIVIsAvg~p~~--i~ 216 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK---NASVTILHSRS----------KDM------ASYLKDADVIVSAVGKPGL--VT 216 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC---CCeEEEEeCCc----------hhH------HHHHhhCCEEEECCCCCcc--cC
Confidence 489999999888999999999875 45666554421 011 1234789999999987421 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+... ..++ -.+-.++.+.++
T Consensus 217 ~~~vk~gavVIDvGi~~-~~~g--kl~GDvd~~~~~ 249 (286)
T PRK14175 217 KDVVKEGAVIIDVGNTP-DENG--KLKGDVDYDAVK 249 (286)
T ss_pred HHHcCCCcEEEEcCCCc-CCCC--CeecCccHHHHH
Confidence 23457799999998763 1111 134456656555
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.19 Score=49.62 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=43.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--ecCcceEEeec--C---ccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTVEEL--T---EDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--~~~~~~~v~~~--~---~~~~~~~DvVf~a~~~ 111 (376)
+.||+|+||+|.||..+...|..++. .-+++.+--....|.... .......+..+ + .+++.++|+|+.+.+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~-~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPL-VSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 46999999999999999998886522 225665532222332211 11112233321 2 2356899999998776
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.3 Score=43.18 Aligned_cols=138 Identities=19% Similarity=0.204 Sum_probs=70.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce-----------eeecC-----------cceEEeecCcc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-----------LSFQD-----------KAYTVEELTED 97 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~-----------~~~~~-----------~~~~v~~~~~~ 97 (376)
++|+|+|+ |.+|..+...|..+++ ++.++......... +...+ ..+.+. .+..
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~---~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~~ 77 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGH---EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSLA 77 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCC---eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcHH
Confidence 58999997 9999999999998754 55544321110000 00000 012222 1222
Q ss_pred -CCCCCcEEEEcCCCch--hhhhHHHHH---hCCCeEEEcCCCCCCC--------CCCcEEeeccCHHhhcCcccCCCCC
Q 017153 98 -SFDGVDIALFSAGGSI--SKKFGPIAV---EKGSIVVDNSSAFRMV--------ENVPLVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 98 -~~~~~DvVf~a~~~~~--s~~~~~~~~---~~G~~VIDlS~~~R~~--------~~~~~~lpevN~~~i~~~~~~~~~~ 163 (376)
.+.++|+||+|+|... -..+...+. ...+.+...++.+... .+.-++.-.+|+..+.. -.
T Consensus 78 ~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~------lv 151 (308)
T PRK06129 78 DAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIP------VV 151 (308)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCc------eE
Confidence 3578999999999864 233333332 2234343333332211 01124444455433221 12
Q ss_pred cEEEcCCchHHHHHHHHhHHHHhCCC
Q 017153 164 ALIANPNCSTIICLMAATPLHRRAKV 189 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~pL~~~~~i 189 (376)
.+|..+++....+. .+.++.+..+=
T Consensus 152 eiv~~~~t~~~~~~-~~~~~~~~lG~ 176 (308)
T PRK06129 152 EVVPAPWTAPATLA-RAEALYRAAGQ 176 (308)
T ss_pred EEeCCCCCCHHHHH-HHHHHHHHcCC
Confidence 35655566555544 57788887663
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.1 Score=54.70 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=54.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--cCcceEEeecC--ccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--QDKAYTVEELT--EDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~ 113 (376)
..+|+|+|+ |-+|+.+++.|..+ +.-++.++ +++. ....+.. .+..+.+...+ .+.+.++|+||+|++...
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~--G~~~V~V~-nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSK--GCTKMVVV-NRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhC--CCCeEEEE-eCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 478999999 99999999999876 32344433 3321 1111111 11112222222 123578999999986644
Q ss_pred ---hhhhHHHHHhC------CCeEEEcCCC
Q 017153 114 ---SKKFGPIAVEK------GSIVVDNSSA 134 (376)
Q Consensus 114 ---s~~~~~~~~~~------G~~VIDlS~~ 134 (376)
..++++.+... ...+||++=+
T Consensus 342 pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 342 PLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 55666655321 1469999876
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.27 Score=39.97 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=50.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCccCCCCCcEEEEcCCCch-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGSI-SK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~-s~ 115 (376)
..+|.|+|+ |-+|..=++.|.+. ..++.+++... ... . ..+.+. ++ .+++.++|+||.|++... ..
T Consensus 7 ~~~vlVvGg-G~va~~k~~~Ll~~---gA~v~vis~~~---~~~-~--~~i~~~~~~~-~~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 7 GKRVLVVGG-GPVAARKARLLLEA---GAKVTVISPEI---EFS-E--GLIQLIRREF-EEDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp T-EEEEEEE-SHHHHHHHHHHCCC---TBEEEEEESSE---HHH-H--TSCEEEESS--GGGCTTESEEEE-SS-HHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEECCch---hhh-h--hHHHHHhhhH-HHHHhhheEEEecCCCHHHHH
Confidence 489999999 99999999999885 46777666432 000 0 112222 22 245789999999997754 44
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
.......+.|+.|=
T Consensus 76 ~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 76 AIYADARARGILVN 89 (103)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCEEEE
Confidence 44455556777654
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.18 Score=50.88 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=44.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC----eEEEEE-ecC---CCCCceeee------cCcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY----RSIKML-ASK---RSAGKQLSF------QDKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~----~~l~~v-~s~---~~~g~~~~~------~~~~~~v~~~~~~~~~~~Dv 104 (376)
+.||+|+||+|.||..++-.|...+.-+ +.++++ .+. ...|..... ....+.+..-+.+++.++|+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDI 123 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADW 123 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCE
Confidence 6899999999999999999887663211 345444 221 111221110 01123333334566889999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.+.
T Consensus 124 VVitAG~ 130 (387)
T TIGR01757 124 ALLIGAK 130 (387)
T ss_pred EEECCCC
Confidence 9998765
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.16 Score=48.87 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=25.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
|+|.|.|++|++|+.+++.|.+++ .++.++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 479999999999999999998873 36665543
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.24 Score=44.89 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++++.|.|++|++|+.+.+.|.++ .++.++.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT----HTLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh----CCEEEEe
Confidence 468999999999999999999875 3555444
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.074 Score=54.22 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecC--ccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~s~ 115 (376)
..||.|+|+ |-+|+.+++.|..+ ..-++. +++++. ..+.+........+..++ .+.+.++|+||.|++...--
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~--g~~~I~-V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~v 256 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTAL--APKQIM-LANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYI 256 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHc--CCCEEE-EECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCee
Confidence 378999998 99999999999876 333444 444431 112222111111222222 23357899999999774332
Q ss_pred hhHHHHHhCCCeEEEcCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~ 134 (376)
-...........+||++=+
T Consensus 257 i~~~~~~~~~~~~iDLavP 275 (414)
T PRK13940 257 VTCKYVGDKPRVFIDISIP 275 (414)
T ss_pred ECHHHhCCCCeEEEEeCCC
Confidence 1112222234579999766
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.15 Score=50.28 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=57.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec---CcceEEeec-Ccc-CCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ---DKAYTVEEL-TED-SFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~---~~~~~v~~~-~~~-~~~~~DvVf~a~~~~ 112 (376)
..+++|+|+ |..|+..++.+... ..++.+.+.+++.. .+.+... ...+.+... +.+ .+.++|+|+.|||+.
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~--~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAV--RDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK 203 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhc--CCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence 478999998 99999888877644 34566666665421 1111110 001222222 222 357899999999987
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
...+. ..++.|+.|+-..++.
T Consensus 204 -~p~i~-~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 204 -TPVFS-EKLKKGVHINAVGSFM 224 (325)
T ss_pred -CcchH-HhcCCCcEEEecCCCC
Confidence 34455 6678899998777653
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.2 Score=48.23 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=74.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cceee----------ecC-----------cceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLS----------FQD-----------KAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~----------~~~-----------~~~~v~~~~ 95 (376)
..||+|+|+ |..|..+...|..+++ ++.+.. ++.. .+... ..+ ..+.... +
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~---~V~l~d-~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY---DVLLND-VSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT-D 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC---eEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC-C
Confidence 368999998 9999999999988644 555443 2211 11000 000 0122221 2
Q ss_pred ccCCCCCcEEEEcCCCchh--hhhHHHH---HhCCCeEEEcCCCCCCCC---CC--c---EEeeccCHHhhcCcccCCCC
Q 017153 96 EDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMVE---NV--P---LVIPEVNPEAMSGIKVGMGK 162 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~~--~---~~lpevN~~~i~~~~~~~~~ 162 (376)
.+.+.++|+||+|+|.... ..+...+ +..++.++.+++.+.... .. | .++--+|+-.+.. .
T Consensus 78 ~~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~------~ 151 (292)
T PRK07530 78 LEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMK------L 151 (292)
T ss_pred HHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCc------e
Confidence 3346799999999987533 2333333 345677877777765321 00 0 2333333222221 1
Q ss_pred CcEEEcCCchHHHHHHHHhHHHHhCCCcE
Q 017153 163 GALIANPNCSTIICLMAATPLHRRAKVTR 191 (376)
Q Consensus 163 ~~iVa~PgC~~ta~~l~L~pL~~~~~i~~ 191 (376)
..++..+++..-.+ -.+.++.+..+-..
T Consensus 152 vei~~g~~t~~~~~-~~~~~~~~~~gk~~ 179 (292)
T PRK07530 152 VELIRGIATDEATF-EAAKEFVTKLGKTI 179 (292)
T ss_pred EEEeCCCCCCHHHH-HHHHHHHHHcCCeE
Confidence 23555556655543 44667777665433
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.17 Score=49.76 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=87.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCc-hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS-ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~-~s~~ 116 (376)
.+||+|||+ |..|..+++.|..++ +++.....+.... ...... .+.+.. ..+...++|+||+|+|.. ....
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG---~~Viv~~~~~~~~~~~a~~~--Gv~~~s-~~ea~~~ADiVvLaVpp~~~~~~ 75 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSG---LNVIVGLRKGGASWKKATED--GFKVGT-VEEAIPQADLIMNLLPDEVQHEV 75 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCC---CeEEEEECcChhhHHHHHHC--CCEECC-HHHHHhcCCEEEEeCCcHhHHHH
Confidence 378999998 999999999998763 3543333222111 111011 122221 122357899999999987 4444
Q ss_pred hHHHHH---hCCCeEEEcCCCCCCCC---------CCcEEeeccCHHhhc-CcccCCCCC-cEE-EcCCchHHHHHHHHh
Q 017153 117 FGPIAV---EKGSIVVDNSSAFRMVE---------NVPLVIPEVNPEAMS-GIKVGMGKG-ALI-ANPNCSTIICLMAAT 181 (376)
Q Consensus 117 ~~~~~~---~~G~~VIDlS~~~R~~~---------~~~~~lpevN~~~i~-~~~~~~~~~-~iV-a~PgC~~ta~~l~L~ 181 (376)
+.+.+. +.| .+|..++-|.+.. ++..+.|-.+...++ .+.++ .+. .++ .++.++..+.-+++.
T Consensus 76 v~~ei~~~l~~g-~iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G-~G~~~l~a~~~~~~~~~~~~~~~ 153 (314)
T TIGR00465 76 YEAEIQPLLKEG-KTLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEG-FGVPTLIAVEQDPTGEAMAIALA 153 (314)
T ss_pred HHHHHHhhCCCC-cEEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcC-CCeeEEEEecCCCCHHHHHHHHH
Confidence 444343 234 4888887776432 123456665544221 00001 122 344 677788777766665
Q ss_pred HHHHhCCCc-------------EEEEEEEccccccChHhHH
Q 017153 182 PLHRRAKVT-------------RMVVSTYQAASGAGAAAME 209 (376)
Q Consensus 182 pL~~~~~i~-------------~v~v~t~~gvSGaGr~~~~ 209 (376)
-+..-+..+ .=.++...+.||.|-.-+.
T Consensus 154 ~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~ 194 (314)
T TIGR00465 154 YAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIK 194 (314)
T ss_pred HHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHH
Confidence 443333331 1124556778888765544
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.52 Score=44.03 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=58.2
Q ss_pred CCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeeecCcceEEe--ecCccC
Q 017153 23 RTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVE--ELTEDS 98 (376)
Q Consensus 23 ~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~--~~~~~~ 98 (376)
+.|||+--+..+ ..+|-|+|+ |.++..=++.|++. ..++.+++ +..... .+.. ...+.+. +.++.+
T Consensus 13 ~~~~~pi~l~~~----~~~VLVVGG-G~VA~RK~~~Ll~~---gA~VtVVa-p~i~~el~~l~~-~~~i~~~~r~~~~~d 82 (223)
T PRK05562 13 ENKYMFISLLSN----KIKVLIIGG-GKAAFIKGKTFLKK---GCYVYILS-KKFSKEFLDLKK-YGNLKLIKGNYDKEF 82 (223)
T ss_pred cCCEeeeEEECC----CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEEc-CCCCHHHHHHHh-CCCEEEEeCCCChHH
Confidence 356666655533 589999999 99998877777764 35666554 222111 0111 1123333 344556
Q ss_pred CCCCcEEEEcCCCch-hhhhHHHHHhCCCeEE
Q 017153 99 FDGVDIALFSAGGSI-SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~-s~~~~~~~~~~G~~VI 129 (376)
+.++++||.|++... .......+.+.|+.|.
T Consensus 83 l~g~~LViaATdD~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 83 IKDKHLIVIATDDEKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred hCCCcEEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence 789999999998754 3444444445576654
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.096 Score=53.42 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=52.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcceEEeecCccCCCCCcEEEEcCCCchh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKAYTVEELTEDSFDGVDIALFSAGGSIS- 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s- 114 (376)
..+|+|+|+ |-+|+.+++.|..+ ...++.++ +++.. ...+.. +...+...+. .+.+.++|+||+|++....
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~--G~~~V~v~-~rs~~ra~~la~~~g~~~i~~~~l-~~~l~~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRK--GVGKILIA-NRTYERAEDLAKELGGEAVKFEDL-EEYLAEADIVISSTGAPHPI 254 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHC--CCCEEEEE-eCCHHHHHHHHHHcCCeEeeHHHH-HHHHhhCCEEEECCCCCCce
Confidence 379999998 99999999999876 33455544 33211 111111 1111111111 2234689999999976543
Q ss_pred --hhhHHHHHh---CCCeEEEcCCC
Q 017153 115 --KKFGPIAVE---KGSIVVDNSSA 134 (376)
Q Consensus 115 --~~~~~~~~~---~G~~VIDlS~~ 134 (376)
.++...... .+..+||++-+
T Consensus 255 i~~e~l~~~~~~~~~~~~viDla~P 279 (417)
T TIGR01035 255 VSKEDVERALRERTRPLFIIDIAVP 279 (417)
T ss_pred EcHHHHHHHHhcCCCCeEEEEeCCC
Confidence 344444332 24579999854
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.083 Score=51.15 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=25.2
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
++++|||.|.|+||++|+.|++.|.++++
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~ 34 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQGI 34 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 34578999999999999999999988744
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.32 Score=46.40 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=49.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec-CcceEEeecCccCC------CCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-DKAYTVEELTEDSF------DGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-~~~~~v~~~~~~~~------~~~DvVf~a~~~~ 112 (376)
|||.|+|+||+ |+.|++.|.+.+ .++.+.+......+.+... ...+....++.+.+ .+.|+|++|+-.+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPf 76 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPF 76 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHH
Confidence 58999999999 999999998763 3454433222222222221 12222223443222 3689999998776
Q ss_pred hh---hhhHHHHHhCCCeEEE
Q 017153 113 IS---KKFGPIAVEKGSIVVD 130 (376)
Q Consensus 113 ~s---~~~~~~~~~~G~~VID 130 (376)
++ ........+.|+..|.
T Consensus 77 A~~is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 77 AAQITTNATAVCKELGIPYVR 97 (256)
T ss_pred HHHHHHHHHHHHHHhCCcEEE
Confidence 53 2222333456777764
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.21 Score=55.37 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=50.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ec-CccC----CCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--EL-TEDS----FDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~-~~~~----~~~~DvVf~a~~~~ 112 (376)
|||.|.|+||++|+.+++.|.++++ ++..+.. +... .... .+.+. ++ +.+. +.++|+||.|.+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l~R-~~~~-~~~~---~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGIAR-HRPD-SWPS---SADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEC-Cchh-hccc---CceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999988643 6655542 2111 1100 11111 22 1211 36799999987542
Q ss_pred h---------hhhhHHHHHhCCC-eEEEcCCC
Q 017153 113 I---------SKKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 113 ~---------s~~~~~~~~~~G~-~VIDlS~~ 134 (376)
. +...++.+.+.|+ ++|-.|+.
T Consensus 73 ~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~ 104 (854)
T PRK05865 73 GRNDHINIDGTANVLKAMAETGTGRIVFTSSG 104 (854)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence 1 2233444455676 46666665
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.2 Score=49.14 Aligned_cols=70 Identities=24% Similarity=0.417 Sum_probs=43.1
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEee-c-C---ccCCCCCcEEEEcCCC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVEE-L-T---EDSFDGVDIALFSAGG 111 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~~-~-~---~~~~~~~DvVf~a~~~ 111 (376)
||+|+||+|.||..+.-.|..+++ ..+++.+--....|..... ......+.. . + .+++.++|+|+.+.+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 699999999999999998877622 2467665322233332211 111123332 1 1 3567899999998775
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.25 Score=47.82 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++|.|.|+||++|+.+++.|.++++ +++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~---~V~~~~ 36 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGY---TVKATV 36 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEE
Confidence 347999999999999999999988743 565444
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.28 Score=50.37 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=44.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcC-----CCC-CeEEEEEecCC--CCCceeee------cCcceEEeecCccCCCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDR-----DFP-YRSIKMLASKR--SAGKQLSF------QDKAYTVEELTEDSFDGVD 103 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~-----~~p-~~~l~~v~s~~--~~g~~~~~------~~~~~~v~~~~~~~~~~~D 103 (376)
+.+||+|+||+|.||..++-.|... +.+ ..+++.+--.. ..|..+.. ....+.+..-+.+++.++|
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaD 178 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAE 178 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCC
Confidence 4689999999999999999988754 111 12565442111 12221110 0123333333456789999
Q ss_pred EEEEcCCC
Q 017153 104 IALFSAGG 111 (376)
Q Consensus 104 vVf~a~~~ 111 (376)
+|+.+.+.
T Consensus 179 iVVitAG~ 186 (444)
T PLN00112 179 WALLIGAK 186 (444)
T ss_pred EEEECCCC
Confidence 99998776
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.21 Score=48.18 Aligned_cols=139 Identities=18% Similarity=0.201 Sum_probs=73.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cc---e-------eeecC-----------cceEEeecCcc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GK---Q-------LSFQD-----------KAYTVEELTED 97 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~---~-------~~~~~-----------~~~~v~~~~~~ 97 (376)
.||+|+|+ |.+|..+++.|+.++ .++.++...... .+ . +...+ ..+.+. .+.+
T Consensus 5 ~~V~vIG~-G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~ 79 (295)
T PLN02545 5 KKVGVVGA-GQMGSGIAQLAAAAG---MDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNLE 79 (295)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCHH
Confidence 58999999 999999999998863 466544321111 00 0 00000 012222 1234
Q ss_pred CCCCCcEEEEcCCCchh--hhhHHHH---HhCCCeEEEcCCCCCCCC---C----C-cEEeeccCHHhhcCcccCCCCCc
Q 017153 98 SFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMVE---N----V-PLVIPEVNPEAMSGIKVGMGKGA 164 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~----~-~~~lpevN~~~i~~~~~~~~~~~ 164 (376)
.+.++|+||+|.+.+.. ..+..++ ...++.++.+++...... . . -.++--+|+..... -..
T Consensus 80 ~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~------lve 153 (295)
T PLN02545 80 ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMK------LVE 153 (295)
T ss_pred HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCc------eEE
Confidence 46899999999995443 2333333 345667776777664321 0 0 12333334333221 123
Q ss_pred EEEcCCchHHHHHHHHhHHHHhCCCc
Q 017153 165 LIANPNCSTIICLMAATPLHRRAKVT 190 (376)
Q Consensus 165 iVa~PgC~~ta~~l~L~pL~~~~~i~ 190 (376)
++..+++..-.+ -.+.+|++..+-.
T Consensus 154 iv~g~~t~~e~~-~~~~~ll~~lG~~ 178 (295)
T PLN02545 154 IIRGADTSDEVF-DATKALAERFGKT 178 (295)
T ss_pred EeCCCCCCHHHH-HHHHHHHHHcCCe
Confidence 455555555443 3467887776643
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.17 Score=49.27 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=41.9
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCCCceeee--------cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAGKQLSF--------QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~g~~~~~--------~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
||+|+|+ |.+|..++..|... ... +++++.......+.... ......+...+.+++.++|+||.|++.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~--g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQ--GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 8999998 99999999998876 333 66655422221111111 011222333334457899999999886
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.25 Score=47.79 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=59.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|++|.+|+-+..+|.++ ..++....+ +. +++ .+.+.++|+|+.|+|... -.-
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~---gatVtv~~~-~t---------~~L------~~~~~~aDIvI~AtG~~~--~v~ 217 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNA---NATVTICHS-RT---------QNL------PELVKQADIIVGAVGKPE--LIK 217 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhC---CCEEEEEeC-Cc---------hhH------HHHhccCCEEEEccCCCC--cCC
Confidence 479999999889999999999875 235554432 10 011 123468999999997433 333
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
....+.|+.|||..-.. .++. ++-+++.+.+..
T Consensus 218 ~~~lk~gavViDvg~n~-~~~~---~~GDvd~~~~~~ 250 (283)
T PRK14192 218 KDWIKQGAVVVDAGFHP-RDGG---GVGDIELQGIEE 250 (283)
T ss_pred HHHcCCCCEEEEEEEee-cCCC---CcccccHHHhhc
Confidence 45678899999987542 1211 345667666653
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.19 Score=50.80 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=49.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCcee-eecC-------cceEEe-ecCcc-CCCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQL-SFQD-------KAYTVE-ELTED-SFDGVD 103 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~~-~~~~-------~~~~v~-~~~~~-~~~~~D 103 (376)
|||+|+|. ||+|.-+...++. +| ++..+.-... .|... ...+ ....+. ..++. ...++|
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~---~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH---EVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC---cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCC
Confidence 58999998 9999999987764 33 5555431111 11100 0000 011222 22222 247899
Q ss_pred EEEEcCCCchhh-------hhH----HHH--HhCCCeEEEcCCCC
Q 017153 104 IALFSAGGSISK-------KFG----PIA--VEKGSIVVDNSSAF 135 (376)
Q Consensus 104 vVf~a~~~~~s~-------~~~----~~~--~~~G~~VIDlS~~~ 135 (376)
+||.|+|..... ..+ ..+ ...|..||+-|.-.
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~ 120 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVP 120 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence 999999976321 111 111 24678888877654
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.3 Score=41.44 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=53.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCC-----------Cceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSA-----------GKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~-----------g~~~~~--------~~~~~~v~~-- 93 (376)
..||+|+|+ |-+|.++++.|... ..-++..+-.. ... |+.-.. ......+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~--Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARS--GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHH--TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHh--CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 368999999 99999999999876 33455544211 111 111000 011122221
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHH-HHHhCCCeEEEcC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNS 132 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~-~~~~~G~~VIDlS 132 (376)
++.+ .+.++|+||+|+....+..+.. .+.+.|.++|+.+
T Consensus 79 ~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 79 EKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp SHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2111 1358999999999876665555 4467888988765
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.48 Score=46.56 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=66.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC--CCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~--~~~DvVf~a~~~~~s~~ 116 (376)
.-||.|-|.||.-|.--.+...+. .-++++-+++...|+.+... .+++.+.-.+.. .++|+++.+.|.....+
T Consensus 29 ~t~v~vqGitg~~g~~h~~~~~~y---gt~iv~GV~Pgkgg~~v~~~--Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~d 103 (317)
T PTZ00187 29 NTKVICQGITGKQGTFHTEQAIEY---GTKMVGGVNPKKAGTTHLKH--GLPVFATVKEAKKATGADASVIYVPPPHAAS 103 (317)
T ss_pred CCeEEEecCCChHHHHHHHHHHHh---CCcEEEEECCCCCCceEecC--CccccCCHHHHhcccCCCEEEEecCHHHHHH
Confidence 479999999999999888877765 34677777777666655311 234432111111 24899999999999999
Q ss_pred hHHHHHhCCCe-EEEcCCCCC
Q 017153 117 FGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 117 ~~~~~~~~G~~-VIDlS~~~R 136 (376)
...++.++|++ +|-+|+-|.
T Consensus 104 ai~Ea~~aGI~~~ViiteGfp 124 (317)
T PTZ00187 104 AIIEAIEAEIPLVVCITEGIP 124 (317)
T ss_pred HHHHHHHcCCCEEEEECCCCc
Confidence 99999999988 455677663
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.24 Score=46.85 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=56.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCC-----------Cceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSA-----------GKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~-----------g~~~~~--------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.++++.|...+. -++..+- +.+.. |+.-.. ....+.+..
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv--g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV--GTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 479999999 9999999999988633 3444432 11122 221110 011233321
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
++++ .+.++|+||+|+....++.+...+ .+.++.+|+.+
T Consensus 109 ~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 109 ARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred ccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence 2221 247899999999998887766544 57788988743
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.24 Score=48.95 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=48.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|||+|. |.+|+.+.+.|... ..++.+.. ++.. .... ..... .+. +.+.++|+|++|+|.... ..
T Consensus 146 g~~VgIIG~-G~IG~~vA~~L~~~---G~~V~~~d-~~~~-~~~~----~~~~~-~~l~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 146 NMTVAIIGT-GRIGAATAKIYAGF---GATITAYD-AYPN-KDLD----FLTYK-DSVKEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEEe-CChh-Hhhh----hhhcc-CCHHHHHhcCCEEEEeCCCcHHHHH
Confidence 368999998 99999999999864 35666543 2211 1000 01111 122 235799999999998753 11
Q ss_pred hH-HHH---HhCCCeEEEcC
Q 017153 117 FG-PIA---VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS 132 (376)
.. ... .+.|+.+|+.+
T Consensus 215 li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcC
Confidence 11 122 24577777654
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.38 Score=47.00 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|+||++|+.|++.|.+++ +..++..+.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENY-NPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEc
Confidence 3789999999999999999998762 124555443
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.25 Score=47.23 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=22.7
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
|.|.||||++|..|++.|.++++ .++.++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~--~~v~~~ 29 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI--TDILVV 29 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC--ceEEEE
Confidence 57999999999999999988732 245444
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.15 Score=49.84 Aligned_cols=71 Identities=24% Similarity=0.336 Sum_probs=42.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCce--eeec---CcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LSFQ---DKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~--~~~~---~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
|||+|+|+ |++|..++..|..++. .-+++++..... .|.. +... .....+...+.+++.++|+||+|.+..
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 58999998 9999999999887621 235555532211 1211 1000 011223333445678999999998863
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.24 Score=48.14 Aligned_cols=92 Identities=12% Similarity=0.245 Sum_probs=51.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee------c-----C------cceEEeecCcc-CCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF------Q-----D------KAYTVEELTED-SFD 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~------~-----~------~~~~v~~~~~~-~~~ 100 (376)
..||+|+|+ |.+|..+...|..+++ ++.++......-..... + . ..+... .+.. .+.
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 78 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL---QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAAVS 78 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHHhc
Confidence 368999999 9999999999987643 55544321110000000 0 0 001221 1222 357
Q ss_pred CCcEEEEcCCCch--hhhhHHHH---HhCCCeEEEcCCCC
Q 017153 101 GVDIALFSAGGSI--SKKFGPIA---VEKGSIVVDNSSAF 135 (376)
Q Consensus 101 ~~DvVf~a~~~~~--s~~~~~~~---~~~G~~VIDlS~~~ 135 (376)
++|+||+|++... -.+....+ ...++.|+..++..
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~ 118 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL 118 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 8999999998864 33444443 23455555565554
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.45 Score=45.29 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=25.0
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
||.|.|+||++|+.|++.|.+++ +..++.++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEec
Confidence 58999999999999999887652 245676553
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.1 Score=46.81 Aligned_cols=95 Identities=17% Similarity=0.228 Sum_probs=55.7
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCc-----------eeeecC----------cceEEeec
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGK-----------QLSFQD----------KAYTVEEL 94 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~-----------~~~~~~----------~~~~v~~~ 94 (376)
.+..||+|||+ |..|..+...|+.++ +++.+...... ..+ ....+. ..+... .
T Consensus 5 ~~i~~V~VIGa-G~MG~gIA~~la~aG---~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~ 79 (507)
T PRK08268 5 PSIATVAVIGA-GAMGAGIAQVAAQAG---HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-E 79 (507)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-C
Confidence 34568999999 999999999998764 45654432111 111 000000 012222 2
Q ss_pred CccCCCCCcEEEEcCCCchhhhhH--H---HHHhCCCeEEEcCCCCC
Q 017153 95 TEDSFDGVDIALFSAGGSISKKFG--P---IAVEKGSIVVDNSSAFR 136 (376)
Q Consensus 95 ~~~~~~~~DvVf~a~~~~~s~~~~--~---~~~~~G~~VIDlS~~~R 136 (376)
+.+++.++|+||.|.+.+...+.. . .+...++.+..+++...
T Consensus 80 ~~~~~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~ 126 (507)
T PRK08268 80 ALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126 (507)
T ss_pred CHHHhCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 344567999999999987764432 2 22345566656677765
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.43 Score=44.87 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=61.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEe----e
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE----E 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~----~ 93 (376)
||.|+|+ |-+|.++++.|...++. ++..+- +.+..++.+-+ ...++.+. .
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg--~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFG--QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCC--eEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 5899998 99999999999887443 444332 11222221111 01122221 1
Q ss_pred cC------ccCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCCCCCcEEeecc
Q 017153 94 LT------EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVENVPLVIPEV 148 (376)
Q Consensus 94 ~~------~~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~~~~~~~lpev 148 (376)
++ .+.+.+.|+||.|++...++.+..++ ...++..||... .-+...+...+|+.
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~-~G~~G~v~vi~p~~ 138 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGT-EGFKGNAQVILPGM 138 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc-cCCceEEEEEcCCC
Confidence 21 11247899999999998888877654 577899998543 33333334455543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.23 Score=49.94 Aligned_cols=97 Identities=18% Similarity=0.311 Sum_probs=62.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCCCCcee-e----e-----------------cCcceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQL-S----F-----------------QDKAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~~g~~~-~----~-----------------~~~~~~v~ 92 (376)
..||+|+|+ |=+|..++..|... +.-++..+-. .+...+.+ . . -..++...
T Consensus 176 ~~~VaIVG~-GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 176 GQRIAIIGL-GGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred hCcEEEEcC-CccHHHHHHHHHHc--CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 469999999 88899999999987 5567766521 11111111 0 0 01112211
Q ss_pred --ecCcc---CCCCCcEEEEcCCCchhhhhHHH-HHhCCCeEEEcCCCCCCC
Q 017153 93 --ELTED---SFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 93 --~~~~~---~~~~~DvVf~a~~~~~s~~~~~~-~~~~G~~VIDlS~~~R~~ 138 (376)
.++++ .+.++|+||+|++...++.+..+ +.+.|+.+||..-.....
T Consensus 253 ~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~~ 304 (393)
T PRK06153 253 PEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLELS 304 (393)
T ss_pred eecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecceec
Confidence 22222 35789999999999999877654 457899999987666543
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.18 Score=49.97 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-C------CCceeeec--Cc----ceEEeecCc-cCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S------AGKQLSFQ--DK----AYTVEELTE-DSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~------~g~~~~~~--~~----~~~v~~~~~-~~~~~~Dv 104 (376)
++||+|+|+ |..|..+...|.+++ . ++....+. . .+...... +. .+.+. .+. +.+.++|+
T Consensus 7 ~mkI~IiGa-Ga~G~alA~~La~~g--~--v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t-~d~~~a~~~aDl 80 (341)
T PRK12439 7 EPKVVVLGG-GSWGTTVASICARRG--P--TLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRAT-TDFAEAANCADV 80 (341)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCC--C--EEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEE-CCHHHHHhcCCE
Confidence 479999999 999999999998763 2 22222111 1 01111100 00 12221 122 23568999
Q ss_pred EEEcCCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 105 ALFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
||+|+|+....+..+++. ..+..||.++.-+
T Consensus 81 Vilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 81 VVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 999999988877777664 3455677776655
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.18 Score=51.49 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeec-C-ccCCCCCcEEEEcCCCchh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEEL-T-EDSFDGVDIALFSAGGSIS- 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~-~-~~~~~~~DvVf~a~~~~~s- 114 (376)
..+|+|+|+ |-+|+.+++.|... ..-++. +.+++.. ...+..... ..+... + .+.+.++|+||+|+|....
T Consensus 182 ~~~vlViGa-G~iG~~~a~~L~~~--G~~~V~-v~~r~~~ra~~la~~~g-~~~~~~~~~~~~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 182 GKKVLVIGA-GEMGELVAKHLAEK--GVRKIT-VANRTLERAEELAEEFG-GEAIPLDELPEALAEADIVISSTGAPHPI 256 (423)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHC--CCCeEE-EEeCCHHHHHHHHHHcC-CcEeeHHHHHHHhccCCEEEECCCCCCcE
Confidence 479999998 99999999999875 222443 3343311 111111000 011111 1 1234689999999987543
Q ss_pred --hhhHHHHHh----CCCeEEEcCCC
Q 017153 115 --KKFGPIAVE----KGSIVVDNSSA 134 (376)
Q Consensus 115 --~~~~~~~~~----~G~~VIDlS~~ 134 (376)
.++.+.... .+..+||++-+
T Consensus 257 i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 257 IGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 444444331 34789999865
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.25 Score=45.12 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
.++|.|.|+||.+|++|++.|.++++
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999988744
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.23 Score=48.95 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=56.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEee-cCc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEE-LTE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~-~~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+++|+|+ |..|+..++.|... ..++-+.+.+++... +.+.. ....+.+.. .+. +...++|+|++|+++..
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~--~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~ 204 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRV--FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK 204 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC
Confidence 589999997 99999988887665 445556666654221 11110 001122221 122 33579999999998753
Q ss_pred hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.-+....++.|+.|.-.+++.
T Consensus 205 -P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 205 -PVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred -cEecHHHcCCCCEEEecCCCC
Confidence 122234567899988777653
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.15 Score=50.07 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=51.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhc-CCCCCeEEEEEecCCC-CCceeeecC--cceEEee-cCcc-CCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRS-AGKQLSFQD--KAYTVEE-LTED-SFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~-~~~p~~~l~~v~s~~~-~g~~~~~~~--~~~~v~~-~~~~-~~~~~DvVf~a~~~~ 112 (376)
..+|+|+|+ |..|+..++.+.. + +..++. +.+++. ..+.+.... ....+.. .+.+ ...++|+|++|++..
T Consensus 125 ~~~v~iiG~-G~~a~~~~~al~~~~--~~~~V~-V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 125 ASRLLVVGT-GRLASLLALAHASVR--PIKQVR-VWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred CceEEEECC-cHHHHHHHHHHHhcC--CCCEEE-EEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 579999997 9999999986654 4 544554 444431 111111110 0111221 1222 357899999999976
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
. .-+....++.|. +||..+.+
T Consensus 201 ~-pvl~~~~l~~g~-~i~~ig~~ 221 (314)
T PRK06141 201 E-PLVRGEWLKPGT-HLDLVGNF 221 (314)
T ss_pred C-CEecHHHcCCCC-EEEeeCCC
Confidence 2 112234556777 67776654
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.21 Score=47.99 Aligned_cols=89 Identities=15% Similarity=0.254 Sum_probs=50.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCc---ceEEeecC-ccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDK---AYTVEELT-EDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~---~~~v~~~~-~~~~~~~DvVf~a~~~~~ 113 (376)
..+|.|+|+ |-+|+.+++.|... ...++..+ +++. ..+.+..... .+.+ ..+ .+.+.++|+|+.|+|.+.
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~--g~~~V~v~-~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDL--GVAEITIV-NRTVERAEELAKLFGALGKAEL-DLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHc--CCCEEEEE-eCCHHHHHHHHHHhhhccceee-cccchhccccCCEEEECCcCCC
Confidence 368999998 99999999999876 33455544 4431 1111111000 0122 112 133568999999999876
Q ss_pred hh-----hhHHHHHhCCCeEEEcC
Q 017153 114 SK-----KFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 114 s~-----~~~~~~~~~G~~VIDlS 132 (376)
.. ......+..+..|+|+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEee
Confidence 42 12223344556666653
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.2 Score=48.52 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=54.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
+|||+||- |..|.-+.+.|.+.+| ++.+..-.... -......+ ........+...++|+||.|++.+..-+.+
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~---~v~v~~r~~~ka~~~~~~~G--a~~a~s~~eaa~~aDvVitmv~~~~~V~~V 74 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH---EVTVYNRTPEKAAELLAAAG--ATVAASPAEAAAEADVVITMLPDDAAVRAV 74 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC---EEEEEeCChhhhhHHHHHcC--CcccCCHHHHHHhCCEEEEecCCHHHHHHH
Confidence 58999997 9999999999988644 55544321111 11111111 111111123347899999999997664443
Q ss_pred H----HHH---hCCCeEEEcCCCC
Q 017153 119 P----IAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~----~~~---~~G~~VIDlS~~~ 135 (376)
- -+. +.|..+||+|..-
T Consensus 75 ~~g~~g~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 75 LFGENGLLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred HhCccchhhcCCCCCEEEECCCCC
Confidence 2 122 3688999999863
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.24 Score=42.35 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=29.9
Q ss_pred EEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSA 78 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~ 78 (376)
|+|+|+||-+|.+.++.+.++ | .|++++++..++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~--~d~f~v~~Lsa~~n~ 36 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH--PDKFEVVALSAGSNI 36 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC--TTTEEEEEEEESSTH
T ss_pred CEEEcCCcHHHHHHHHHHHhC--CCceEEEEEEcCCCH
Confidence 689999999999999999987 6 6999998765443
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.2 Score=51.25 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=51.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCce-eee-cC------cceEEeecCccCCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQ-LSF-QD------KAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~-~~~-~~------~~~~v~~~~~~~~~~~DvV 105 (376)
|||+|+|- ||+|.-+...|... .++..+.-... .|.. +.+ .. ..+.+.. +.+...++|++
T Consensus 7 mkI~vIGl-GyvGlpmA~~la~~----~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~-~~~~~~~advv 80 (425)
T PRK15182 7 VKIAIIGL-GYVGLPLAVEFGKS----RQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTS-EIEKIKECNFY 80 (425)
T ss_pred CeEEEECc-CcchHHHHHHHhcC----CEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEe-CHHHHcCCCEE
Confidence 78999996 99999999988752 46665532211 1111 000 00 0112221 22335789999
Q ss_pred EEcCCCchhh------hhH-------HHHHhCCCeEEEcCCCC
Q 017153 106 LFSAGGSISK------KFG-------PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 106 f~a~~~~~s~------~~~-------~~~~~~G~~VIDlS~~~ 135 (376)
|.|+|+.... +++ ...+..|..||+-|.-.
T Consensus 81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 9999976311 111 12235688899887654
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.3 Score=49.39 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=49.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
.++|+|+|. |.+|+.+++.|..- .+++.+.. +.......... ...... .+.+ .+..+|+|++++|-....+.
T Consensus 192 gktVGIvG~-G~IG~~vA~~l~~f---G~~V~~~d-r~~~~~~~~~~-~g~~~~-~~l~ell~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 192 GMTVGIVGA-GRIGLAVLRRLKPF---DVKLHYTD-RHRLPEEVEQE-LGLTYH-VSFDSLVSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEEC-CCCCchhhHhh-cCceec-CCHHHHhhcCCEEEEcCCCCHHHHH
Confidence 378999998 99999999999764 45665543 22111111000 011111 1223 35799999999997554222
Q ss_pred H---HH--HHhCCCeEEEcC
Q 017153 118 G---PI--AVEKGSIVVDNS 132 (376)
Q Consensus 118 ~---~~--~~~~G~~VIDlS 132 (376)
. +. ..+.|+.+|+.+
T Consensus 265 li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred HhCHHHHhcCCCCcEEEECC
Confidence 1 11 124566666544
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.25 Score=47.25 Aligned_cols=90 Identities=13% Similarity=0.207 Sum_probs=50.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec--C-cceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ--D-KAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~--~-~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..++.|+|+ |-+|+.++..|.+. . .++..+ +++. ..+.+... . ........+.....++|+||.|+|.+..
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~--g-~~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~ 191 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKA--D-CNVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMS 191 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHC--C-CEEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCC
Confidence 368999998 89999999999876 3 355544 3321 11111110 0 0112222222223578999999998643
Q ss_pred hhh-----HHHHHhCCCeEEEcCC
Q 017153 115 KKF-----GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 115 ~~~-----~~~~~~~G~~VIDlS~ 133 (376)
... ....+..|..|+|++.
T Consensus 192 ~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 192 GNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCHHHcCCCCEEEEecc
Confidence 221 1233456777777754
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.23 Score=54.95 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=54.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC------CCCeEEEEEecCCCCCceeeecCcc---e------EEeecCccC----
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRSAGKQLSFQDKA---Y------TVEELTEDS---- 98 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~------~p~~~l~~v~s~~~~g~~~~~~~~~---~------~v~~~~~~~---- 98 (376)
++++|+|+|. |.||+.++++|.++. .-.++++.+..++.. .+...+-+ + .....+.+.
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKM--LLDEHGIDLDNWREELAEAGEPFDLDRLIRL 540 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCcc--ccCCCCCCHHHHHHHHhhccCCCCHHHHHHH
Confidence 4699999998 999999999986541 014566666543211 11110000 0 000111111
Q ss_pred CC----CCcEEEEcCCCchhhhhHHHHHhCCCeEEE
Q 017153 99 FD----GVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 99 ~~----~~DvVf~a~~~~~s~~~~~~~~~~G~~VID 130 (376)
.. ..||+++|++......+..+++++|+.||-
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVt 576 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVT 576 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEc
Confidence 11 358999999986666666788999999994
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.75 Score=44.50 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=59.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|.-.- +-
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~---~atVtichs~T----------~~l------~~~~~~ADIvI~AvG~p~~--i~ 214 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNH---DATVTIAHSKT----------RNL------KQLTKEADILVVAVGVPHF--IG 214 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEECCCC----------CCH------HHHHhhCCEEEEccCCcCc--cC
Confidence 479999999999999999999875 34544332211 011 1223688999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+-.+ ..++ -.+-.++.+.+.
T Consensus 215 ~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~ 247 (282)
T PRK14169 215 ADAVKPGAVVIDVGISR-GADG--KLLGDVDEAAVA 247 (282)
T ss_pred HHHcCCCcEEEEeeccc-cCCC--CeeecCcHHHHH
Confidence 34567899999988764 2222 245566766665
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.36 Score=47.33 Aligned_cols=84 Identities=7% Similarity=0.083 Sum_probs=49.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-Cc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
..+|+|+|. |.+|+++.+.|..- .+++.++.......... ..+... +. +.+.++|+|++|+|.+..-.
T Consensus 136 g~tvgIvG~-G~IG~~vA~~l~af---G~~V~~~~~~~~~~~~~------~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~ 205 (312)
T PRK15469 136 DFTIGILGA-GVLGSKVAQSLQTW---GFPLRCWSRSRKSWPGV------QSFAGREELSAFLSQTRVLINLLPNTPETV 205 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEeCCCCCCCCc------eeecccccHHHHHhcCCEEEECCCCCHHHH
Confidence 379999998 99999999999864 45666553211110000 011111 12 23578999999999866532
Q ss_pred hH-H--HH--HhCCCeEEEcC
Q 017153 117 FG-P--IA--VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~-~--~~--~~~G~~VIDlS 132 (376)
.. . .+ .+.|+.+|+.+
T Consensus 206 ~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 206 GIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHhHHHHHhcCCCCcEEEECC
Confidence 21 1 11 24577777654
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.25 Score=48.71 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeec-Cc--ceEEeec-CccC-CCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQ-DK--AYTVEEL-TEDS-FDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~-~~--~~~v~~~-~~~~-~~~~DvVf~a~~~~ 112 (376)
..+|+|+|+ |..|+..++.+... +.++.+.+.+++... +.+... .. ...+... +.++ +. +|+|+.|||+.
T Consensus 129 ~~~vgiiG~-G~qa~~h~~al~~~--~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~ 204 (326)
T PRK06046 129 SKVVGIIGA-GNQARTQLLALSEV--FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR 204 (326)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhh--CCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC
Confidence 579999997 99999999988765 678888888765321 111110 00 1222211 2222 34 99999999985
Q ss_pred hhhhhHHHHHhCCCeEEEcCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
. .-+....++.|+.|.-.+++
T Consensus 205 ~-P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 K-PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred C-cEecHHHcCCCCEEEecCCC
Confidence 4 22233445789988877765
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.19 Score=49.16 Aligned_cols=90 Identities=13% Similarity=0.284 Sum_probs=53.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------Cceeee-cC----cceEEeecCc-cCC-CCCcE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSF-QD----KAYTVEELTE-DSF-DGVDI 104 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------g~~~~~-~~----~~~~v~~~~~-~~~-~~~Dv 104 (376)
|||+|+|| |.+|..+...|.+.++ ++..+ +++.. ++.... .+ ..+.+.. +. +.. .++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~---~V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~Dl 74 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI---SVNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKS-AIDEVLSDNATC 74 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC---eEEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeC-CHHHHHhCCCCE
Confidence 57999999 9999999999987643 44433 33211 001100 00 0112211 22 223 47899
Q ss_pred EEEcCCCchhhhhHHHHHh----CCCeEEEcCCCC
Q 017153 105 ALFSAGGSISKKFGPIAVE----KGSIVVDNSSAF 135 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~~~----~G~~VIDlS~~~ 135 (376)
+|+|+++....+..+++.+ ....||-+..-+
T Consensus 75 iiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 75 IILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 9999999988887776654 344566555554
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.25 Score=48.39 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=42.7
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCC--CCCceee--e----cC-cceEEeecCccCCCCCcEEEEcCC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKR--SAGKQLS--F----QD-KAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~--~~g~~~~--~----~~-~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
||+|+|+ |.||..++..|..+ +.+ +++.+--.. ..|.... + .. .+..+..-+.+++.++|+|+.+.+
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~--~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALAL--GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 6999999 99999999888766 443 676654221 2222111 1 11 133444334567889999999877
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 78 ~ 78 (307)
T cd05290 78 P 78 (307)
T ss_pred C
Confidence 5
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.29 Score=47.18 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=74.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCc---e-------ee---ecCc-----------ceEEeec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGK---Q-------LS---FQDK-----------AYTVEEL 94 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~---~-------~~---~~~~-----------~~~v~~~ 94 (376)
.||+|+|+ |.+|..+...|+.+++ ++.++.... ...+ . +. ..+. .+... .
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~---~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~ 78 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY---DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-T 78 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-C
Confidence 58999999 9999999999988744 555443111 1100 0 00 0000 01111 1
Q ss_pred CccCCCCCcEEEEcCCCchh--hhhHHHH---HhCCCeEEEcCCCCCCCC---C--Cc---EEeeccCHHhhcCcccCCC
Q 017153 95 TEDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMVE---N--VP---LVIPEVNPEAMSGIKVGMG 161 (376)
Q Consensus 95 ~~~~~~~~DvVf~a~~~~~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~--~~---~~lpevN~~~i~~~~~~~~ 161 (376)
+.+.+.++|+||+|.+.... .++..++ ...++.++.+++.+.... . .+ .++=-+|+..+..
T Consensus 79 ~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~------ 152 (291)
T PRK06035 79 SYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMK------ 152 (291)
T ss_pred CHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCc------
Confidence 22345789999999988752 3433333 345777888888765321 0 01 3333344333321
Q ss_pred CCcEEEcCCchHHHHHHHHhHHHHhCCCcEE
Q 017153 162 KGALIANPNCSTIICLMAATPLHRRAKVTRM 192 (376)
Q Consensus 162 ~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v 192 (376)
...++..+...... .-.+.++.+..+-..+
T Consensus 153 ~vEv~~g~~T~~e~-~~~~~~~~~~lgk~~v 182 (291)
T PRK06035 153 LIEVVRAALTSEET-FNTTVELSKKIGKIPI 182 (291)
T ss_pred cEEEeCCCCCCHHH-HHHHHHHHHHcCCeEE
Confidence 23355444443333 3346677776554333
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.77 Score=44.46 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=60.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....+.. .++ .+....+|+|+.|+|.-.- .-
T Consensus 158 Gk~vvViGrS~iVG~Pla~lL~~~---~atVt~chs~t----------~~l------~~~~~~ADIvI~AvG~p~~--i~ 216 (284)
T PRK14190 158 GKHVVVVGRSNIVGKPVGQLLLNE---NATVTYCHSKT----------KNL------AELTKQADILIVAVGKPKL--IT 216 (284)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEEeCCc----------hhH------HHHHHhCCEEEEecCCCCc--CC
Confidence 489999999999999999999875 34554332211 011 1234689999999876432 33
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ .+++ -.+-.++.+.++
T Consensus 217 ~~~ik~gavVIDvGi~~-~~~g--kl~GDvd~e~v~ 249 (284)
T PRK14190 217 ADMVKEGAVVIDVGVNR-LENG--KLCGDVDFDNVK 249 (284)
T ss_pred HHHcCCCCEEEEeeccc-cCCC--CeeccCcHHHHh
Confidence 45567899999988664 2221 244556766655
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.5 Score=50.50 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=25.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
|||.|.||||++|+.|++.|..++ ...++.++..
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R 34 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVR 34 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 589999999999999999888421 2446666653
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.053 Score=49.12 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=35.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC------CCCce-eee---------c--CcceEEeecCccC-CC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------SAGKQ-LSF---------Q--DKAYTVEELTEDS-FD 100 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~------~~g~~-~~~---------~--~~~~~v~~~~~~~-~~ 100 (376)
|||+|+|. ||+|.-+.-.|++++| ++.++--.. ..|+. +.+ . ...+.+.. +.+. ..
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~---~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~-~~~~ai~ 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH---QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATT-DIEEAIK 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS---EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEES-EHHHHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC---EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhh-hhhhhhh
Confidence 79999998 9999999999998754 666653211 11211 111 0 12233321 2222 46
Q ss_pred CCcEEEEcCCCchh
Q 017153 101 GVDIALFSAGGSIS 114 (376)
Q Consensus 101 ~~DvVf~a~~~~~s 114 (376)
++|++|.|.|+...
T Consensus 76 ~adv~~I~VpTP~~ 89 (185)
T PF03721_consen 76 DADVVFICVPTPSD 89 (185)
T ss_dssp H-SEEEE----EBE
T ss_pred ccceEEEecCCCcc
Confidence 89999999987543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.51 Score=43.20 Aligned_cols=92 Identities=16% Similarity=0.244 Sum_probs=56.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCC-----------Cceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSA-----------GKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~-----------g~~~~~--------~~~~~~v~--- 92 (376)
..||.|+|+ |-+|.++++.|...+. -++..+-.. +.. |+.-.. ....+.+.
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv--~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV--GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC--CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 478999998 9999999999988733 344443211 111 211100 01122222
Q ss_pred -ecCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 93 -ELTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 93 -~~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
.++.+ .+.++|+||+|++...++.+..++ .+.++.+|+.+.
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 12221 246899999999988777766654 577888888654
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.49 Score=46.66 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=53.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc---eee--------ec---C---cceEEeecCc-cCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK---QLS--------FQ---D---KAYTVEELTE-DSF 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~---~~~--------~~---~---~~~~v~~~~~-~~~ 99 (376)
..||||||+ |.+|..+...++.++ +++.+.... ....+ .+. .+ . ..+.+.. +. +.+
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~av 81 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEACV 81 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHHh
Confidence 468999998 999999999998864 456544321 11100 000 00 0 0122211 22 235
Q ss_pred CCCcEEEEcCCCchhhhhH-----HHHHhCCCeEEEcCCCCC
Q 017153 100 DGVDIALFSAGGSISKKFG-----PIAVEKGSIVVDNSSAFR 136 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~-----~~~~~~G~~VIDlS~~~R 136 (376)
.++|+|+.|.+-....+.. .++...++.+-.+|+.+.
T Consensus 82 ~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~ 123 (321)
T PRK07066 82 ADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLL 123 (321)
T ss_pred cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccC
Confidence 7999999999987653321 233345675666666664
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.14 E-value=1 Score=43.71 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=52.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|...- .-
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~---~aTVtichs~T----------~~l------~~~~~~ADIvIsAvGkp~~--i~ 213 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLRE---DATVTLAHSKT----------QDL------PAVTRRADVLVVAVGRPHL--IT 213 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEecCCcCc--cC
Confidence 479999999999999999999865 34554333221 011 1224679999999976432 23
Q ss_pred HHHHhCCCeEEEcCCCC
Q 017153 119 PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~ 135 (376)
+...+.|+.|||..-.+
T Consensus 214 ~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 214 PEMVRPGAVVVDVGINR 230 (287)
T ss_pred HHHcCCCCEEEEccCcc
Confidence 45567899999988664
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.34 Score=47.55 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceee--ec---CcceEEee-cCccCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS--FQ---DKAYTVEE-LTEDSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~--~~---~~~~~v~~-~~~~~~~~~DvVf~a~~ 110 (376)
.+||+|+|+ |.||..++-.|...+. ..+++.+--.. ..|.... .. .....+.. .+.+++.++|+|+.+.+
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~-~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG 80 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGL-ADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAG 80 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCC
Confidence 479999998 9999999998876622 34676654322 1222111 00 01113332 34556889999999876
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 81 ~ 81 (312)
T cd05293 81 A 81 (312)
T ss_pred C
Confidence 5
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.91 Score=43.96 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=60.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+-+..+|.++ ...+....+.. +++ .+....+|+|+.|+|...- .-
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~---gAtVtv~hs~t----------~~l------~~~~~~ADIvV~AvG~p~~--i~ 215 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNA---GASVSVCHILT----------KDL------SFYTQNADIVCVGVGKPDL--IK 215 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC---CCEEEEEeCCc----------HHH------HHHHHhCCEEEEecCCCCc--CC
Confidence 489999999889999999999875 34554332211 111 1234689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+.+.
T Consensus 216 ~~~vk~GavVIDvGi~~-~~~g--klvGDvd~e~v~ 248 (285)
T PRK14191 216 ASMVKKGAVVVDIGINR-LNDG--RLVGDVDFENVA 248 (285)
T ss_pred HHHcCCCcEEEEeeccc-ccCC--ceeccccHHHHh
Confidence 34567899999998765 1111 245556666655
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.16 Score=45.72 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=70.5
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cc---eeee--------c----------CcceEEeecCccC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GK---QLSF--------Q----------DKAYTVEELTEDS 98 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~---~~~~--------~----------~~~~~v~~~~~~~ 98 (376)
||+|+|+ |..|+.+...++.+ ..++.++...... .+ .+.. + ...+.+. .+.++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~---G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~ 75 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARA---GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEE 75 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHT---TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhC---CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHH
Confidence 7999999 99999999999886 3466655322111 00 0000 0 0123333 23445
Q ss_pred CCCCcEEEEcCCCchhhh--hHHHHH---hCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCCCcE
Q 017153 99 FDGVDIALFSAGGSISKK--FGPIAV---EKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGKGAL 165 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s~~--~~~~~~---~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~~~i 165 (376)
+.++|+||.|.+-....+ ...++. ...+.+..+|+.+-..+ +--.++=-+|+..+.+ -..+
T Consensus 76 ~~~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~------lVEv 149 (180)
T PF02737_consen 76 AVDADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP------LVEV 149 (180)
T ss_dssp GCTESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--------EEEE
T ss_pred HhhhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc------eEEE
Confidence 569999999998766533 223332 35778888888875432 1124555555554332 2457
Q ss_pred EEcCCchHHHHHHHHhHHHHhCCCcEE
Q 017153 166 IANPNCSTIICLMAATPLHRRAKVTRM 192 (376)
Q Consensus 166 Va~PgC~~ta~~l~L~pL~~~~~i~~v 192 (376)
|.++....-.+..+. -|.+..+-..+
T Consensus 150 v~~~~T~~~~~~~~~-~~~~~~gk~pv 175 (180)
T PF02737_consen 150 VPGPKTSPETVDRVR-ALLRSLGKTPV 175 (180)
T ss_dssp EE-TTS-HHHHHHHH-HHHHHTT-EEE
T ss_pred eCCCCCCHHHHHHHH-HHHHHCCCEEE
Confidence 777776655554443 34444443333
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.42 Score=47.07 Aligned_cols=70 Identities=16% Similarity=0.336 Sum_probs=42.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeee------cCcceEEee-cCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~------~~~~~~v~~-~~~~~~~~~DvVf~a~ 109 (376)
+.||+|+|| |.+|..+...+..+++ .+++.+--.. ..|+.+.. .+....+.. .+.+++.++|+|+.+.
T Consensus 6 ~~KI~IIGa-G~vG~~ia~~la~~gl--~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIGS-GNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECC
Confidence 469999997 9999999998887632 4655443211 11221110 111234443 3445678999999987
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 83 g~ 84 (321)
T PTZ00082 83 GL 84 (321)
T ss_pred CC
Confidence 54
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.24 Score=50.28 Aligned_cols=91 Identities=16% Similarity=0.262 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecC--ccCCCCCcEEEEcCCCch--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSI-- 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~~-- 113 (376)
..||.|+|| |-+|..+++.|.++ ...++ .++.|.. ..+.+..... ..+..++ .+.+..+|+||+||++..
T Consensus 178 ~~~vlvIGA-Gem~~lva~~L~~~--g~~~i-~IaNRT~erA~~La~~~~-~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 178 DKKVLVIGA-GEMGELVAKHLAEK--GVKKI-TIANRTLERAEELAKKLG-AEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred cCeEEEEcc-cHHHHHHHHHHHhC--CCCEE-EEEcCCHHHHHHHHHHhC-CeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 478999999 99999999999987 33444 4554432 1222221101 1122222 234578999999986643
Q ss_pred -hhhhHHHHHhC--CCeEEEcCCC
Q 017153 114 -SKKFGPIAVEK--GSIVVDNSSA 134 (376)
Q Consensus 114 -s~~~~~~~~~~--G~~VIDlS~~ 134 (376)
..+.++...+. ...+||++-+
T Consensus 253 i~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 253 ITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred cCHHHHHHHHhcccCeEEEEecCC
Confidence 33334433321 2469999876
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.48 Score=44.67 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=56.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCCCCceeee-------------------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQLSF-------------------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~~g~~~~~-------------------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.+++..|...+. -++..+-. .+..++.+-+ ....+.+..
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gv--g~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGV--GNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC--CEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 479999999 9999999999987633 34444321 1112211110 011223322
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
++.+ .+.++|+||+|++...++.+...+ .+.|+++|..+.
T Consensus 101 ~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~ 147 (240)
T TIGR02355 101 AKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAA 147 (240)
T ss_pred ccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 2221 246899999999998887766544 578899987543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.87 Score=44.03 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=60.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|.. .-.-
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~---~AtVtichs~T----------~nl------~~~~~~ADIvI~AvGk~--~~i~ 215 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLER---HATVTIAHSRT----------ADL------AGEVGRADILVAAIGKA--ELVK 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEecCCc--CccC
Confidence 479999999999999999999875 34444332211 011 12236799999999862 2333
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+-.+ + -.+-.++.+...
T Consensus 216 ~~~ik~gaiVIDvGin~~~~-g--kl~GDVd~~~v~ 248 (282)
T PRK14182 216 GAWVKEGAVVIDVGMNRLAD-G--KLVGDVEFAAAA 248 (282)
T ss_pred HHHcCCCCEEEEeeceecCC-C--CeeCCCCHHHHH
Confidence 45678899999988765212 1 255666766665
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.4 Score=46.12 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=39.7
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCC-CCcEEEEcCCCchhhh
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFD-GVDIALFSAGGSISKK 116 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~-~~DvVf~a~~~~~s~~ 116 (376)
|.|-|+||++|+.|...|..++| ++..++.+... ......... ....+ .+... ++|+|+--.|.....+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh---~v~iltR~~~~~~~~~~~~v~--~~~~~-~~~~~~~~DavINLAG~~I~~r 71 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH---QVTILTRRPPKASQNLHPNVT--LWEGL-ADALTLGIDAVINLAGEPIAER 71 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC---eEEEEEcCCcchhhhcCcccc--ccchh-hhcccCCCCEEEECCCCccccc
Confidence 57999999999999999987655 55555422111 111110000 01111 11223 6999998877766655
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.4 Score=39.37 Aligned_cols=91 Identities=19% Similarity=0.296 Sum_probs=53.7
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCCCceeee------------------cCcceEEe----ec
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSAGKQLSF------------------QDKAYTVE----EL 94 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~g~~~~~------------------~~~~~~v~----~~ 94 (376)
||+|+|+ |-+|.+++..|...+.. ++..+-.+ +..++.+.. ....+.+. .+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg--~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~ 77 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVG--NLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKI 77 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeec
Confidence 6899999 99999999999887443 34433211 122211100 01122221 22
Q ss_pred Cc----cCCCCCcEEEEcCCCchhhh-hHHHHHhC-CCeEEEcCCC
Q 017153 95 TE----DSFDGVDIALFSAGGSISKK-FGPIAVEK-GSIVVDNSSA 134 (376)
Q Consensus 95 ~~----~~~~~~DvVf~a~~~~~s~~-~~~~~~~~-G~~VIDlS~~ 134 (376)
+. +.+.++|+||+|++...++. +...+.+. ++.+|-.++.
T Consensus 78 ~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 22 12578999999998887765 34455565 8888865443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.84 Score=44.19 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-|+. +++ .+....+|+|+.|.|...- +-
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~---~atVt~chs~T----------~~l------~~~~~~ADIvIsAvGk~~~--i~ 217 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEM---NATVTLCHSKT----------QNL------PSIVRQADIIVGAVGKPEF--IK 217 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEeCCCcCc--cC
Confidence 479999999999999999999875 34544332211 011 1223689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+-.+.+ +-.++.+.+.
T Consensus 218 ~~~ik~gavVIDvGin~~~-------~GDVd~~~v~ 246 (284)
T PRK14177 218 ADWISEGAVLLDAGYNPGN-------VGDIEISKAK 246 (284)
T ss_pred HHHcCCCCEEEEecCcccc-------cCCcCHHHHh
Confidence 4456789999999876632 3345555554
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.27 Score=48.69 Aligned_cols=85 Identities=11% Similarity=0.109 Sum_probs=49.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK-K 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~-~ 116 (376)
..+|+|+|. |.+|+.+.+.|..- ..++.+. ++..... .... ...... +.+ .+.++|+|++|+|..... .
T Consensus 150 gktvgIiG~-G~IG~~vA~~l~~~---G~~V~~~-d~~~~~~-~~~~-~~~~~~--~l~ell~~aDiV~l~lP~t~~T~~ 220 (333)
T PRK13243 150 GKTIGIIGF-GRIGQAVARRAKGF---GMRILYY-SRTRKPE-AEKE-LGAEYR--PLEELLRESDFVSLHVPLTKETYH 220 (333)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEE-CCCCChh-hHHH-cCCEec--CHHHHHhhCCEEEEeCCCChHHhh
Confidence 489999998 99999999999864 3466543 3322111 0000 011111 222 357899999999975432 1
Q ss_pred hH-HHH---HhCCCeEEEcC
Q 017153 117 FG-PIA---VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS 132 (376)
.. .+. .+.|+.+|+.|
T Consensus 221 ~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 221 MINEERLKLMKPTAILVNTA 240 (333)
T ss_pred ccCHHHHhcCCCCeEEEECc
Confidence 11 111 24577777654
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.23 Score=48.93 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++||.|.|||||+|..|++.|.+++ .+++++.
T Consensus 15 ~~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d 46 (348)
T PRK15181 15 PKRWLITGVAGFIGSGLLEELLFLN---QTVIGLD 46 (348)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEe
Confidence 4799999999999999999999863 3666554
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.5 Score=46.44 Aligned_cols=70 Identities=13% Similarity=0.331 Sum_probs=42.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeee------cCcceEEee-cCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~------~~~~~~v~~-~~~~~~~~~DvVf~a~ 109 (376)
.+||+|+|| |.+|..+...|..++ ..+++.+--.. ..|..+.. .+....+.. .+.+++.++|+|+.+.
T Consensus 5 ~~KI~IIGa-G~vG~~ia~~l~~~~--~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVita 81 (319)
T PTZ00117 5 RKKISMIGA-GQIGSTVALLILQKN--LGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITA 81 (319)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCC--CCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECC
Confidence 579999998 999999999888763 24655543221 12222110 111223332 3445678999999998
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 82 g~ 83 (319)
T PTZ00117 82 GV 83 (319)
T ss_pred CC
Confidence 54
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.34 Score=45.17 Aligned_cols=83 Identities=17% Similarity=0.276 Sum_probs=49.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce-eeecCcceE-E--eecCccC-----CCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYT-V--EELTEDS-----FDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~-~~~~~~~~~-v--~~~~~~~-----~~~~DvVf~a~~ 110 (376)
|++.|+|+ |.+|..+.+.|.+.+| +++.+-.....-.. .... .+.. + ...+++. +.++|+++.+++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~---~Vv~Id~d~~~~~~~~~~~-~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH---NVVLIDRDEERVEEFLADE-LDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC---ceEEEEcCHHHHHHHhhhh-cceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 68999999 9999999999998744 56655433221111 1100 1111 1 1223221 468999999999
Q ss_pred CchhhhhHHHHH-h-CCCe
Q 017153 111 GSISKKFGPIAV-E-KGSI 127 (376)
Q Consensus 111 ~~~s~~~~~~~~-~-~G~~ 127 (376)
.+..--.+-.+. + .|++
T Consensus 76 ~d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 76 NDEVNSVLALLALKEFGVP 94 (225)
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 976544444332 3 4655
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.47 Score=46.72 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=26.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+||.|.|+||++|+.|++.|.+++ .+++++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~ 41 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATL 41 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 5899999999999999999998863 3565543
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.38 Score=49.35 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=39.6
Q ss_pred cccccccccCCCCCCCceeeecc------CCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 11 THFISKLPANKPRTKPMFTRVRM------SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..|-|.-|+....| |..|.+-- +..-+.++|.|.||||++|+.|++.|.+.+ .+++++
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~ 77 (442)
T PLN02572 14 KAFTSASPASAQST-PAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRG---YEVAIV 77 (442)
T ss_pred hhhccCCccccccc-cceecccCCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCC---CeEEEE
Confidence 45777777765544 44554411 122245899999999999999999998863 466654
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.34 Score=44.05 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEECcccHHHHHHHHHHhcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
|.|+|||||+|..|++.|.++++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~ 23 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH 23 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT
T ss_pred EEEEccCCHHHHHHHHHHHHcCC
Confidence 68999999999999999998743
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.2 Score=43.35 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=61.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|-+..+|+=|..+|.++ +..+...-|.. +++ .+....+|+|+.|.|.. .-+-
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~---~ATVtvchs~T----------~nl------~~~~~~ADIvv~AvGk~--~~i~ 225 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKA---DATVTVVHSRT----------PDP------ESIVREADIVIAAAGQA--MMIK 225 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEcCCCc--CccC
Confidence 489999999999999999999875 34555443321 011 12246889999998773 2333
Q ss_pred HHHHhCCCeEEEcCCCCCCCCC---CcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVEN---VPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~---~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+-.+..++. ..-.+-.++.+.+.
T Consensus 226 ~~~vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~e~v~ 264 (299)
T PLN02516 226 GDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVS 264 (299)
T ss_pred HHHcCCCCEEEEeeccccCcccccCCCceEcCcChHHhh
Confidence 4567789999998876532210 11245556666665
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.21 Score=50.15 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=42.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCc-eeee---------cCcc--eEEeecC-ccCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGK-QLSF---------QDKA--YTVEELT-EDSFD 100 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~-~~~~---------~~~~--~~v~~~~-~~~~~ 100 (376)
|||+|+|. ||||....-.|++++| +++++--... .|+ ++.+ .... +.+.. | .+.+.
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH---eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~a~~ 75 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH---EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEEAVK 75 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC---eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHHHHh
Confidence 78999996 9999999999998876 5655531111 111 2211 1111 33321 2 22357
Q ss_pred CCcEEEEcCCCch
Q 017153 101 GVDIALFSAGGSI 113 (376)
Q Consensus 101 ~~DvVf~a~~~~~ 113 (376)
++|++|.|+|+..
T Consensus 76 ~adv~fIavgTP~ 88 (414)
T COG1004 76 DADVVFIAVGTPP 88 (414)
T ss_pred cCCEEEEEcCCCC
Confidence 8999999988743
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.2 Score=43.12 Aligned_cols=92 Identities=17% Similarity=0.228 Sum_probs=60.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|.--- +-
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~---~atVtichs~T----------~~l------~~~~~~ADIvI~AvG~~~~--i~ 215 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNE---NATVTIAHSRT----------KDL------PQVAKEADILVVATGLAKF--VK 215 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEecCCcCc--cC
Confidence 479999999999999999998865 34554333211 011 1224688999999877432 23
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+...
T Consensus 216 ~~~vk~GavVIDvGin~-~~~g--kl~GDvdfe~~~ 248 (284)
T PRK14170 216 KDYIKPGAIVIDVGMDR-DENN--KLCGDVDFDDVV 248 (284)
T ss_pred HHHcCCCCEEEEccCcc-cCCC--CeecccchHHHH
Confidence 45567899999988765 1121 245556766655
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.83 Score=43.55 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=58.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-----CCCceee----------ecC---cce-----EEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----SAGKQLS----------FQD---KAY-----TVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-----~~g~~~~----------~~~---~~~-----~v~~~~ 95 (376)
..||+|-|+ |.||+.+++.|.+. ..+++++++.+ ..|-.+. ..+ ... .....+
T Consensus 38 g~~vaIqGf-GnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~ 113 (254)
T cd05313 38 GKRVAISGS-GNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE 113 (254)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC
Confidence 589999999 99999999999885 57888776521 1111100 000 000 011223
Q ss_pred ccC-C-CCCcEEEEc-CCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 96 EDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 96 ~~~-~-~~~DvVf~a-~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
+++ | .+|||.+-| ++.....+.++++.+.+|++|-=.+
T Consensus 114 ~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgA 154 (254)
T cd05313 114 GKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGA 154 (254)
T ss_pred CcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCC
Confidence 333 3 489988765 5777788888888888899884443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.43 Score=48.27 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=41.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s 114 (376)
.++|||+|. |.+|+.+++.|.. -..++.+. ++........ ......... +.+ .+.++|+|++++|....
T Consensus 199 gktVGIVG~-G~IG~~vA~~L~a---fG~~V~~~-d~~~~~~~~~-~~~g~~~~~-~l~ell~~sDvV~l~lPlt~~ 268 (386)
T PLN03139 199 GKTVGTVGA-GRIGRLLLQRLKP---FNCNLLYH-DRLKMDPELE-KETGAKFEE-DLDAMLPKCDVVVINTPLTEK 268 (386)
T ss_pred CCEEEEEee-cHHHHHHHHHHHH---CCCEEEEE-CCCCcchhhH-hhcCceecC-CHHHHHhhCCEEEEeCCCCHH
Confidence 479999998 9999999999976 35676543 3321111100 000111111 222 34789999999996543
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.4 Score=46.14 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=22.5
Q ss_pred EECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 44 IvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|.|++||+|+.|++.|.+++ +..++.++.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g-~~~~Vr~~d 30 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERG-YIYEVRVLD 30 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCC-CceEEEEcc
Confidence 78999999999999998873 235665443
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.8 Score=42.32 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=63.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-C--CCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~--~~DvVf~a~~~~~s~ 115 (376)
.-||.|-|-||.-|....+.+.+- .-++++-.+.+.-+..+. .++++. +..++ . ++|+++.++|.....
T Consensus 12 ~~~v~~~gi~~~~~~~~~~~~~~y---gt~~~~gV~p~~~~~~i~----G~~~y~-sv~dlp~~~~~DlAvI~vPa~~v~ 83 (300)
T PLN00125 12 NTRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHL----GLPVFN-TVAEAKAETKANASVIYVPPPFAA 83 (300)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHh---CCcEEEEECCCCCCceEc----CeeccC-CHHHHhhccCCCEEEEecCHHHHH
Confidence 379999999999999998888765 346666555443222221 233332 11222 2 379999999999999
Q ss_pred hhHHHHHhCCCe-EEEcCCCCC
Q 017153 116 KFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 116 ~~~~~~~~~G~~-VIDlS~~~R 136 (376)
+.+.++.++|++ +|-+|+-|.
T Consensus 84 ~al~e~~~~Gvk~~vIisaGf~ 105 (300)
T PLN00125 84 AAILEAMEAELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHcCCCEEEEECCCCC
Confidence 999999999988 666888884
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.25 Score=51.45 Aligned_cols=154 Identities=12% Similarity=0.144 Sum_probs=82.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeec----C-cceEEeecCccC----CCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQ----D-KAYTVEELTEDS----FDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~----~-~~~~v~~~~~~~----~~~~DvVf~a 108 (376)
+.+||+||- |..|..+.+.|.+++| ++.+.. ++ .....+... + ..+... .++++ +.++|+||+|
T Consensus 6 ~~~IG~IGL-G~MG~~mA~nL~~~G~---~V~V~N-Rt~~k~~~l~~~~~~~Ga~~~~~a-~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 6 LSRIGLAGL-AVMGQNLALNIAEKGF---PISVYN-RTTSKVDETVERAKKEGNLPLYGF-KDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCEEEEee-HHHHHHHHHHHHhCCC---eEEEEC-CCHHHHHHHHHhhhhcCCcccccC-CCHHHHHhcCCCCCEEEEE
Confidence 578999997 9999999999998744 665443 32 111111110 1 111111 12333 3459999999
Q ss_pred CCCchhhhhH-HH---HHhCCCeEEEcCCCCCCC----------CCCcEEeeccCH-HhhcCcccCCCCCcEEEcCCchH
Q 017153 109 AGGSISKKFG-PI---AVEKGSIVVDNSSAFRMV----------ENVPLVIPEVNP-EAMSGIKVGMGKGALIANPNCST 173 (376)
Q Consensus 109 ~~~~~s~~~~-~~---~~~~G~~VIDlS~~~R~~----------~~~~~~lpevN~-~~i~~~~~~~~~~~iVa~PgC~~ 173 (376)
++.+...+.+ .. .++.|-.|||.|...--+ .+..|+=.+|.. +... .....| .+|+..
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA------~~G~~i-m~GG~~ 152 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGA------RNGPSL-MPGGSF 152 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHh------cCCCeE-EecCCH
Confidence 9998764433 22 235789999999875210 012233333331 1111 123333 566666
Q ss_pred HHHHHHHhHHHHhCCCc--EEEEEEEccccccChH
Q 017153 174 IICLMAATPLHRRAKVT--RMVVSTYQAASGAGAA 206 (376)
Q Consensus 174 ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~ 206 (376)
.+. --++|+++..+-+ .--...+-|-.|+|..
T Consensus 153 ~a~-~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~ 186 (493)
T PLN02350 153 EAY-KNIEDILEKVAAQVDDGPCVTYIGPGGAGNF 186 (493)
T ss_pred HHH-HHHHHHHHHHhhhcCCCCcEEEeCCcCHHHH
Confidence 653 4467887765532 0011234566677654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.45 Score=45.81 Aligned_cols=31 Identities=13% Similarity=0.345 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|.|.|++|.+|+++++.|.+++ .++.++.
T Consensus 41 k~vlItGasggIG~~la~~La~~G---~~Vi~~~ 71 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRG---ATVVAVA 71 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 689999999999999999998863 3665443
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.7 Score=42.21 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=50.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-C-------CCceeeecCcceE--EeecCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-------AGKQLSFQDKAYT--VEELTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~-------~g~~~~~~~~~~~--v~~~~~~~~~~~DvVf~a 108 (376)
.|||+|+|+ |-+|.-+.-.|.+.++ ++..+.... . .|-.+...+.... +...+++....+|+||.|
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~---~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLA 77 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC---CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEE
Confidence 479999999 9999999988887533 455444321 1 1222211111111 111122234578999999
Q ss_pred CCCchhhhhHHHHHh---CCCeEEEc
Q 017153 109 AGGSISKKFGPIAVE---KGSIVVDN 131 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~---~G~~VIDl 131 (376)
+-+....+..+.+.. .+..||-+
T Consensus 78 vK~~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 CKAYDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred CCHHhHHHHHHHHHhhCCCCCEEEEE
Confidence 988766665555432 34445533
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.54 Score=46.38 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=24.8
Q ss_pred EEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~ 73 (376)
||+|+||+|.+|..++..|...+. ...+++.+-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD 37 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLD 37 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEe
Confidence 699999999999999998886522 122576653
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.29 Score=50.77 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=25.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||+|+|+ ||+|.-+.-.|+++++ ..++..+-
T Consensus 2 m~I~ViG~-GyvGl~~A~~lA~~g~-g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGA-GYVGGPTMAVIALKCP-DIEVVVVD 33 (473)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CCeEEEEE
Confidence 79999998 9999999999987632 45666653
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.1 Score=43.45 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=59.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+|.+..+|+=|..+|.+.+ +.+..+....+.. .++ .+....+|+|+.|.+.-.- .
T Consensus 157 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t----------~~l------~~~~~~ADIVI~AvG~p~l--i 218 (286)
T PRK14184 157 GKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT----------PDL------AEECREADFLFVAIGRPRF--V 218 (286)
T ss_pred CCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc----------hhH------HHHHHhCCEEEEecCCCCc--C
Confidence 4799999999999999999998721 1134444333211 011 1234689999999865322 2
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
-+...+.|+.|||.+-++- ++. .+-.++.+.++.
T Consensus 219 ~~~~vk~GavVIDVGi~~~-~~~---l~GDVdf~~v~~ 252 (286)
T PRK14184 219 TADMVKPGAVVVDVGINRT-DDG---LVGDCDFEGLSD 252 (286)
T ss_pred CHHHcCCCCEEEEeeeecc-CCC---ccCCccHHHHHh
Confidence 2344578999999987652 211 345566666653
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.31 Score=45.34 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=26.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|++|.+|+.+++.|.++++ ++..+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~ 42 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCD 42 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence 47999999999999999999988743 555444
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=0.64 Score=45.41 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=48.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|||+|. |.+|+++.++|..- .+++.+.. ++... .+ ......+.++ +..+|+|++++|.+..-+.
T Consensus 122 gktvgIiG~-G~IG~~vA~~l~af---G~~V~~~~-r~~~~----~~---~~~~~~~l~ell~~aDiv~~~lp~t~~T~~ 189 (303)
T PRK06436 122 NKSLGILGY-GGIGRRVALLAKAF---GMNIYAYT-RSYVN----DG---ISSIYMEPEDIMKKSDFVLISLPLTDETRG 189 (303)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEEC-CCCcc----cC---cccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence 489999998 99999999988653 45666553 32111 01 1000112233 4789999999997654221
Q ss_pred H---HHH--HhCCCeEEEcC
Q 017153 118 G---PIA--VEKGSIVVDNS 132 (376)
Q Consensus 118 ~---~~~--~~~G~~VIDlS 132 (376)
. ..+ .+.|+.+|+.|
T Consensus 190 li~~~~l~~mk~ga~lIN~s 209 (303)
T PRK06436 190 MINSKMLSLFRKGLAIINVA 209 (303)
T ss_pred CcCHHHHhcCCCCeEEEECC
Confidence 1 111 24577777654
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.1 Score=43.32 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|+||.+|+++++.|.+++ .+++.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G---~~Vv~~~ 57 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAG---AHVIVPA 57 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998863 3665543
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.42 Score=46.65 Aligned_cols=32 Identities=16% Similarity=0.397 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.|+||++|+.|++.|.++++ ++.++.
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~---~V~~~~ 40 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGY---AVNTTV 40 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCC---EEEEEE
Confidence 47899999999999999999988643 565443
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.7 Score=46.93 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=52.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~ 116 (376)
..||.|+|. |.+|..+++.|.+.+ .++... +++... ...... .. .... ..+. +.++|++|.+.|-....+
T Consensus 3 ~~~i~iiGl-G~~G~slA~~l~~~G---~~V~g~-D~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~dlvV~s~gi~~~~~ 74 (418)
T PRK00683 3 LQRVVVLGL-GVTGKSIARFLAQKG---VYVIGV-DKSLEALQSCPYI-HE-RYLE-NAEEFPEQVDLVVRSPGIKKEHP 74 (418)
T ss_pred CCeEEEEEE-CHHHHHHHHHHHHCC---CEEEEE-eCCccccchhHHH-hh-hhcC-CcHHHhcCCCEEEECCCCCCCcH
Confidence 468999999 999999999998873 244433 222111 000000 00 0111 1222 367899999987776778
Q ss_pred hHHHHHhCCCeEEE
Q 017153 117 FGPIAVEKGSIVVD 130 (376)
Q Consensus 117 ~~~~~~~~G~~VID 130 (376)
+..++.++|++++.
T Consensus 75 ~l~~A~~~g~~vv~ 88 (418)
T PRK00683 75 WVQAAIASHIPVVT 88 (418)
T ss_pred HHHHHHHCCCcEEE
Confidence 88888999998874
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.69 Score=43.31 Aligned_cols=92 Identities=23% Similarity=0.295 Sum_probs=55.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec---------------CCCCCcee---------eecCcceEEee-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------KRSAGKQL---------SFQDKAYTVEE- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s---------------~~~~g~~~---------~~~~~~~~v~~- 93 (376)
..||.|+|+ |-+|.+++..|...+. -++..+-. .+..|+.. .....++.+..
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gv--g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGV--GRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 468999999 8999999999988643 34443321 11223210 00012233321
Q ss_pred ---cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 94 ---LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 94 ---~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
++++ .+.++|+||+|+....++.+...+ .+.|+++|..+.
T Consensus 104 ~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 104 VGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 2221 146899999999987776665543 577888886443
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.1 Score=41.79 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec-------------CcceE----EeecCccC-C
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-------------DKAYT----VEELTEDS-F 99 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-------------~~~~~----v~~~~~~~-~ 99 (376)
+.+||+|.|. |.||+.+++.|.+. ..+++.+++. .|..+... ...+. ....+++. |
T Consensus 30 ~~~~v~I~G~-G~VG~~~a~~L~~~---g~~vv~v~D~--~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~ 103 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLHEA---GAKVVAVSDS--DGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELL 103 (227)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEECC--CCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccce
Confidence 3589999998 99999999999874 6788877653 22211110 00010 01122333 2
Q ss_pred -CCCcEEEEcCCC-chhhhhHHHHHhCCCeEEEcCC
Q 017153 100 -DGVDIALFSAGG-SISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 100 -~~~DvVf~a~~~-~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.++||++.|+.. ....+.++++ .|++|-=++
T Consensus 104 ~~~~Dvlip~a~~~~i~~~~~~~l---~a~~I~egA 136 (227)
T cd01076 104 ELDCDILIPAALENQITADNADRI---KAKIIVEAA 136 (227)
T ss_pred eecccEEEecCccCccCHHHHhhc---eeeEEEeCC
Confidence 489999998755 4455555554 377774443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.32 Score=50.42 Aligned_cols=153 Identities=12% Similarity=0.171 Sum_probs=80.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec----CcceEEeecCccC----CCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ----DKAYTVEELTEDS----FDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~----~~~~~v~~~~~~~----~~~~DvVf~a~~~ 111 (376)
.+|||+|. |..|..+.+.|.+++| ++.+.......-+.+... +..+... .++++ +.++|+||+|++.
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~---~V~v~dr~~~~~~~l~~~~~~~g~~i~~~-~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF---KISVYNRTYEKTEEFVKKAKEGNTRVKGY-HTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHhhhhcCCcceec-CCHHHHHhcCCCCCEEEEEeCC
Confidence 58999998 9999999999998754 555443221111111110 1111111 12222 2368988888666
Q ss_pred ch-hhhhHHHH---HhCCCeEEEcCCCCCCC----------CCCcEEeeccCH--HhhcCcccCCCCCcEEEcCCchHHH
Q 017153 112 SI-SKKFGPIA---VEKGSIVVDNSSAFRMV----------ENVPLVIPEVNP--EAMSGIKVGMGKGALIANPNCSTII 175 (376)
Q Consensus 112 ~~-s~~~~~~~---~~~G~~VIDlS~~~R~~----------~~~~~~lpevN~--~~i~~~~~~~~~~~iVa~PgC~~ta 175 (376)
+. ..+....+ ++.|..|||.+..+--+ .++.|+=.+|.. +... ... .-.+|+...+
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~-------~G~-~lm~GG~~~a 148 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGAR-------YGP-SLMPGGNKEA 148 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHh-------cCC-EEEEeCCHHH
Confidence 54 44444443 35789999999875211 012233222321 1111 222 2345666665
Q ss_pred HHHHHhHHHHhCCCcE--EEEEEEccccccChH
Q 017153 176 CLMAATPLHRRAKVTR--MVVSTYQAASGAGAA 206 (376)
Q Consensus 176 ~~l~L~pL~~~~~i~~--v~v~t~~gvSGaGr~ 206 (376)
. --+.|+++..+-+. --...+-|-.|+|..
T Consensus 149 ~-~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~ 180 (470)
T PTZ00142 149 Y-DHVKDILEKCSAKVGDSPCVTYVGPGSSGHY 180 (470)
T ss_pred H-HHHHHHHHHHhhhcCCCCeEEEECCCCHHHH
Confidence 4 44678877655320 002456666777754
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.85 Score=41.63 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----C-----------CCCceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----R-----------SAGKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~-----------~~g~~~~~--------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.++++.|...+ .-++..+-.+ + ..|++-.. ...++.++.
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~G--Vg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSG--IGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcC--CCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 559999999998863 3344444211 1 11221110 011222321
Q ss_pred --cC---ccCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 94 --LT---EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 94 --~~---~~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
++ ++.+.++|+|++|++...+.....++ .+.|+++|..+.
T Consensus 98 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~ 143 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGV 143 (197)
T ss_pred cCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 11 12257899999998876665555544 567888776543
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.5 Score=40.47 Aligned_cols=93 Identities=19% Similarity=0.329 Sum_probs=54.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCCCCceeee------------------cCcceEEe----
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQLSF------------------QDKAYTVE---- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~~g~~~~~------------------~~~~~~v~---- 92 (376)
..||+|+|+ |-+|.+++..|...+. -++..+-. .+..++...+ ....+.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gv--g~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGV--GNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 478999999 9999999999988743 34443321 1122211110 01122222
Q ss_pred ecCc----cCCCCCcEEEEcCCCchhhhh-HHHHHhC-CCeEEEcCCC
Q 017153 93 ELTE----DSFDGVDIALFSAGGSISKKF-GPIAVEK-GSIVVDNSSA 134 (376)
Q Consensus 93 ~~~~----~~~~~~DvVf~a~~~~~s~~~-~~~~~~~-G~~VIDlS~~ 134 (376)
.++. +.+.++|+||+|++...++.. ...+.+. +.++|..++.
T Consensus 105 ~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~ 152 (212)
T PRK08644 105 KIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGM 152 (212)
T ss_pred ecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehh
Confidence 1222 224689999999988777543 3455566 8888866543
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.43 Score=46.59 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=26.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.++|.|.|+||++|..|++.|.+++ .+++++.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~ 36 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAG---YKVVVID 36 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 34799999999999999999998763 3666553
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=90.42 E-value=3.3 Score=43.42 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=55.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc-----------eeeecC----------cceEEeecCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK-----------QLSFQD----------KAYTVEELTE 96 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~-----------~~~~~~----------~~~~v~~~~~ 96 (376)
..||+|||+ |..|..+...++.++| ++.+.... ....+ .+..+. ..+... .+.
T Consensus 5 ~~kV~VIGa-G~MG~gIA~~la~aG~---~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 79 (503)
T TIGR02279 5 VVTVAVIGA-GAMGAGIAQVAASAGH---QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL 79 (503)
T ss_pred ccEEEEECc-CHHHHHHHHHHHhCCC---eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH
Confidence 368999999 9999999999988644 55544311 11100 000000 012222 234
Q ss_pred cCCCCCcEEEEcCCCchhhhhH--H---HHHhCCCeEEEcCCCCCC
Q 017153 97 DSFDGVDIALFSAGGSISKKFG--P---IAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~~--~---~~~~~G~~VIDlS~~~R~ 137 (376)
+++.++|+||.|.+.....+.. . .+...++.+..+++.+..
T Consensus 80 ~~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i 125 (503)
T TIGR02279 80 HALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI 125 (503)
T ss_pred HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH
Confidence 4567999999999986553322 2 233456666668888754
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.46 Score=47.68 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceee-ecCcceEEeecCc----cCCCCCcEEEEcCCC-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS-FQDKAYTVEELTE----DSFDGVDIALFSAGG- 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~-~~~~~~~v~~~~~----~~~~~~DvVf~a~~~- 111 (376)
..+|.|+|+ |.+|+..++.+...+ .++.++. ++.. .+.+. ..+..+.....+. +.+.++|+||.|++.
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lG---a~V~v~d-~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLG---ATVTILD-INIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCC---CeEEEEE-CCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 367999999 999999999998763 3555443 3211 00110 0111111111111 224689999999732
Q ss_pred ------chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 ------SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ------~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
-...+.... .+.|..|||++.+-
T Consensus 242 g~~~p~lit~~~l~~-mk~g~vIvDva~d~ 270 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQ-MKPGAVIVDVAIDQ 270 (370)
T ss_pred CCCCCcCcCHHHHhc-CCCCCEEEEEecCC
Confidence 123444433 35789999999763
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.42 Score=47.11 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=55.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecC---cceEEeecC-c-cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQD---KAYTVEELT-E-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~---~~~~v~~~~-~-~~~~~~DvVf~a~~~~ 112 (376)
..+++|+|+ |..|+..++.|... ..++-+.+.+++.. .+.+.... ..+.+...+ . +.+.++|+|+.||+..
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~--~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLV--RDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE 205 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHh--CCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC
Confidence 468999998 99999999988643 23444445554321 11111100 012232222 2 2357899999999885
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
. .-+-...++.|..|.+..++.
T Consensus 206 ~-p~i~~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 206 T-PILHAEWLEPGQHVTAMGSDA 227 (326)
T ss_pred C-cEecHHHcCCCcEEEeeCCCC
Confidence 3 122234567899888877764
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.98 Score=44.20 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=50.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCceeeecCc--ce-EEeecCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSFQDK--AY-TVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~~~~~~~--~~-~v~~~~~~~~~~~DvVf~a~~ 110 (376)
|||+|+|+ |-+|.-+.-.|.+. + -.+..+..++. .|-.+..... .. .....+.+.+..+|+||.++-
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~--g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKA--G-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhC--C-CeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 68999999 99999999999887 3 24444432221 2333322111 11 112223445678999999999
Q ss_pred CchhhhhHHHHHh
Q 017153 111 GSISKKFGPIAVE 123 (376)
Q Consensus 111 ~~~s~~~~~~~~~ 123 (376)
+....+.++.+..
T Consensus 77 a~q~~~al~~l~~ 89 (307)
T COG1893 77 AYQLEEALPSLAP 89 (307)
T ss_pred cccHHHHHHHhhh
Confidence 9888777776653
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.6 Score=45.00 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC--------------cceE-------EeecCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD--------------KAYT-------VEELTE 96 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~--------------~~~~-------v~~~~~ 96 (376)
+..||+|.|+ |.||+.+++.|.+. ..+++++++. .|--+...+ ..+. ....+.
T Consensus 231 ~g~rVaIqGf-GnVG~~~A~~L~~~---GakVVavsDs--~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~ 304 (445)
T PRK09414 231 EGKRVVVSGS-GNVAIYAIEKAQQL---GAKVVTCSDS--SGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEG 304 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEEcC--CceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCC
Confidence 3589999999 99999999999874 5788887642 221111100 0010 011122
Q ss_pred cC-C-CCCcEEEEcC-CCchhhhhHHHHHhCCCeEEEcCC
Q 017153 97 DS-F-DGVDIALFSA-GGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 97 ~~-~-~~~DvVf~a~-~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
+. | .+|||.+-|. +.....+.+.++.+.+|++|-=.+
T Consensus 305 ~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgA 344 (445)
T PRK09414 305 GSPWSVPCDIALPCATQNELDEEDAKTLIANGVKAVAEGA 344 (445)
T ss_pred ccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCC
Confidence 33 3 4899999876 556678888888888899884443
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.81 Score=41.88 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
..+|.|.|+||.+|+.+++.|.+++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G 30 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARG 30 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC
Confidence 4689999999999999999998873
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=1.8 Score=42.27 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=61.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
...+|.|+|.+..+|+=|..+|.+++.. +..+....|+. +++ .+....+|+|+.|.|.-.-
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T----------~~l------~~~~~~ADIvVsAvGkp~~-- 221 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS----------KNL------ARHCQRADILIVAAGVPNL-- 221 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC----------cCH------HHHHhhCCEEEEecCCcCc--
Confidence 3489999999999999999999864100 34444332211 011 1224689999999865322
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCC---CCcEEeeccCHHhhcC
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVE---NVPLVIPEVNPEAMSG 155 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~---~~~~~lpevN~~~i~~ 155 (376)
+-+...+.|+.|||.+-.+-.++ +-...+-.++.+.+..
T Consensus 222 i~~~~ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe~v~~ 263 (297)
T PRK14168 222 VKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKE 263 (297)
T ss_pred cCHHHcCCCCEEEecCCCccCccccCCCcceeccccHHHHHh
Confidence 33445678999999876542111 1112566777776663
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.8 Score=42.55 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
+.+||+|.|. |.+|+.+++.|.+. ...++++++.
T Consensus 22 ~g~~vaIqGf-GnVG~~~a~~L~~~---G~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGL-GNVGWGLAKKLAEE---GGKVLAVSDP 55 (217)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc---CCEEEEEEcC
Confidence 3589999999 99999999999985 4577777643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.7 Score=41.99 Aligned_cols=91 Identities=21% Similarity=0.312 Sum_probs=58.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-|+. +++ .+....+|+|+.|.|.-.- +-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~---~AtVt~chs~T----------~~l------~~~~~~ADIvIsAvGkp~~--i~ 216 (278)
T PRK14172 158 GKEVVVIGRSNIVGKPVAQLLLNE---NATVTICHSKT----------KNL------KEVCKKADILVVAIGRPKF--ID 216 (278)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEcCCCcCc--cC
Confidence 489999999999999999999875 34554332211 011 1123678999999876432 23
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||..-.+ .+ + -.+-.++.+...
T Consensus 217 ~~~ik~gavVIDvGin~-~~-g--kl~GDvd~~~v~ 248 (278)
T PRK14172 217 EEYVKEGAIVIDVGTSS-VN-G--KITGDVNFDKVI 248 (278)
T ss_pred HHHcCCCcEEEEeeccc-cC-C--ceeeeccHHHHH
Confidence 34567899999986554 22 1 245556766665
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=90.17 E-value=2 Score=33.46 Aligned_cols=63 Identities=22% Similarity=0.456 Sum_probs=40.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF- 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~- 117 (376)
..+++|+|+ |.+|+-+++.|.+.+ ..++ .+.++ |++|.|++...--..
T Consensus 23 ~~~v~i~G~-G~~g~~~a~~l~~~~--~~~v-~v~~r---------------------------di~i~~~~~~~~~~~~ 71 (86)
T cd05191 23 GKTVVVLGA-GEVGKGIAKLLADEG--GKKV-VLCDR---------------------------DILVTATPAGVPVLEE 71 (86)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC--CCEE-EEEcC---------------------------CEEEEcCCCCCCchHH
Confidence 478999999 999999999998752 1222 22221 999999866433221
Q ss_pred HHHHHhCCCeEEEcC
Q 017153 118 GPIAVEKGSIVVDNS 132 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS 132 (376)
.-.....+..|||++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 112234577788864
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.88 Score=44.23 Aligned_cols=104 Identities=16% Similarity=0.317 Sum_probs=59.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEee----
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVEE---- 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~~---- 93 (376)
||.|+|+ |-+|.++++.|...+.. ++..+- ..+..++.+-+ ...++.+..
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg--~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFR--NIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCC--eEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 6899999 89999999999887444 333331 11222221111 011222221
Q ss_pred cC---ccCCCCCcEEEEcCCCchhhhhHHHH-HhC--------CCeEEEcCCCCCCCCCCcEEeecc
Q 017153 94 LT---EDSFDGVDIALFSAGGSISKKFGPIA-VEK--------GSIVVDNSSAFRMVENVPLVIPEV 148 (376)
Q Consensus 94 ~~---~~~~~~~DvVf~a~~~~~s~~~~~~~-~~~--------G~~VIDlS~~~R~~~~~~~~lpev 148 (376)
+. .+-+.+.|+|+.|++...++.+.... ... ++..||.+.. -+...+...+|+.
T Consensus 78 i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~-G~~G~v~vi~P~~ 143 (291)
T cd01488 78 IQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTE-GFKGHARVILPGI 143 (291)
T ss_pred cCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEc-ccEEEEEEEcCCC
Confidence 11 12247899999999998888777654 332 4677776542 2222334556665
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=89.95 E-value=1.3 Score=45.36 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=62.4
Q ss_pred EEEEECcccHHHHHHHHHHhcCCC---CCeEEEEEec----CCCCCceeee-------------------cCcceEEee-
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDF---PYRSIKMLAS----KRSAGKQLSF-------------------QDKAYTVEE- 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~---p~~~l~~v~s----~~~~g~~~~~-------------------~~~~~~v~~- 93 (376)
||.|+|+ |-+|.|+++.|...+. +.-++..+-. .+..++.+-+ ...++.+..
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 6899999 9999999999987533 1135554421 1222222111 011222321
Q ss_pred ---cCc--------cCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCCCCCcEEeecc
Q 017153 94 ---LTE--------DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVENVPLVIPEV 148 (376)
Q Consensus 94 ---~~~--------~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~~~~~~~lpev 148 (376)
+++ +-|.+.|+|+.|+..-.++.+..+. ...++..|+.. ...+...+...+|++
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g-t~G~~G~v~v~iP~~ 145 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESG-TLGTKGNTQVVIPHL 145 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe-cccceeEEEEEeCCC
Confidence 111 1246899999999998887777644 56788888743 444444445566654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.8 Score=44.54 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=58.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC-----------------cc---e----EEee
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-----------------KA---Y----TVEE 93 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~-----------------~~---~----~v~~ 93 (376)
+..||+|.|+ |.||...++.|.+. ..+++++++. .|.-+...+ .. . ....
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~---GAkVVaVSD~--~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~ 300 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLEL---GGKVVTMSDS--DGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY 300 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEECC--CCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE
Confidence 3589999999 99999999999874 6788877652 221110000 00 0 0111
Q ss_pred cCccC-C-CCCcEEEEc-CCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 94 LTEDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 94 ~~~~~-~-~~~DvVf~a-~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.+.++ | .+|||.|=| +......+.++++...||++|-=++
T Consensus 301 i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgA 343 (444)
T PRK14031 301 VEGARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVSEGA 343 (444)
T ss_pred cCCcccccCCCcEEeecccccccCHHHHHHHHhcCCeEEECCC
Confidence 12333 3 589988865 5777889999999888998884433
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=2.1 Score=41.67 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-|.. +++ .+....+|+|+.|.|.--- +-
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~---~aTVt~chs~T----------~~l------~~~~~~ADIvVsAvGkp~~--i~ 218 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGE---NCTVTTVHSAT----------RDL------ADYCSKADILVAAVGIPNF--VK 218 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCcCc--cC
Confidence 479999999999999999998875 34554333211 011 1224689999999876422 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCC-cEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENV-PLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~-~~~lpevN~~~i~ 154 (376)
....+.|+.|||..-.+ .+++- .-.+-.++.+.+.
T Consensus 219 ~~~ik~gaiVIDVGin~-~~~~~~~kl~GDvd~e~v~ 254 (294)
T PRK14187 219 YSWIKKGAIVIDVGINS-IEEGGVKKFVGDVDFAEVK 254 (294)
T ss_pred HHHcCCCCEEEEecccc-cCCCCccceeCCccHHHHh
Confidence 34467899999987554 22210 0245566766665
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.6 Score=42.74 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=25.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+.++.|.|+||.+|.++++.|.+++ .+++.+
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4689999999999999999998763 466554
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.5 Score=40.08 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=52.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCC-------------Cceeee--------cCcceEEee
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSA-------------GKQLSF--------QDKAYTVEE 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~-------------g~~~~~--------~~~~~~v~~ 93 (376)
..||.|+|+ |-+|.++++.|...+. -++..+-.+ +.. |++-.. ...++.++.
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GV--g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGI--DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 479999999 5599999999987633 344444211 111 211110 012233322
Q ss_pred cC----------ccCCCCCcEEEEcCCCchhhhhHHH-HHhCCCeEEEcCC
Q 017153 94 LT----------EDSFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSS 133 (376)
Q Consensus 94 ~~----------~~~~~~~DvVf~a~~~~~s~~~~~~-~~~~G~~VIDlS~ 133 (376)
.+ ++.|.++|+|++|.....+..+..+ ..+.++++|..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~ 146 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCAT 146 (198)
T ss_pred EecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 11 1124789999999887655555444 4567888886543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.2 Score=40.17 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=59.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....+.. +++ .+....+|+|+.|.|...- +-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~---~ATVt~chs~T----------~dl------~~~~k~ADIvIsAvGkp~~--i~ 216 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNA---KATVTTCHRFT----------TDL------KSHTTKADILIVAVGKPNF--IT 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEEcCCC----------CCH------HHHhhhcCEEEEccCCcCc--CC
Confidence 479999999999999999988875 34554332211 011 1224689999999977432 23
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ .++ -.+-.++.+.++
T Consensus 217 ~~~vk~gavVIDvGin~-~~g---kl~GDvd~~~v~ 248 (282)
T PRK14180 217 ADMVKEGAVVIDVGINH-VDG---KIVGDVDFAAVK 248 (282)
T ss_pred HHHcCCCcEEEEecccc-cCC---ceeCCcCHHHHH
Confidence 35567899999988765 221 245566766665
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.63 Score=42.70 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++.|.|++|.+|..+++.|.+++ .+++.+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G---~~Vi~~~ 38 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEG---VNVGLLA 38 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998863 3666544
|
|
| >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.5 Score=47.50 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=31.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSA 78 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~ 78 (376)
+||+|+|+||-+|.+.++.+..+ |+ +++++++..+..
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~--~~~f~v~~Laa~~n~ 39 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHN--PDHFQVVALSAGKNV 39 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhC--ccccEEEEEEcCCCH
Confidence 58999999999999999999876 54 999988765443
|
1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.5 Score=43.38 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+++.|.+++ .++..+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~ 37 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG---AEVIVVD 37 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998873 3665554
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.8 Score=44.93 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=39.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+++.+++..- ..++.+. ++.. .... ......+ .+.+..+|+|++++|-+.
T Consensus 147 gktvgIiG~-G~IG~~va~~l~~f---g~~V~~~-~~~~-~~~~-----~~~~~~l-~ell~~sDiv~l~~Plt~ 209 (314)
T PRK06932 147 GSTLGVFGK-GCLGTEVGRLAQAL---GMKVLYA-EHKG-ASVC-----REGYTPF-EEVLKQADIVTLHCPLTE 209 (314)
T ss_pred CCEEEEECC-CHHHHHHHHHHhcC---CCEEEEE-CCCc-cccc-----ccccCCH-HHHHHhCCEEEEcCCCCh
Confidence 479999998 99999999998653 4566544 3221 1110 0011111 123578999999999654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.71 Score=42.07 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
.++|.|.|++|++|+.+++.|.++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~ 30 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA 30 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 47899999999999999999988743
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.79 Score=44.78 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=41.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceee--ec----CcceEEe-ecCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS--FQ----DKAYTVE-ELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~--~~----~~~~~v~-~~~~~~~~~~DvVf~a~~ 110 (376)
+||+|+|+ |++|..+...|+.+++ .+++++-.... .|+.+. .. .....+. ..+.+++.++|+||.|.|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~--~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKEL--ADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCC--CeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCC
Confidence 68999998 9999999999888633 25555432211 122111 00 0011222 123344789999999988
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 79 ~ 79 (305)
T TIGR01763 79 L 79 (305)
T ss_pred C
Confidence 4
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.56 Score=49.34 Aligned_cols=86 Identities=9% Similarity=0.136 Sum_probs=51.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~ 116 (376)
..+|+|+|. |.+|+.+.+.|... ..++.+........+.... ..... +.+ .+..+|+|++|+|.+.. ..
T Consensus 140 gktvgIiG~-G~IG~~vA~~l~~f---G~~V~~~d~~~~~~~~~~~---g~~~~--~l~ell~~aDiV~l~lP~t~~t~~ 210 (526)
T PRK13581 140 GKTLGIIGL-GRIGSEVAKRAKAF---GMKVIAYDPYISPERAAQL---GVELV--SLDELLARADFITLHTPLTPETRG 210 (526)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEECCCCChhHHHhc---CCEEE--cHHHHHhhCCEEEEccCCChHhhc
Confidence 478999998 99999999999764 4566654321111110001 11121 223 35789999999998643 22
Q ss_pred hH--HH--HHhCCCeEEEcCC
Q 017153 117 FG--PI--AVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~~--~~~~G~~VIDlS~ 133 (376)
.. .. ..+.|+.+|+.+-
T Consensus 211 li~~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 211 LIGAEELAKMKPGVRIINCAR 231 (526)
T ss_pred CcCHHHHhcCCCCeEEEECCC
Confidence 22 11 1356888887764
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.3 Score=45.68 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=58.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceee-ecCcceEEe--ecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS-FQDKAYTVE--ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~-~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~s 114 (376)
.+||+|+|- |..|+.+++.|.+++ .++.+.-.+... +.... .....+.+. ..+.++|..+|+|+..-|-...
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G---~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLG---AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCC---CeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCC
Confidence 489999998 999999999999863 455544322222 11000 001223332 2223456789999999887777
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
..++.++.++|++|+
T Consensus 83 ~p~v~~A~~~gi~i~ 97 (448)
T COG0771 83 HPLVEAAKAAGIEII 97 (448)
T ss_pred CHHHHHHHHcCCcEE
Confidence 788889999999988
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=1.3 Score=45.18 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=54.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce---eee-cCcceEEeecC-c-cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ---LSF-QDKAYTVEELT-E-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~---~~~-~~~~~~v~~~~-~-~~~~~~DvVf~a~~~~ 112 (376)
.++|.|+|+ |.+|..+.+.|++++ .++.+.. ++..... ... ....+.+...+ . +...++|+||.+++..
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G---~~V~~~d-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLG---AKVILTD-EKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVP 79 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEe-CCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCC
Confidence 489999999 559999999999874 3555443 2211100 000 00112222111 1 2235799999998877
Q ss_pred hhhhhHHHHHhCCCeEEEcC
Q 017153 113 ISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS 132 (376)
...+....+.+.|+.|+.-.
T Consensus 80 ~~~~~~~~a~~~~i~~~~~~ 99 (450)
T PRK14106 80 LDSPPVVQAHKKGIEVIGEV 99 (450)
T ss_pred CCCHHHHHHHHCCCcEEeHH
Confidence 66677777788899887543
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.66 Score=48.82 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=51.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~ 116 (376)
..+|||+|. |.+|+++.+.|... ..++.+.. +.......... .....+ +.+ .+.++|+|++|+|.... ..
T Consensus 138 gktvgIiG~-G~IG~~vA~~l~~f---G~~V~~~d-~~~~~~~~~~~--g~~~~~-~l~ell~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 138 GKTLGVIGL-GRIGSIVAKRAKAF---GMKVLAYD-PYISPERAEQL--GVELVD-DLDELLARADFITVHTPLTPETRG 209 (525)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEEC-CCCChhHHHhc--CCEEcC-CHHHHHhhCCEEEEccCCChhhcc
Confidence 378999998 99999999999764 35665543 22111110000 111111 222 35789999999997632 22
Q ss_pred hH--HHH--HhCCCeEEEcCC
Q 017153 117 FG--PIA--VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~~~--~~~G~~VIDlS~ 133 (376)
+. +.+ .+.|+.+|+.+-
T Consensus 210 li~~~~l~~mk~ga~lIN~aR 230 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCAR 230 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCC
Confidence 22 222 356888887764
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.12 E-value=1.2 Score=44.29 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=55.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCCCcee-------------e--------ecCcceEEee
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSAGKQL-------------S--------FQDKAYTVEE 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~g~~~-------------~--------~~~~~~~v~~ 93 (376)
..||.|+|+ |-+|..+++.|...++. ++..+-.+ +..++.. . ....++.++.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg--~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIG--KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC--EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 478999999 88999999999886432 44433211 1111110 0 0012233322
Q ss_pred ----cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 ----LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 ----~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
.+++ .+.++|+||.|++...+..+...+ .+.|+++|..+
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 101 VVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred EeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2211 246899999999998887766654 46788888654
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.73 Score=47.80 Aligned_cols=152 Identities=15% Similarity=0.231 Sum_probs=79.2
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec---CcceEEeecCccC----CCCCcEEEEcCCCch
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ---DKAYTVEELTEDS----FDGVDIALFSAGGSI 113 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~---~~~~~v~~~~~~~----~~~~DvVf~a~~~~~ 113 (376)
+|||+|. |..|..+.+.|.+++| ++.+.......-+.+... +..+.... ++++ +.++|+||+|++.+.
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~---~V~v~drt~~~~~~l~~~~~~g~~~~~~~-s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF---TVSVYNRTPEKTDEFLAEHAKGKKIVGAY-SIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHhhccCCCCceecC-CHHHHHhhcCCCCEEEEECCCcH
Confidence 4899997 9999999999998754 555443211111111111 11111111 2222 346899999998853
Q ss_pred -hhhhHHHH---HhCCCeEEEcCCCCCCC----------CCCcEEeeccCH--HhhcCcccCCCCCcEEEcCCchHHHHH
Q 017153 114 -SKKFGPIA---VEKGSIVVDNSSAFRMV----------ENVPLVIPEVNP--EAMSGIKVGMGKGALIANPNCSTIICL 177 (376)
Q Consensus 114 -s~~~~~~~---~~~G~~VIDlS~~~R~~----------~~~~~~lpevN~--~~i~~~~~~~~~~~iVa~PgC~~ta~~ 177 (376)
..+....+ ++.|-.|||.|..+--+ .+..|+=-+|.. +... .... -.+|+...+.
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~-------~G~~-im~GG~~~a~- 146 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGAR-------KGPS-IMPGGSAEAW- 146 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHh-------cCCc-CCCCCCHHHH-
Confidence 44444444 35688999999754110 012232222221 1111 1222 2466666554
Q ss_pred HHHhHHHHhCCCcE--EEEEEEccccccChH
Q 017153 178 MAATPLHRRAKVTR--MVVSTYQAASGAGAA 206 (376)
Q Consensus 178 l~L~pL~~~~~i~~--v~v~t~~gvSGaGr~ 206 (376)
-.+.|+++..+-+- .-...+-|-.|+|..
T Consensus 147 ~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~ 177 (467)
T TIGR00873 147 PLVAPIFQKIAAKVDGEPCCTWIGPDGAGHY 177 (467)
T ss_pred HHHHHHHHHHhhhcCCCCceEEECCcCHHHH
Confidence 44778877654321 112356676777754
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.4 Score=48.03 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=57.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCcee----------ee--------cCcceEEee---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQL----------SF--------QDKAYTVEE--- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~----------~~--------~~~~~~v~~--- 93 (376)
..||+|+|+ | +|..++..|...+- .-++..+- ..++..+.+ .. ....+.++.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGv-vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGL-CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccC-CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 579999999 9 89999999987631 12444331 112222210 00 012233332
Q ss_pred -cCccC----CCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCC
Q 017153 94 -LTEDS----FDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSA 134 (376)
Q Consensus 94 -~~~~~----~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~ 134 (376)
++++. +.++|+||+|++...++-....+ .+.|+.+|..+++
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22222 36899999999998887777644 5789999987764
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.81 Score=44.23 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=40.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee----cCcceEEeecC--ccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF----QDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~----~~~~~~v~~~~--~~~~~~~DvVf~a~~~~ 112 (376)
.+|.|+|+ |-+|+.++..|... ..-++..+ +++. ..+.+.. ......+...+ .+.+.++|+|+.|+|.+
T Consensus 128 k~vlIlGa-GGaaraia~aL~~~--G~~~I~I~-nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 128 ERVVQLGA-GGAGAAVAHALLTL--GVERLTIF-DVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CEEEEECC-cHHHHHHHHHHHHc--CCCEEEEE-CCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 68999999 88999999999876 33345433 3321 1111111 01112222222 12346799999999876
Q ss_pred h
Q 017153 113 I 113 (376)
Q Consensus 113 ~ 113 (376)
.
T Consensus 204 m 204 (284)
T PRK12549 204 M 204 (284)
T ss_pred C
Confidence 4
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.9 Score=40.58 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=25.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++.|.|+||.+|+++.+.|.+++ .++.++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G---~~V~~~~ 34 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQG---YTVYGAA 34 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998763 3665544
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=1.2 Score=45.86 Aligned_cols=87 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcceEEe-ecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKAYTVE-ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~~~v~-~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|.|+|+ |.+|.++++.|.+++ .++..+..+... ...+.. ....+.+. ........++|+|+.+.+..-.
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G---~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELG---ARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPD 91 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCC
Confidence 368999999 999999999998863 466554322211 111100 01123332 1112223578999999887766
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+....+.+.|+.|+
T Consensus 92 ~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 92 APLLAAAADAGIPVW 106 (480)
T ss_pred CHHHHHHHHCCCeec
Confidence 667777788898886
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=2.4 Score=41.00 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=59.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-+ .. +++ .+....+|+|+.|+|...- +-
T Consensus 157 Gk~vvViGrS~~VG~Pla~lL~~~---~AtVti~hs-~T---------~~l------~~~~~~ADIvV~AvGkp~~--i~ 215 (281)
T PRK14183 157 GKDVCVVGASNIVGKPMAALLLNA---NATVDICHI-FT---------KDL------KAHTKKADIVIVGVGKPNL--IT 215 (281)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCC-CC---------cCH------HHHHhhCCEEEEecCcccc--cC
Confidence 479999999999999999988865 344442221 11 111 1224689999999976432 23
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+-.+- .++ -.+-.++.+...
T Consensus 216 ~~~vk~gavvIDvGin~~-~~g--kl~GDVd~~~~~ 248 (281)
T PRK14183 216 EDMVKEGAIVIDIGINRT-EDG--RLVGDVDFENVA 248 (281)
T ss_pred HHHcCCCcEEEEeecccc-CCC--CeECCccHHHHH
Confidence 345678999999886542 121 245566766665
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.32 Score=46.83 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=47.6
Q ss_pred EECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hhhH--
Q 017153 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KKFG-- 118 (376)
Q Consensus 44 IvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~~~-- 118 (376)
|+|. |.+|..+.+.|.+.+| ++.+. +++.. -+.+... ...... ++. ...++|+||+|+|.... .+..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~--g~~~~~-s~~~~~~~advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH---PVRVF-DLFPDAVEEAVAA--GAQAAA-SPAEAAEGADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHc--CCeecC-CHHHHHhcCCEEEEeCCChHHHHHHHcC
Confidence 4786 9999999999987644 55433 33211 0111111 111111 222 34789999999998543 3333
Q ss_pred -HHH---HhCCCeEEEcCCC
Q 017153 119 -PIA---VEKGSIVVDNSSA 134 (376)
Q Consensus 119 -~~~---~~~G~~VIDlS~~ 134 (376)
..+ ...|..|||.|.-
T Consensus 73 ~~~l~~~~~~g~~vid~st~ 92 (288)
T TIGR01692 73 DEGILPKVAKGSLLIDCSTI 92 (288)
T ss_pred cchHhhcCCCCCEEEECCCC
Confidence 222 2457789998854
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.63 Score=45.81 Aligned_cols=80 Identities=8% Similarity=0.061 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEecCCCCC-----ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhh-hhHHHH--
Q 017153 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSAG-----KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK-KFGPIA-- 121 (376)
Q Consensus 50 ~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-----~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~-~~~~~~-- 121 (376)
|.|.-+.+.|...+| ++.+....+..- ..+...+ ....+...+...++|+||+|+|.+... +....+
T Consensus 30 ~gGspMArnLlkAGh---eV~V~Drnrsa~e~e~~e~LaeaG--A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 30 YGGSRMAIEFAMAGH---DVVLAEPNREFMSDDLWKKVEDAG--VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred CCHHHHHHHHHHCCC---EEEEEeCChhhhhhhhhHHHHHCC--CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 677888888877544 555443211110 0111111 122221123346899999999987653 333322
Q ss_pred -HhCCCeEEEcCCC
Q 017153 122 -VEKGSIVVDNSSA 134 (376)
Q Consensus 122 -~~~G~~VIDlS~~ 134 (376)
...|..|||.|.-
T Consensus 105 ~L~~GaIVID~STI 118 (341)
T TIGR01724 105 HVPENAVICNTCTV 118 (341)
T ss_pred cCCCCCEEEECCCC
Confidence 2468889988764
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=88.70 E-value=1.1 Score=44.06 Aligned_cols=89 Identities=17% Similarity=0.320 Sum_probs=54.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEe----e
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE----E 93 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~----~ 93 (376)
||.|+|+ |-+|.|+++.|...+. -++..+- ..+..++.+-+ ....+.+. .
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv--g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF--GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC--CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 6899999 9999999999887643 3343331 11122221110 01122222 1
Q ss_pred cCc-----cCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 LTE-----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 ~~~-----~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
+.. +.|.+.|+|+.|+....++.+..++ ...++.+||..
T Consensus 78 i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~g 122 (312)
T cd01489 78 IKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESG 122 (312)
T ss_pred CCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 211 2247899999999998887777655 57788899854
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=88.63 E-value=1.3 Score=44.04 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=47.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF- 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~- 117 (376)
..||.|+|+ |-+|+..++.|.+++ .-++ .+++|...- ..+. +..... ..-+..+|+||+|++.+.+...
T Consensus 174 ~k~vLvIGa-Gem~~l~a~~L~~~g--~~~i-~v~nRt~~~--~~~~--~~~~~~--~~~~~~~DvVIs~t~~Tas~~p~ 243 (338)
T PRK00676 174 KASLLFIGY-SEINRKVAYYLQRQG--YSRI-TFCSRQQLT--LPYR--TVVREE--LSFQDPYDVIFFGSSESAYAFPH 243 (338)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHcC--CCEE-EEEcCCccc--cchh--hhhhhh--hhcccCCCEEEEcCCcCCCCCce
Confidence 479999999 999999999999873 2333 355554321 1111 110000 0123678999998543222111
Q ss_pred -HHHHHhC--CCeEEEcCCC
Q 017153 118 -GPIAVEK--GSIVVDNSSA 134 (376)
Q Consensus 118 -~~~~~~~--G~~VIDlS~~ 134 (376)
.....+. .-.+||++=+
T Consensus 244 i~~~~~~~~~~r~~iDLAvP 263 (338)
T PRK00676 244 LSWESLADIPDRIVFDFNVP 263 (338)
T ss_pred eeHHHHhhccCcEEEEecCC
Confidence 1111111 1358999866
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.82 Score=45.48 Aligned_cols=79 Identities=5% Similarity=0.075 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEecCCCC--C----ceeeecCcceEEeecCccCCCCCcEEEEcCCCch-hhhhHHHHH
Q 017153 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSA--G----KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKFGPIAV 122 (376)
Q Consensus 50 ~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g----~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~-s~~~~~~~~ 122 (376)
|.|..+...|.+++| ++.+.. ++.. . ..+.. ..+.+.....+...++|+||+|+|... ..+....+.
T Consensus 30 ~gG~~MA~~La~aG~---~V~v~D-r~~~~l~~~~~~~l~~--~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~ 103 (342)
T PRK12557 30 YGGSRMAIEFAEAGH---DVVLAE-PNRSILSEELWKKVED--AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNIL 103 (342)
T ss_pred cCHHHHHHHHHhCCC---eEEEEE-CCHHHhhHHHHHHHHH--CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHH
Confidence 678888888877644 454443 3211 0 01111 112322211223478999999999887 555555443
Q ss_pred ---hCCCeEEEcCCC
Q 017153 123 ---EKGSIVVDNSSA 134 (376)
Q Consensus 123 ---~~G~~VIDlS~~ 134 (376)
..|..|||.|.-
T Consensus 104 ~~L~~g~IVId~ST~ 118 (342)
T PRK12557 104 PHLPENAVICNTCTV 118 (342)
T ss_pred hhCCCCCEEEEecCC
Confidence 468889998863
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=88.61 E-value=0.69 Score=48.38 Aligned_cols=92 Identities=20% Similarity=0.372 Sum_probs=51.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------CCcee-eec----C---cceE--E-eecC-----
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AGKQL-SFQ----D---KAYT--V-EELT----- 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------~g~~~-~~~----~---~~~~--v-~~~~----- 95 (376)
.-||.|+|+ |.+|...++.+...+ .++.++..+.. .|-.. ... + ..+. + .+..
T Consensus 164 ~akVlViGa-G~iGl~Aa~~ak~lG---A~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 164 PAKVLVIGA-GVAGLAAIGAANSLG---AIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence 369999999 999999999888762 34444432211 11100 000 0 0000 0 0000
Q ss_pred --ccCCCCCcEEEEcC-----CC--chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 96 --EDSFDGVDIALFSA-----GG--SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 96 --~~~~~~~DvVf~a~-----~~--~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.+...++|+||.|. +. -.+++.. +..+.|..|||++.+-
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv-~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMV-DSMKAGSVIVDLAAEQ 287 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCCeeehHHHH-hhCCCCCEEEEeeeCC
Confidence 11246899999998 22 2444443 3456899999999874
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.56 E-value=1.3 Score=42.78 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
|||.|.|++|.+|.+|.+.|. +..++.++..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~----~~~~v~a~~~ 31 (281)
T COG1091 1 MKILITGANGQLGTELRRALP----GEFEVIATDR 31 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC----CCceEEeccC
Confidence 459999999999999999886 3467766643
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.7 Score=42.43 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=26.9
Q ss_pred CCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCC
Q 017153 99 FDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~ 138 (376)
+.++|+||+|++...++-+...+ ...+..+|+ +...++
T Consensus 106 i~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~--aalGfd 144 (307)
T cd01486 106 IKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN--AALGFD 144 (307)
T ss_pred HhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE--EEeccc
Confidence 36899999999999887555444 356778886 344443
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=88.53 E-value=1.7 Score=43.62 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=56.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.+++..|... ..-++..+- ..+..++.+-+ ....+.++.
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~--Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASA--GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHc--CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 479999999 99999999999876 333555442 12222222111 011223322
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
++++ .+.++|+||+|++...++.+...+ ...|+.+|..+
T Consensus 118 ~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~ 163 (370)
T PRK05600 118 ERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGT 163 (370)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2221 246899999999998888777655 46788877554
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.66 Score=42.94 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=25.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|.|.|+||.+|+.+++.|.+++ .+++++.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~ 33 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG---HNVIAGV 33 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 579999999999999999998863 4565544
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.71 Score=45.33 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=26.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++|.|.||||++|+.|++.|.+++ .+++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~ 36 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG---YTVRATV 36 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEE
Confidence 45799999999999999999998863 3665543
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=0.55 Score=51.92 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=54.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC-------CCCeEEEEEecCCCC-Cce--eee-----cCcceEEeecCcc----C
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSA-GKQ--LSF-----QDKAYTVEELTED----S 98 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~-------~p~~~l~~v~s~~~~-g~~--~~~-----~~~~~~v~~~~~~----~ 98 (376)
++++|+|+|. |.||+.++++|.++. .-.++++.++.++.. -+. +.. ...+. ....+.+ .
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~-~~~~~~~~~~e~ 534 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDE-AVEWDEESLFLW 534 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhh-cCCccHHHHHHH
Confidence 3699999998 999999999986541 024677777643321 010 000 00000 0001111 1
Q ss_pred CC----CCcEEEEcCCCchhhhhHHHHHhCCCeEEEc
Q 017153 99 FD----GVDIALFSAGGSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 99 ~~----~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDl 131 (376)
+. ..+++++|++..........++++|+.||-.
T Consensus 535 i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVta 571 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISA 571 (810)
T ss_pred HhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcC
Confidence 11 2369999999876666667889999999943
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.81 Score=46.14 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=40.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+.+.+.|..- .+++.+. ++..... .....+. +.++ +.++|+|++++|-..
T Consensus 116 gktvGIIG~-G~IG~~vA~~l~a~---G~~V~~~-dp~~~~~-----~~~~~~~--~L~ell~~sDiI~lh~PLt~ 179 (378)
T PRK15438 116 DRTVGIVGV-GNVGRRLQARLEAL---GIKTLLC-DPPRADR-----GDEGDFR--SLDELVQEADILTFHTPLFK 179 (378)
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEE-CCccccc-----ccccccC--CHHHHHhhCCEEEEeCCCCC
Confidence 479999998 99999999999864 4566544 3211100 0001111 2233 468999999998654
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.2 Score=42.60 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=23.5
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
||.|.|+||++|+.+++.|.++++ ++..+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~---~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH---EVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC---eEEEE
Confidence 588999999999999999988643 45444
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.25 E-value=1.8 Score=44.52 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=52.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc------eeeecCcceEEe-ec-CccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK------QLSFQDKAYTVE-EL-TEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~------~~~~~~~~~~v~-~~-~~~~~~~~DvVf~a~~~ 111 (376)
.||+|+|. |..|+.+++.|.+.+ .++... +.+.... .+.. ..+.+. .. .++.+.++|+|+-..+-
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~~~G---~~V~~~-D~~~~~~~~~~~~~l~~--~gi~~~~~~~~~~~~~~~dlVV~Spgi 87 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVKLG---AKVTAF-DKKSEEELGEVSNELKE--LGVKLVLGENYLDKLDGFDVIFKTPSM 87 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHHHCC---CEEEEE-CCCCCccchHHHHHHHh--CCCEEEeCCCChHHhccCCEEEECCCC
Confidence 68999998 999999999998873 355433 2221111 1111 123332 11 13345678999887554
Q ss_pred chhhhhHHHHHhCCCeEEE
Q 017153 112 SISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VID 130 (376)
....+...++.+.|+.|+.
T Consensus 88 ~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 88 RIDSPELVKAKEEGAYITS 106 (458)
T ss_pred CCCchHHHHHHHcCCcEEe
Confidence 4555666777789999984
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.21 E-value=0.89 Score=44.03 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=51.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCC--Cchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAG--GSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~--~~~s~~ 116 (376)
..+|.|+|.+..+|+-|..+|.++ +..+....+.. +++ .+....+|++|.|.| ..+..
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~---~atVtv~hs~T----------~~l------~~~~~~ADIvi~avG~p~~v~~- 218 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA---GCTVTVCHRFT----------KNL------RHHVRNADLLVVAVGKPGFIPG- 218 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC---CCeEEEEECCC----------CCH------HHHHhhCCEEEEcCCCcccccH-
Confidence 489999999999999999999875 34554443321 011 123468999999994 44443
Q ss_pred hHHHHHhCCCeEEEcCCCC
Q 017153 117 FGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~ 135 (376)
...+.|+.|||.+-.+
T Consensus 219 ---~~vk~gavVIDvGin~ 234 (285)
T PRK10792 219 ---EWIKPGAIVIDVGINR 234 (285)
T ss_pred ---HHcCCCcEEEEccccc
Confidence 4567899999988543
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=3.9 Score=39.62 Aligned_cols=93 Identities=17% Similarity=0.207 Sum_probs=58.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.++.+|+=|..+|.++. .+..+....|.. +++ .+....+|+|+.|.|.-.- +-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~-~~atVtvchs~T----------~~l------~~~~k~ADIvV~AvGkp~~--i~ 218 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRS-ENATVTLCHTGT----------RDL------AAHTRRADIIVAAAGVAHL--VT 218 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhcc-CCCEEEEeCCCC----------CCH------HHHHHhCCEEEEecCCcCc--cC
Confidence 4899999999999999999998631 134444332211 011 1224689999999877522 33
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++ +...
T Consensus 219 ~~~ik~GavVIDvGin~-~~~g--kl~GDvd-~~v~ 250 (284)
T PRK14193 219 ADMVKPGAAVLDVGVSR-AGDG--KLVGDVH-PDVW 250 (284)
T ss_pred HHHcCCCCEEEEccccc-cCCC--cEEeecC-HhHH
Confidence 45567899999988664 2222 2455666 4444
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.00 E-value=1.1 Score=43.67 Aligned_cols=95 Identities=20% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|.. +++ .+....+|+|+.|.|... -+-
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~---~atVtv~hs~T----------~~l------~~~~~~ADIvIsAvGkp~--~i~ 216 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAA---NATVTIAHSRT----------QDL------ASITREADILVAAAGRPN--LIG 216 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCcC--ccC
Confidence 489999999999999999999875 34554333211 011 122367999999988642 233
Q ss_pred HHHHhCCCeEEEcCCCCCCCCC-CcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVEN-VPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~-~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+--++. .--.+-.++.+.+.
T Consensus 217 ~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~~~v~ 253 (297)
T PRK14186 217 AEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDFEEVE 253 (297)
T ss_pred HHHcCCCCEEEEeccccccccccCCceeCCccHHHHH
Confidence 4566789999998876521110 01245567766665
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=87.98 E-value=0.78 Score=45.24 Aligned_cols=92 Identities=16% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec---CcceEEeec-Cc-cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ---DKAYTVEEL-TE-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~---~~~~~v~~~-~~-~~~~~~DvVf~a~~~~ 112 (376)
..+++|+|+ |..|+..+..+... ..++-+.+.+++.. .+.+... ...+.+... +. +.+.++|+|+.|++..
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~--~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLV--RPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 469999998 99999988888753 23444445554321 1111110 001233222 22 2357899999999885
Q ss_pred hhhhhH-HHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFG-PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~-~~~~~~G~~VIDlS~~~ 135 (376)
. ... ...++.|..|....++.
T Consensus 209 ~--p~i~~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 209 E--PILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred C--cEecHHHcCCCceEEeeCCCC
Confidence 3 222 23457788888776664
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.1 Score=45.20 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=40.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+.+.+.|..- .+++.+. ++..... .. ...+. +.++ +.++|+|.+++|-+.
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~---G~~V~~~-Dp~~~~~---~~--~~~~~--~l~ell~~aDiV~lh~Plt~ 179 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGL---GWKVLVC-DPPRQEA---EG--DGDFV--SLERILEECDVISLHTPLTK 179 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHC---CCEEEEE-CCccccc---cc--Ccccc--CHHHHHhhCCEEEEeCcCCC
Confidence 478999998 99999999999864 4566544 3211110 00 11111 2233 478999999999754
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.85 E-value=0.62 Score=44.90 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDR 62 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~ 62 (376)
|||.|.|++|++|+.|++.|.++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~ 23 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL 23 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhcc
Confidence 58999999999999999999876
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=87.80 E-value=0.98 Score=44.98 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=24.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..+|+|+|. |.+|+.+.+.|..- .+++.+.
T Consensus 159 gktvGIiG~-G~IG~~vA~~l~af---G~~V~~~ 188 (347)
T PLN02928 159 GKTVFILGY-GAIGIELAKRLRPF---GVKLLAT 188 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhC---CCEEEEE
Confidence 479999998 99999999999764 4566654
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=87.70 E-value=2.1 Score=39.23 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
..||+|+|+ |-+|.+++..|...++
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI 45 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC
Confidence 478999999 9999999999988643
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=87.65 E-value=2 Score=43.17 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=55.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CC-----------CCceeee--------cCcceEEeec-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS-----------AGKQLSF--------QDKAYTVEEL- 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~-----------~g~~~~~--------~~~~~~v~~~- 94 (376)
..||.|+|+ |-+|.+++..|...+. -++..+-.. +. .|+.-.. ....+.+...
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv--g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV--GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 579999999 8899999999988733 345444221 11 1221110 0112222221
Q ss_pred ---Ccc----CCCCCcEEEEcCCCchhhhhHHH-HHhCCCeEEEcC
Q 017153 95 ---TED----SFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNS 132 (376)
Q Consensus 95 ---~~~----~~~~~DvVf~a~~~~~s~~~~~~-~~~~G~~VIDlS 132 (376)
+.+ .+.++|+|+.|+....++.+..+ ..+.++.+|..+
T Consensus 212 ~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 212 ERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred ccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 13689999999999877765554 467888888754
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.2 Score=41.33 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=55.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CC-----------CCceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS-----------AGKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~-----------~g~~~~~--------~~~~~~v~--- 92 (376)
.-||.|+|+ |-+|.+++..|...+ .-++..+-.+ +. .|+.-.. -...+.++
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aG--VG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLG--IGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhC--CCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 888999999998763 3344443211 11 2221110 01122332
Q ss_pred -ecCccC----CCCCcEEEEcCCCc--hhhhhHH-HHHhCCCeEEEcCCCCCCC
Q 017153 93 -ELTEDS----FDGVDIALFSAGGS--ISKKFGP-IAVEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 93 -~~~~~~----~~~~DvVf~a~~~~--~s~~~~~-~~~~~G~~VIDlS~~~R~~ 138 (376)
.++++. +.++|+|++|++.. .++.+.. .....|+.+|..+ .+.+.
T Consensus 104 ~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~-~~g~~ 156 (287)
T PRK08223 104 EGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAA-PLGMG 156 (287)
T ss_pred cccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEe-ccCCe
Confidence 222322 46899999999874 4444444 4467899998754 44443
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.53 E-value=1.1 Score=41.72 Aligned_cols=31 Identities=10% Similarity=0.257 Sum_probs=25.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++.|.||||.+|+.+.+.|.+++ .++..+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 32 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEG---WRVGAYD 32 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCC---CeEEEEe
Confidence 579999999999999999998863 4565543
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=1.2 Score=43.02 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=59.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+...-|.. +++ .+....+|+|+.|.|...- +-
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~---~atVt~chs~T----------~nl------~~~~~~ADIvIsAvGkp~~--i~ 215 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNA---GATVSVCHIKT----------KDL------SLYTRQADLIIVAAGCVNL--LR 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEcCCCcCc--cC
Confidence 479999999999999999998864 34544332211 011 1223689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+.++
T Consensus 216 ~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~ 248 (282)
T PRK14166 216 SDMVKEGVIVVDVGINR-LESG--KIVGDVDFEEVS 248 (282)
T ss_pred HHHcCCCCEEEEecccc-cCCC--CeeCCCCHHHHH
Confidence 34567899999988654 2121 245566766665
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=87.49 E-value=2.5 Score=38.61 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=24.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKM 71 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~ 71 (376)
|+|.|.|+||.+|+++.+.|.+++ +...+..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~-~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY-PDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC-CCCEEEE
Confidence 579999999999999999998752 2344443
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.1 Score=46.55 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeec-CccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEEL-TEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~-~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
.++++|+|+ |-+|+.+...|...+ .++... +++. ..+.+.... ....... +...+.++|+|+.|+|.+...
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~G---~~V~i~-~R~~~~~~~la~~~-~~~~~~~~~~~~l~~~DiVInatP~g~~~- 404 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARAG---AELLIF-NRTKAHAEALASRC-QGKAFPLESLPELHRIDIIINCLPPSVTI- 404 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCC---CEEEEE-eCCHHHHHHHHHHh-ccceechhHhcccCCCCEEEEcCCCCCcc-
Confidence 468999997 999999999998763 355543 3321 111111100 0011111 122356899999999987642
Q ss_pred hHHHHHhCCCeEEEcCCC
Q 017153 117 FGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~ 134 (376)
...+ . ..|+|+.-.
T Consensus 405 -~~~l-~--~~v~D~~Y~ 418 (477)
T PRK09310 405 -PKAF-P--PCVVDINTL 418 (477)
T ss_pred -hhHH-h--hhEEeccCC
Confidence 1222 2 278887653
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=1.2 Score=43.30 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=60.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+|.+..+|+=|..+|.++. .....+....+.. .++ .+....+|+|+.|.|.. .-.
T Consensus 159 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t----------~~l------~~~~~~ADIvI~Avg~~--~li 220 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT----------KDI------PSYTRQADILIAAIGKA--RFI 220 (295)
T ss_pred CCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc----------hhH------HHHHHhCCEEEEecCcc--Ccc
Confidence 4799999999999999988887520 0122333222210 000 22347899999999765 224
Q ss_pred HHHHHhCCCeEEEcCCCCCCCC--C-CcEEeeccCHHhhcC
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVE--N-VPLVIPEVNPEAMSG 155 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~--~-~~~~lpevN~~~i~~ 155 (376)
-+...+.|+.|||.+-++-.++ . -.-.+-.++.+.++.
T Consensus 221 ~~~~vk~GavVIDVgi~~~~~~~~~~g~kl~GDVd~~~v~~ 261 (295)
T PRK14174 221 TADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDYEGVSA 261 (295)
T ss_pred CHHHcCCCCEEEEeeccccccccccCCCceECCcCHHHHHh
Confidence 4456688999999988762111 0 113556677766653
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=87.38 E-value=2.7 Score=41.98 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=55.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~--- 92 (376)
..||.|+|+ |-+|.+++..|...+.. ++..+- ..+..++.+-+ ....+.++
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVG--HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC--eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 479999999 88999999999876433 444332 11222221110 01223332
Q ss_pred -ecCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 93 -ELTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 93 -~~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
.++++ .+.++|+|++|++...++.+...+ .+.++.+|..+
T Consensus 105 ~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 105 RRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 22222 247899999999998887766654 56788888654
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.30 E-value=1.1 Score=43.16 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=58.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+-|..+|.+. ...+....++. +++ .+....+|+||.|.|.. .-+-
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~---~atVtv~hs~t----------~~L------~~~~~~ADIvI~Avgk~--~lv~ 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNA---DATVTICHSKT----------ENL------KAELRQADILVSAAGKA--GFIT 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhC---CCeeEEEecCh----------hHH------HHHHhhCCEEEECCCcc--cccC
Confidence 489999999999999999888764 33444333321 011 22346899999999743 1123
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-++ .+ + -.+..++.+.++
T Consensus 211 ~~~vk~GavVIDVgi~~-~~-g--kl~GDvdf~~~~ 242 (279)
T PRK14178 211 PDMVKPGATVIDVGINQ-VN-G--KLCGDVDFDAVK 242 (279)
T ss_pred HHHcCCCcEEEEeeccc-cC-C--CCcCCccHHHHH
Confidence 34468899999999875 21 1 133445656655
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.6 Score=43.30 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=55.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC----C-----------CCc--eeee--------cCcceEEe-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR----S-----------AGK--QLSF--------QDKAYTVE- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~----~-----------~g~--~~~~--------~~~~~~v~- 92 (376)
..||.|+|+ |-+|.+++..|...+. -++..+-... . .|+ +-.. -...+.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv--g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV--GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC--CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 478999999 9999999999988633 3555443211 1 111 0000 01122222
Q ss_pred ---ecCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 93 ---ELTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 93 ---~~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
.++++ .+.++|+|++|++...++.+...+ .+.|+.+|..+
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 101 IVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred EeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 22221 246899999999998877766654 56788888654
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.89 E-value=1.4 Score=40.41 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=25.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.+++.|.|++|.+|+.+++.|.+++ .+++.+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G---~~v~~~ 37 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAG---ATVAFN 37 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcC---CEEEEE
Confidence 4789999999999999999998763 366555
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=86.71 E-value=1.6 Score=39.85 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=45.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCC-CCCcEEEEc-CCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSF-DGVDIALFS-AGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a-~~~~~s~ 115 (376)
.++|+|+|. |.+|+.+.+.|.+.+ .+++ +.+.+.. -..+.... .....+. .+.+ .++|+++-| .+.-...
T Consensus 28 gk~v~I~G~-G~vG~~~A~~L~~~G---~~Vv-v~D~~~~~~~~~~~~~-g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~ 100 (200)
T cd01075 28 GKTVAVQGL-GKVGYKLAEHLLEEG---AKLI-VADINEEAVARAAELF-GATVVAP-EEIYSVDADVFAPCALGGVIND 100 (200)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEE-EEcCCHHHHHHHHHHc-CCEEEcc-hhhccccCCEEEecccccccCH
Confidence 479999999 999999999998863 4666 3332211 01110010 1111111 2223 379999954 5555666
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
+.++++ ++++|
T Consensus 101 ~~~~~l---~~~~v 111 (200)
T cd01075 101 DTIPQL---KAKAI 111 (200)
T ss_pred HHHHHc---CCCEE
Confidence 665544 45544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.67 E-value=2.5 Score=39.11 Aligned_cols=90 Identities=16% Similarity=0.274 Sum_probs=55.3
Q ss_pred CceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEE--eecCccCCCC
Q 017153 26 PMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTV--EELTEDSFDG 101 (376)
Q Consensus 26 ~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v--~~~~~~~~~~ 101 (376)
|.|-+++ ..+|.|+|+ |-+|..=+++|.+- ..++.+++ ++. ...+.. ....+.. ...+++++.+
T Consensus 5 Pl~~~l~------~k~VlvvGg-G~va~rKa~~ll~~---ga~v~Vvs-~~~-~~el~~~~~~~~i~~~~~~~~~~~~~~ 72 (210)
T COG1648 5 PLFLDLE------GKKVLVVGG-GSVALRKARLLLKA---GADVTVVS-PEF-EPELKALIEEGKIKWIEREFDAEDLDD 72 (210)
T ss_pred ceEEEcC------CCEEEEECC-CHHHHHHHHHHHhc---CCEEEEEc-CCc-cHHHHHHHHhcCcchhhcccChhhhcC
Confidence 5555554 579999998 99999888888863 45665444 333 221111 0011211 2344555667
Q ss_pred CcEEEEcCCC-chhhhhHHHHHhCCCe
Q 017153 102 VDIALFSAGG-SISKKFGPIAVEKGSI 127 (376)
Q Consensus 102 ~DvVf~a~~~-~~s~~~~~~~~~~G~~ 127 (376)
+++||.|++. ....+....+.+.++.
T Consensus 73 ~~lviaAt~d~~ln~~i~~~a~~~~i~ 99 (210)
T COG1648 73 AFLVIAATDDEELNERIAKAARERRIL 99 (210)
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhCCc
Confidence 9999999988 4455555666666654
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.64 E-value=1.3 Score=43.01 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=58.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....|+. +++ .+....+|+|+.|.|.-- -.-
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~---~ATVtichs~T----------~~L------~~~~~~ADIvV~AvGkp~--~i~ 217 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKE---NCSVTICHSKT----------HNL------SSITSKADIVVAAIGSPL--KLT 217 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCCC--ccC
Confidence 378999999999999999999875 34554332211 011 122367999999988532 233
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+...+.|+.|||.+-.+ ..++ -.+-.++.+.++
T Consensus 218 ~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~ 250 (288)
T PRK14171 218 AEYFNPESIVIDVGINR-ISGN--KIIGDVDFENVK 250 (288)
T ss_pred HHHcCCCCEEEEeeccc-cCCC--CeECCccHHHHH
Confidence 45567899999987543 2111 134456666665
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=86.48 E-value=0.89 Score=44.11 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.|.|+||++|..|++.|.+.+ .+++++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEe
Confidence 589999999999999999998763 3666553
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=86.45 E-value=1.5 Score=43.00 Aligned_cols=105 Identities=10% Similarity=0.135 Sum_probs=60.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEeec-Cc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEEL-TE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+++|+|+ |..++.-++.+..- +| ++-+.+.+++... +.+.. ....+.+... +. +...++|||++||++..
T Consensus 128 ~~~l~iiG~-G~qA~~~~~a~~~v-~~-i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~ 204 (315)
T PRK06823 128 VSAIGIVGT-GIQARMQLMYLKNV-TD-CRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhc-CC-CCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC
Confidence 579999997 99999999987754 24 4444455544221 11110 0012233222 22 33579999999998764
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
- -+-...++.|..|+-.+++.. ..-|+.++-++
T Consensus 205 P-~~~~~~l~~G~hi~~iGs~~p-------~~~Eld~~~l~ 237 (315)
T PRK06823 205 P-LLQAEDIQPGTHITAVGADSP-------GKQELDAELVA 237 (315)
T ss_pred c-eeCHHHcCCCcEEEecCCCCc-------ccccCCHHHHh
Confidence 2 222345678988887766532 12355556555
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=1.5 Score=40.39 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|+||++|..+.+.|.+++ .+++.+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g---~~vi~~~ 37 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREG---ASVVVAD 37 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999998863 3565443
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=1.6 Score=45.45 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=53.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEee--cCccCCCCCcEEEEcCCCchhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEE--LTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~--~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
.||.|+|. |.+|...++.|...+ .++.. .+.+.. . ... ....+.+.. ..++.+.++|+||.+.+-.....
T Consensus 13 ~~v~V~G~-G~sG~aa~~~L~~~G---~~v~~-~D~~~~-~-~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p 85 (488)
T PRK03369 13 APVLVAGA-GVTGRAVLAALTRFG---ARPTV-CDDDPD-A-LRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAP 85 (488)
T ss_pred CeEEEEcC-CHHHHHHHHHHHHCC---CEEEE-EcCCHH-H-HHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCH
Confidence 68999998 999999999888763 35544 332211 1 110 001122221 12334567899999987766667
Q ss_pred hHHHHHhCCCeEE
Q 017153 117 FGPIAVEKGSIVV 129 (376)
Q Consensus 117 ~~~~~~~~G~~VI 129 (376)
...++.++|+.|+
T Consensus 86 ~~~~a~~~gi~v~ 98 (488)
T PRK03369 86 VLAAAAAAGVPIW 98 (488)
T ss_pred HHHHHHHCCCcEe
Confidence 7777888999988
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.33 E-value=0.97 Score=45.92 Aligned_cols=34 Identities=35% Similarity=0.598 Sum_probs=27.9
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+...|.++||||.+|+.+.+.|.+++ +.+.++.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrg---f~vra~V 110 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRG---FSVRALV 110 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCC---Ceeeeec
Confidence 346899999999999999999999985 4555554
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=86.13 E-value=1.4 Score=42.25 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=26.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|+||++|+.+++.|.++++ ++.++.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~---~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY---TVHAAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEE
Confidence 46899999999999999999988643 666554
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.13 E-value=2.7 Score=43.45 Aligned_cols=92 Identities=17% Similarity=0.227 Sum_probs=55.3
Q ss_pred CCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEe--ecCccCCC
Q 017153 25 KPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVE--ELTEDSFD 100 (376)
Q Consensus 25 ~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~--~~~~~~~~ 100 (376)
-|+|-.++ ..||.|+|+ |-++..=++.|++. ..++.+++ +.... .+.. ....+.+. +..+.+++
T Consensus 4 ~P~~~~l~------~~~vlvvGg-G~vA~rk~~~ll~~---ga~v~vis-p~~~~-~~~~l~~~~~i~~~~~~~~~~dl~ 71 (457)
T PRK10637 4 LPIFCQLR------DRDCLLVGG-GDVAERKARLLLDA---GARLTVNA-LAFIP-QFTAWADAGMLTLVEGPFDESLLD 71 (457)
T ss_pred eceEEEcC------CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEc-CCCCH-HHHHHHhCCCEEEEeCCCChHHhC
Confidence 46665554 489999999 99988877777664 34555443 33211 1110 01123332 34455678
Q ss_pred CCcEEEEcCCC-chhhhhHHHHHhCCCeE
Q 017153 101 GVDIALFSAGG-SISKKFGPIAVEKGSIV 128 (376)
Q Consensus 101 ~~DvVf~a~~~-~~s~~~~~~~~~~G~~V 128 (376)
++++||.|++. ....+....+.+.|+.|
T Consensus 72 ~~~lv~~at~d~~~n~~i~~~a~~~~~lv 100 (457)
T PRK10637 72 TCWLAIAATDDDAVNQRVSEAAEARRIFC 100 (457)
T ss_pred CCEEEEECCCCHHHhHHHHHHHHHcCcEE
Confidence 99999999977 44555555555667553
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=86.11 E-value=0.94 Score=48.83 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+||.|.||||++|+.|++.|.+++ +..++.++.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEe
Confidence 4799999999999999999888752 245776554
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=86.09 E-value=1.8 Score=33.05 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.6
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
||.|+|+ |++|.|+...|.+. ..++..+..
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~---g~~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAEL---GKEVTLIER 30 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHT---TSEEEEEES
T ss_pred CEEEECc-CHHHHHHHHHHHHh---CcEEEEEec
Confidence 6899999 99999999999875 457766654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=1 Score=43.18 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=23.9
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
|.|.||||++|+.|++.|.+++ .+++++..+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g---~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG---ITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC---CceEEEecC
Confidence 6899999999999999998863 344444443
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=1.3 Score=43.39 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=22.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
+||.|.|+||++|+.|++.|.+++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 589999999999999999998863
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=85.67 E-value=0.98 Score=44.19 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
|||.|.|+||++|+.|++.|.+++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g 24 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNT 24 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhC
Confidence 589999999999999999998863
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=1.7 Score=42.31 Aligned_cols=94 Identities=9% Similarity=0.086 Sum_probs=55.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cC-cceEEeec-Cc-cCCCCCcEEEEcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QD-KAYTVEEL-TE-DSFDGVDIALFSAGG 111 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~-~~~~v~~~-~~-~~~~~~DvVf~a~~~ 111 (376)
...+++|+|+ |.-|+.-++.+..- +| ++-+.+.+++..- ..+.. .. ..+.+... ++ +...++|||++||++
T Consensus 116 da~~l~iiGa-G~QA~~~~~a~~~v-~~-i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s 192 (301)
T PRK06407 116 NVENFTIIGS-GFQAETQLEGMASV-YN-PKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS 192 (301)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhc-CC-CCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC
Confidence 3589999997 99999999888764 24 4444555543211 11110 00 02223222 22 335799999999997
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
..- -+-...++.|..|+-..++.
T Consensus 193 ~~P-~~~~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 193 DTP-IFNRKYLGDEYHVNLAGSNY 215 (301)
T ss_pred CCc-EecHHHcCCCceEEecCCCC
Confidence 642 22234556788887666653
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.52 E-value=7.8 Score=37.64 Aligned_cols=97 Identities=16% Similarity=0.295 Sum_probs=60.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC--CeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP--YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p--~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
..+|.|+|.+..+|+=|..+|.++ ++ +..+....|.. +++ .+....+|+|+.|.|.-. -
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~-~~~~~AtVtvchs~T----------~~l------~~~~~~ADIvV~AvG~p~--~ 213 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQK-HPDTNATVTLLHSQS----------ENL------TEILKTADIIIAAIGVPL--F 213 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhC-cCCCCCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCcC--c
Confidence 489999999999999999988764 13 33443222211 011 122468999999987642 2
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCC-C-CcEEeeccCHHhhc
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVE-N-VPLVIPEVNPEAMS 154 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~-~-~~~~lpevN~~~i~ 154 (376)
.-+...+.|+.|||..-.+-.++ . ..-.+-.++.+...
T Consensus 214 i~~~~ik~GavVIDvGin~~~~~~~~g~kl~GDVd~e~~~ 253 (287)
T PRK14181 214 IKEEMIAEKAVIVDVGTSRVPAANPKGYILVGDVDFNNVV 253 (287)
T ss_pred cCHHHcCCCCEEEEecccccccccCCCCeeEeccchHHHH
Confidence 33455678999999886641111 0 11356667766655
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=11 Score=36.19 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=55.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CCCCceeee-------------------cCcceEEeec-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RSAGKQLSF-------------------QDKAYTVEEL- 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~~g~~~~~-------------------~~~~~~v~~~- 94 (376)
..+|.|+|. |-+|.++++.|...+ .-++..+-.+ +..++.+-. ......+...
T Consensus 30 ~s~VlVvG~-GGVGs~vae~Lar~G--Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 30 DAHICVVGI-GGVGSWAAEALARTG--IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcC--CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 478999999 999999999998863 3344444211 122221100 0112223211
Q ss_pred ---Ccc---C-C-CCCcEEEEcCCCchhhhhH-HHHHhCCCeEEEcCCCC
Q 017153 95 ---TED---S-F-DGVDIALFSAGGSISKKFG-PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 95 ---~~~---~-~-~~~DvVf~a~~~~~s~~~~-~~~~~~G~~VIDlS~~~ 135 (376)
+++ . + .++|+|++|.+...++... ..+.+.++++|...++.
T Consensus 107 ~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 107 DFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred cccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 211 1 2 3699999999985554433 44467899999877664
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.3 Score=43.75 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCc-ceEEeecC--ccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDK-AYTVEELT--EDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~-~~~v~~~~--~~~~~~~DvVf~a~~~~ 112 (376)
.-.++|||+ |..++--++.+... +|.-++. +.+++.. .+.+.. ... ...+...+ .+...++|+|+.||++.
T Consensus 130 a~~laiIGa-G~qA~~ql~a~~~v-~~~~~I~-i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~ 206 (330)
T COG2423 130 ASTLAIIGA-GAQARTQLEALKAV-RDIREIR-VYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPST 206 (330)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhh-CCccEEE-EEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCC
Confidence 468999998 99999988888754 3555554 4444322 111111 000 11122222 23457999999999998
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFR 136 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R 136 (376)
. .-+....++.|..|.-.+++.+
T Consensus 207 ~-Pil~~~~l~~G~hI~aiGad~p 229 (330)
T COG2423 207 E-PVLKAEWLKPGTHINAIGADAP 229 (330)
T ss_pred C-CeecHhhcCCCcEEEecCCCCc
Confidence 7 3444566778999888887764
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=85.39 E-value=1.7 Score=44.32 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|+|+|+ |.+|+.+++.+... ..++.++ ..+. .+..........+... .+.+.++|+||.|++....-...
T Consensus 202 GktVvViG~-G~IG~~va~~ak~~---Ga~ViV~-d~d~-~R~~~A~~~G~~~~~~-~e~v~~aDVVI~atG~~~~i~~~ 274 (413)
T cd00401 202 GKVAVVAGY-GDVGKGCAQSLRGQ---GARVIVT-EVDP-ICALQAAMEGYEVMTM-EEAVKEGDIFVTTTGNKDIITGE 274 (413)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEE-ECCh-hhHHHHHhcCCEEccH-HHHHcCCCEEEECCCCHHHHHHH
Confidence 469999999 99999999988875 2355443 2221 1100000000111111 12346789999999875443322
Q ss_pred -HHHHhCCCeEEEcC
Q 017153 119 -PIAVEKGSIVVDNS 132 (376)
Q Consensus 119 -~~~~~~G~~VIDlS 132 (376)
-...+.|+.++..+
T Consensus 275 ~l~~mk~GgilvnvG 289 (413)
T cd00401 275 HFEQMKDGAIVCNIG 289 (413)
T ss_pred HHhcCCCCcEEEEeC
Confidence 23345678887665
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=3.2 Score=42.89 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc----eeeecCcceEE-eecCccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----QLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~----~~~~~~~~~~v-~~~~~~~~~~~DvVf~a~~~~~ 113 (376)
..||+|+|. |..|...++.|.++ ..++.+.-.+..... .+... ...+ ...+++.+.++|+|+..-+-..
T Consensus 8 ~~~v~v~G~-G~sG~~~~~~l~~~---g~~v~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~d~vV~SpgI~~ 81 (468)
T PRK04690 8 GRRVALWGW-GREGRAAYRALRAH---LPAQALTLFCNAVEAREVGALADA--ALLVETEASAQRLAAFDVVVKSPGISP 81 (468)
T ss_pred CCEEEEEcc-chhhHHHHHHHHHc---CCEEEEEcCCCcccchHHHHHhhc--CEEEeCCCChHHccCCCEEEECCCCCC
Confidence 368999999 99999999999986 345543322211110 11111 1111 1223344678899988766555
Q ss_pred hhhhHHHHHhCCCeEEE
Q 017153 114 SKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 114 s~~~~~~~~~~G~~VID 130 (376)
..+...++.+.|+.|+.
T Consensus 82 ~~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 82 YRPEALAAAARGTPFIG 98 (468)
T ss_pred CCHHHHHHHHcCCcEEE
Confidence 56667777889999984
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=1.1 Score=44.06 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=40.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s 114 (376)
..+|||+|. |.+|+++.+.+. ..| ..++.+. ++......... ...... +.++ +..+|+|.+++|-+..
T Consensus 145 gktvGIiG~-G~IG~~va~~l~-~~f-gm~V~~~-~~~~~~~~~~~--~~~~~~--~l~ell~~sDvv~lh~plt~~ 213 (323)
T PRK15409 145 HKTLGIVGM-GRIGMALAQRAH-FGF-NMPILYN-ARRHHKEAEER--FNARYC--DLDTLLQESDFVCIILPLTDE 213 (323)
T ss_pred CCEEEEEcc-cHHHHHHHHHHH-hcC-CCEEEEE-CCCCchhhHHh--cCcEec--CHHHHHHhCCEEEEeCCCChH
Confidence 489999998 999999999986 223 4566533 33211110000 011121 2233 4789999999986543
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=2.5 Score=41.76 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|||||. |.+|+.+.+.|... .+++.+..++ ......... ....+. +.+ .+..+|+|++++|.......
T Consensus 16 gKtVGIIG~-GsIG~amA~nL~d~---G~~ViV~~r~-~~s~~~A~~-~G~~v~--sl~Eaak~ADVV~llLPd~~t~~V 87 (335)
T PRK13403 16 GKTVAVIGY-GSQGHAQAQNLRDS---GVEVVVGVRP-GKSFEVAKA-DGFEVM--SVSEAVRTAQVVQMLLPDEQQAHV 87 (335)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHC---cCEEEEEECc-chhhHHHHH-cCCEEC--CHHHHHhcCCEEEEeCCChHHHHH
Confidence 378999998 99999999999875 4566554332 111000000 012222 333 35789999999998666555
Q ss_pred HH-HHH---hCCCeEEEcCCCC
Q 017153 118 GP-IAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~-~~~---~~G~~VIDlS~~~ 135 (376)
.. .+. +.|. ++-.|--|
T Consensus 88 ~~~eil~~MK~Ga-iL~f~hgf 108 (335)
T PRK13403 88 YKAEVEENLREGQ-MLLFSHGF 108 (335)
T ss_pred HHHHHHhcCCCCC-EEEECCCc
Confidence 43 222 3455 44466656
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.1 Score=43.60 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhc-CCCCCeEEEEEecCCCCC-ceeeec--CcceEEeecCc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAG-KQLSFQ--DKAYTVEELTE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~-~~~p~~~l~~v~s~~~~g-~~~~~~--~~~~~v~~~~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+++|+|+ |..|+..++.+.. + +. +-+.+.+++... +.+... ...+.+...+. +.+.++|+|+.||++..
T Consensus 125 ~~~v~IiGa-G~qa~~~~~al~~~~--~~-~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 125 PGDLLLIGT-GVQARAHLEAFAAGL--PV-RRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhC--CC-CEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence 579999998 9999999998864 3 43 334455543211 111110 01122221122 23579999999999864
Q ss_pred hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.+.....+.|..|+-.+++.
T Consensus 201 --Pl~~~~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 201 --PVYPEAARAGRLVVAVGAFT 220 (304)
T ss_pred --ceeCccCCCCCEEEecCCCC
Confidence 22222346788777666653
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.27 E-value=2.2 Score=41.47 Aligned_cols=98 Identities=15% Similarity=0.249 Sum_probs=60.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+|.+..+|+=|..+|.+++.. +..+....|+. +++ .+....+|+|+.|.|.--- +
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------~nl------~~~~~~ADIvIsAvGkp~~--i 218 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS----------KNL------KKECLEADIIIAALGQPEF--V 218 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC----------CCH------HHHHhhCCEEEEccCCcCc--c
Confidence 479999999999999999999875210 23444332211 011 1223689999999876432 2
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCC----CcEEeeccCHHhhcC
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMSG 155 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~----~~~~lpevN~~~i~~ 155 (376)
-....+.|+.|||.+-.+ ..+. -.-.+-.++.+.++.
T Consensus 219 ~~~~vk~gavVIDvGin~-~~~~~~~~g~klvGDVdf~~v~~ 259 (293)
T PRK14185 219 KADMVKEGAVVIDVGTTR-VPDATRKSGFKLTGDVKFDEVAP 259 (293)
T ss_pred CHHHcCCCCEEEEecCcc-cccccccCCCeeEcCCCHHHHHh
Confidence 234567899999988754 2220 113556677776653
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.24 E-value=2.3 Score=41.30 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+=|..+|.++ +..+....+.. +++ .+....+|+||.|.|.-.- .-
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~---~atVtv~hs~T----------~~l------~~~~~~ADIvv~AvG~p~~--i~ 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNR---NATVSVCHVFT----------DDL------KKYTLDADILVVATGVKHL--IK 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC---CCEEEEEeccC----------CCH------HHHHhhCCEEEEccCCccc--cC
Confidence 489999999999999999999875 34554333211 011 1224689999998765321 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
....+.|+.|||.+..+ . ++ -.+-.++.+.++
T Consensus 223 ~~~vk~gavVIDvGin~-~-~g--kl~GDvd~~~~~ 254 (287)
T PRK14176 223 ADMVKEGAVIFDVGITK-E-ED--KVYGDVDFENVI 254 (287)
T ss_pred HHHcCCCcEEEEecccc-c-CC--CccCCcCHHHHH
Confidence 33567899999998764 1 11 123445655554
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=85.15 E-value=1 Score=52.74 Aligned_cols=88 Identities=16% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISK- 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~- 115 (376)
..+||++|. |.+|..+.+.|...+| ++.+. +++. .-..+...+ .... .++.+ ..++|+||+|++.....
T Consensus 324 ~~~IGfIGl-G~MG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~G--a~~~-~s~~e~~~~aDvVi~~V~~~~~v~ 395 (1378)
T PLN02858 324 VKRIGFIGL-GAMGFGMASHLLKSNF---SVCGY-DVYKPTLVRFENAG--GLAG-NSPAEVAKDVDVLVIMVANEVQAE 395 (1378)
T ss_pred CCeEEEECc-hHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHcC--Ceec-CCHHHHHhcCCEEEEecCChHHHH
Confidence 478999997 9999999999987644 55443 2221 111111111 1111 12333 36899999999965432
Q ss_pred hhH---H---HHHhCCCeEEEcCCC
Q 017153 116 KFG---P---IAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~---~---~~~~~G~~VIDlS~~ 134 (376)
+.. . .....|..|||+|.-
T Consensus 396 ~Vl~g~~g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 396 NVLFGDLGAVSALPAGASIVLSSTV 420 (1378)
T ss_pred HHHhchhhHHhcCCCCCEEEECCCC
Confidence 222 1 112467889999874
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=1.4 Score=45.17 Aligned_cols=89 Identities=19% Similarity=0.173 Sum_probs=48.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK-F 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~-~ 117 (376)
..+|+|+|+ |.+|+.+++.|... ..++.+. +.+. .+..........+..+ .+.+.++|+||.|++....-. .
T Consensus 212 Gk~VlViG~-G~IG~~vA~~lr~~---Ga~ViV~-d~dp-~ra~~A~~~G~~v~~l-~eal~~aDVVI~aTG~~~vI~~~ 284 (425)
T PRK05476 212 GKVVVVAGY-GDVGKGCAQRLRGL---GARVIVT-EVDP-ICALQAAMDGFRVMTM-EEAAELGDIFVTATGNKDVITAE 284 (425)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCEEEEE-cCCc-hhhHHHHhcCCEecCH-HHHHhCCCEEEECCCCHHHHHHH
Confidence 478999999 99999999999875 3355433 2221 1111100001112111 123468999999997643221 1
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
.-...+.|+.++.. +.|
T Consensus 285 ~~~~mK~GailiNv-G~~ 301 (425)
T PRK05476 285 HMEAMKDGAILANI-GHF 301 (425)
T ss_pred HHhcCCCCCEEEEc-CCC
Confidence 11223567777744 444
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.07 E-value=1.6 Score=40.04 Aligned_cols=31 Identities=10% Similarity=0.242 Sum_probs=25.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++.|.|+||.+|.++++.|.+++ .++..+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~ 36 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG---ARVVVTD 36 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 689999999999999999998863 3555443
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=85.07 E-value=1.7 Score=39.54 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|+||++|+++++.|.+++ .+++.+.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G---~~v~~~~ 36 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQG---ANVVINY 36 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4689999999999999999998763 3554444
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=85.05 E-value=2 Score=43.82 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF- 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~- 117 (376)
..+|+|+|+ |.+|+.+++.+... ..++.++. .+. .+..........+... .+.+.++|+||+|++....-..
T Consensus 195 Gk~VvViG~-G~IG~~vA~~ak~~---Ga~ViV~d-~dp-~r~~~A~~~G~~v~~l-eeal~~aDVVItaTG~~~vI~~~ 267 (406)
T TIGR00936 195 GKTVVVAGY-GWCGKGIAMRARGM---GARVIVTE-VDP-IRALEAAMDGFRVMTM-EEAAKIGDIFITATGNKDVIRGE 267 (406)
T ss_pred cCEEEEECC-CHHHHHHHHHHhhC---cCEEEEEe-CCh-hhHHHHHhcCCEeCCH-HHHHhcCCEEEECCCCHHHHHHH
Confidence 479999999 99999999998865 34655432 211 1111000001122222 2235688999999986443221
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
.-...+.|+.++. .+.|
T Consensus 268 ~~~~mK~GailiN-~G~~ 284 (406)
T TIGR00936 268 HFENMKDGAIVAN-IGHF 284 (406)
T ss_pred HHhcCCCCcEEEE-ECCC
Confidence 1122356777764 4443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=84.86 E-value=0.99 Score=40.07 Aligned_cols=88 Identities=19% Similarity=0.287 Sum_probs=46.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch--hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI--SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~--s~~ 116 (376)
..++.|+|+ |.+|+-+.+.|... ...+... ..+. =+.+........+..+ .+.+..+|++|.||+... ..+
T Consensus 23 Gk~vvV~GY-G~vG~g~A~~lr~~---Ga~V~V~-e~DP-i~alqA~~dGf~v~~~-~~a~~~adi~vtaTG~~~vi~~e 95 (162)
T PF00670_consen 23 GKRVVVIGY-GKVGKGIARALRGL---GARVTVT-EIDP-IRALQAAMDGFEVMTL-EEALRDADIFVTATGNKDVITGE 95 (162)
T ss_dssp TSEEEEE---SHHHHHHHHHHHHT---T-EEEEE--SSH-HHHHHHHHTT-EEE-H-HHHTTT-SEEEE-SSSSSSB-HH
T ss_pred CCEEEEeCC-CcccHHHHHHHhhC---CCEEEEE-ECCh-HHHHHhhhcCcEecCH-HHHHhhCCEEEECCCCccccCHH
Confidence 378999999 99999999999875 3444322 2111 0111110111333332 234578999999998753 455
Q ss_pred hHHHHHhCCCeEEEcCCCC
Q 017153 117 FGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~ 135 (376)
..+++ +.|+.+.+.. .|
T Consensus 96 ~~~~m-kdgail~n~G-h~ 112 (162)
T PF00670_consen 96 HFRQM-KDGAILANAG-HF 112 (162)
T ss_dssp HHHHS--TTEEEEESS-SS
T ss_pred HHHHh-cCCeEEeccC-cC
Confidence 55553 5678887654 44
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=84.85 E-value=3.4 Score=41.81 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=54.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.+++..|...+. -++..+- ..+..++.+-+ ....+.+..
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv--g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI--GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC--CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 479999999 8889999999987633 3444332 11222222111 011223321
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEE
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVD 130 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VID 130 (376)
++++ .+.++|+|++|++...++.+...+ .+.++..|.
T Consensus 115 ~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~ 158 (390)
T PRK07411 115 TRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVY 158 (390)
T ss_pred cccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2221 247899999999998887777655 467777774
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=84.76 E-value=2.1 Score=40.66 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=40.5
Q ss_pred EEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCC--Cce--eee---cCcceEEeec-C-ccCCCCCcEEEEcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSA--GKQ--LSF---QDKAYTVEEL-T-EDSFDGVDIALFSAGG 111 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~--g~~--~~~---~~~~~~v~~~-~-~~~~~~~DvVf~a~~~ 111 (376)
|+|+||.|.+|..++..|...+ +...++..+-..... +.. +.. ......+... | .+++.++|+|+++.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 6899999999999999887652 122566655322211 110 000 0012334322 2 3557899999998754
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.73 E-value=2.3 Score=41.52 Aligned_cols=97 Identities=18% Similarity=0.202 Sum_probs=58.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..+|.|+|.+..+|+=|..+|.+++. -+..+...-|+. +++ .+....+|+|+.|.|.-- -+
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T----------~~l------~~~~~~ADIvIsAvGkp~--~i 218 (297)
T PRK14167 157 GADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT----------DDL------AAKTRRADIVVAAAGVPE--LI 218 (297)
T ss_pred CCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC----------CCH------HHHHhhCCEEEEccCCcC--cc
Confidence 48999999999999999999986410 023443222211 011 122368999999986532 22
Q ss_pred HHHHHhCCCeEEEcCCCCCCCCC---CcEEeeccCHHhhc
Q 017153 118 GPIAVEKGSIVVDNSSAFRMVEN---VPLVIPEVNPEAMS 154 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~R~~~~---~~~~lpevN~~~i~ 154 (376)
-+...+.|+.|||..-.+ .++. ..-.+-.++.+.++
T Consensus 219 ~~~~ik~gaiVIDvGin~-~~~~~~~g~kl~GDVd~e~v~ 257 (297)
T PRK14167 219 DGSMLSEGATVIDVGINR-VDADTEKGYELVGDVEFESAK 257 (297)
T ss_pred CHHHcCCCCEEEEccccc-cCcccccCCceeecCcHHHHH
Confidence 234567899999987554 2110 01245566666665
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.62 E-value=5 Score=40.98 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=51.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc---eeeecCcceEEe--ecCccCCCCCcEEEEcCCCchh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK---QLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~---~~~~~~~~~~v~--~~~~~~~~~~DvVf~a~~~~~s 114 (376)
.||.|+|. |-+|...++.|..++ ...++... +.+..-. .+. ..+.+. ..+++.+.++|+|+...+-...
T Consensus 8 ~~v~viG~-G~sG~s~~~~l~~~~-~~~~v~~~-D~~~~~~~~~~l~---~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~ 81 (438)
T PRK04663 8 KNVVVVGL-GITGLSVVKHLRKYQ-PQLTVKVI-DTRETPPGQEQLP---EDVELHSGGWNLEWLLEADLVVTNPGIALA 81 (438)
T ss_pred ceEEEEec-cHHHHHHHHHHHhcC-CCCeEEEE-eCCCCchhHHHhh---cCCEEEeCCCChHHhccCCEEEECCCCCCC
Confidence 68999999 999999999888751 12555432 2221110 111 123332 2344456788988887655545
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.....++.++|++|+
T Consensus 82 ~p~~~~a~~~gi~i~ 96 (438)
T PRK04663 82 TPEIQQVLAAGIPVV 96 (438)
T ss_pred CHHHHHHHHCCCcEE
Confidence 556667778899988
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.53 E-value=1.8 Score=41.77 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+.++|.|.|++|++|+.|++.|.++++ ++.++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~---~V~~~ 35 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGY---TINAT 35 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCC---EEEEE
Confidence 347999999999999999999988643 55443
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.52 E-value=2 Score=41.53 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=25.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..||+|+||.|-+|+-|--+|... |.+.-.++.
T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~n--p~Vs~LaLY 60 (345)
T KOG1494|consen 28 GLKVAVLGAAGGIGQPLSLLLKLN--PLVSELALY 60 (345)
T ss_pred cceEEEEecCCccCccHHHHHhcC--cccceeeee
Confidence 589999999999999987777655 665544443
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.52 E-value=6.3 Score=42.87 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCC-----------Cceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSA-----------GKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~-----------g~~~~~--------~~~~~~v~--- 92 (376)
..||+|+|+ |-+|..++..|...+. -++..+- ..++. |+.-.. -...+.++
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GV--G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGI--GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCC--CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 479999998 8899999999987633 3444331 11112 221100 01122222
Q ss_pred -ecCccC----CCCCcEEEEcCCCch--hh-hhHHHHHhCCCeEEEcC
Q 017153 93 -ELTEDS----FDGVDIALFSAGGSI--SK-KFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 93 -~~~~~~----~~~~DvVf~a~~~~~--s~-~~~~~~~~~G~~VIDlS 132 (376)
.++++. +.++|+|++|++... ++ .+.....+.|+.+|+.+
T Consensus 120 ~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 120 AGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred cCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 222222 478999999998642 33 23345567888888754
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=84.45 E-value=7.4 Score=36.52 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=55.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCC-----------CCceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRS-----------AGKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~-----------~g~~~~~--------~~~~~~v~~-- 93 (376)
..||.|+|. |-+|.++++.|...+ .-++..+-. .+. .|+.-.. -...+.+..
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~G--Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSG--VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcC--CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 478999999 999999999998873 335554421 111 1221100 011223322
Q ss_pred --cCcc---C-C-CCCcEEEEcCCCchhhhhHH-HHHhCCCeEEEcCCCC
Q 017153 94 --LTED---S-F-DGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 94 --~~~~---~-~-~~~DvVf~a~~~~~s~~~~~-~~~~~G~~VIDlS~~~ 135 (376)
++++ . + .+.|+|++|.+...++.... .+.+.++++|...+..
T Consensus 88 ~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 88 EFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred eecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1211 1 2 36899999998876655444 4457789988765543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=84.39 E-value=1.8 Score=42.50 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=25.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.|+||++|..+++.|.+++ .++.++.
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G---~~V~~~~ 35 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELG---AEVYGYS 35 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCC---CEEEEEe
Confidence 789999999999999999998864 3565543
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.36 E-value=1.8 Score=39.53 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.||||.+|+.+++.|.++ ..++.++.
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~---g~~V~~~~ 37 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE---GYKVAITA 37 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC---CCEEEEee
Confidence 478999999999999999999876 34665553
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.28 E-value=1.9 Score=39.10 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=25.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|+||.+|+.+++.|.+++ .++..+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G---~~v~~~~ 38 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARG---ARVALIG 38 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCC---CeEEEEe
Confidence 4689999999999999999998863 3555443
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.25 E-value=1.8 Score=42.85 Aligned_cols=83 Identities=16% Similarity=0.303 Sum_probs=45.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecC-ccCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~ 116 (376)
..+|+|+|+ |.+|+.+++.|.. |......+.+... ..... ..-....+ ++.+.++|+++.|+|-+....
T Consensus 162 gK~vgilG~-G~IG~~ia~rL~~-----Fg~~i~y~~r~~~~~~~~~---~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~ 232 (336)
T KOG0069|consen 162 GKTVGILGL-GRIGKAIAKRLKP-----FGCVILYHSRTQLPPEEAY---EYYAEFVDIEELLANSDVIVVNCPLTKETR 232 (336)
T ss_pred CCEEEEecC-cHHHHHHHHhhhh-----ccceeeeecccCCchhhHH---HhcccccCHHHHHhhCCEEEEecCCCHHHH
Confidence 489999999 9999999999964 2222223322211 11100 00001122 233578999999988765422
Q ss_pred -hHH-HH---HhCCCeEEE
Q 017153 117 -FGP-IA---VEKGSIVVD 130 (376)
Q Consensus 117 -~~~-~~---~~~G~~VID 130 (376)
... ++ .+.|+.+|-
T Consensus 233 ~liNk~~~~~mk~g~vlVN 251 (336)
T KOG0069|consen 233 HLINKKFIEKMKDGAVLVN 251 (336)
T ss_pred HHhhHHHHHhcCCCeEEEe
Confidence 222 11 245666663
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.7 Score=42.69 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=39.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+++.++|..- ..++.+.. +. ++.. . ....+.+ .+..+|+|++++|-+.
T Consensus 148 gktvgIiG~-G~IG~~vA~~l~~f---gm~V~~~~-~~--~~~~-----~--~~~~~l~ell~~sDiv~l~lPlt~ 209 (317)
T PRK06487 148 GKTLGLLGH-GELGGAVARLAEAF---GMRVLIGQ-LP--GRPA-----R--PDRLPLDELLPQVDALTLHCPLTE 209 (317)
T ss_pred CCEEEEECC-CHHHHHHHHHHhhC---CCEEEEEC-CC--CCcc-----c--ccccCHHHHHHhCCEEEECCCCCh
Confidence 479999998 99999999999753 45665443 22 1110 0 1111223 3578999999999754
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=84.15 E-value=1 Score=52.67 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=53.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~~ 116 (376)
..|||+||- |..|..+.+.|..++| ++.+. .++. .-..+...+ ..+.+ ++.++ .++|+||.|++.....+
T Consensus 4 ~~~IGfIGL-G~MG~~mA~~L~~~G~---~v~v~-dr~~~~~~~l~~~G--a~~~~-s~~e~a~~advVi~~l~~~~~v~ 75 (1378)
T PLN02858 4 AGVVGFVGL-DSLSFELASSLLRSGF---KVQAF-EISTPLMEKFCELG--GHRCD-SPAEAAKDAAALVVVLSHPDQVD 75 (1378)
T ss_pred CCeEEEEch-hHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHHcC--CeecC-CHHHHHhcCCEEEEEcCChHHHH
Confidence 368999997 9999999999988644 55543 3321 111111111 11221 23333 67999999999876544
Q ss_pred hH----HHHH---hCCCeEEEcCCCC
Q 017153 117 FG----PIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~----~~~~---~~G~~VIDlS~~~ 135 (376)
.+ ..++ ..|..|||.|.-.
T Consensus 76 ~V~~g~~g~~~~l~~g~iivd~STi~ 101 (1378)
T PLN02858 76 DVFFGDEGAAKGLQKGAVILIRSTIL 101 (1378)
T ss_pred HHHhchhhHHhcCCCcCEEEECCCCC
Confidence 33 1122 3577899998653
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.01 E-value=1.9 Score=39.95 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=30.2
Q ss_pred ceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 27 ~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
||+.-.|++ +..+|.|.|++|.+|+.+.+.|.+++ .+++.+
T Consensus 1 ~~~~~~~~l--~~k~vlVtG~s~gIG~~la~~l~~~G---~~vv~~ 41 (255)
T PRK06113 1 MFNSDNLRL--DGKCAIITGAGAGIGKEIAITFATAG---ASVVVS 41 (255)
T ss_pred CCCccccCc--CCCEEEEECCCchHHHHHHHHHHHCC---CeEEEE
Confidence 555544443 34899999999999999999999873 355544
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=2.9 Score=43.88 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..||.|+|+ |-+|...++.+... . .++.++
T Consensus 165 g~kVlViGa-G~iGL~Ai~~Ak~l--G-A~V~a~ 194 (509)
T PRK09424 165 PAKVLVIGA-GVAGLAAIGAAGSL--G-AIVRAF 194 (509)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC--C-CEEEEE
Confidence 479999999 99999999988776 3 255444
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=1.9 Score=44.66 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=48.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch--hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI--SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~--s~~ 116 (376)
..+|+|+|+ |.+|+.+++.|... ..++.+...... +..........+..+ .+.+..+|+|+.|++..- ..+
T Consensus 254 GKtVgVIG~-G~IGr~vA~rL~a~---Ga~ViV~e~dp~--~a~~A~~~G~~~~~l-eell~~ADIVI~atGt~~iI~~e 326 (476)
T PTZ00075 254 GKTVVVCGY-GDVGKGCAQALRGF---GARVVVTEIDPI--CALQAAMEGYQVVTL-EDVVETADIFVTATGNKDIITLE 326 (476)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEeCCch--hHHHHHhcCceeccH-HHHHhcCCEEEECCCcccccCHH
Confidence 479999999 99999999999875 335544322111 110000001111111 123578999999987522 222
Q ss_pred hHHHHHhCCCeEEEcC
Q 017153 117 FGPIAVEKGSIVVDNS 132 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS 132 (376)
... ..+.|+.+|+.+
T Consensus 327 ~~~-~MKpGAiLINvG 341 (476)
T PTZ00075 327 HMR-RMKNNAIVGNIG 341 (476)
T ss_pred HHh-ccCCCcEEEEcC
Confidence 222 235688888654
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=84.00 E-value=1.5 Score=42.79 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.||||++|+.|++.|.+.+ .+++++.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~ 31 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG---YEVHGLI 31 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 479999999999999999998863 3666554
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=83.97 E-value=1 Score=48.49 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
++|||.|.|+||++|+.|.+.|.+++
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g 404 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG 404 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC
Confidence 46899999999999999999998763
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=83.94 E-value=1.5 Score=42.78 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=26.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|+||++|+.|++.|.++ ..++.++.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~---G~~V~~~~ 37 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSK---GYEVHGII 37 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEEe
Confidence 478999999999999999999886 34666554
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=83.89 E-value=2.4 Score=36.16 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=45.3
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCceeeecCcceEEe---ecCc--cCCCCCcEEEEcCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSFQDKAYTVE---ELTE--DSFDGVDIALFSAG 110 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~~~~~~~~~~v~---~~~~--~~~~~~DvVf~a~~ 110 (376)
|+|+|+ |-+|.-+.-.|.+. ..++..+..+.. .|-.+.....+..+. .... .....+|+||.|+.
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~---g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQA---GHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHT---TCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHC---CCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789999 99999999999764 346666654331 121222111111111 1111 12367899999999
Q ss_pred CchhhhhHHHHH
Q 017153 111 GSISKKFGPIAV 122 (376)
Q Consensus 111 ~~~s~~~~~~~~ 122 (376)
+....+..+.+.
T Consensus 77 a~~~~~~l~~l~ 88 (151)
T PF02558_consen 77 AYQLEQALQSLK 88 (151)
T ss_dssp GGGHHHHHHHHC
T ss_pred ccchHHHHHHHh
Confidence 988877666643
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.77 E-value=1 Score=44.50 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=40.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-Ccc-CCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TED-SFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~~-~~~~~DvVf~a~~~~~ 113 (376)
.++|||+|+ |.+|+.+.+.|..- .+++.+....... .... ...+... +.+ -+..+|++.+.+|-+-
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~af---gm~v~~~d~~~~~--~~~~---~~~~~~~~~Ld~lL~~sDiv~lh~PlT~ 209 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAF---GMKVIGYDPYSPR--ERAG---VDGVVGVDSLDELLAEADILTLHLPLTP 209 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCeEEEECCCCch--hhhc---cccceecccHHHHHhhCCEEEEcCCCCc
Confidence 479999998 99999999999764 4566654321111 1100 0111211 122 3578999999988754
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=83.74 E-value=4.3 Score=41.06 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=54.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCCCCceeee-------------------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~--- 92 (376)
..||.|+|+ |-+|.+++..|...+.. ++..+- ..+..++.+-+ ....+.+.
T Consensus 42 ~~~VlviG~-GGlGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 42 NARVLVIGA-GGLGSPTLLYLAAAGVG--TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHcCCC--eEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 579999999 88999999999876433 444332 11222221110 01123332
Q ss_pred -ecCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 93 -ELTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 93 -~~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
.++.+ .+.++|+|++|+....++.+..++ .+.|+..|..+
T Consensus 119 ~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 119 FRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred ccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 22221 246899999999998877766654 56777777543
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=83.67 E-value=7.2 Score=42.56 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=80.6
Q ss_pred CCEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecC-CCCCce-------ee----ec----------CcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASK-RSAGKQ-------LS----FQ----------DKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~-~~~g~~-------~~----~~----------~~~~~v~~~~ 95 (376)
..||+|+|+ |..|..+...++ .+ .++++.+-.. +...+. +. .+ ...+... .+
T Consensus 304 i~~v~ViGa-G~mG~~iA~~~a~~~---G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~ 378 (699)
T TIGR02440 304 IKKVGILGG-GLMGGGIASVTATKA---GIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TD 378 (699)
T ss_pred ccEEEEECC-cHHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CC
Confidence 468999999 999999998887 34 3455544211 111110 00 00 0112222 23
Q ss_pred ccCCCCCcEEEEcCCCchhhhh--HH---HHHhCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCC
Q 017153 96 EDSFDGVDIALFSAGGSISKKF--GP---IAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGK 162 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s~~~--~~---~~~~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~ 162 (376)
.+.+.++|+|+.|.+-....+. .. ++...++.+-.+||.+...+ +--.++=-+|+..+.+ -
T Consensus 379 ~~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~------l 452 (699)
T TIGR02440 379 YRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMP------L 452 (699)
T ss_pred hHHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCc------e
Confidence 3457899999999988765332 22 23346788889999886432 1124555556554432 2
Q ss_pred CcEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 163 GALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 163 ~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
..+|..+.+....+..+.. +.+..+-..|.+
T Consensus 453 VEvv~g~~T~~~~~~~~~~-~~~~~gk~pv~v 483 (699)
T TIGR02440 453 VEVIPHAGTSEQTIATTVA-LAKKQGKTPIVV 483 (699)
T ss_pred EEEeCCCCCCHHHHHHHHH-HHHHcCCeEEEE
Confidence 4477777766655555443 444444344444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=2.1 Score=41.86 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=40.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+++.+++.. | ..++.+. ++.. +... ..+...++ .+.+..+|+|.+++|.+.
T Consensus 145 gktvGIiG~-G~IG~~vA~~~~~--f-gm~V~~~-d~~~--~~~~---~~~~~~~l-~ell~~sDvv~lh~Plt~ 208 (311)
T PRK08410 145 GKKWGIIGL-GTIGKRVAKIAQA--F-GAKVVYY-STSG--KNKN---EEYERVSL-EELLKTSDIISIHAPLNE 208 (311)
T ss_pred CCEEEEECC-CHHHHHHHHHHhh--c-CCEEEEE-CCCc--cccc---cCceeecH-HHHhhcCCEEEEeCCCCc
Confidence 489999998 9999999999864 3 4566544 3321 1100 11112121 223578999999998654
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=83.46 E-value=2.3 Score=42.18 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=59.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|-+..+|+=|.-+|.++ +..+...-++. +++ .+....+|||+.|.|.-.- +-
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~---~ATVTicHs~T----------~nl------~~~~~~ADIvIsAvGkp~~--v~ 272 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRH---DATVSTVHAFT----------KDP------EQITRKADIVIAAAGIPNL--VR 272 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHC---CCEEEEEcCCC----------CCH------HHHHhhCCEEEEccCCcCc--cC
Confidence 479999999999999999988875 34554333321 011 1223689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCC----CcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~----~~~~lpevN~~~i~ 154 (376)
....+.|+.|||..-.+ .++. -.-.+-.++.+...
T Consensus 273 ~d~vk~GavVIDVGin~-~~~~~~~~g~klvGDVdfe~v~ 311 (345)
T PLN02897 273 GSWLKPGAVVIDVGTTP-VEDSSCEFGYRLVGDVCYEEAL 311 (345)
T ss_pred HHHcCCCCEEEEccccc-cccccccCCCeeEecccHHHHH
Confidence 34567899999988654 2210 11345556655554
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=83.21 E-value=4.2 Score=46.18 Aligned_cols=109 Identities=15% Similarity=0.283 Sum_probs=66.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC---CCeEEEEEe----cCCCCCceeee-------------------cCcceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF---PYRSIKMLA----SKRSAGKQLSF-------------------QDKAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~---p~~~l~~v~----s~~~~g~~~~~-------------------~~~~~~v~ 92 (376)
..||.|+|+ |-+|.++++.|...+. +.-++..+- ..+..++.+-+ ...++.+.
T Consensus 419 ~~kVlvvGa-GGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~ 497 (1008)
T TIGR01408 419 NLNIFLVGC-GAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKID 497 (1008)
T ss_pred hCcEEEECC-ChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 479999999 9999999999886533 113555442 11222222111 01122222
Q ss_pred ----ecCc--------cCCCCCcEEEEcCCCchhhhhHHH-HHhCCCeEEEcCCCCCCCCCCcEEeeccC
Q 017153 93 ----ELTE--------DSFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSSAFRMVENVPLVIPEVN 149 (376)
Q Consensus 93 ----~~~~--------~~~~~~DvVf~a~~~~~s~~~~~~-~~~~G~~VIDlS~~~R~~~~~~~~lpevN 149 (376)
.+++ +-|.+.|+|+.|++...++.+... ....++..|+ ++.+-+...+...+|++.
T Consensus 498 ~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~-~gt~G~~G~v~v~ip~~t 566 (1008)
T TIGR01408 498 AHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLE-SGTLGTKGNTQVVVPHLT 566 (1008)
T ss_pred EEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE-EeccCceeeEEEEeCCCc
Confidence 1211 124689999999999888777764 4578889998 455555555556677753
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.10 E-value=3.6 Score=42.96 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=22.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+.||+|||+ |-.|....+.|+.+ ...++..+
T Consensus 39 ~krVAIVGa-GPAGlyaA~~Ll~~--~g~~Vtlf 69 (506)
T PTZ00188 39 PFKVGIIGA-GPSALYCCKHLLKH--ERVKVDIF 69 (506)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHh--cCCeEEEE
Confidence 479999998 99999998865533 23445444
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.06 E-value=2.2 Score=44.70 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=33.8
Q ss_pred CCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCcee
Q 017153 35 YQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL 82 (376)
Q Consensus 35 ~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~ 82 (376)
..+++.+|.|||| |..|...+|.|.+. .+++.++-+++-.|-++
T Consensus 11 ~~~~~~~VIVIGA-GiaGLsAArqL~~~---G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 11 EAGKKKKVIVIGA-GLAGLSAARQLQDF---GFDVLVLEARDRVGGRI 54 (501)
T ss_pred cccCCCcEEEECC-cHHHHHHHHHHHHc---CCceEEEeccCCcCcee
Confidence 3455689999999 99999999999986 45677776666555333
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.02 E-value=4.5 Score=41.76 Aligned_cols=89 Identities=15% Similarity=0.224 Sum_probs=51.5
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-eeeecCcceEE-eecCccCCCCCcEEEEcCC
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTV-EELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-~~~~~~~~~~v-~~~~~~~~~~~DvVf~a~~ 110 (376)
|+.+. ..||+|+|. |..|...++.|.. ..++.+ .+.+.... ..... .+..+ .....+.+.++|+|+..-+
T Consensus 1 ~~~~~-~~~v~v~G~-G~sG~a~~~~L~~----g~~v~v-~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vV~SPg 72 (454)
T PRK01368 1 MNSHT-KQKIGVFGL-GKTGISVYEELQN----KYDVIV-YDDLKANRDIFEEL-YSKNAIAALSDSRWQNLDKIVLSPG 72 (454)
T ss_pred CcCCC-CCEEEEEee-cHHHHHHHHHHhC----CCEEEE-ECCCCCchHHHHhh-hcCceeccCChhHhhCCCEEEECCC
Confidence 34444 368999998 9999999999983 235543 33221110 00000 01111 1212233567898888765
Q ss_pred CchhhhhHHHHHhCCCeEE
Q 017153 111 GSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VI 129 (376)
-.........+.+.|++|+
T Consensus 73 I~~~~p~~~~a~~~gi~v~ 91 (454)
T PRK01368 73 IPLTHEIVKIAKNFNIPIT 91 (454)
T ss_pred CCCCCHHHHHHHHCCCcee
Confidence 5555556667778899986
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=82.82 E-value=2.3 Score=41.09 Aligned_cols=91 Identities=18% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-------CC--CCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-------SF--DGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-------~~--~~~DvVf~a~ 109 (376)
.-+|.|.|++|-+|..+++++... ..++..+.+....-......+.+..+...+.+ .. .++|++|+|+
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~---G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 468999999999999999887765 34655444321110011001111111110100 11 3689999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
+....... -.++..|.++|..+.
T Consensus 216 G~~~~~~~-~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 216 GGEFSNTV-IGQMKKFGRIAICGA 238 (325)
T ss_pred CHHHHHHH-HHHhCcCcEEEEecc
Confidence 87655333 344566777776653
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.75 E-value=2.1 Score=39.68 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=26.1
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
++..++.|.||||.+|+.+++.|.+++ .+++.+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G---~~v~~~ 37 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEG---AIPVIF 37 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcC---CcEEEE
Confidence 334689999999999999999999863 355444
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=82.69 E-value=2.5 Score=43.64 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=45.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-C---CCeEEEEEecCCCCCceeee----------cCcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-F---PYRSIKMLASKRSAGKQLSF----------QDKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~---p~~~l~~v~s~~~~g~~~~~----------~~~~~~v~~~~~~~~~~~Dv 104 (376)
++||+|-||+|.+|-.|+-.|+.-+ | ..+.|+.+--+....+.... ....+.+..-+.+++.++|+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~daDv 202 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHV 202 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCCCE
Confidence 5899999999999999999887621 1 23555555322122111110 01234444434566899999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
||.+.+.
T Consensus 203 vIitag~ 209 (452)
T cd05295 203 IVLLDDF 209 (452)
T ss_pred EEECCCC
Confidence 9998765
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=82.61 E-value=2.2 Score=43.07 Aligned_cols=73 Identities=18% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceee----ecCcce-EEeec-C-ccCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS----FQDKAY-TVEEL-T-EDSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~----~~~~~~-~v~~~-~-~~~~~~~DvVf~a~~ 110 (376)
..+++|+|+ |.-++.-++.+..- +|.++-+.+.+++... ..+. .....+ .+... + .+...++|||++||+
T Consensus 155 a~~l~iiG~-G~QA~~~l~a~~~v-~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~ 232 (379)
T PRK06199 155 SKVVGLLGP-GVMGKTILAAFMAV-CPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS 232 (379)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHh-cCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence 579999997 99999999988762 2656666676654321 1111 010011 13222 2 233578999999997
Q ss_pred Cch
Q 017153 111 GSI 113 (376)
Q Consensus 111 ~~~ 113 (376)
...
T Consensus 233 s~~ 235 (379)
T PRK06199 233 GET 235 (379)
T ss_pred CCC
Confidence 643
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=82.58 E-value=2.6 Score=42.09 Aligned_cols=94 Identities=17% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|-+..+|+=|..+|.++ +..+...-|+. +++ .+....+|||+.|.|.-.- +-
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~---~ATVTicHs~T----------~nl------~~~~r~ADIVIsAvGkp~~--i~ 289 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQRE---DATVSIVHSRT----------KNP------EEITREADIIISAVGQPNM--VR 289 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHC---CCeEEEeCCCC----------CCH------HHHHhhCCEEEEcCCCcCc--CC
Confidence 478999999999999999888875 34544333221 011 1223689999999876432 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCC----CcEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~----~~~~lpevN~~~i~ 154 (376)
....+.|+.|||..=.+ .+++ -.-.+-.++.+...
T Consensus 290 ~d~vK~GAvVIDVGIn~-~~~~~~~~g~klvGDVdfe~v~ 328 (364)
T PLN02616 290 GSWIKPGAVVIDVGINP-VEDASSPRGYRLVGDVCYEEAC 328 (364)
T ss_pred HHHcCCCCEEEeccccc-cccccccCCCeEEecCcHHHHH
Confidence 34567899999987554 2221 11345666766555
|
|
| >PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=82.47 E-value=2.4 Score=42.63 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=51.4
Q ss_pred EECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCCceee----ec-------C-------------cceEEe-ecC--
Q 017153 44 VVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLS----FQ-------D-------------KAYTVE-ELT-- 95 (376)
Q Consensus 44 IvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g~~~~----~~-------~-------------~~~~v~-~~~-- 95 (376)
|+|+||-+|.+.++.+..+ |+ +++++++..+....... +. . .+..+. ..+
T Consensus 1 ILGsTGSIG~qtLdVi~~~--~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l 78 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAH--PEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGL 78 (383)
T ss_pred CCccccHHHHHHHHHHHhC--ccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHH
Confidence 6899999999999999876 54 99998876544332111 00 0 001111 100
Q ss_pred --ccCCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 96 --EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 96 --~~~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
.....++|+|+.|.-....-.-.-.++++|.++-
T Consensus 79 ~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~ia 114 (383)
T PRK12464 79 IAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIA 114 (383)
T ss_pred HHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEE
Confidence 0112468999999877666555556678886643
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=82.47 E-value=2.2 Score=41.28 Aligned_cols=67 Identities=21% Similarity=0.379 Sum_probs=39.4
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cceee--e----cCcceEEee-cCccCCCCCcEEEEcCCC
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLS--F----QDKAYTVEE-LTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~--~----~~~~~~v~~-~~~~~~~~~DvVf~a~~~ 111 (376)
|+|+|| |++|..+...|..+++ . +++++--.... |.... . ......+.. .+.+++.++|+||.|.+.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l-~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKEL-G-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCC-c-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence 689999 9999999998887532 2 77665322111 11110 0 111123332 234457899999998753
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.41 E-value=5 Score=45.14 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe----cCCC-----------CCceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRS-----------AGKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~----s~~~-----------~g~~~~~--------~~~~~~v~--- 92 (376)
..||+|+|. |-+|.+++..|...+. -++..+- ..++ .|+.-.. -...+.++
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGV--G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGI--GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCC--CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 479999999 8889999999987633 3444331 1111 2221110 01122332
Q ss_pred -ecCcc---C-CCCCcEEEEcCCCchh---hhhHHHHHhCCCeEEEcCC
Q 017153 93 -ELTED---S-FDGVDIALFSAGGSIS---KKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 93 -~~~~~---~-~~~~DvVf~a~~~~~s---~~~~~~~~~~G~~VIDlS~ 133 (376)
.++.+ + +.++|+|++|++.... ......+.+.|+.+|..+.
T Consensus 409 ~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 409 EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 22222 2 4799999999987433 3444556788999997554
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=82.37 E-value=0.65 Score=45.49 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=44.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEeec-Cc-cCCCCCcEEEEcCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEEL-TE-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~ 112 (376)
+..+++|+|+ |..++.-++.+... +| ++-+.+.+++... +.+.. ....+.+... +. +...++|||++||++.
T Consensus 127 ~~~~l~viGa-G~QA~~~~~a~~~~-~~-i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~ 203 (313)
T PF02423_consen 127 DARTLGVIGA-GVQARWHLRALAAV-RP-IKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPST 203 (313)
T ss_dssp T--EEEEE---SHHHHHHHHHHHHH-S---SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----S
T ss_pred CCceEEEECC-CHHHHHHHHHHHHh-CC-ceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCC
Confidence 3579999998 99999999987653 36 5555566654321 11110 0012333322 22 3458999999999987
Q ss_pred hhhh-hHHHHHhCCCeEEEcCCC
Q 017153 113 ISKK-FGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~~-~~~~~~~~G~~VIDlS~~ 134 (376)
.... +-...++.|..|+-.+++
T Consensus 204 ~~~P~~~~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 204 TPAPVFDAEWLKPGTHINAIGSY 226 (313)
T ss_dssp SEEESB-GGGS-TT-EEEE-S-S
T ss_pred CCCccccHHHcCCCcEEEEecCC
Confidence 6211 222345678888877765
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.31 E-value=2.6 Score=38.51 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++.|.|++|.+|+.+++.|.+++ .++..+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g---~~V~~~~ 40 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRG---ARVVAAA 40 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCC---CEEEEEe
Confidence 4789999999999999999998873 3655443
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=82.26 E-value=2.8 Score=41.76 Aligned_cols=93 Identities=15% Similarity=0.176 Sum_probs=52.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEeec-Cc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEEL-TE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+++|+|+ |..++.-++.+..- +|.-++. +.+++... +.+.. ....+.+... +. +...++|||++||++..
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~v-r~i~~V~-v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~ 205 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKAL-LGIEEIR-LYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT 205 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHh-CCceEEE-EEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 578999998 99999998876643 2544444 44443221 11110 0011223211 22 33578999999998643
Q ss_pred hhh-hHHHHHhCCCeEEEcCCC
Q 017153 114 SKK-FGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 114 s~~-~~~~~~~~G~~VIDlS~~ 134 (376)
... +-.+.++.|+.|+-..++
T Consensus 206 ~~Pvl~~~~lkpG~hV~aIGs~ 227 (346)
T PRK07589 206 NATILTDDMVEPGMHINAVGGD 227 (346)
T ss_pred CCceecHHHcCCCcEEEecCCC
Confidence 212 223456789987765554
|
|
| >COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=82.21 E-value=2.2 Score=42.59 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=30.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKR 76 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~ 76 (376)
+|+.|+|+||-+|.+-++.+.++ |+ |++++++.-+
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~--p~~f~vval~ag~ 37 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRN--PDKFEVVALAAGK 37 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhC--CCcEEEEEEecCC
Confidence 78999999999999999999987 65 7898886543
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=82.16 E-value=1.8 Score=41.83 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=25.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+|.|.||||++|+.|++.|.++++ ..++.++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~-~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRST-QAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCC-CCEEEEEE
Confidence 478999999999999999987632 24666664
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=81.94 E-value=2.2 Score=42.47 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.++|.|.|+||++|+.|++.|.+++ .++.++.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~~~G---~~V~~~~ 84 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLLRHG---YSVRIAV 84 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC---CEEEEEe
Confidence 35799999999999999999998864 3665543
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.83 E-value=2.3 Score=40.01 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=31.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
+||.+.|.||++|..+.+.+.+.++++-+.+.+.|.
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk 37 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK 37 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc
Confidence 789999999999999999999988877888877654
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.58 E-value=5.1 Score=38.70 Aligned_cols=109 Identities=21% Similarity=0.343 Sum_probs=66.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~~ 116 (376)
..++.|+|.+..+|+=+..+|++. +..+....|.. +++ .+....+|+++.|.|. ....+
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~---naTVtvcHs~T----------~~l------~~~~k~ADIvv~AvG~p~~i~~d 216 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNA---NATVTVCHSRT----------KDL------ASITKNADIVVVAVGKPHFIKAD 216 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhC---CCEEEEEcCCC----------CCH------HHHhhhCCEEEEecCCccccccc
Confidence 479999999999999999988873 44554333211 011 1223688999999864 33334
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC---CchHHHHHH
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP---NCSTIICLM 178 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P---gC~~ta~~l 178 (376)
| .+.|+.|||..-. |.++ -=.+-.++.+..+.. ...+--.| |-.|+++++
T Consensus 217 ~----vk~gavVIDVGin-rv~~--~kl~GDVdf~~v~~~-----a~~iTPVPGGVGPmTvamLl 269 (283)
T COG0190 217 M----VKPGAVVIDVGIN-RVND--GKLVGDVDFDSVKEK-----ASAITPVPGGVGPMTVAMLL 269 (283)
T ss_pred c----ccCCCEEEecCCc-cccC--CceEeeccHHHHHHh-----hcccCCCCCccCHHHHHHHH
Confidence 3 4579999998764 3332 123455676665531 22344566 455555554
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=81.45 E-value=20 Score=39.29 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=57.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCc-----------eeeec----------CcceEEeecCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGK-----------QLSFQ----------DKAYTVEELTE 96 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~-----------~~~~~----------~~~~~v~~~~~ 96 (376)
..||+|+|| |..|..+...++.++ ++++++-... ...+ .+..+ ...+... .+.
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 387 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY 387 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH
Confidence 358999999 999999999998864 4555443211 1100 00000 0112222 233
Q ss_pred cCCCCCcEEEEcCCCchhhhh--HH---HHHhCCCeEEEcCCCCCC
Q 017153 97 DSFDGVDIALFSAGGSISKKF--GP---IAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~--~~---~~~~~G~~VIDlS~~~R~ 137 (376)
+.+.++|+||.|.+-....+. .. ++...++.+-.+||.+..
T Consensus 388 ~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i 433 (715)
T PRK11730 388 AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISI 433 (715)
T ss_pred HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 457899999999987665332 22 334567889999999864
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.40 E-value=6.2 Score=38.54 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCccC----CCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDS----FDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~~~----~~~~DvVf~a~~~~ 112 (376)
.-+|.|+|+ |-+|...++++...+ .-++.++..+...-+.....+.+..+. +.+..+ ..++|+||+|++..
T Consensus 170 g~~VlV~G~-G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~ 246 (343)
T PRK09880 170 GKRVFVSGV-GPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP 246 (343)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH
Confidence 368999997 999999998877652 223443332211000000011111111 101111 12489999999975
Q ss_pred hhhhhHHHHHhCCCeEEEcC
Q 017153 113 ISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS 132 (376)
.+.+.+-+++..|.++|..+
T Consensus 247 ~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 247 SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred HHHHHHHHHhhcCCEEEEEc
Confidence 54444555667777877665
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.39 E-value=2.6 Score=40.85 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
..+||.|.||.||||..|.+.|...+|
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh 52 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGH 52 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCC
Confidence 359999999999999999999887644
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=81.36 E-value=6.5 Score=42.29 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCCC
Q 017153 100 DGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVE 139 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~~ 139 (376)
.++|+||+|++...++-+...+ ...|..+|.. +..++.
T Consensus 447 ~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~a--AlGfdg 485 (664)
T TIGR01381 447 KDHDVVFLLLDSREARWLPTVLCSRHKKIAISA--ALGFDS 485 (664)
T ss_pred hhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEE--Eeccce
Confidence 6899999999999997655544 4567888864 355543
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.35 E-value=3.2 Score=38.96 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=26.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+..++-|.|++|.+|+.+.+.|.++++ ++..+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~~ 38 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIVG 38 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEe
Confidence 347999999999999999999988633 665443
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.24 E-value=6.5 Score=36.02 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=53.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC----CCCceeeecCcceEEeec---CccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR----SAGKQLSFQDKAYTVEEL---TEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~----~~g~~~~~~~~~~~v~~~---~~~~~~~~DvVf~a~~~ 111 (376)
..+|.|+|.+..+|+=|.-+|.++ +..+...-+.. ..+.... ......... -.+....+|||+.|.|.
T Consensus 62 GK~vvVIGrS~iVGkPla~lL~~~---~AtVti~~~~~~~~~~~~~~~~--hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197)
T cd01079 62 GKTITIINRSEVVGRPLAALLAND---GARVYSVDINGIQVFTRGESIR--HEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEEecCcccccccccccc--cccccccchhhHHHHHhhhCCEEEEccCC
Confidence 589999999999999999999875 35555331111 0000000 000000000 01224789999999987
Q ss_pred chhhhhHHHHHhCCCeEEEcCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
..-. .-....+.|+.|||.+..
T Consensus 137 ~~~~-i~~d~ik~GavVIDVGi~ 158 (197)
T cd01079 137 PNYK-VPTELLKDGAICINFASI 158 (197)
T ss_pred CCCc-cCHHHcCCCcEEEEcCCC
Confidence 4321 223456789999998865
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=81.19 E-value=4.3 Score=37.19 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=49.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc--------CCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED--------SFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~--------~~~~~DvVf~a~~ 110 (376)
..+|.|.|+.| +|+.+++++... ..++..+.+....-+.+...+....+...+.. ...++|++|.|.+
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~---g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAA---GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 46899999988 999999888765 24555554321111111000001111110100 1246899999998
Q ss_pred C-chhhhhHHHHHhCCCeEEEcCCC
Q 017153 111 G-SISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 111 ~-~~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
. ...... -..+..+.++++++..
T Consensus 211 ~~~~~~~~-~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 211 GPETLAQA-LRLLRPGGRIVVVGGT 234 (271)
T ss_pred CHHHHHHH-HHhcccCCEEEEEccC
Confidence 7 433333 3344566777776654
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.14 E-value=2.9 Score=41.69 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=74.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC-CCCCeEEEEEecCCCCCceee---e----cCcc-----eEEeec-CccCC----C
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLS---F----QDKA-----YTVEEL-TEDSF----D 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~-~~p~~~l~~v~s~~~~g~~~~---~----~~~~-----~~v~~~-~~~~~----~ 100 (376)
...+-|.||||++|.-+++.+... .++...+. ++.|+ ..|.-. . .+.+ +.+.+. |++.+ .
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sla-vAGRn-~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLA-VAGRN-EKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK 82 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEE-EecCC-HHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh
Confidence 467899999999999999866542 24555554 44432 222110 0 1111 222222 23222 4
Q ss_pred CCcEEEEcCCCch--hhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHH
Q 017153 101 GVDIALFSAGGSI--SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178 (376)
Q Consensus 101 ~~DvVf~a~~~~~--s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l 178 (376)
.+-+++-|.|... ....+....+.|+.-||.|+.-.+ +-..+.+.++... .++.-||++-|--....-+
T Consensus 83 ~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f-----~E~mq~kYhd~A~----ekGVYIVsaCGfDSIPaDl 153 (423)
T KOG2733|consen 83 QARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQF-----MERMQLKYHDLAK----EKGVYIVSACGFDSIPADL 153 (423)
T ss_pred hhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHH-----HHHHHHHHHHHHH----hcCeEEEeecccCCCCccc
Confidence 6788888887743 345666778888988998875211 0112223222221 1134566666655555555
Q ss_pred HHhHHHHhC
Q 017153 179 AATPLHRRA 187 (376)
Q Consensus 179 ~L~pL~~~~ 187 (376)
++.=+-+.|
T Consensus 154 Gv~f~~k~f 162 (423)
T KOG2733|consen 154 GVMFLRKNF 162 (423)
T ss_pred eeeeehhhc
Confidence 555454443
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=81.12 E-value=11 Score=41.53 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=74.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc---eeee-------cC-----------cceEEeecCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK---QLSF-------QD-----------KAYTVEELTE 96 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~---~~~~-------~~-----------~~~~v~~~~~ 96 (376)
..||+|+|| |..|..+...++.++ ++++.+-.. ....+ .+.. .+ ..+... .+.
T Consensus 335 i~~v~ViGa-G~MG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 409 (737)
T TIGR02441 335 VKTLAVLGA-GLMGAGIAQVSVDKG---LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY 409 (737)
T ss_pred ccEEEEECC-CHhHHHHHHHHHhCC---CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 468999999 999999999988764 456544211 11111 0000 00 112222 233
Q ss_pred cCCCCCcEEEEcCCCchhhhh--HH---HHHhCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCCC
Q 017153 97 DSFDGVDIALFSAGGSISKKF--GP---IAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 97 ~~~~~~DvVf~a~~~~~s~~~--~~---~~~~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~~ 163 (376)
+.+.++|+|+.|.+-....+. .. ++...++.+-.++|.+..++ +.-+++=-.|+..+-+ -.
T Consensus 410 ~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~------Lv 483 (737)
T TIGR02441 410 SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQ------LL 483 (737)
T ss_pred HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCc------eE
Confidence 457899999999887665322 22 23456788999999987532 1124444445444332 13
Q ss_pred cEEEcCCchHHHHHHHHh
Q 017153 164 ALIANPNCSTIICLMAAT 181 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~ 181 (376)
.+|..+.+....+..+..
T Consensus 484 Evv~g~~Ts~~~~~~~~~ 501 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVA 501 (737)
T ss_pred EEeCCCCCCHHHHHHHHH
Confidence 456666655555554443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.09 E-value=2.4 Score=38.91 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|++.|.|+||.+|+.+.+.|.+++ .++..+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEe
Confidence 689999999999999999998863 4665543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=81.06 E-value=3.6 Score=41.84 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=40.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--e-cCc-----cCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--E-LTE-----DSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~-~~~-----~~~~~~DvVf~a~~~ 111 (376)
|+|.|+|+ |.+|+.+.+.|.+.+ .+++++......-+.+... ..+.+. + .+. ..+.++|+|+.|++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g---~~v~vid~~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGEN---NDVTVIDTDEERLRRLQDR-LDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-cCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 58999999 999999999998763 3565554321111111100 011221 1 111 124689999999987
Q ss_pred chh
Q 017153 112 SIS 114 (376)
Q Consensus 112 ~~s 114 (376)
+..
T Consensus 76 ~~~ 78 (453)
T PRK09496 76 DET 78 (453)
T ss_pred hHH
Confidence 554
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.00 E-value=3.1 Score=38.02 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|++|++|+.+.+.|.++ ..++..+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~---g~~v~~~~ 37 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAA---GYRVAIHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEc
Confidence 478999999999999999999886 34665554
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.99 E-value=2.6 Score=39.01 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|+|.|.|+||.+|..+.+.|.+++ .++..+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 579999999999999999998863 3555443
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.97 E-value=3.2 Score=38.46 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.+++.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G---~~v~~~~ 38 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREG---AKVAVLY 38 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 34789999999999999999998863 3555443
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.92 E-value=7.2 Score=39.85 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=52.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC--ceeeecCcceEEe-ec-CccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSFQDKAYTVE-EL-TEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~~~v~-~~-~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|.|+|+ |-+|..+.+.|.+++ .++...-...... ..+......+.+. .. +...+.++|+|+...+-.-.
T Consensus 5 ~~~~~v~G~-g~~G~~~a~~l~~~g---~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~ 80 (445)
T PRK04308 5 NKKILVAGL-GGTGISMIAYLRKNG---AEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISER 80 (445)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCC
Confidence 368999999 899999999999873 3555443221110 0111100123332 11 12224578999988766655
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
......+.++|+.|+
T Consensus 81 ~p~~~~a~~~~i~v~ 95 (445)
T PRK04308 81 QPDIEAFKQNGGRVL 95 (445)
T ss_pred CHHHHHHHHcCCcEE
Confidence 566777778899887
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=2.7 Score=39.03 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=24.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+|.|.|++|.+|..+++.|.+++ .++..+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g---~~Vi~~~ 32 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAG---AQLVLAA 32 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 478999999999999999988763 3665554
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=80.46 E-value=3.1 Score=40.97 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=51.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCc----cCC---CCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTE----DSF---DGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~----~~~---~~~DvVf~a~ 109 (376)
.-+|-|.||||-||.-+++++... .. ..+++++++.........+.+..+. +.+. .++ .++|+||++.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 368999999999999999988776 33 4444444332111111122222222 1110 112 3699999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEc
Q 017153 110 GGSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDl 131 (376)
+.....+....+.. |.+++..
T Consensus 220 G~~~~~~~l~~l~~-~G~lv~i 240 (326)
T COG0604 220 GGDTFAASLAALAP-GGRLVSI 240 (326)
T ss_pred CHHHHHHHHHHhcc-CCEEEEE
Confidence 98877766555544 4454433
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.33 E-value=3.3 Score=38.21 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=26.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
..++.|.|+||.+|.++++.|.+++ .+++.+..+
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G---~~v~i~~~r 39 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDG---ALVAIHYGR 39 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEcCC
Confidence 3689999999999999999998863 355444333
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.18 E-value=8.1 Score=39.84 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=56.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec----------------Cc--------ce-EEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ----------------DK--------AY-TVE 92 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~----------------~~--------~~-~v~ 92 (376)
+..||+|=|. |.||..+++.|.+. ..+++++++.+ |.-+... .. .+ ...
T Consensus 227 ~g~~vaIQGf-GnVG~~aA~~L~e~---GakvVavSD~~--G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~ 300 (445)
T PRK14030 227 KGKTVAISGF-GNVAWGAATKATEL---GAKVVTISGPD--GYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGST 300 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEEcCC--ceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCE
Confidence 3589999998 99999999999874 67888775422 2111100 00 00 011
Q ss_pred ecCccC-C-CCCcEEEEc-CCCchhhhhHHHHHhCCCeEEE
Q 017153 93 ELTEDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 93 ~~~~~~-~-~~~DvVf~a-~~~~~s~~~~~~~~~~G~~VID 130 (376)
.++.++ | .+|||.+-| ++.....+.++++.+.+|++|-
T Consensus 301 ~i~~~~~~~~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~ 341 (445)
T PRK14030 301 FFAGKKPWEQKVDIALPCATQNELNGEDADKLIKNGVLCVA 341 (445)
T ss_pred EcCCccceeccccEEeeccccccCCHHHHHHHHHcCCeEEE
Confidence 122233 3 479987765 6888888999999888999883
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=80.18 E-value=3.4 Score=40.18 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEe-ec--Cc----cCC--CCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVE-EL--TE----DSF--DGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~-~~--~~----~~~--~~~DvVf~a 108 (376)
.-+|.|.||+|-+|..+++++... ..++..+.+....-+.+.. .+.+..+. .. +. ... .++|++|.|
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~---G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLK---GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 368999999999999999887765 3465544432211111100 01111111 00 10 011 378999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEEcC
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
.+.....+.. .++..+.+++..+
T Consensus 229 ~g~~~~~~~~-~~l~~~G~iv~~G 251 (338)
T cd08295 229 VGGKMLDAVL-LNMNLHGRIAACG 251 (338)
T ss_pred CCHHHHHHHH-HHhccCcEEEEec
Confidence 9874444333 3445566676554
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.17 E-value=3.4 Score=38.19 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G---~~v~~~~ 42 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAG---AHVLVNG 42 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC---CeEEEEe
Confidence 3789999999999999999998863 4665554
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=80.12 E-value=12 Score=40.98 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=82.7
Q ss_pred CCEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecC-CCCCce---ee--------ec----------CcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASK-RSAGKQ---LS--------FQ----------DKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~-~~~g~~---~~--------~~----------~~~~~v~~~~ 95 (376)
-.||+|+|| |..|..+...++ .. .++++++-.. ....+. +. .+ ...+.+. .+
T Consensus 309 i~~v~ViGa-G~mG~giA~~~a~~~---G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~ 383 (708)
T PRK11154 309 VNKVGVLGG-GLMGGGIAYVTATKA---GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD 383 (708)
T ss_pred ccEEEEECC-chhhHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC
Confidence 468999999 999999999887 54 4466654321 111110 00 00 0123322 22
Q ss_pred ccCCCCCcEEEEcCCCchhhhh--HH---HHHhCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCC
Q 017153 96 EDSFDGVDIALFSAGGSISKKF--GP---IAVEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGK 162 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s~~~--~~---~~~~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~ 162 (376)
.+.+.++|+||.|.+-....+. .. ++...++.+-.+||.+...+ +--.++=-+|+..+-+ -
T Consensus 384 ~~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~------l 457 (708)
T PRK11154 384 YRGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMP------L 457 (708)
T ss_pred hHHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCc------e
Confidence 3456899999999887665332 22 33456788889999886432 1124555556554432 2
Q ss_pred CcEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 163 GALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 163 ~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
..||..+.+.+..+..+..-+ +..+...+.+
T Consensus 458 VEvv~g~~Ts~~~~~~~~~~~-~~~gk~pv~v 488 (708)
T PRK11154 458 VEVIPHAKTSAETIATTVALA-KKQGKTPIVV 488 (708)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHcCCceEEE
Confidence 457878877777666654443 4444445444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 376 | ||||
| 2yv3_A | 331 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 1e-77 | ||
| 2qz9_A | 336 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 3e-71 | ||
| 2r00_C | 336 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 7e-70 | ||
| 2gyy_A | 366 | Structure Of Aspartate Semialdehyde Dehydrogenase ( | 4e-63 | ||
| 3vos_A | 362 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 3e-57 | ||
| 3tz6_A | 344 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 4e-57 | ||
| 2hjs_A | 340 | The Structure Of A Probable Aspartate-Semialdehyde | 2e-26 | ||
| 1ys4_A | 354 | Structure Of Aspartate-Semialdehyde Dehydrogenase F | 5e-17 | ||
| 3uw3_A | 377 | Crystal Structure Of An Aspartate-Semialdehyde Dehy | 5e-14 | ||
| 1mc4_A | 370 | Crystal Structure Of Aspartate-Semialdehyde Dehydro | 5e-14 | ||
| 1nwc_A | 371 | Crystal Structure Of Aspartate-Semialdehyde Dehydro | 1e-13 | ||
| 1pr3_A | 371 | Crystal Structure Of The R103k Mutant Of Aspartate | 4e-13 | ||
| 1ps8_A | 371 | Crystal Structure Of The R270k Mutant Of Aspartate | 4e-13 | ||
| 1brm_A | 367 | Aspartate Beta-Semialdehyde Dehydrogenase From Esch | 6e-13 | ||
| 1t4b_A | 367 | 1.6 Angstrom Structure Of Esherichia Coli Aspartate | 6e-13 | ||
| 1oza_A | 371 | Crystal Structure Of The R103l Mutant Of Aspartate | 1e-12 | ||
| 1pqu_A | 371 | Crystal Structure Of The H277n Mutant Of Aspartate | 1e-12 | ||
| 2ep5_A | 350 | Structural Study Of Project Id St1242 From Sulfolob | 2e-12 | ||
| 1pqp_A | 371 | Crystal Structure Of The C136s Mutant Of Aspartate | 3e-12 | ||
| 1nwh_A | 371 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 3e-12 | ||
| 1pu2_A | 371 | Crystal Structure Of The K246r Mutant Of Aspartate | 6e-12 | ||
| 1q2x_A | 371 | Crystal Structure Of The E243d Mutant Of Aspartate | 8e-12 | ||
| 3hsk_A | 381 | Crystal Structure Of Aspartate Semialdehyde Dehydro | 6e-09 | ||
| 4dpk_A | 359 | Structure Of Malonyl-coenzyme A Reductase From Cren | 1e-05 |
| >pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase From Thermus Thermophilus Hb8 Length = 331 | Back alignment and structure |
|
| >pdb|2QZ9|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Ii From Vibrio Cholerae Length = 336 | Back alignment and structure |
|
| >pdb|2R00|C Chain C, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Ii Complexed With Asa From Vibrio Cholerae Length = 336 | Back alignment and structure |
|
| >pdb|2GYY|A Chain A, Structure Of Aspartate Semialdehyde Dehydrogenase (Asadh) From Streptococcus Pneumoniae Length = 366 | Back alignment and structure |
|
| >pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Complexed With Glycerol And Sulfate From Mycobacterium Tuberculosis H37rv Length = 362 | Back alignment and structure |
|
| >pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase Complexed With Inhibitor Smcs (Cys) And Phosphate From Mycobacterium Tuberculosis H37rv Length = 344 | Back alignment and structure |
|
| >pdb|2HJS|A Chain A, The Structure Of A Probable Aspartate-Semialdehyde Dehydrogenase From Pseudomonas Aeruginosa Length = 340 | Back alignment and structure |
|
| >pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From Methanococcus Jannaschii Length = 354 | Back alignment and structure |
|
| >pdb|3UW3|A Chain A, Crystal Structure Of An Aspartate-Semialdehyde Dehydrogenase From Burkholderia Thailandensis Length = 377 | Back alignment and structure |
|
| >pdb|1MC4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase From Vibrio Cholerae El Tor Length = 370 | Back alignment and structure |
|
| >pdb|1NWC|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|1PR3|A Chain A, Crystal Structure Of The R103k Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|1PS8|A Chain A, Crystal Structure Of The R270k Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|1BRM|A Chain A, Aspartate Beta-Semialdehyde Dehydrogenase From Escherichia Coli Length = 367 | Back alignment and structure |
|
| >pdb|1T4B|A Chain A, 1.6 Angstrom Structure Of Esherichia Coli Aspartate- Semialdehyde Dehydrogenase. Length = 367 | Back alignment and structure |
|
| >pdb|1OZA|A Chain A, Crystal Structure Of The R103l Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Bound With Nadp, S-Methyl Cysteine Sulfoxide And Cacodylate Length = 371 | Back alignment and structure |
|
| >pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus Tokodaii Strain7 Length = 350 | Back alignment and structure |
|
| >pdb|1PQP|A Chain A, Crystal Structure Of The C136s Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Bound With Aspartate Semialdehyde And Phosphate Length = 371 | Back alignment and structure |
|
| >pdb|1NWH|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae As A Tetrahedral Hemithioacetal Reaction Intermediate At 2.0 A Length = 371 | Back alignment and structure |
|
| >pdb|1PU2|A Chain A, Crystal Structure Of The K246r Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Length = 371 | Back alignment and structure |
|
| >pdb|1Q2X|A Chain A, Crystal Structure Of The E243d Mutant Of Aspartate Semialdehyde Dehydrogenase From Haemophilus Influenzae Bound With Substrate Aspartate Semialdehyde Length = 371 | Back alignment and structure |
|
| >pdb|3HSK|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase With Nadp From Candida Albicans Length = 381 | Back alignment and structure |
|
| >pdb|4DPK|A Chain A, Structure Of Malonyl-coenzyme A Reductase From Crenarchaeota Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 376 | |||
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 0.0 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 0.0 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 0.0 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 0.0 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 0.0 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 1e-176 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 1e-173 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 1e-172 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 1e-137 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 1e-132 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 1e-125 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 9e-13 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 1e-09 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 1e-07 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 2e-05 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 2e-05 |
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} Length = 331 | Back alignment and structure |
|---|
Score = 579 bits (1495), Expect = 0.0
Identities = 167/335 (49%), Positives = 222/335 (66%), Gaps = 9/335 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG+E L VL R+FP +++ AS RSAG +L+F+ + VE L E
Sbjct: 3 VAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL-P 61
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VD+ L SAGG IS+ + E G++VVDNSSA+R VPLV+PEVN E + +
Sbjct: 62 VDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQHR---- 117
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNC+T I MA PLHR + R++V+TYQAASGAGA AMEEL +T L G
Sbjct: 118 --GIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHG 175
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVM 281
+ P + F+ FN+ H ENGY EEMK+V ET KI+ D +R++AT +RVP +
Sbjct: 176 EAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVWETHKIFGDDTIRISATAVRVPTL 235
Query: 282 RAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRR 341
RAHAE+V+++F +P+ + AR++LK APGV V+D+ + +P PL S K DV VGRIR+
Sbjct: 236 RAHAEAVSVEFARPVTPEAAREVLKEAPGVEVVDEPEAKRYPMPLTASGKWDVEVGRIRK 295
Query: 342 DVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
++ + +GLD FV GDQ+ KGAALNAVQIAE L
Sbjct: 296 SLAFE--NGLDFFVVGDQLLKGAALNAVQIAEEWL 328
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A Length = 366 | Back alignment and structure |
|---|
Score = 566 bits (1461), Expect = 0.0
Identities = 149/355 (41%), Positives = 205/355 (57%), Gaps = 24/355 (6%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
M Y +VAVVG TGAVG + + +L + P I+ LAS RSAGK L F+D+ T+E
Sbjct: 1 MGY-----TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIE 55
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
E TE +F+GVDIALFSAG S S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A
Sbjct: 56 ETTETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHA 115
Query: 153 MSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELE 212
+ +IA PNCSTI ++A P+ ++ + R++VSTYQA SGAG A+ E +
Sbjct: 116 LDAHN------GIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQ 169
Query: 213 LQTREVLEGK-----------PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261
+ REVL P AFN +N Y EEMKM KET+
Sbjct: 170 RELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETK 229
Query: 262 KIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNH 321
KI D + V+ATC+R+PV+ AH+ESV ++ ++ + + + PG V+ DD A
Sbjct: 230 KIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQI 289
Query: 322 FPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+P + D VGRIR+D+ + G+ ++V D + KGAA N+VQIAE L
Sbjct: 290 YPQAINAVGSRDTFVGRIRKDLDAE--KGIHMWVVSDNLLKGAAWNSVQIAETLH 342
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 Length = 340 | Back alignment and structure |
|---|
Score = 554 bits (1431), Expect = 0.0
Identities = 97/346 (28%), Positives = 168/346 (48%), Gaps = 14/346 (4%)
Query: 32 RMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV 91
MS +VAVVG TG+VG+ + +L +RDFP + +LAS SAG+++ F + + V
Sbjct: 2 HMS---QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV 58
Query: 92 EELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
++ F V +A F+A +S+ A G V+D S A P V+ VN E
Sbjct: 59 GDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP-SVAPPVMVSVNAE 117
Query: 152 AMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEEL 211
++ L+++P PL ++ ++ + S G ++EL
Sbjct: 118 RLASQA----APFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKEL 173
Query: 212 ELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRV 271
QT E+L +P ++F +Q AFNL + V G++ E ++ E + + ++ +
Sbjct: 174 ARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPL 233
Query: 272 TATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSN 330
TCI+ PV + SV LQ +P+D +L G+ + + +PT + +
Sbjct: 234 NVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGE---GDYPTVVGDALG 290
Query: 331 KDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+D+ VGR+R + +++++ D VRKGAALNAV + E+L+
Sbjct: 291 QDETYVGRVRAGQADP--CQVNLWIVSDNVRKGAALNAVLLGELLI 334
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* Length = 336 | Back alignment and structure |
|---|
Score = 553 bits (1428), Expect = 0.0
Identities = 153/336 (45%), Positives = 213/336 (63%), Gaps = 10/336 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VA+ G TGAVG+ L VL +R+FP + +LAS+RS GK F K V+ + E +
Sbjct: 6 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQ 65
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V IALFSAGG +S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ +
Sbjct: 66 VHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR---- 121
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNCSTI L+A P++ + R+ V+TYQ+ SGAG A ++EL QT ++L G
Sbjct: 122 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 181
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVM 281
P FSQQ AFN ++NGY +EEMKMV ET+KI+ND + V TC+RVPV
Sbjct: 182 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRVPVF 241
Query: 282 RAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIR 340
HAE+V+++ P+D + D+L+ G+ + FPT + + KD V VGR+R
Sbjct: 242 YGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRG---ADFPTQVRDAGGKDHVLVGRVR 298
Query: 341 RDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
D+S G++++V D VRKGAA NAVQIAE+L+
Sbjct: 299 NDISHH--SGINLWVVADNVRKGAATNAVQIAELLV 332
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A Length = 344 | Back alignment and structure |
|---|
Score = 551 bits (1422), Expect = 0.0
Identities = 142/351 (40%), Positives = 203/351 (57%), Gaps = 23/351 (6%)
Query: 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS 98
S+ +VG TG VGQ ++L +RDFP +++ AS RS G++L+F+ + VE+
Sbjct: 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETAD 60
Query: 99 FDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
G+DIALFSAG ++SK P G V+DNSSA+R +VPLV+ EVN E + +
Sbjct: 61 PSGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRR- 119
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
KG +IANPNC+T+ + LH A++ R+VVS+YQA SG+G A + EL Q R V
Sbjct: 120 --PKG-IIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAV 176
Query: 219 LEGKP-----------PTCKIFSQQYAFNLFSHNAPVLENGYNE--EEMKMVKETRKIWN 265
+ G P + AFN+ ++++G E E+ K+ E+RKI
Sbjct: 177 IGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILG 236
Query: 266 DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP 325
D+ V+ TC+RVPV H+ S+N +F +PL + AR++L A GV ++D PTP
Sbjct: 237 IPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGATGVQLVD------VPTP 290
Query: 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
L + D+ VGRIRRD GL +FV GD +RKGAALN +QIAE+L
Sbjct: 291 LAAAGVDESLVGRIRRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELLT 341
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} Length = 377 | Back alignment and structure |
|---|
Score = 494 bits (1275), Expect = e-176
Identities = 98/377 (25%), Positives = 150/377 (39%), Gaps = 42/377 (11%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE 96
+ +V +VG G VG + + + DF ++ + GK SF T+++ T
Sbjct: 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATS 62
Query: 97 -DSFDGVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAM 153
D D+ + GG + P G +D +S+ RM ++ +++ VN +
Sbjct: 63 IDDLKKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVI 122
Query: 154 SGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELEL 213
V G NC+ + LMA L R V M TYQAASGAGA M EL
Sbjct: 123 KDALVN-GTK-NFIGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLA 180
Query: 214 QTREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248
Q + + G F A +L L NG
Sbjct: 181 QMGTLNGAVAAQLADPASAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNG 240
Query: 249 YNEEEMKMVKETRKIWN------DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTAR 302
+ EE K ET KI V V C+R+ MR H++++ ++ +K + D
Sbjct: 241 MSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKDVPLDEIN 300
Query: 303 DILKNAPGVVVI---DDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQ 359
IL +A V + + AS +P +V+ V VGR+R+ G L F GDQ
Sbjct: 301 GILASANDWVKVVPNEREASMRDLSPAKVTGTLSVPVGRLRKLAM--GGEYLSAFTVGDQ 358
Query: 360 VRKGAALNAVQIAEMLL 376
+ GAA ++ +LL
Sbjct: 359 LLWGAAEPLRRMLRILL 375
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A Length = 370 | Back alignment and structure |
|---|
Score = 486 bits (1254), Expect = e-173
Identities = 90/370 (24%), Positives = 150/370 (40%), Gaps = 40/370 (10%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSF 99
V +VG G VG + ++ +RDF ++ + +F A + + +S
Sbjct: 3 VGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+D + GGS ++K P + G +D +S RM + + + VN + I
Sbjct: 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQ---IL 119
Query: 158 VGMGKGA-LIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTR 216
G+ G NC+ + LMA L+ R V M TYQAASGAGA M EL Q
Sbjct: 120 HGIHHGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMG 179
Query: 217 EV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251
+ + F A +L +NG ++
Sbjct: 180 VINDAVSSELANPASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSK 239
Query: 252 EEMKMVKETRKIWN--DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP 309
EE K E KI D V + TC+R+ MR H++++ ++ ++ + D +++
Sbjct: 240 EEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATHN 299
Query: 310 GVVVI---DDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAAL 366
V + + + TP +V+ V VGR+R+ D L+ F GDQ+ GAA
Sbjct: 300 DWVKVIPNERDITARELTPAKVTGTLSVPVGRLRKMAMGD--DFLNAFTVGDQLLWGAAE 357
Query: 367 NAVQIAEMLL 376
+ ++L
Sbjct: 358 PLRRTLRIIL 367
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* Length = 367 | Back alignment and structure |
|---|
Score = 482 bits (1244), Expect = e-172
Identities = 90/370 (24%), Positives = 147/370 (39%), Gaps = 39/370 (10%)
Query: 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-D 97
+V +G G VG + ++ +RDF ++ + SF T+++ + +
Sbjct: 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLE 61
Query: 98 SFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ +DI + GG + + P E G +D +S+ RM ++ +++ VN +
Sbjct: 62 ALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDV--- 118
Query: 156 IKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQ 214
I G+ G NC+ + LM+ L V + V+TYQAASG GA M EL Q
Sbjct: 119 ITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQ 178
Query: 215 TREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249
+ F A +L L+NG
Sbjct: 179 MGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQ 238
Query: 250 NEEEMKMVKETRKIWNDKD-VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308
+ EE K ET KI N + V C+RV +R H+++ ++ +K + T ++L
Sbjct: 239 SREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAH 298
Query: 309 ---PGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAA 365
VV D + TP V+ VGR+R+ G L F GDQ+ GAA
Sbjct: 299 NPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNM--GPEFLSAFTVGDQLLWGAA 356
Query: 366 LNAVQIAEML 375
++ L
Sbjct: 357 EPLRRMLRQL 366
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Length = 350 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-137
Identities = 87/367 (23%), Positives = 154/367 (41%), Gaps = 60/367 (16%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ------------LSFQDKAY 89
V+++G TG VGQ+ + +L+ + +K+ AS GK+ + + +
Sbjct: 7 VSLLGSTGMVGQKMVKMLAKHPY-LELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDL 65
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVN 149
+ + VD+ L + +++ V+ G IVV N+S FRM +VPL+ PE+N
Sbjct: 66 PIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEIN 125
Query: 150 PEAMSGIKV----GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGA 205
E + +K KG L+ NPNC+ I M PL A ++++++T QA SGAG
Sbjct: 126 WEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGY 185
Query: 206 AAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMV--KETRKI 263
+ + + N+ + E+ +E K+ E +I
Sbjct: 186 NGISFMAI--------------------EGNIIPYI-KGEEDKIAKELTKLNGKLENNQI 224
Query: 264 WNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPG------------- 310
++ T T IRVP H +N+ + ++ + + LKN
Sbjct: 225 -IPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKSLPQQKNLPTAPKQ 283
Query: 311 -VVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAV 369
++V D+ + + V VGRIR + N+ L + V GD + +GAA +
Sbjct: 284 PIIVRDEEDRPQPIIDVNAESGMAVTVGRIRHE-----NNVLRLVVLGDNLVRGAAGITI 338
Query: 370 QIAEMLL 376
E++
Sbjct: 339 LTVEVMK 345
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} Length = 354 | Back alignment and structure |
|---|
Score = 380 bits (978), Expect = e-132
Identities = 96/389 (24%), Positives = 165/389 (42%), Gaps = 78/389 (20%)
Query: 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ 85
M +M V V+G TG+VGQ F+ +L+D P + L AS+RSAGK+
Sbjct: 1 MSKGEKMKI-----KVGVLGATGSVGQRFVQLLADH--PMFELTALAASERSAGKKYKDA 53
Query: 86 DKAYTVEELTE--------------DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDN 131
+ ++ E + F+ VDI + ++KKF P ++G ++ N
Sbjct: 54 CYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSN 113
Query: 132 SSAFRMVENVPLVIPEVNPEAMSGIKVGMG----KGALIANPNCSTIICLMAATPLHRRA 187
+SA+RM E+VPLVIPEVN + + I++ GA+I NPNCSTI ++ P+ +
Sbjct: 114 ASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKF 173
Query: 188 KVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247
+ + ++T QA SGAG + + + NL
Sbjct: 174 GLEAVFIATMQAVSGAGYNGVPSMAI--------------------LDNLIPF------- 206
Query: 248 GYNEEEMKMVKETRKIWN--------DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDED 299
EE KM E+ K+ + +++A+C RV V+ H ES+ ++ ++ + +
Sbjct: 207 -IKNEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPE 265
Query: 300 TARDILKNAPGV------------VVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDG 347
++++ + V+ ++ N + VGRIR+D
Sbjct: 266 EIKEVMDKFDPLKDLNLPTYAKPIVIREEIDRPQPRLDRNEGNGMSIVVGRIRKDPI--- 322
Query: 348 NHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+ +GAA +V AE +
Sbjct: 323 -FDVKYTALEHNTIRGAAGASVLNAEYFV 350
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} Length = 381 | Back alignment and structure |
|---|
Score = 365 bits (938), Expect = e-125
Identities = 97/411 (23%), Positives = 154/411 (37%), Gaps = 91/411 (22%)
Query: 20 NKPRTKPMFTR-VRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRS 77
+ + + R MS V+G TG+VGQ F+ +LS P I L AS RS
Sbjct: 3 HHHHSSGLVPRGSHMS----VKKAGVLGATGSVGQRFILLLSKH--PEFEIHALGASSRS 56
Query: 78 AGKQLSF------------QDKAYTVEELTED-SFDGVDIALFSAGGSISKKFGPIAVEK 124
AGK+ ++ V+E + +F D+ ++ VE
Sbjct: 57 AGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEA 116
Query: 125 GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---------GMGKGALIANPNCSTII 175
G VV N+ +R ++VPLV+P VNPE + ++ G G +I NCST
Sbjct: 117 GLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAG 176
Query: 176 CLMAATPLHRR-AKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYA 234
+ PL + + + +T QA SGAG + +
Sbjct: 177 LVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPG-------------------VSGMDIL 217
Query: 235 FNLFSHNAPVLENGYNEEEMKMVKETRKIW-------------NDKDVRVTATCIRVPVM 281
N+ + + EE K+ ET+KI + +++V+A C RVPV+
Sbjct: 218 DNIVPY--------ISGEEDKLEWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVI 269
Query: 282 RAHAESVNLQFEK--PLDEDTARDILKNAPG--------------VVVIDDRASNHFPTP 325
H E ++L+F + + L+ + V+D
Sbjct: 270 DGHTECISLRFANRPAPSVEDVKQCLREYECAASKLGCHSAPKQTIHVLDQPDRPQPRLD 329
Query: 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376
+ + V+VGRIR D D + V GAA + IAE+L
Sbjct: 330 RDRDSGYGVSVGRIREDSLLD----FKMVVLSHNTIIGAAGAGILIAEILK 376
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 Length = 312 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 9e-13
Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 31/242 (12%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAG----KQLSFQDKAYTVEEL 94
VA++G +G +G + + + R+ Y + + S G +++ VE L
Sbjct: 6 KVAIIG-SGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGL 63
Query: 95 TE-DSFDGVDIALF--SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
+ F +D SA + + + G ++D + A P +P VN E
Sbjct: 64 IKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIG----PYCVPVVNLE 119
Query: 152 AMSGIK-VGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEE 210
G V M + +TI + A + + + + + ++A A ++E
Sbjct: 120 EHLGKLNVNM-----VTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDE 174
Query: 211 LELQTREVLE--GKPPTCK---IFSQQYAFNLFSHNAPVLENGYNEEE-----MKMVKET 260
T + +E G K I + + VL ++ +MV+
Sbjct: 175 FTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAV 234
Query: 261 RK 262
+
Sbjct: 235 QA 236
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} Length = 345 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 64/368 (17%), Positives = 117/368 (31%), Gaps = 87/368 (23%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQDKAYTVE 92
++++VG +G G EFL + PY +K + S+R AG+ + + +
Sbjct: 6 TLSIVGASGYAGGEFLRLALSH--PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFV-- 61
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFR---------------- 136
+ + DI + + + + ++VD S+ FR
Sbjct: 62 --PPEKLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPR 119
Query: 137 --MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
++ +PE+ EA+ KGA IA C+ L+ PL K T
Sbjct: 120 PDLLGRFVYAVPELYREAL--------KGADWIAGAGCNATATLLGLYPLLKAGVLKPTP 171
Query: 192 MVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGYN 250
+ V+ + S GA A E + H + +
Sbjct: 172 IFVTLLISTSAGGAEASPASHHP--ERAGS-------IR---VYKPTGHRHTAEV----- 214
Query: 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMR-AHAESVNLQFEKPLDEDTARDIL---- 305
E + V T I +R + + E
Sbjct: 215 VENLP-----------GRPEVHLTAIATDRVRGILM-TAQCFVQDGWSERDVWQAYREAY 262
Query: 306 KNAPGVVVIDDRASNH-FPTPLEV--SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRK 362
P + ++ + H +P P V +N D+ ++ +D L + D + K
Sbjct: 263 AGEPFIRLVKQKKGVHRYPDPRFVQGTNYADIGF-----ELEEDTGR-LVVMTAIDNLVK 316
Query: 363 GAALNAVQ 370
G A +A+Q
Sbjct: 317 GTAGHALQ 324
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 68/368 (18%), Positives = 130/368 (35%), Gaps = 87/368 (23%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAY------TVEELT 95
+ ++G +G G E + +L++ P+ + ++ + R AG+ + T+ +
Sbjct: 19 IGLLGASGYTGAEIVRLLANH--PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK 76
Query: 96 EDSFDGVDIALFSA---GGSISKKFGPIAVEKGSIVVDNSSAFR---------------- 136
+ F VD F G +++ + +VD S+ FR
Sbjct: 77 DADFSTVDAV-FCCLPHG--TTQEIIK-ELPTALKIVDLSADFRLRNIAEYEEWYGQPHK 132
Query: 137 ---MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVT 190
+ + V + E+ E + K A L+ANP C + PL K
Sbjct: 133 AVELQKEVVYGLTEILREDI--------KKARLVANPGCYPTTIQLPLVPLLKANLIKHE 184
Query: 191 RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGY 249
+++ SGAG A E E+ EG S ++ + H + P
Sbjct: 185 NIIIDAKSGVSGAGRGAKEANLYS--EIAEG-------IS---SYGVTRHRHVP------ 226
Query: 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMR-AHAESVNLQFEKPLDEDTARDIL--- 305
E+ ++ V V+ T +P++R + ++ ++ + + L
Sbjct: 227 ---EI---EQGLSDVAQSKVTVSFTPHLMPMIRGMQS-TIYVEMAPGVRTEDLHQQLKTS 279
Query: 306 -KNAPGVVVIDDRASNHFPTPLEV--SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRK 362
++ V V+D+ P V SN ++V R I D + K
Sbjct: 280 YEDEEFVKVLDE---GVVPRTHNVRGSNYCHMSVFPDRI------PGRAIIISVIDNLVK 330
Query: 363 GAALNAVQ 370
GA+ A+Q
Sbjct: 331 GASGQALQ 338
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A Length = 337 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 44/201 (21%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLS--------FQDKAY 89
+ +VG +G G E ++ ++ P+ +I L AGK +S +
Sbjct: 6 NTLIVGASGYAGAELVTYVNRH--PHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPL 63
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFR------------- 136
+ GVD+ + +S P +E G +V D S AFR
Sbjct: 64 QPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGF 123
Query: 137 ------MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV 189
++E + E + K A LIA P C +A PL +
Sbjct: 124 THQYPELLEQAAYGLAEWCGNKL--------KEANLIAVPGCYPTAAQLALKPLIDADLL 175
Query: 190 ---TRMVVSTYQAASGAGAAA 207
V++ SGAG A
Sbjct: 176 DLNQWPVINATSGVSGAGRKA 196
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 5e-06
Identities = 62/442 (14%), Positives = 116/442 (26%), Gaps = 162/442 (36%)
Query: 18 PANKPRTKPMFTRVRMSYQE--SAPSVAVVGVTGAVGQEFL--SVLSDRD----FPYR-- 67
N R +P + ++R + E A +V + GV G+ G+ ++ V ++
Sbjct: 128 KYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIF 185
Query: 68 ------------SIKMLAS----------------------KRSAGKQLS--FQDKAYT- 90
++ML S +L + K Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 91 -------VEELTE-DSFD-GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENV 141
V+ ++F+ I L + ++ A + +S E
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVK 304
Query: 142 PLV----------IPE----VNPEAMSGIKVGMGKGALIANPNC-------------STI 174
L+ +P NP +S I I + +TI
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCDKLTTI 358
Query: 175 I--CLMAATP-LHRR-----------AKVTRMVVSTYQAASGAGAAAMEELELQTREVLE 220
I L P +R+ A + +++S + +L ++E
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 221 --GKPPTCKIFS--------------------QQYAFNL-FSHN--APVLENGY------ 249
K T I S Y F + P + Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 250 ----NEEEMKMVKETRKI-----WNDKDVRVTATCIRVPVMRAHAESVNL--QFEK---- 294
N E + + R + + ++ +R +T +N Q +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-----GSILNTLQQLKFYKPY 533
Query: 295 -----PLDEDTARDILKNAPGV 311
P E IL P +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKI 555
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 5e-06
Identities = 47/338 (13%), Positives = 92/338 (27%), Gaps = 82/338 (24%)
Query: 14 ISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73
I T +F + S QE +V Q+F+ + ++ + L
Sbjct: 54 IIMSKDAVSGTLRLFWTLL-SKQEE-----MV-------QKFVEEVLRINYKF-----LM 95
Query: 74 SK-RSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132
S ++ +Q S + Y E + ++ + F V +
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYNDNQV------------FAKYNVSR-------- 133
Query: 133 SAFRMVENVPLVIPEVNPEAMSGIKV-GM---GKGALIANPNCST--IICLMA------- 179
+ + + E+ P + + G+ GK + + C + + C M
Sbjct: 134 --LQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLN 188
Query: 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF-SQQYAFNLF 238
+ V M+ + + + + ++ S+ Y L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 239 SHNAPVLENGYNEEEM-------KMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQ 291
VL N N + K++ TR K V T H +
Sbjct: 249 -----VLLNVQNAKAWNAFNLSCKILLTTR----FKQV----TDFLSAATTTHISLDHH- 294
Query: 292 FEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVS 329
L D + +L D P +S
Sbjct: 295 -SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A Length = 352 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 71/368 (19%), Positives = 113/368 (30%), Gaps = 85/368 (23%)
Query: 41 SVAVVGVTGAVGQEFLSVLS---DRDFPYRSIKMLASKRSAGKQLS--------FQDKAY 89
VAV G +G G E L +L I L + SAG L +
Sbjct: 11 KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHR-- 68
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPL------ 143
VE G D + S + ++++D + FR+ + +
Sbjct: 69 VVEPTEAAVLGGHDAVFLALPHGHSAVLAQ-QLSPETLIIDCGADFRL-TDAAVWERFYG 126
Query: 144 -------V--IPEV--NPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV-T 190
+PE+ + + +G IA P C L+A P +
Sbjct: 127 SSHAGSWPYGLPELPGARDQL--------RGTRRIAVPGCYPTAALLALFPALAADLIEP 178
Query: 191 RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS---HNAPVLEN 247
+ V SGAG AA +L EV+ A+N+ H
Sbjct: 179 AVTVVAVSGTSGAGRAATTDLLGA--EVIGS-------AR---AYNIAGVHRHTP----- 221
Query: 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMR-AHAESVNLQFEKPLDE--DTARDI 304
E+ + + D+DV V+ T + +P R A + + PL +
Sbjct: 222 -----EI---AQGLRAVTDRDVSVSFTPVLIPASRGILA-TCTARTRSPLSQLRAAYEKA 272
Query: 305 LKNAPGVVVIDDRASNHFPTPLEV--SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRK 362
P + ++ + P V SN +AV D + K
Sbjct: 273 YHAEPFIYLMPEGQ---LPRTGAVIGSNAAHIAVAVDED------AQTFVAIAAIDNLVK 323
Query: 363 GAALNAVQ 370
G A AVQ
Sbjct: 324 GTAGAAVQ 331
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 351 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 46/200 (23%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----FQDKAYTVEELTE 96
++G TG G E + +L + P I L+S+ AGK+L + + E E
Sbjct: 16 AGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 73
Query: 97 DSFDGVDIALFS----AGGSISKKFGPIAVEKGSIVVDNSSAFRM--------------- 137
D+ + A + ++ KG ++D + FR
Sbjct: 74 KVSKNCDVLFTALPAGASYDLVREL------KGVKIIDLGADFRFDDPGVYREWYGKELS 127
Query: 138 -VENVPLV--IPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
EN+ V +PE++ E + K A ++ NP C ++A P H
Sbjct: 128 GYENIKRVYGLPELHREEI--------KNAQVVGNPGCYPTSVILALAPALKHNLVDPET 179
Query: 192 MVVSTYQAASGAGAAAMEEL 211
++V SGAG +
Sbjct: 180 ILVDAKSGVSGAGRKEKVDY 199
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 376 | |||
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 100.0 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 100.0 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 100.0 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 100.0 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 100.0 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 100.0 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 100.0 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 100.0 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 100.0 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 100.0 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 100.0 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 100.0 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 100.0 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 100.0 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 100.0 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 100.0 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 100.0 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 100.0 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 100.0 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 100.0 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 100.0 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 100.0 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 100.0 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 100.0 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 100.0 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 100.0 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 100.0 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 100.0 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 100.0 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 100.0 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 100.0 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 100.0 | |
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 100.0 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 100.0 | |
| 3v1y_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 100.0 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 100.0 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 100.0 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 100.0 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 100.0 | |
| 3ids_C | 359 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g | 100.0 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 100.0 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 100.0 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 99.96 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 99.71 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 98.54 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.44 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 98.38 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.32 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 98.3 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.24 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.16 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.12 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.1 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.08 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.07 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.04 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.03 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.02 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.99 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.95 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.93 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.93 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.91 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.9 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.9 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.9 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.88 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.88 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.84 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.84 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.83 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.82 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.81 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.81 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.77 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.76 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.75 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.75 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.75 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.74 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.74 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.72 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.7 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.69 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.69 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.68 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.67 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.67 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.66 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.64 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.64 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.63 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 97.62 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.61 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.61 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.56 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.55 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.52 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.51 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.51 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.49 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.48 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.47 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.42 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.41 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.41 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.41 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.39 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 97.37 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.37 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.36 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.36 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 97.35 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 97.35 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.31 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.27 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.26 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.23 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 97.22 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.21 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.21 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 97.21 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.19 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.18 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.18 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.15 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.13 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.13 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.11 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.1 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.1 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 97.09 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 97.08 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.08 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 97.07 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.07 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.05 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.05 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.04 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.04 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 97.04 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 97.03 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.03 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.02 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.02 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.02 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 97.01 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.0 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 96.98 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.98 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.97 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.96 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.96 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.95 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 96.93 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.91 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 96.88 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.88 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 96.87 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 96.85 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.84 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 96.84 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 96.83 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.83 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 96.81 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.81 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 96.8 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 96.79 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.79 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.79 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.78 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.77 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.77 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 96.74 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 96.74 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 96.74 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 96.74 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.72 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.7 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 96.7 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.68 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 96.67 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.66 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 96.63 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.63 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 96.63 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.6 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 96.6 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 96.59 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 96.58 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 96.58 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 96.57 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.55 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.53 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 96.52 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 96.52 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 96.5 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 96.49 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 96.46 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.45 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 96.44 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 96.43 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.43 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 96.43 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.4 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.4 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.38 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.37 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 96.35 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 96.34 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 96.33 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 96.32 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 96.32 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 96.31 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 96.3 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.3 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 96.28 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 96.26 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.26 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 96.25 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.24 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 96.21 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 96.2 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 96.19 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 96.17 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.16 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 96.16 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 96.15 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.12 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 96.11 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.11 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.08 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 96.05 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 95.97 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 95.97 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.95 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 95.89 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 95.84 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 95.83 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.82 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 95.75 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.74 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 95.74 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 95.74 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 95.74 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.73 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.72 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.71 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 95.69 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 95.68 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 95.66 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.65 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 95.64 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 95.63 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 95.62 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 95.58 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.57 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 95.55 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 95.52 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.47 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.46 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.44 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 95.37 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 95.31 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 94.26 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 95.25 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 95.25 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 95.24 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 95.23 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 95.23 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 95.21 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 95.19 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.18 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 95.17 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 95.15 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 95.15 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.12 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.1 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 95.09 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 95.08 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 95.08 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 95.06 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 95.05 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.03 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 94.99 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.97 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 94.95 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 94.95 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 94.92 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 94.91 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 94.9 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 94.89 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 94.88 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 94.85 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 94.83 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 94.82 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 94.79 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 94.76 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 94.7 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 94.69 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 94.67 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 94.66 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.66 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 94.65 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 94.64 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 94.63 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.61 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 94.58 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 94.56 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 94.52 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 94.5 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 94.47 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 94.43 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 94.43 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 94.43 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 94.41 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 94.39 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 94.38 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 94.36 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 94.32 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 94.26 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 94.21 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 94.21 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 94.17 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.15 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 94.15 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 94.11 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 94.03 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 94.02 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 94.0 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.97 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 93.97 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 93.96 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 93.95 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 93.95 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.94 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 93.9 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 93.88 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 93.87 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 93.86 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 93.85 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 93.8 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 93.78 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.73 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 93.73 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 93.7 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 93.69 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 93.62 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 93.57 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 93.54 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 93.53 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 93.49 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 93.44 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 93.42 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 93.36 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 93.36 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 93.34 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 93.31 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 93.3 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 93.28 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 93.28 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 93.25 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 93.22 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 93.2 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.19 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 93.03 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 92.97 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 92.95 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 92.94 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 92.92 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 92.87 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 92.73 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 92.72 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 92.71 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 92.69 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 92.66 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 92.65 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 92.6 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 92.59 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 92.59 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 92.52 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 92.42 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 92.41 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 92.3 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 92.29 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 92.25 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 92.25 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 92.24 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 92.24 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 92.16 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 92.1 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 91.96 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 91.96 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 91.95 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 91.55 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 91.54 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 91.49 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 91.48 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 91.46 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 91.44 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 91.44 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 91.41 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 91.36 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 91.29 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 91.15 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 91.11 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 91.09 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 91.06 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 91.01 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 90.88 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 90.81 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 90.8 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.79 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 90.79 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 90.68 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 90.62 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 90.61 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 90.46 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 90.46 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 90.44 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 90.32 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 90.21 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 90.17 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 90.02 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 89.86 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 89.82 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 89.79 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 89.78 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 89.75 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 89.72 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 89.71 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 89.63 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 89.62 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 89.61 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 89.51 | |
| 1q0q_A | 406 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o | 89.47 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 89.41 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 89.37 | |
| 2y1e_A | 398 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o | 89.29 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 89.25 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 89.14 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 89.13 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 89.11 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 89.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 88.81 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 88.72 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 88.7 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 88.65 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 88.59 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 88.54 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 88.48 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 88.39 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 88.38 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 88.33 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 88.13 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 88.11 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 88.04 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 87.87 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 87.84 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 87.8 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 87.74 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 87.52 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 87.22 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 87.21 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 87.19 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 87.14 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 86.97 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 86.84 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 86.65 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 86.59 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 86.56 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 86.55 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 86.5 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 86.46 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 86.43 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 86.33 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 86.29 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 86.27 | |
| 3au8_A | 488 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 86.19 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 86.16 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 85.84 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 85.8 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 85.62 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 85.51 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 85.4 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 85.37 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 85.37 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 85.35 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 85.3 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 85.28 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 85.11 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 85.06 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 84.98 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 84.85 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 84.8 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 84.75 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 84.75 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 84.74 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 84.7 |
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-82 Score=625.48 Aligned_cols=330 Identities=45% Similarity=0.699 Sum_probs=304.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
++||||+|||||+|++|+|+|.+|+||.+++..++|++++|+.+.+.+.++.+.+.+++.+.++|+||+|+|++.+++++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a 81 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA 81 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHhcCCCEEEECCChHhHHHHH
Confidence 58999999999999999999999989999999999999999999987777888877777788999999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~ 198 (376)
++++++|++|||+|++||+++++||+|||+|++.++. ..++|||||||||+++++|+||++.++|++++++|+|
T Consensus 82 ~~~~~~G~~vIDlSa~~R~~~~~p~~vpevN~~~i~~------~~~iIanpgC~tt~~~l~l~pL~~~~~i~~i~v~t~~ 155 (366)
T 3pwk_A 82 PYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDA------HNGIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQ 155 (366)
T ss_dssp HHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGTT------CCSEEECCCHHHHHHHHHHHHHHHHHCCSEEEEEEEB
T ss_pred HHHHHCCCEEEEcCCccccCCCceEEEccCCHHHHcC------CCCeEECCCcHHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 9999999999999999999999999999999999973 3789999999999999999999999999999999999
Q ss_pred cccccChHhHHHHHHHhhhhhcC----CCCCccccc-------ccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCC
Q 017153 199 AASGAGAAAMEELELQTREVLEG----KPPTCKIFS-------QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDK 267 (376)
Q Consensus 199 gvSGaGr~~~~~l~~q~~~~~~~----~~~~~~~~~-------~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~ 267 (376)
|+|||||++++++..|+..++++ ++.+...++ .+++||++||+..+.++|++.||+|+++|++|+++..
T Consensus 156 ~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~HrH~~ia~NviP~I~~~~~~g~t~EE~k~~~E~~kil~~~ 235 (366)
T 3pwk_A 156 AVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDD 235 (366)
T ss_dssp CGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBCCSSCBCTTSSBHHHHHHHHHHHHHTTCT
T ss_pred eccccCcchhhHHHHHHHHHhcccccccccCcccCCcccccccchhhccccceecccccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999999999999888776654 222334555 7899999999999899999999999999999999988
Q ss_pred CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCC
Q 017153 268 DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDG 347 (376)
Q Consensus 268 ~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~ 347 (376)
.++|+||||||||+|||++++|++++++++.+|++++|+++|||+|++++..+.+|+|+++.|+|+|+|||+|.|.. .
T Consensus 236 ~~~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~~~l~~~~~V~v~~~~~~~~~P~~~~v~gtn~~~Vgr~r~d~~--~ 313 (366)
T 3pwk_A 236 SIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRIRKDLD--A 313 (366)
T ss_dssp TSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHSTTEEECCBGGGTBCCCHHHHTTCSSEEEEEEEECSS--C
T ss_pred CCCeEEEEEEechhccEEEEEEEEECCCCCHHHHHHHHHhCCCcEEecCcccCCCCchhHcCCCCEEEEEEEEecCC--C
Confidence 89999999999999999999999999999999999999999999999876556689999999999999999997643 3
Q ss_pred CCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 348 NHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 348 ~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++++++|+++|||+||||||||||||+|+
T Consensus 314 ~~~l~~~~~~DNL~KGAAg~AVQn~nlm~ 342 (366)
T 3pwk_A 314 EKGIHMWVVSDNLLKGAAWNSVQIAETLH 342 (366)
T ss_dssp TTEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred CCEEEEEEEEccHHHhHHHHHHHHHHHHH
Confidence 47899999999999999999999999984
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-81 Score=615.88 Aligned_cols=326 Identities=42% Similarity=0.686 Sum_probs=301.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
+||||+|||||+|++|+|+|.+|+||.+++..++|++++|+.+.+.+.++.+++.+++.+.++|+||+|+|++.++++++
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a~ 81 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQAP 81 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHHHHHHH
Confidence 79999999999999999999999999999999999999999999877778888877777899999999999999999999
Q ss_pred HHHhCCCeEEEcCCCCCCCCCCcEEeeccCH-HhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEc
Q 017153 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNP-EAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~-~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~ 198 (376)
++.++|++|||+|++||+++++||+|||+|+ +.++.. +.++|||||||||+++++|+||+++++|++++++|+|
T Consensus 82 ~~~~~G~~vID~Sa~~R~~~~~p~~vpevN~~~~i~~~-----~~~iIanpgC~tt~~~l~l~pL~~~~~i~~i~v~t~~ 156 (344)
T 3tz6_A 82 RFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRR-----PKGIIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQ 156 (344)
T ss_dssp HHHHTTCEEEECSSTTTTCTTSCBCCTTTSHHHHTTCC-----TTSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEB
T ss_pred HHHhCCCEEEECCCccccCCCccEEEccCCCHHHhhhc-----CCCEEECCCcHHHHHHHHHHHHHHhCCCceEEEEecc
Confidence 9999999999999999999999999999999 988731 2479999999999999999999999999999999999
Q ss_pred cccccChHhHHHHHHHhhhh--------hcCCCC---CcccccccccccccccCCCCcCCCc--hHHHHHHHHHHHHHhC
Q 017153 199 AASGAGAAAMEELELQTREV--------LEGKPP---TCKIFSQQYAFNLFSHNAPVLENGY--NEEEMKMVKETRKIWN 265 (376)
Q Consensus 199 gvSGaGr~~~~~l~~q~~~~--------~~~~~~---~~~~~~~~~a~niiph~~~~~e~g~--~~ee~k~~~e~~~il~ 265 (376)
|+||||++++++++.|+..+ +++.+. +++.++++++||++||+..+.++|+ +.||+|+.+|++|+++
T Consensus 157 ~~SGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aynv~p~i~~~~~~ghrHt~EE~k~~~e~~kilg 236 (344)
T 3tz6_A 157 AVSGSGLAGVAELAEQARAVIGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKILG 236 (344)
T ss_dssp CGGGGCHHHHHHHHHHHHHHGGGGGGGGTCTTSSCCCCCSSSSSCCTTCCBCCCSCBCSSSSCCBHHHHHHHHHHHHHHT
T ss_pred CCCccChhhhHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCCCcCCHHHHHHHHHHHHhcC
Confidence 99999999999999998776 555543 3457889999999999999999999 9999999999999998
Q ss_pred CCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCC
Q 017153 266 DKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQ 345 (376)
Q Consensus 266 ~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~ 345 (376)
...++|+||||||||+|||++++|++++++++.+|++++|+++|||+|++ +|+|+++.|+|+|+|||+|.|...
T Consensus 237 ~~~~~v~ft~vrvPv~rGh~~tv~v~l~~~~s~eei~~~l~~~p~V~v~~------~P~p~~v~gtn~~~Vgrir~d~~~ 310 (344)
T 3tz6_A 237 IPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGATGVQLVD------VPTPLAAAGVDESLVGRIRRDPGV 310 (344)
T ss_dssp CTTCEEEEECCBCSCSSCEEEEEEEEESSCCCHHHHHHHHHHCTTEEECS------SCCHHHHTTCSSEEEEEEEECTTS
T ss_pred CCCCceEEEEEEeceeceEEEEEEEEECCCCCHHHHHHHHhcCCCeEEEC------CCChHHhCCCceEEEEEEEecCCC
Confidence 77789999999999999999999999999999999999999999999985 799999999999999999987532
Q ss_pred CCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 346 DGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 346 ~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
++++++++|+++|||+||||||||||||+|+
T Consensus 311 ~~~~~l~~~~~~DNL~KGAAg~AVQ~anll~ 341 (344)
T 3tz6_A 311 PDGRGLALFVSGDNLRKGAALNTIQIAELLT 341 (344)
T ss_dssp GGGCEEEEEEEECTTTTTTHHHHHHHHHHHT
T ss_pred CCCCEEEEEEEEcchhHhHHHHHHHHHHHHH
Confidence 3245999999999999999999999999985
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-79 Score=596.81 Aligned_cols=329 Identities=47% Similarity=0.767 Sum_probs=278.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
++||+|+||||++|++|+|+|.+|+||++++++++++++.|+.+.+.+.++.+.+.+++.|.++|+||+|+|++.+++++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~s~~~a 82 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGELSAKWA 82 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchHHHHHH
Confidence 58999999999999999999999888999999999988999988876667777766666788999999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~ 198 (376)
+.+.++|++|||+|++||+++++||++||+|+++++.. .++++|||||||||+++++|+||+++++|++++++|+|
T Consensus 83 ~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~~----~~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~vtt~~ 158 (336)
T 2r00_A 83 PIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEF----RNRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQ 158 (336)
T ss_dssp HHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGGG----GGTTEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEE
T ss_pred HHHHHcCCEEEEcCCccccCCCCCeEeccCCHHHhccc----cCCcEEECCChHHHHHHHHHHHHHHhCCccEEEEEEEE
Confidence 99999999999999999999999999999999999831 02679999999999999999999999999999999999
Q ss_pred cccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEe
Q 017153 199 AASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRV 278 (376)
Q Consensus 199 gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~V 278 (376)
|+||+|++++++++.|+..+++|.+.++.+++++++||++||++.+.|+|++.||+|+++|++++++..+++++|+|+||
T Consensus 159 ~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~Ee~k~~~e~~kil~~~~~~v~~t~~rV 238 (336)
T 2r00_A 159 SVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIFNDPSIMVNPTCVRV 238 (336)
T ss_dssp ESSSCCTTSCC-----------------------------CCBCTTTCSSCBHHHHHHHHHHHHHTTCTTCEEEEEEEEE
T ss_pred ecccCChhhhHHHHHHHHHhhcCCCCCccccchhhhcCcccccCCcccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEe
Confidence 99999999999988888888877666778888999999999999889999999999999999999998889999999999
Q ss_pred cccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccc-cccCCCceEEEEEEeccCCCCCCeEEEEEEe
Q 017153 279 PVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCG 357 (376)
Q Consensus 279 Pv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~-~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~ 357 (376)
|++|||+.++|++++++++.+|++++|+++|||+|++. +.+|+|+ ++.|+|+|+|||+|.|.. .++++++|+++
T Consensus 239 P~~~g~~~~~~~~l~~~~t~~ei~~~~~~~~~v~v~~~---~~~p~~~~~v~g~~~~~vgr~~~d~~--~~~~l~~~~~~ 313 (336)
T 2r00_A 239 PVFYGHAEAVHVETRAPIDAEQVMDMLEQTDGIELFRG---ADFPTQVRDAGGKDHVLVGRVRNDIS--HHSGINLWVVA 313 (336)
T ss_dssp SSCBSEEEEEEEEESSCCCHHHHHHHHHHSTTEEECCC---CSSGGGCCCCCSSSCEEEEEEEEETT--EEEEEEEEEEE
T ss_pred ccCcEEEEEEEEEeCCCCCHHHHHHHHHhCCCeEEECC---CCCCcCHHHhCCCceEEEEEEEecCC--CCCEEEEEEEe
Confidence 99999999999999999999999999999999999863 2489999 999999999999997642 23799999999
Q ss_pred chHHhhHHHHHHHHHHhcC
Q 017153 358 DQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 358 DNL~kGAAgqAvq~~nl~~ 376 (376)
|||+||||||||||||+|+
T Consensus 314 DNl~kGAAg~Avq~~nl~~ 332 (336)
T 2r00_A 314 DNVRKGAATNAVQIAELLV 332 (336)
T ss_dssp SSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHHHHHHH
Confidence 9999999999999999984
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-80 Score=608.17 Aligned_cols=332 Identities=27% Similarity=0.357 Sum_probs=291.6
Q ss_pred CEEEEECcccHHHHHHHH-HHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeec-CccCCCCCcEEEEcCCCchhhh
Q 017153 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEEL-TEDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr-~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~-~~~~~~~~DvVf~a~~~~~s~~ 116 (376)
|||||+|||||+|++|+| +|.+|+||.+++.+++|++ +|+++. +.+.++.+.+. +++.+.++|+||+|+|++.+++
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~ 79 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEK 79 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCCceEEEecCChhHhccCCEEEECCChHHHHH
Confidence 689999999999999999 9999966689999888876 898865 44445566655 3455789999999999999999
Q ss_pred hHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEE
Q 017153 117 FGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (376)
Q Consensus 117 ~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v 194 (376)
++++++++|+ +|||+|++||+++++||+|||+|+++++..+. ...++|||||||||+++++|+||+++++|+++++
T Consensus 80 ~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~--~~i~~Ianp~C~tt~~~l~L~pL~~~~~I~~i~v 157 (370)
T 3pzr_A 80 VYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIH--HGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSA 157 (370)
T ss_dssp HHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHH--TTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhh--cCCcEEEcCChHHHHHHHHHHHHHHhCCCcEEEE
Confidence 9999999997 89999999999999999999999999973100 0125799999999999999999999999999999
Q ss_pred EEEccccccChHhHHHHHHHhhhhhc-------------------------CCCCCcccccccccccccccCCCCcCCCc
Q 017153 195 STYQAASGAGAAAMEELELQTREVLE-------------------------GKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 195 ~t~~gvSGaGr~~~~~l~~q~~~~~~-------------------------~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+||+||||++++++|..|+..++. ++..+...|+++++||++||+..+.++|+
T Consensus 158 ~t~~avSGAG~~~~~el~~q~~~~~~~~~~~l~~p~~~ild~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g~ 237 (370)
T 3pzr_A 158 MTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQ 237 (370)
T ss_dssp EEEBCGGGTCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSTTSCCTTTSSCCTTSEESCCSCBCTTSC
T ss_pred EeEEeccccChhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccCceeeeccccccCCC
Confidence 99999999999999999999876542 34455678888999999999999889999
Q ss_pred hHHHHHHHHHHHHHhCC--CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC-CCcEEeeCCCC--CCCCc
Q 017153 250 NEEEMKMVKETRKIWND--KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA-PGVVVIDDRAS--NHFPT 324 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~--~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~-~~v~v~~~~~~--~~~p~ 324 (376)
+.||+|+++|++|+++. ..+.|+||||||||+|||++++|++++++++.+|++++|+++ |||+|+++.+. ..+|+
T Consensus 238 t~EE~ki~~E~~kilg~~~~~i~V~~t~vrVPv~rGh~~tv~v~~~~~~~~~ei~~~l~~~~p~V~v~~~~~~~~~~~P~ 317 (370)
T 3pzr_A 238 SKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATHNDWVKVIPNERDITARELT 317 (370)
T ss_dssp BHHHHHHHHHHHHHTTCTTSCCCEECCCCEESCSSEEEEEEEEEESSCCCHHHHHHHHHTSCSSEEECCSCHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHhCccCCCceEEEEeEEecccceEEEEEEEEeCCCCCHHHHHHHHHhCCCCEEEecCCcccccCCCC
Confidence 99999999999999985 578999999999999999999999999999999999999997 89999975311 24899
Q ss_pred cccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 325 PLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 325 ~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|+++.|+|+|+|||+|.|.. .++++.+|+++|||+||||||||||||+|+
T Consensus 318 p~~v~G~n~v~VGrir~d~~--~~~~l~~~~v~DNL~KGAAgqAvQn~Nl~~ 367 (370)
T 3pzr_A 318 PAKVTGTLSVPVGRLRKMAM--GDDFLNAFTVGDQLLWGAAEPLRRTLRIIL 367 (370)
T ss_dssp HHHHTTSCCEEEEEEEEETT--EEEEEEEEEEEETTTTTTHHHHHHHHHHHH
T ss_pred HHHhcCCccEEEEEEEECCC--CCCEEEEEEEehhhhHhHHHHHHHHHHHHH
Confidence 99999999999999997642 237899999999999999999999999984
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-79 Score=607.52 Aligned_cols=333 Identities=28% Similarity=0.389 Sum_probs=292.9
Q ss_pred CCEEEEECcccHHHHHHHH-HHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeec-CccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEEL-TEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr-~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~-~~~~~~~~DvVf~a~~~~~s~ 115 (376)
++||||+|||||+|++|+| +|.+|+||.+++..++|+ ++|+.+. +.+.++.+.+. +++.+.++|+||+|+|++.++
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~~~~v~~~~~~~~~~~vDvvf~a~~~~~s~ 82 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKNETTLKDATSIDDLKKCDVIITCQGGDYTN 82 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCSCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCCceEEEeCCChhHhcCCCEEEECCChHHHH
Confidence 5899999999999999999 999996668999988886 7898765 44445556655 345578999999999999999
Q ss_pred hhHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 116 KFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 116 ~~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
+++++++++|+ +|||+|++||+++++||+|||+|+++++..+. ...++|||||||||+++++|+||+++++|++++
T Consensus 83 ~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~--~~i~~Ianp~C~tt~~~l~L~pL~~~~~I~~i~ 160 (377)
T 3uw3_A 83 DVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALV--NGTKNFIGGNCTVSLMLMALGGLFRENLVDWMT 160 (377)
T ss_dssp HHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHH--TTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhh--cCCcEEEcCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999997 89999999999999999999999999973100 012469999999999999999999999999999
Q ss_pred EEEEccccccChHhHHHHHHHhhhhhc-------------------------CCCCCcccccccccccccccCCCCcCCC
Q 017153 194 VSTYQAASGAGAAAMEELELQTREVLE-------------------------GKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 194 v~t~~gvSGaGr~~~~~l~~q~~~~~~-------------------------~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
++|+||+||||++++++|..|+..++. +++.+...|+++++||++||+..+.++|
T Consensus 161 v~t~~avSGAG~~~~~el~~q~~~l~~~~~~~~~~p~~~ild~~~~~~~~~~~~~~~~~~f~~~ia~N~~P~i~~~~~~g 240 (377)
T 3uw3_A 161 AMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPASAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNG 240 (377)
T ss_dssp EEEEBCGGGTCHHHHHHHHHHHHHHHHTTHHHHTCTTSCHHHHHHHHHHHHHSTTSCCTTTSSCCTBSCBSCCSCBCSSS
T ss_pred EeeeecccccchhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccCceEEeecccccCC
Confidence 999999999999999999999876543 2345567888999999999999988999
Q ss_pred chHHHHHHHHHHHHHhCCC------CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC-CCcEEeeCCCC--
Q 017153 249 YNEEEMKMVKETRKIWNDK------DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA-PGVVVIDDRAS-- 319 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~------~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~-~~v~v~~~~~~-- 319 (376)
++.||+|+++|++|+++.. .+.|+||||||||+|||++++|++++++++.+|++++|+++ |||+|+++.++
T Consensus 241 ~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t~vrVPv~rGh~~tv~v~~~~~~~~eei~~~l~~~~p~V~v~~~~~~~~ 320 (377)
T 3uw3_A 241 MSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKDVPLDEINGILASANDWVKVVPNEREAS 320 (377)
T ss_dssp CBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEECCBCSBSSEEEEEEEEEESSCCCHHHHHHHHHTSCSSEEECCSSHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccCCCceEEEEeEEecccceEEEEEEEEeCCCCCHHHHHHHHHhCCCCEEEecCCcccc
Confidence 9999999999999999863 68999999999999999999999999999999999999997 89999975311
Q ss_pred CCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 320 NHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 320 ~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
..+|+|+++.|+|+|+|||+|.|.. .++++++|+++|||+||||||||||||+|+
T Consensus 321 ~~~P~p~~v~G~n~v~VGrir~d~~--~~~~l~~~~v~DNL~KGAAgqAvqn~nl~~ 375 (377)
T 3uw3_A 321 MRDLSPAKVTGTLSVPVGRLRKLAM--GGEYLSAFTVGDQLLWGAAEPLRRMLRILL 375 (377)
T ss_dssp HHHSSHHHHTTSSCEEEEEEEECTT--CTTEEEEEEEEETTCCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHhcCCCcEEEEEEEECCC--CCCEEEEEEEehhhhHhHHHHHHHHHHHHh
Confidence 2489999999999999999998743 348999999999999999999999999984
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-77 Score=587.70 Aligned_cols=328 Identities=51% Similarity=0.787 Sum_probs=301.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
|||+|+||||++|++|+|+|.+++||.+++..+.+.++.|+.+...+.++.+.+.+++.| ++|+||+|+|++.++++++
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~~-~~DvV~~a~g~~~s~~~a~ 79 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL-PVDLVLASAGGGISRAKAL 79 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSCC-CCSEEEECSHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhhc-CCCEEEECCCccchHHHHH
Confidence 589999999999999999999666799999888888888888877666777766566668 9999999999999999999
Q ss_pred HHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEcc
Q 017153 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQA 199 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~g 199 (376)
.++++|++|||+|++||+++++||++||+|+++++. ..++|||||||||+++++|+||+++++|++++++|+||
T Consensus 80 ~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~------~~~iIanp~C~tt~~~~~l~pL~~~~~I~~~~vtt~~~ 153 (331)
T 2yv3_A 80 VWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQ------HRGIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQA 153 (331)
T ss_dssp HHHHTTCEEEECSSSSTTCTTSCBCCTTSCGGGGGG------CSSEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEBC
T ss_pred HHHHCCCEEEECCCccccCCCCCEEEcCcCHHHhcC------CCCEEECCCHHHHHHHHHHHHHHHhCCceEEEEEEEee
Confidence 999999999999999999999999999999999983 26799999999999999999999999999999999999
Q ss_pred ccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEec
Q 017153 200 ASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVP 279 (376)
Q Consensus 200 vSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VP 279 (376)
+||+|++++++++.|+..++.+...++.+++++++||++||++.+.+++++.||+++++|+.++++.++++++|+|+|||
T Consensus 154 ~SgaG~~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiP~~~~~~~~~ht~e~~~i~~e~~kil~~~~l~v~~~~~rVP 233 (331)
T 2yv3_A 154 ASGAGAKAMEELLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVWETHKIFGDDTIRISATAVRVP 233 (331)
T ss_dssp GGGGCHHHHHHHHHHHHHHHTSSCCCCCSSSSCCTTCCBSCCSCBCTTSCBHHHHHHHHHHHHHTTCTTCEEEEECCBCS
T ss_pred cccCCcchhHHHHHHHHhhhcCccccccccchhhhcCcccccCccccCCCcHHHHHHHHHHHHHhCCCCceEEEEEEEec
Confidence 99999999999999988888765556778889999999999988889999999999999999999767788999999999
Q ss_pred ccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEech
Q 017153 280 VMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQ 359 (376)
Q Consensus 280 v~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DN 359 (376)
++|||+.++|++++++++.+|++++|+++|||+|+++++.+.+|+|+++.|+|+|+|||++.|.. .++++++|+++||
T Consensus 234 ~~~g~~~~~~~~l~~~~t~eei~~~~~~~~~v~v~~~~~~~~~p~~~~~~g~~~~~igr~~~d~~--~~~~l~~~~~~DN 311 (331)
T 2yv3_A 234 TLRAHAEAVSVEFARPVTPEAAREVLKEAPGVEVVDEPEAKRYPMPLTASGKWDVEVGRIRKSLA--FENGLDFFVVGDQ 311 (331)
T ss_dssp CSSEEEEEEEEEESSCCCHHHHHHHHTTSTTCCBCCBTTTTBCCCHHHHTTCSSEEEEEEEECSS--STTEEEEEEEEET
T ss_pred cCceEEEEEEEEECCCCCHHHHHHHHHcCCCeEEEeCCCcCCCCChhhccCCceEEEEEEEECCC--CCCEEEEEEEech
Confidence 99999999999999999999999999999999999876556799999999999999999998743 3489999999999
Q ss_pred HHhhHHHHHHHHHHhcC
Q 017153 360 VRKGAALNAVQIAEMLL 376 (376)
Q Consensus 360 L~kGAAgqAvq~~nl~~ 376 (376)
|+||||||||||||+|+
T Consensus 312 l~kGAAg~AVq~~nl~~ 328 (331)
T 2yv3_A 312 LLKGAALNAVQIAEEWL 328 (331)
T ss_dssp THHHHTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999985
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-75 Score=573.64 Aligned_cols=328 Identities=29% Similarity=0.496 Sum_probs=298.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
++||+|+||||++|++|+|+|.+++||.+++++++++++.|+.+.+.+.++.+.+.+++.|.++|+||+|+|++.+++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~~~~~DvV~~a~g~~~s~~~a 85 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHA 85 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHHhcCCCEEEEcCCcHHHHHHH
Confidence 57999999999999999999996667999999999988899877765555655555556688999999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~ 198 (376)
+.+.++|++|||+|++|| ++++||++||+|+++++.. .+.++|||||||||+++++|+||+++++|++++++|+|
T Consensus 86 ~~~~~aG~kvId~Sa~~r-d~~~~~~vpevN~~~i~~~----~~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~v~t~~ 160 (340)
T 2hjs_A 86 ERARAAGCSVIDLSGALE-PSVAPPVMVSVNAERLASQ----AAPFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACL 160 (340)
T ss_dssp HHHHHTTCEEEETTCTTT-TTTSCBCCHHHHGGGGGGS----CSSCEEECCCHHHHHHHHHHHHHTTTCCEEEEEEEEEE
T ss_pred HHHHHCCCEEEEeCCCCC-CCCCCeEEcCcCHHHHhcC----cCCCEEEcCCHHHHHHHHHHHHHHHhcCcceEEEEEec
Confidence 999999999999999999 7789999999999999831 01279999999999999999999999999999999999
Q ss_pred cccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEe
Q 017153 199 AASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRV 278 (376)
Q Consensus 199 gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~V 278 (376)
|+||+|++++++++.|++.++.|++.++..|+++++||++||...+.++|++.||+|+++|++|+++..+++++|+|+||
T Consensus 161 ~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~Ee~k~~~~~~kil~~~~~~v~~~~~rV 240 (340)
T 2hjs_A 161 SVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQA 240 (340)
T ss_dssp CGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSCBHHHHHHHHHHHHHTGGGBCCEEEEEEEC
T ss_pred ccCCCCccccHhHHHHHHHHhccCCccccccchhhccCeeccccCcccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEc
Confidence 99999999999999998888888777788888999999999998777899999999999999999998888999999999
Q ss_pred cccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccc-cccCCCceEEEEEEeccCCCCCCeEEEEEEe
Q 017153 279 PVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCG 357 (376)
Q Consensus 279 Pv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~-~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~ 357 (376)
|++|||+.++|++++++++.+|++++|+++|||+|++. +.+|+|+ ++.|+|+|+|||+|.|.. .++++++|+++
T Consensus 241 P~~~g~~~~~~~~l~~~~t~eei~~~~~~~~~V~v~~~---~~~p~~~~~v~g~~~~~vgr~r~~~~--~~~~l~~~~~~ 315 (340)
T 2hjs_A 241 PVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGE---GDYPTVVGDALGQDETYVGRVRAGQA--DPCQVNLWIVS 315 (340)
T ss_dssp SCSSCEEEEEEEEESSCCCHHHHHHHHHHSTTEEECCT---TCCCCCCCCCTTSSCEEEEEEEECSS--CTTEEEEEEEE
T ss_pred CcCceEEEEEEEEECCCCCHHHHHHHHhcCCCcEEeCC---CCCCccHHHcCCCCEEEEEEEEecCC--CCCEEEEEEEe
Confidence 99999999999999999999999999999999999863 2489999 999999999999998743 34899999999
Q ss_pred chHHhhHHHHHHHHHHhcC
Q 017153 358 DQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 358 DNL~kGAAgqAvq~~nl~~ 376 (376)
|||+||||+|||||||+|+
T Consensus 316 DNl~kGAA~~avq~~~l~~ 334 (340)
T 2hjs_A 316 DNVRKGAALNAVLLGELLI 334 (340)
T ss_dssp CCCCCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-73 Score=560.38 Aligned_cols=294 Identities=22% Similarity=0.329 Sum_probs=259.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-----cCcceEEeecCccCC-CCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-----QDKAYTVEELTEDSF-DGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-----~~~~~~v~~~~~~~~-~~~DvVf~a~~~~ 112 (376)
++||||+|||||+|++|+|+|.+| |.+++..++|++++|+.+.. . .++.+++.+++++ .++|+||+|+|++
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h--P~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~~~Dvvf~alp~~ 89 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKNCDVLFTALPAG 89 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC--TTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHHCSEEEECCSTT
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC--CCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhcCCCEEEECCCcH
Confidence 589999999999999999999998 99999999999999998873 3 4566666665555 7899999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCCCCC-CC-----------------cEEeeccCHHhhcCcccCCCCCcEEEcCCchHH
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFRMVE-NV-----------------PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTI 174 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R~~~-~~-----------------~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~t 174 (376)
+|+++++++ +|++|||+|++||+++ ++ +|+|||+|+++|+ ++++|||||||+|
T Consensus 90 ~s~~~~~~~--~g~~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~e~i~-------~a~iIANPgC~~t 160 (351)
T 1vkn_A 90 ASYDLVREL--KGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIK-------NAQVVGNPGCYPT 160 (351)
T ss_dssp HHHHHHTTC--CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHT-------TCSEEECCCHHHH
T ss_pred HHHHHHHHh--CCCEEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCHHHhc-------cCCEEeCCChHHH
Confidence 999999998 8999999999999986 42 8999999999998 5789999999999
Q ss_pred HHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHH
Q 017153 175 ICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE 252 (376)
Q Consensus 175 a~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~e 252 (376)
+++++|+||+++++|+ +++|+|+||+|||||++++++ ++ .+..++..+|++.+|+|. +| +.
T Consensus 161 ~~~laL~PL~~~~~i~~~~iiv~t~sgvSGAG~~~~~~~-------~~-----~e~~~n~~~y~~~~h~h~-pE---i~- 223 (351)
T 1vkn_A 161 SVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDY-------LF-----SEVNESLRPYNVAKHRHV-PE---ME- 223 (351)
T ss_dssp HHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGG-------BH-----HHHTTCCEECSCSCCTHH-HH---HH-
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEEEeeccccCccccccc-------ch-----hHHhcccccCCccccccH-HH---HH-
Confidence 9999999999999998 999999999999999988753 21 234455678999999998 65 44
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCCccccc
Q 017153 253 EMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFPTPLEV 328 (376)
Q Consensus 253 e~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p~~~~v 328 (376)
+|++++++ ..++|+||||||||+|||++++|++++ ++.+|++++|++ +|||+|++. +.+|+|+++
T Consensus 224 -----~el~~i~~-~~~~v~ftp~rvPv~rG~~~tv~v~l~--~~~eei~~~l~~~Y~~~pfV~v~~~---~~~P~~~~v 292 (351)
T 1vkn_A 224 -----QELGKISG-KKVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFYKNEPFVHVLPM---GIYPSTKWC 292 (351)
T ss_dssp -----HHHHHHHT-SCCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHHTTCTTEEECCT---TCCCCGGGG
T ss_pred -----HHHHHhhC-CCCCEEEEEEEeccccEEEEEEEEEEc--CCHHHHHHHHHHhhCCCCCEEEeCC---CCCcChHHh
Confidence 45678887 568999999999999999999999998 899999999995 799999864 358999999
Q ss_pred cCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 329 SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 329 ~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
.|+|+|+|| ++.|. .++++++|+++|||+||||||||||||+|+
T Consensus 293 ~gtn~~~Ig-~~~d~---~~~~l~~~s~~DNL~KGAAgqAVQn~nlm~ 336 (351)
T 1vkn_A 293 YGSNHVFIG-MQMEE---RTNTLILMSAIDNLVKGASGQAVQNMNIMF 336 (351)
T ss_dssp TTSSCEEEE-EEEET---TTTEEEEEEEECTTTTTTHHHHHHHHHHHT
T ss_pred cCCceEEEE-EEEcC---CCCEEEEEEEcccHHHhHHHHHHHHHHHHh
Confidence 999999999 67663 358999999999999999999999999985
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-71 Score=545.97 Aligned_cols=302 Identities=24% Similarity=0.360 Sum_probs=262.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec------------CcceEEeecCccCCCCCcEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ------------DKAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~------------~~~~~v~~~~~~~~~~~DvV 105 (376)
+++||||+|||||+|++|+|+|.+| |++++..++|++++|+.+.+. ..++.+.+.+++.+.++|+|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~h--P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvv 83 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNH--PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDII 83 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTC--SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC--CCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEE
Confidence 3689999999999999999999987 999999999999999987642 13566666677778899999
Q ss_pred EEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCccc----CCCCCcEEEcCCchHHHHHHHHh
Q 017153 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV----GMGKGALIANPNCSTIICLMAAT 181 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~----~~~~~~iVa~PgC~~ta~~l~L~ 181 (376)
|+|+|++.+++++++++++|++|||+|++||+++++||++||+|+++++.++. ..+++++|||||||||+++++|+
T Consensus 84 f~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~~l~L~ 163 (359)
T 4dpl_A 84 FSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLG 163 (359)
T ss_dssp EECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999853211 01235799999999999999999
Q ss_pred HHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHH
Q 017153 182 PLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261 (376)
Q Consensus 182 pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~ 261 (376)
||+++++|++++++|+||+||+|+.++.+ ..+++|++|+..+ +|.|.+.|++
T Consensus 164 PL~~~~gi~~v~v~t~~g~SGaG~~~~~~--------------------~~~~~N~ipy~~~--------~e~k~~~Ei~ 215 (359)
T 4dpl_A 164 AIFKDYKMDGAFITTIQSLSGAGYPGIPS--------------------LDVVDNILPLGDG--------YDAKTIKEIF 215 (359)
T ss_dssp HHHHHSCEEEEEEEEEBCGGGGCSSCSBH--------------------HHHTTCCEECCHH--------HHHHHHHHHH
T ss_pred HHHHhcCCcEEEEEEEeccccCCCcCccC--------------------hHHhCCeEeecCc--------HHHHHHHHHH
Confidence 99999999999999999999999985532 1357899999754 6788999999
Q ss_pred HHhCCC----------CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh--------------CCCcEEeeCC
Q 017153 262 KIWNDK----------DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN--------------APGVVVIDDR 317 (376)
Q Consensus 262 ~il~~~----------~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~--------------~~~v~v~~~~ 317 (376)
++|+.. .++++|||||||++|||++++|++++++++.+|++++|++ +|||+|+++.
T Consensus 216 kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~~fV~v~~~~ 295 (359)
T 4dpl_A 216 RILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNED 295 (359)
T ss_dssp HHHTTSCCSSCCSCGGGCEEEEECEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEEECST
T ss_pred HHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCCCCccEEEcCCC
Confidence 999853 3589999999999999999999999999999999999997 4788998653
Q ss_pred CCCCCCccccccCCC-----ceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 318 ASNHFPTPLEVSNKD-----DVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 318 ~~~~~p~~~~v~g~~-----~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
.+|+|+.+.|+| .|+|||+|.+ ..+++.+|+++|||+||||||||||||+|+
T Consensus 296 ---~~P~~~~~~g~~~~~~~~~~Vgr~r~~----~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~ 352 (359)
T 4dpl_A 296 ---TRPQVYFDRWAGDIPGMSVVVGRLKQV----NKRMIRLVSLIHNTVRGAAGGGILAAELLV 352 (359)
T ss_dssp ---TCCCHHHHTTCTTTTTCSEEEEEEEEE----ETTEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred ---CCCCHHHhhccCCCcCCeEEEEEEEEc----CCCEEEEEEEEhhhhHhHHHHHHHHHHHHH
Confidence 589999887665 4999999943 137899999999999999999999999984
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-71 Score=545.97 Aligned_cols=302 Identities=24% Similarity=0.360 Sum_probs=261.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec------------CcceEEeecCccCCCCCcEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ------------DKAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~------------~~~~~v~~~~~~~~~~~DvV 105 (376)
+++||||+|||||+|++|+|+|.+| |++++..++|++++|+.+.+. ..++.+.+.+++.+.++|+|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~h--P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~~vDvv 83 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNH--PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMDDVDII 83 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTC--SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCTTCCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC--CCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhcCCCEE
Confidence 3689999999999999999999987 999999999999999987642 13566666677778899999
Q ss_pred EEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCccc----CCCCCcEEEcCCchHHHHHHHHh
Q 017153 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV----GMGKGALIANPNCSTIICLMAAT 181 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~----~~~~~~iVa~PgC~~ta~~l~L~ 181 (376)
|+|+|++.+++++++++++|++|||+|++||+++++||++||+|+++++.++. ..+++++|||||||||+++++|+
T Consensus 84 f~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~~~l~L~ 163 (359)
T 4dpk_A 84 FSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQGAAIPLG 163 (359)
T ss_dssp EECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999853211 01235799999999999999999
Q ss_pred HHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHH
Q 017153 182 PLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261 (376)
Q Consensus 182 pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~ 261 (376)
||+++++|++++++|+||+||+|+.++.+ ..+++|++|+..+ +|.|.+.|++
T Consensus 164 PL~~~~gi~~v~v~t~~g~SGaG~~~~~~--------------------~~~~~N~ipy~~~--------~e~k~~~Ei~ 215 (359)
T 4dpk_A 164 AIFKDYKMDGAFITTIQSLSGAGYPGIPS--------------------LDVVDNILPLGDG--------YDAKTIKEIF 215 (359)
T ss_dssp HHHHHSCEEEEEEEEEECSGGGCSSCSBG--------------------GGTTTCCEECCHH--------HHHHHHHHHH
T ss_pred HHHHhcCCcEEEEEEEeccccCCCcCccC--------------------hHHhCCeEeecCc--------HHHHHHHHHH
Confidence 99999999999999999999999985421 1357899999754 6788999999
Q ss_pred HHhCCC----------CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh--------------CCCcEEeeCC
Q 017153 262 KIWNDK----------DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN--------------APGVVVIDDR 317 (376)
Q Consensus 262 ~il~~~----------~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~--------------~~~v~v~~~~ 317 (376)
++|+.. .++++|||||||++|||++++|++++++++.+|++++|++ +|||+|+++.
T Consensus 216 kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~~fV~v~~~~ 295 (359)
T 4dpk_A 216 RILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMNED 295 (359)
T ss_dssp HHHHTSCCSCCCSCGGGCEEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEECCST
T ss_pred HHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCCCCccEEEcCCC
Confidence 999853 3589999999999999999999999999999999999997 4688988653
Q ss_pred CCCCCCccccccCCC-----ceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 318 ASNHFPTPLEVSNKD-----DVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 318 ~~~~~p~~~~v~g~~-----~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
.+|+|+.+.|+| .|+|||+|.+ ..+++.+|+++|||+||||||||||||+|+
T Consensus 296 ---~~P~~~~~~g~~~~~~~~~~Vgr~r~~----~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~ 352 (359)
T 4dpk_A 296 ---TRPQVYFDRWAGDIPGMSVVVGRLKQV----NKRMIRLVSLIHNTVRGAAGGGILAAELLV 352 (359)
T ss_dssp ---TCCCHHHHTTCTTTTTCSEEEEEEEEE----ETTEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred ---CCCCHHHhhccCCCcCCeEEEEEEEEc----CCCEEEEEEEEhhhhHhHHHHHHHHHHHHH
Confidence 589999887665 4999999943 137899999999999999999999999984
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-71 Score=545.71 Aligned_cols=330 Identities=26% Similarity=0.381 Sum_probs=290.0
Q ss_pred CEEEEECcccHHHHHHHH-HHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecC-ccCCCCCcEEEEcCCCchhhh
Q 017153 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr-~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~s~~ 116 (376)
+||||+|||||+|++|+| +|.+|+||.+++..+.++ +.|+.+. +.+.++.+.+.+ ++.|.++|+||+|+|++.+++
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~~~g~~i~~~~~~~~~~~~~~DvVf~a~g~~~s~~ 80 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNE 80 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccccCCCceEEEecCChHHhcCCCEEEECCCchhHHH
Confidence 799999999999999999 788887788999888876 5898775 334566666553 455789999999999999999
Q ss_pred hHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCC-cEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 117 FGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 117 ~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~-~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
+++.+.++|+ +|||+|++||+++++||++||+|+++++... ... ++|+|||||||+++++|+||++.++|++++
T Consensus 81 ~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~~~---~~g~~~Ianp~Cttt~~~~al~pL~~~~~I~~~~ 157 (367)
T 1t4b_A 81 IYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGL---NNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVS 157 (367)
T ss_dssp HHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHH---HTTCCEEEECCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhhhh---hcCCCEEEeCCHHHHHHHHHHHHHHHcCCCcEEE
Confidence 9999999998 8999999999999999999999999998310 012 699999999999999999999999999999
Q ss_pred EEEEccccccChHhHHHHHHHhhhh-------------------------hcCCCCCcccccccccccccccCCCCcCCC
Q 017153 194 VSTYQAASGAGAAAMEELELQTREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 194 v~t~~gvSGaGr~~~~~l~~q~~~~-------------------------~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
++||||+||+|++++++|.+|+..+ +++++.++..|++.+++|++||+.++.++|
T Consensus 158 vtt~~a~SGaG~~~~~el~~~~~~l~~~~~~~~~~~~~~ild~~r~~~~~~~~~~~~~~~f~~~~a~NiiP~~~~~~~~~ 237 (367)
T 1t4b_A 158 VATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNG 237 (367)
T ss_dssp EEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHTCSCCTTTSSCCTTCEESCCSCBCTTS
T ss_pred EEEEeccccccccchHHHHHHHhhhhccccccccccccchhhhhhccccccccccCcccccchhhhCceEEEecCccccC
Confidence 9999999999999999998887653 233445567778889999999999888999
Q ss_pred chHHHHHHHHHHHHHhCC-CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh-CCCcEEeeCCCC--CCCCc
Q 017153 249 YNEEEMKMVKETRKIWND-KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN-APGVVVIDDRAS--NHFPT 324 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~-~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~-~~~v~v~~~~~~--~~~p~ 324 (376)
++.||+|+++|++|+++. +.++|+|+|+|||++|||+.++|++++++++.+|++++|++ +|||+|++++.+ +.+|+
T Consensus 238 ~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~eei~~~l~~~~~~V~v~~~~~~~~~~~p~ 317 (367)
T 1t4b_A 238 QSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELT 317 (367)
T ss_dssp CBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHHHHHHHHHHCTTCCBCCSCHHHHHHHSS
T ss_pred ccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCHHHHHHHHHhcCCCEEEecCCcccccCCCc
Confidence 999999999999999987 77899999999999999999999999999999999999997 599999875311 24899
Q ss_pred cccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 325 PLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 325 ~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
|+++.|+|+|+|||+|.|.. .++++++|+++|||+||||||.-..++++
T Consensus 318 ~~~v~g~~~~~Vgrir~d~~--~~~~l~~~~~~DNL~kGAAg~~~~~~~~~ 366 (367)
T 1t4b_A 318 PAAVTGTLTTPVGRLRKLNM--GPEFLSAFTVGDQLLWGAAEPLRRMLRQL 366 (367)
T ss_dssp HHHHTTSSCCCEEEEEECTT--CTTEEEEEEEEETTCCCCCHHHHHHHHHH
T ss_pred ceeeCCCCeEEEEEEEEcCC--CCCEEEEEEEccchhhchhHHHHHHHHhh
Confidence 99999999999999998743 34899999999999999999999988876
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=541.60 Aligned_cols=296 Identities=23% Similarity=0.340 Sum_probs=258.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-----CeEEEEEecCCCCCceeee-----cC-cceEEeecCccCCCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-----YRSIKMLASKRSAGKQLSF-----QD-KAYTVEELTEDSFDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-----~~~l~~v~s~~~~g~~~~~-----~~-~~~~v~~~~~~~~~~~DvVf~ 107 (376)
++||+|+||||++|++|+|+|.+| | .+++++++++++.|+.+.. .+ .++.+.+.+++.|.++|+||+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~--~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~ 86 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGH--PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFL 86 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC--HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC--CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEE
Confidence 489999999999999999999988 6 8999999998888887653 11 244555555556779999999
Q ss_pred cCCCchhhhhHHHHHhCCCeEEEcCCCCCCCC-C-------------CcEEeecc--CHHhhcCcccCCCCCcEEEcCCc
Q 017153 108 SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE-N-------------VPLVIPEV--NPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~-~-------------~~~~lpev--N~~~i~~~~~~~~~~~iVa~PgC 171 (376)
|+|++.++++++.+ ++|++|||+|++||+++ + ++|+|||+ |+++|+ ++++||||||
T Consensus 87 alg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~~n~~~i~-------~~~iIanPgC 158 (352)
T 2nqt_A 87 ALPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLR-------GTRRIAVPGC 158 (352)
T ss_dssp CCTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTSTTHHHHHT-------TCSEEECCCH
T ss_pred CCCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccccCHHHHh-------cCCEEEcCCH
Confidence 99999999999999 99999999999999987 4 49999999 999998 5789999999
Q ss_pred hHHHHHHHHhHHHHhCCCc-EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccc-cCCCCcCCCc
Q 017153 172 STIICLMAATPLHRRAKVT-RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS-HNAPVLENGY 249 (376)
Q Consensus 172 ~~ta~~l~L~pL~~~~~i~-~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niip-h~~~~~e~g~ 249 (376)
|||+++++|+||+++++|+ +++++|+||+||+|+++++. .|+ +++.++..+||++| |+|. ||
T Consensus 159 ~tt~~~lal~PL~~~~~i~~~i~v~t~~g~SGaG~~~~~~-------~~~-----~~~~~~~~ay~~~~~h~h~-pE--- 222 (352)
T 2nqt_A 159 YPTAALLALFPALAADLIEPAVTVVAVSGTSGAGRAATTD-------LLG-----AEVIGSARAYNIAGVHRHT-PE--- 222 (352)
T ss_dssp HHHHHHHHHHHHHHTTCSCSEEEEEEEECGGGGCSSCCGG-------GSH-----HHHTTCCEECSTTTTSTTH-HH---
T ss_pred HHHHHHHHHHHHHHcCCCcceEEEEEEeccccCCcccccc-------ccH-----HHHhhhcccccCCCcceec-HH---
Confidence 9999999999999999998 99999999999999999873 121 34555678999999 9997 65
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCCcc
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFPTP 325 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p~~ 325 (376)
+++|++|+++ .+++++|||||||++|||++++|++++++ .+|++++|++ +|||+|+++ +.+|+|
T Consensus 223 ------i~~e~~ki~~-~~~~v~ft~~rvP~~rG~~~ti~~~l~~~--~~ei~~~~~~~y~~~~~V~v~~~---~~~p~~ 290 (352)
T 2nqt_A 223 ------IAQGLRAVTD-RDVSVSFTPVLIPASRGILATCTARTRSP--LSQLRAAYEKAYHAEPFIYLMPE---GQLPRT 290 (352)
T ss_dssp ------HHHHHHTTCS-SCCEEEEEEEECSCSSCEEEEEEEECCSC--HHHHHHHHHHHHTTCTTEEECCT---TCCCCG
T ss_pred ------HHHHHHHHhC-CCCCEEEEEEEEccccEEEEEEEEEECCC--HHHHHHHHHHhhCCCCCEEEeCC---CCCcCh
Confidence 3456788887 57899999999999999999999999877 8999999986 699999864 358999
Q ss_pred ccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 326 LEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 326 ~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+++.|+|+|+|| ++.|. .++++++|+++|||+||||||||||||+|+
T Consensus 291 ~~v~g~n~~~ig-~~~d~---~~~~l~~~~~~DNL~KGAAg~AVQ~~nl~~ 337 (352)
T 2nqt_A 291 GAVIGSNAAHIA-VAVDE---DAQTFVAIAAIDNLVKGTAGAAVQSMNLAL 337 (352)
T ss_dssp GGTTTSSCEEEE-EEEET---TTTEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred HHhcCCcEEEEE-EEEeC---CCCEEEEEEEEcchhHhHHHHHHHHHHHHh
Confidence 999999999999 66553 458999999999999999999999999984
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=530.34 Aligned_cols=302 Identities=32% Similarity=0.467 Sum_probs=256.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE-ecCCCCCceeeec------------CcceEEeecCcc-CCCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ------------DKAYTVEELTED-SFDGVD 103 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v-~s~~~~g~~~~~~------------~~~~~v~~~~~~-~~~~~D 103 (376)
+++||||+|||||+|++|+|+|.+| |++++..+ +|++++|+.+... ..++.+.+.+++ .+.++|
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~h--p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~D 95 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKH--PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECD 95 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTC--SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCS
T ss_pred CccEEEEECCCChHHHHHHHHHHcC--CCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCC
Confidence 4689999999999999999999998 99999877 5888999987521 135666776666 678999
Q ss_pred EEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCccc---------CCCCCcEEEcCCchHH
Q 017153 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---------GMGKGALIANPNCSTI 174 (376)
Q Consensus 104 vVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~---------~~~~~~iVa~PgC~~t 174 (376)
+||+|+|+++++++++++.++|++|||+|++||+++++|+++||+|++.+...+. +-.++++|||||||||
T Consensus 96 vvf~alp~~~s~~~~~~~~~~G~~VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~~~~~~i~~~~iIaNPgC~tt 175 (381)
T 3hsk_A 96 VVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTA 175 (381)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHHHHTTCCCCCEEEEECCHHHH
T ss_pred EEEECCChhHHHHHHHHHHhCCCEEEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhhcccccccCCcEEECCCcHHH
Confidence 9999999999999999999999999999999999999999999999887641100 0125789999999999
Q ss_pred HHHHHHhHHHHhCC-CcEEEEEEEccccccChH-hHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHH
Q 017153 175 ICLMAATPLHRRAK-VTRMVVSTYQAASGAGAA-AMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE 252 (376)
Q Consensus 175 a~~l~L~pL~~~~~-i~~v~v~t~~gvSGaGr~-~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~e 252 (376)
+++++|+||+++++ |++++|+|+||+||||++ ++++ ..+++|++|+..+ +
T Consensus 176 ~~~laL~PL~~~~glI~~v~v~t~~gvSGAG~~~~~~~--------------------~~~~~N~~Py~~~--------~ 227 (381)
T 3hsk_A 176 GLVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPGVSG--------------------MDILDNIVPYISG--------E 227 (381)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEEEBCCCC------CCH--------------------HHHTTCCBCCCTT--------H
T ss_pred HHHHHHHHHHHhcCCceEEEEEEeeccCCCCccCCcch--------------------hhhhcChhhcccc--------h
Confidence 99999999999867 899999999999999994 4432 1357899999865 6
Q ss_pred HHHHHHHHHHHhCC-------------CCCcEEEEEEEecccceeEeeEEEEeCC--CCCHHHHHHHHHhC---------
Q 017153 253 EMKMVKETRKIWND-------------KDVRVTATCIRVPVMRAHAESVNLQFEK--PLDEDTARDILKNA--------- 308 (376)
Q Consensus 253 e~k~~~e~~~il~~-------------~~~~v~~t~~~VPv~rG~~~ti~v~l~~--~~s~~ei~~~~~~~--------- 308 (376)
|.|.+.|++++|+. ..++|+|||+||||+|||++++|+++++ +++.+|++++|+++
T Consensus 228 e~k~~~Ei~kiL~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~~~~~t~eei~~~l~~~y~~~~~~~l 307 (381)
T 3hsk_A 228 EDKLEWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLREYECAASKLGC 307 (381)
T ss_dssp HHHHHHHHHHHTCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESSSSCCCHHHHHHHHHHCBCHHHHTTC
T ss_pred HHHHHHHHHHHhhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCCCCCCCHHHHHHHHHHhhcccccccc
Confidence 78999999999984 3458999999999999999999999998 89999999999984
Q ss_pred -----CCcEEeeCCCCCCCCccc---cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 309 -----PGVVVIDDRASNHFPTPL---EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 309 -----~~v~v~~~~~~~~~p~~~---~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|||+|+++. .+|+|+ ++.|++.|+|||+|.|.. ..+.+|+++|||+||||||||||||+|+
T Consensus 308 ~~~p~~~V~v~~~~---~~P~p~~~~~~~~~~~v~Vgrir~d~~----~~~~~~~v~DNl~kGAAg~AVq~aell~ 376 (381)
T 3hsk_A 308 HSAPKQTIHVLDQP---DRPQPRLDRDRDSGYGVSVGRIREDSL----LDFKMVVLSHNTIIGAAGAGILIAEILK 376 (381)
T ss_dssp TTCCSBSEEEECST---TCCCHHHHTTTTTTSSEEEEEEEECSS----SSEEEEEEECHHHHSHHHHHHHHHHHHH
T ss_pred ccCCCCcEEEeCCC---CCCceeecccccCCceEEEEEEEeCCC----CCeEEEEEeCcHHHhHHHHHHHHHHHHH
Confidence 599999753 479998 778999999999997632 4699999999999999999999999974
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=528.45 Aligned_cols=299 Identities=20% Similarity=0.299 Sum_probs=257.3
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-----cC---cceEEeecCccCCCCCcEEEE
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-----QD---KAYTVEELTEDSFDGVDIALF 107 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-----~~---~~~~v~~~~~~~~~~~DvVf~ 107 (376)
.|+++||+|+||||++|++++|+|.+| |++++++++++++.|+.+.. .+ .++.+.+ .+.|.++|+||+
T Consensus 13 ~M~~~kV~IiGAtG~iG~~llr~L~~~--p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDvVf~ 88 (359)
T 1xyg_A 13 PEKDIRIGLLGASGYTGAEIVRLLANH--PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK--DADFSTVDAVFC 88 (359)
T ss_dssp --CCEEEEEECCSSHHHHHHHHHHHTC--SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSEEEE
T ss_pred cccCcEEEEECcCCHHHHHHHHHHHcC--CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc--hhHhcCCCEEEE
Confidence 345689999999999999999999988 99999999998888876642 11 1233332 334678999999
Q ss_pred cCCCchhhhhHHHHHhCCCeEEEcCCCCCCCC-------------------CCcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 108 SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE-------------------NVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~-------------------~~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
|+|++.+.++++.+ ++|++|||+|++||+++ .++|++||+|+++++ ++++|||
T Consensus 89 atp~~~s~~~a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n~~~i~-------~~~iIan 160 (359)
T 1xyg_A 89 CLPHGTTQEIIKEL-PTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEILREDIK-------KARLVAN 160 (359)
T ss_dssp CCCTTTHHHHHHTS-CTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHH-------TCSEEEC
T ss_pred cCCchhHHHHHHHH-hCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCccCHHHhc-------cCCEEEC
Confidence 99999999999999 99999999999999975 578999999999998 5789999
Q ss_pred CCchHHHHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcC
Q 017153 169 PNCSTIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLE 246 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e 246 (376)
||||||+++++|+||+++++|+ +++++|+||+||+|+.+++++ |+ .+..++.++|++.+|+|. ||
T Consensus 161 pgC~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~-------~~-----~~~~~ni~py~~~~h~h~-pE 227 (359)
T 1xyg_A 161 PGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGVSGAGRGAKEAN-------LY-----SEIAEGISSYGVTRHRHV-PE 227 (359)
T ss_dssp CCHHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGGG-------BH-----HHHTTCCEECSCSCCTHH-HH
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCCeEEEEEEEEccccCcccchhh-------hh-----HHHhcCeecccccccccH-HH
Confidence 9999999999999999999999 999999999999999887742 11 234456678999999988 66
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCC
Q 017153 247 NGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHF 322 (376)
Q Consensus 247 ~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~ 322 (376)
+++ |+.++++ .+++++|+|+|||++|||+.++|++++++++.+|++++|++ +|||+|++. +.+
T Consensus 228 ---i~~------~l~~~~~-~~~~v~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~V~v~~~---~~~ 294 (359)
T 1xyg_A 228 ---IEQ------GLSDVAQ-SKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDE---GVV 294 (359)
T ss_dssp ---HHH------HHHHHHT-SCCCCEEECEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCSSEEECCT---TCC
T ss_pred ---HHH------HHHHhcC-CCCCEEEEEEEecccceEEEEEEEEeCCCCCHHHHHHHHHHhhCCCCCEEEcCC---CCC
Confidence 444 4577776 46789999999999999999999999999999999999996 799999864 358
Q ss_pred CccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 323 PTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 323 p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|+|+++.|+|+|+|| ++.|. .++++++|+++|||+||||||||||||+|+
T Consensus 295 p~~~~v~g~n~~~ig-~~~d~---~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~ 344 (359)
T 1xyg_A 295 PRTHNVRGSNYCHMS-VFPDR---IPGRAIIISVIDNLVKGASGQALQNLNIML 344 (359)
T ss_dssp CBGGGTTTSSCEEEE-EEECS---STTEEEEEEEECTTTTTTHHHHHHHHHHHT
T ss_pred CCHHHhcCCCeEEEE-EEEeC---CCCEEEEEEEehhhhHhHHHHHHHHHHHHh
Confidence 999999999999999 67663 358999999999999999999999999985
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-68 Score=519.72 Aligned_cols=287 Identities=23% Similarity=0.339 Sum_probs=248.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC---CCCceee-----ecCc-ceEEeec-CccCC-CCCcEEEEc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR---SAGKQLS-----FQDK-AYTVEEL-TEDSF-DGVDIALFS 108 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~---~~g~~~~-----~~~~-~~~v~~~-~~~~~-~~~DvVf~a 108 (376)
+||+|+|||||+|++|+++|.+| |++++..+.+++ ++|+.+. +.+. ++.+.+. +.+++ .++|+||+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~--p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a 82 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRH--PHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLA 82 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC--TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEEC
T ss_pred eEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEEC
Confidence 79999999999999999999998 999999998877 9999876 3332 5667765 66677 899999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEEcCCCCCCCC-CC------------------cEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDNSSAFRMVE-NV------------------PLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~-~~------------------~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
+|++.+++++++++++|++|||+|++||+++ ++ .|++||+|+++++ ++++||||
T Consensus 83 ~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglPEvn~~~i~-------~~~iIanP 155 (337)
T 3dr3_A 83 TAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLK-------EANLIAVP 155 (337)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCTTTCCHHHH-------TCSEEECC
T ss_pred CChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEccccCHHHhC-------CCCEEecC
Confidence 9999999999999999999999999999965 32 4899999999998 68899999
Q ss_pred CchHHHHHHHHhHHHH--hCCCcEE-EEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcC
Q 017153 170 NCSTIICLMAATPLHR--RAKVTRM-VVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLE 246 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~--~~~i~~v-~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e 246 (376)
|||||+++++|+||++ .++++++ +++|+||+||+||++++. .|+ +++ +..+|++..|+|. ||
T Consensus 156 gC~tt~~~l~L~PL~~~g~~~~~~i~~v~t~~g~SGaG~~~~~~-------~~~-----~~~--n~~py~~~~h~h~-Pe 220 (337)
T 3dr3_A 156 GCYPTAAQLALKPLIDADLLDLNQWPVINATSGVSGAGRKAAIS-------NSF-----CEV--SLQPYGVFTHRHQ-PE 220 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCST-------TSG-----GGC--SEEECSTTTCTHH-HH
T ss_pred ChHHHHHHHHHHHHHHcCccCCCceEEEEEeeccccCCcccccc-------ccc-----ccc--ceEccCcccceec-hh
Confidence 9999999999999999 4777899 999999999999998862 122 223 5677887778776 65
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCC
Q 017153 247 NGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHF 322 (376)
Q Consensus 247 ~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~ 322 (376)
++++ ++. +++|+|||||++|||++++|++++++++.+|++++|++ +|||+|+++. .
T Consensus 221 ---i~~~----------l~~---~v~ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~l~~~Y~~~p~V~v~~~~---~- 280 (337)
T 3dr3_A 221 ---IATH----------LGA---DVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKG---V- 280 (337)
T ss_dssp ---HHHH----------HTS---CCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSSS---C-
T ss_pred ---HHhh----------hcC---CEEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHHhCCCCCEEECCCC---C-
Confidence 3333 332 79999999999999999999999999999999999987 5999998652 3
Q ss_pred CccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 323 PTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 323 p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
|+|+++.|+|+|+||+++. ++++++|+++|||+||||||||||||+|+
T Consensus 281 P~~~~v~gtn~~~ig~~~~------~~~l~~~~~~DNL~KGAAgqAVQ~~nlm~ 328 (337)
T 3dr3_A 281 PALKNVVGLPFCDIGFAVQ------GEHLIIVATEDNLLKGAAAQAVQCANIRF 328 (337)
T ss_dssp CCGGGTTTSSCEEEEEEEE------TTEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred CCHHHhCCCCcEEEEEEEe------CCEEEEEEEechHHHHHHHHHHHHHHHHh
Confidence 9999999999999999984 27999999999999999999999999984
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-68 Score=520.31 Aligned_cols=296 Identities=19% Similarity=0.287 Sum_probs=255.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-----cC-cceEEeecCccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-----QD-KAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-----~~-~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
++||+|+||||++|++++|+|.+| |.+++++++++++.|+.+.. .+ .++.+.+.+ +|.++|+||+|+|++
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~--p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~--~~~~vDvV~~a~g~~ 79 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH--PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPE--KLEPADILVLALPHG 79 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC--TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGG--GCCCCSEEEECCCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC--CCcEEEEEECchhhCchhHHhCchhcCcccccccchh--HhcCCCEEEEcCCcH
Confidence 489999999999999999999988 99999999998888876652 12 234444433 478899999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCCCCCC------------------CCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHH
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAFRMVE------------------NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTI 174 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~R~~~------------------~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~t 174 (376)
.+.+++++++++|++|||+|++||+++ .++|++||+|+++++ ++++|||||||||
T Consensus 80 ~s~~~a~~~~~aG~~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~~~i~-------~~~iIanp~C~tt 152 (345)
T 2ozp_A 80 VFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELYREALK-------GADWIAGAGCNAT 152 (345)
T ss_dssp HHHHTHHHHHTTCSEEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHHHHHHH-------TCSEEECCCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEcCccccCCChHHHHhhhccccchhhhccCcEeccccCHHHhh-------cCCEEeCCCcHHH
Confidence 999999999999999999999999975 689999999999998 5789999999999
Q ss_pred HHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHH
Q 017153 175 ICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE 252 (376)
Q Consensus 175 a~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~e 252 (376)
+++++|+||+++++|+ +++++|+||+||+|+++++++ ++ .+..++.++|++..|+|. ||
T Consensus 153 ~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~-------~~-----~~~~~n~~py~~~~h~~~-pe------ 213 (345)
T 2ozp_A 153 ATLLGLYPLLKAGVLKPTPIFVTLLISTSAGGAEASPAS-------HH-----PERAGSIRVYKPTGHRHT-AE------ 213 (345)
T ss_dssp HHHHHHHHHHHTTCBCSSCEEEEEEECSGGGCSSCCGGG-------CH-----HHHTTCCEEEECSCCTHH-HH------
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEEEccccCccccccc-------cc-----hhhccccccCCCCCccCh-Hh------
Confidence 9999999999999999 999999999999999988753 11 223445678888888877 55
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCC-CCCCCCcccc
Q 017153 253 EMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDR-ASNHFPTPLE 327 (376)
Q Consensus 253 e~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~-~~~~~p~~~~ 327 (376)
+.+.++..+ +++|+|+|||++|||+.++|++++++++.+|++++|++ +|||+|++++ +.+.+|+|++
T Consensus 214 -------i~~~l~~~~-~v~~~~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~v~v~~~~~~~~~~p~~~~ 285 (345)
T 2ozp_A 214 -------VVENLPGRP-EVHLTAIATDRVRGILMTAQCFVQDGWSERDVWQAYREAYAGEPFIRLVKQKKGVHRYPDPRF 285 (345)
T ss_dssp -------HHHTSSSCC-CEEEEEEECSCSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECCCSSSSCCSCCHHH
T ss_pred -------HHHHhCCCC-CeEEEEEEeccccEEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCCEEEEeCCCCcCCCCCHHH
Confidence 233344223 89999999999999999999999999999999999997 7999999765 4457999999
Q ss_pred ccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 328 VSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 328 v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.|+|+|+|| ++.|. .++++++|+++|||+||||||||||||+|+
T Consensus 286 ~~g~~~~~ig-~~~d~---~~~~~~~~~~~DNl~kGAAg~Avq~~nl~~ 330 (345)
T 2ozp_A 286 VQGTNYADIG-FELEE---DTGRLVVMTAIDNLVKGTAGHALQALNVRM 330 (345)
T ss_dssp HTTSCCEEEE-EEEET---TTTEEEEEEEECTTTTTTHHHHHHHHHHHT
T ss_pred hcCCceEEEE-EEEeC---CCCEEEEEEEeccHHHHHHHHHHHHHHHHh
Confidence 9999999999 77763 358999999999999999999999999985
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-65 Score=504.91 Aligned_cols=300 Identities=30% Similarity=0.443 Sum_probs=254.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe-cCCCCCceeee------------cCcceEEeecCccCCCCCcEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA-SKRSAGKQLSF------------QDKAYTVEELTEDSFDGVDIA 105 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~-s~~~~g~~~~~------------~~~~~~v~~~~~~~~~~~DvV 105 (376)
++||||+||||++|++++|+|.+| |+++++++. ++++.|+.+.. .+.++.+.+.+++.|.++|+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~--p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~vDvV 81 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKH--PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDHKDVDVV 81 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTC--SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGGTTCSEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhC--CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHhcCCCEE
Confidence 589999999999999999999987 999999997 66677776531 123455665566667889999
Q ss_pred EEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCccc---C-CCCCcEEEcCCchHHHHHHHHh
Q 017153 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---G-MGKGALIANPNCSTIICLMAAT 181 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~---~-~~~~~iVa~PgC~~ta~~l~L~ 181 (376)
|+|+|++.+.++++.++++|++|||+|++||+++++|+++||+|++.+...+. + ++++++|||||||||+++++|+
T Consensus 82 f~atp~~~s~~~a~~~~~aG~~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC~tt~~~l~l~ 161 (350)
T 2ep5_A 82 LSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIK 161 (350)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSSEEEECCCHHHHHHHHHHG
T ss_pred EECCChHHHHHHHHHHHHCCCEEEECCccccCCCCCCeeCCccCHHHhcChHhhhhhcccCceEEEcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887662210 0 1146799999999999999999
Q ss_pred HHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHH
Q 017153 182 PLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261 (376)
Q Consensus 182 pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~ 261 (376)
||++++++++++++|+||+||+|+.+... +.+++|++|+... +|.|.+.|+.
T Consensus 162 pL~~~~gi~~i~v~t~~~~SGaG~~~~~~--------------------~~~~~ni~py~~~--------~e~k~~~E~~ 213 (350)
T 2ep5_A 162 PLIEIATKSKIIITTLQAVSGAGYNGISF--------------------MAIEGNIIPYIKG--------EEDKIAKELT 213 (350)
T ss_dssp GGHHHHHTSEEEEEEEECGGGGCSSSSBH--------------------HHHTTCCBCCCTT--------HHHHHHHHHH
T ss_pred HHHHhcCCcEEEEEEEEecCcCCCCCCCC--------------------hHHhCCEEeccCC--------cchHHHHHHH
Confidence 99998999999999999999999985421 1246799998754 5688999999
Q ss_pred HHhCCC--------CCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC--------------CCcEEeeCCCC
Q 017153 262 KIWNDK--------DVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA--------------PGVVVIDDRAS 319 (376)
Q Consensus 262 ~il~~~--------~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~--------------~~v~v~~~~~~ 319 (376)
++|+.. .++++|+|+|||++|||+.++|++++++++.+|++++|+++ |||+|++.
T Consensus 214 ~~l~~~~g~~~~~~~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~~~~~~~~~~~~~~~~fv~v~~~--- 290 (350)
T 2ep5_A 214 KLNGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKSLPQQKNLPTAPKQPIIVRDE--- 290 (350)
T ss_dssp HHTCEECSSSEECCCCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEECCS---
T ss_pred HHHhhccccccccccccEEEEeEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhccccccccCCCCCCcEEECCC---
Confidence 999852 45899999999999999999999999999999999999864 46787753
Q ss_pred CCCCccccccCCCc---eEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 320 NHFPTPLEVSNKDD---VAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 320 ~~~p~~~~v~g~~~---v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.+|+|+.+.|+|+ |+|||++.|. +++++|+++|||+||||||||||||+|+
T Consensus 291 ~~~P~~~~~~~~~~~~~~~vgr~~~d~-----~~l~~~~~~DNl~kGAAg~Avqn~nl~~ 345 (350)
T 2ep5_A 291 EDRPQPIIDVNAESGMAVTVGRIRHEN-----NVLRLVVLGDNLVRGAAGITILTVEVMK 345 (350)
T ss_dssp TTCCCHHHHTTHHHHTSEEEEEEEEET-----TEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEecccCCCceEEEEEEEecC-----CEEEEEEEeccHHHhHHHHHHHHHHHHH
Confidence 35899998877665 9999998762 4699999999999999999999999984
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-64 Score=494.18 Aligned_cols=301 Identities=32% Similarity=0.481 Sum_probs=253.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe-cCCCCCceeee------------cCcceEEeecCccCC-C-CCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA-SKRSAGKQLSF------------QDKAYTVEELTEDSF-D-GVD 103 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~-s~~~~g~~~~~------------~~~~~~v~~~~~~~~-~-~~D 103 (376)
++||+|+||||++|++++|+|.+| |.++++++. ++++.|+.+.. .+.++.+.+.++++| . ++|
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~--p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADH--PMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVD 85 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC--SSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCC
T ss_pred cceEEEECcCCHHHHHHHHHHhcC--CCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCC
Confidence 479999999999999999999987 999999887 56677776531 112344444455667 5 899
Q ss_pred EEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCccc---C-CCCCcEEEcCCchHHHHHHH
Q 017153 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---G-MGKGALIANPNCSTIICLMA 179 (376)
Q Consensus 104 vVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~---~-~~~~~iVa~PgC~~ta~~l~ 179 (376)
+||+|+|++.+.++++.++++|++|||+|++||+++++|+++||+|++.+...+. + ++++++|||||||+|+++++
T Consensus 86 vV~~atp~~~~~~~a~~~~~aG~~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~~iIanpgC~tt~~~l~ 165 (354)
T 1ys4_A 86 IVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVIT 165 (354)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCCSSEEEECCCHHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEECCchhcCCCCCCccCcccCHHHhcChhhhhhhcccCCeEEECCCHHHHHHHHH
Confidence 9999999999999999999999999999999999988999999999887763211 0 11357999999999999999
Q ss_pred HhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHH
Q 017153 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (376)
Q Consensus 180 L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e 259 (376)
|+||+++++|++++++|+||+||+|+.+... +..++|++|+... +|.|.+.|
T Consensus 166 l~pL~~~~gi~~~~v~t~~~~SGaG~~~~~~--------------------~~~~~ni~py~~~--------~~~k~~~E 217 (354)
T 1ys4_A 166 LKPIMDKFGLEAVFIATMQAVSGAGYNGVPS--------------------MAILDNLIPFIKN--------EEEKMQTE 217 (354)
T ss_dssp HHHHHHHHCCSEEEEEEEBCSGGGCTTTSCH--------------------HHHTTCCBSCCTT--------HHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEEEEEcCcCCcccccc--------------------hHHhCCEEeccCc--------hhhHHHHH
Confidence 9999998789999999999999999985421 1246788998754 46788899
Q ss_pred HHHHhCC--------CCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC------------CcEEeeCCCC
Q 017153 260 TRKIWND--------KDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP------------GVVVIDDRAS 319 (376)
Q Consensus 260 ~~~il~~--------~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~------------~v~v~~~~~~ 319 (376)
+.++|+. .+++|+|+|||||++|||+.++|++++++++.+|++++|+++. ||+|+++
T Consensus 218 i~~~l~~~~g~~~~~~~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~~~~~~~~~~~~~~fv~v~~~--- 294 (354)
T 1ys4_A 218 SLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDPLKDLNLPTYAKPIVIREE--- 294 (354)
T ss_dssp HHHHTSEEETTEEECCCCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHCCTTTTSCCTTCCCSEEECCS---
T ss_pred HHHHHhccccccccCCCceEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhccccccccCCCCcEEEecC---
Confidence 9999874 3568999999999999999999999999999999999999865 5999864
Q ss_pred CCCCccccccCCCc---eEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhcC
Q 017153 320 NHFPTPLEVSNKDD---VAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEMLL 376 (376)
Q Consensus 320 ~~~p~~~~v~g~~~---v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~~ 376 (376)
+.+|+|+.+.|+|. |+|||++.|. .+++++|+++|||+||||||||||||+|+
T Consensus 295 ~~~p~~~~~~~~~~~~~~~vgr~~~~~----~~~~~~~~~~DNl~kGAAg~Avqn~nl~~ 350 (354)
T 1ys4_A 295 IDRPQPRLDRNEGNGMSIVVGRIRKDP----IFDVKYTALEHNTIRGAAGASVLNAEYFV 350 (354)
T ss_dssp TTCCCHHHHTTGGGGTSEEEEEEEECS----SSSEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred CCCCCceeecccCCCceEEEeeEeeCC----CCeEEEEEEehhhHHhHHHHHHHHHHHHH
Confidence 35899998887776 9999998763 15799999999999999999999999984
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=337.98 Aligned_cols=295 Identities=14% Similarity=0.210 Sum_probs=224.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe-------------cCCCCCceee-----------ecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA-------------SKRSAGKQLS-----------FQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~-------------s~~~~g~~~~-----------~~~~~~~v~-~ 93 (376)
++||||+|+ |++|++++|+|.+|++|.+++++++ +++..|+... ..++.+.+. .
T Consensus 1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~ 79 (337)
T 1rm4_O 1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD 79 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEec
Confidence 379999999 9999999999998878999999988 6666665321 233444443 3
Q ss_pred cCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 94 LTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 94 ~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
.+++. |. ++|+||+|+|++.+++.++.++++|+++||+|++|| + ++|..+|++|+++++. +.++||||
T Consensus 80 ~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r-~-d~p~~V~GVN~~~~~~------~~~IIsNa 151 (337)
T 1rm4_O 80 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK-G-DIPTYVVGVNEEGYTH------ADTIISNA 151 (337)
T ss_dssp SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB-S-SCCBCCTTTTGGGCCT------TCSEEECC
T ss_pred CChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCccc-C-CCCeEeecCCHHHhCC------CCeEEECC
Confidence 34443 54 899999999999999999999999999999999999 3 5789999999999873 36899999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
||||||++++|+||+++|+|+++.+||+|++||+ ++..+. + + ...+.++.+++|++|+..+
T Consensus 152 sCtTn~lap~lk~L~~~fgI~~~~mtTvha~Tga-q~l~d~----~---~-----~~~r~~r~~a~NiiP~~tg------ 212 (337)
T 1rm4_O 152 SCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDA----S---H-----RDLRRARAACLNIVPTSTG------ 212 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SCSSSC----C---C-----SSTTTTSCTTTCCEEECCC------
T ss_pred ChHHHHHHHHHHHHHHhcCeeEEEEEEEEecCCc-cchhhc----c---h-----hhhccchhhhcCcccccch------
Confidence 9999999999999999999999999999999999 765552 1 1 1345578899999999866
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---C--Cc-EEeeCCCCCCCC
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---P--GV-VVIDDRASNHFP 323 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~--~v-~v~~~~~~~~~p 323 (376)
++.+ +.|++|..+.+++++|+|||+++||+.+++++++++++.||++++|+++ | +| .+.+++ .-
T Consensus 213 --aaka----v~kvlPel~gkl~~~a~RVP~~~gs~~dl~~~l~k~~t~eei~~~lk~a~~~~lkgil~y~~~~----~v 282 (337)
T 1rm4_O 213 --AAKA----VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP----LV 282 (337)
T ss_dssp --HHHH----HHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSC----CC
T ss_pred --hhHH----HHhhhhhhcCcEEEEEEEecCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCcCceecCcCCC----ee
Confidence 2333 3789998888999999999999999999999999999999999999974 2 22 333321 11
Q ss_pred ccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 324 TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 324 ~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+ .+..|...-.|--...-.. -.++-+.+++--|| -+|=+-+-+-.+..
T Consensus 283 s-~d~~~~~~s~i~d~~~~~~-~~~~~~k~~~wydn-e~gys~r~~d~~~~ 330 (337)
T 1rm4_O 283 S-IDFRCTDVSSTIDSSLTMV-MGDDMVKVIAWYDN-EWGYSQRVVDLADI 330 (337)
T ss_dssp G-GGGTTCCSSEEEEGGGCEE-ETTTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred e-cccCCCCcccccchhccce-ecCCEEEEEEEECC-CccchhhHHHHHHH
Confidence 1 1333333222210000000 01256788899999 56666666655544
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=337.79 Aligned_cols=294 Identities=14% Similarity=0.174 Sum_probs=220.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-----------------------eeeecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----------------------QLSFQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-----------------------~~~~~~~~~~v~-~~ 94 (376)
++||||+|+ ||+|++++|+|.+| |+++++++++....++ .+...++.+.+. ..
T Consensus 1 ~ikVgI~G~-G~iG~~l~R~l~~~--~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 77 (330)
T 1gad_O 1 TIKVGINGF-GRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER 77 (330)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECc-CHHHHHHHHHHHcC--CCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcC
Confidence 379999997 99999999999988 9999999987644432 111123334443 33
Q ss_pred CccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++. | .++|+||+|+|++.+++.+++++++|+++||+|++| +++.|..+|++|+++++ +.++|||||
T Consensus 78 dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~--~~~~p~~V~GvN~~~~~-------~~~iIsNps 148 (330)
T 1gad_O 78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS--KDNTPMFVKGANFDKYA-------GQDIVSNAS 148 (330)
T ss_dssp SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC--SSSCCBCCTTTTGGGCC-------SCSEEECCC
T ss_pred ChhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC--CCCCCeEeecCCHHHhC-------CCCEEEcCC
Confidence 4544 3 489999999999999999999999999999999999 55678999999999987 578999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|||||++++|+||+++|+|++..++|+|++||+ ++++++. + + .+.+++|.+++|++|+.+.. .
T Consensus 149 Ctt~~lap~lkpL~~~~gI~~~~~ttvha~Tg~-q~~vd~~-------~-~---~~~~~~r~~~~NiiP~~tg~-----a 211 (330)
T 1gad_O 149 CTTNCLAPLAKVINDNFGIIEGLMTTVHATTAT-QKTVDGP-------S-H---KDWRGGRGASQNIIPSSTGA-----A 211 (330)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTT-SBSSSCC-------C-S---SCGGGGSBTTTCCEEEECCT-----T
T ss_pred hHHHHHHHHHHHHHHhcCeeEEEEEEEEecccc-ccccccc-------c-c---CCCccccchhhCeEEcCCCc-----c
Confidence 999999999999999999999999999999999 7777632 1 1 14678888999999987542 3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCcccc
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPTPLE 327 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~~~~ 327 (376)
+|+ .++++..+.+++|+|+|||++|||+.++|++++++++.+|++++|+++ |+..++...++ ..-+ .+
T Consensus 212 ~ei-------~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~k~a~~~~l~gil~y~~~-~~vs-~d 282 (330)
T 1gad_O 212 KAV-------GKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTED-DVVS-TD 282 (330)
T ss_dssp TTH-------HHHSGGGTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS-CCCG-GG
T ss_pred hhH-------HHHHHHhcCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhcCCCCCEEeeECC-ceee-ee
Confidence 333 455666667899999999999999999999999999999999999873 43333321110 0111 12
Q ss_pred ccCCCceEEEEEEeccCC---CCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 328 VSNKDDVAVGRIRRDVSQ---DGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 328 v~g~~~v~vg~~~~~~~~---~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
..|...-.| + |... -.++-+.+++--|| -+|=+-+-+..+..|
T Consensus 283 ~~~~~~s~~--~--d~~~~~~~~~~~~k~~~wydn-e~gys~r~~d~~~~~ 328 (330)
T 1gad_O 283 FNGEVCTSV--F--DAKAGIALNDNFVKLVSWYDN-ETGYSNKVLDLIAHI 328 (330)
T ss_dssp GTTCCSSEE--E--ETTTCEEEETTEEEEEEEECT-THHHHHHHHHHHHHT
T ss_pred ECCCCcceE--E--ecccCeEecCCEEEEEEEECC-CchhhhHHHHHHHHh
Confidence 233322222 1 1000 01256788899999 677776666666544
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=337.00 Aligned_cols=294 Identities=15% Similarity=0.186 Sum_probs=218.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-------------CCCCce----------eeecCcceEEe-ecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAGKQ----------LSFQDKAYTVE-ELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-------------~~~g~~----------~~~~~~~~~v~-~~~ 95 (376)
+||||+|+ ||+|++++|+|.+| |+++++++++. +..|+. +...++++.+. +.+
T Consensus 2 ikVgI~G~-G~iGr~l~R~l~~~--~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 78 (334)
T 3cmc_O 2 VKVGINGF-GRIGRNVFRAALKN--PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERD 78 (334)
T ss_dssp EEEEEESC-SHHHHHHHHHHTTC--TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECC-CHHHHHHHHHHhCC--CCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCC
Confidence 79999999 99999999999988 99999999875 333321 22234456665 445
Q ss_pred ccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 96 EDS--FD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 96 ~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
++. |. ++|+||+|+|++.+++.+++++++|+ +|||++++ ++.|+++||+|+++++.- ..++||||
T Consensus 79 p~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~----d~~p~~V~eVN~~~i~~~-----~~~IIsNp 149 (334)
T 3cmc_O 79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK----NEDITIVMGVNQDKYDPK-----AHHVISNA 149 (334)
T ss_dssp GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB----SCSEECCTTTSGGGCCTT-----TCCEEECC
T ss_pred hhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCc----cCCCEeccccCHHHhCcc-----CCeEEECC
Confidence 544 44 89999999999999999999999999 89999987 357899999999999720 26899999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
||||||++++|+||+++|+|++..++|+|++||+++. .+. .+ ...+++|.+++|++|+.++.
T Consensus 150 sCttn~lap~lkpL~~~~gI~~~~mtTvha~Sg~q~~-~d~-------~~-----~~~r~~r~~a~NiiP~~tg~----- 211 (334)
T 3cmc_O 150 SCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRI-LDL-------PH-----KDLRRARAAAESIIPTTTGA----- 211 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBS-SSC-------CC-----SSTTTTSBTTTCCEEEECSH-----
T ss_pred ChHHHHHHHHHHHHHHhcCceeeeEEEEEeccchhhh-ccc-------cc-----cccccchhhhhCEEeeccCc-----
Confidence 9999999999999999999999999999999998543 331 11 24577788999999998762
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCccc
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPTPL 326 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~~~ 326 (376)
..|+.++|+..+++++|+|+|||++|||+.++|++++++++.+|++++|+++ |+..++...++ ..-+.
T Consensus 212 -------a~ei~kvlp~l~gkl~~~a~rVP~~~gs~~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~-~~vs~- 282 (334)
T 3cmc_O 212 -------AKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEE-PLVSR- 282 (334)
T ss_dssp -------HHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS-CCCGG-
T ss_pred -------ccchhhhChhhcCcEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCCcccCCCC-CEeee-
Confidence 2345788887777999999999999999999999999999999999999974 43323321111 01111
Q ss_pred cccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 327 EVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 327 ~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+..|...-.|--...-.. -.++-+.+++--|| -+|=+-+-+..+..
T Consensus 283 d~~~~~~s~~~d~~~~~~-~~~~~~k~~~wydn-e~gys~r~~d~~~~ 328 (334)
T 3cmc_O 283 DYNGSTVSSTIDALSTMV-IDGKMVKVVSWYDN-ETGYSHRVVDLAAY 328 (334)
T ss_dssp GGTTCCSSEEEEGGGCEE-ETTTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred eeCCCCccceeccccCeE-ecCCEEEEEEEeCC-CchhhhHHHHHHHH
Confidence 333333222210000000 01257888999999 66766666655544
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=330.79 Aligned_cols=292 Identities=15% Similarity=0.206 Sum_probs=219.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-------------CCCCce----------eeecCcceEEe-ecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAGKQ----------LSFQDKAYTVE-ELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-------------~~~g~~----------~~~~~~~~~v~-~~~ 95 (376)
+||||+|+ ||+|++++|+|.+|+.|+++++++.+. +..|+. +...++++.+. +.+
T Consensus 1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence 58999999 999999999998764488999999873 334442 22234456665 445
Q ss_pred ccCC--C--CCcEEEEcCCCchhhhhHHHHHhCCC--eEEEcCCCCCCCCCCc-EEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 96 EDSF--D--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 96 ~~~~--~--~~DvVf~a~~~~~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~~-~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
++.+ . ++|+||+|+|++.+++.+++++++|+ +|||++++ +.| +++||+|+++++. +.++|||
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~-----d~p~~~V~eVN~~~i~~------~~~iIsN 148 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK-----GEDITVVIGCNEDQLKP------EHTIISC 148 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB-----SCSEECCTTTTGGGCCT------TCCEEEC
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCC-----CCCceEEeccCHHHhCC------CCcEEEC
Confidence 5544 3 89999999999999999999999999 89999987 477 9999999999973 3689999
Q ss_pred CCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
|||||||++++|+||+++|+|++..++|+|++||+++. ++. .+ ...+++|.+++|++|+.|+.
T Consensus 149 psCttn~lap~lkpL~~~~gI~~~~~ttvha~Sg~q~~-~d~-------~~-----~~~~~~r~~a~NiiP~~tg~---- 211 (332)
T 1hdg_O 149 ASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRV-LDL-------PH-----KDLRRARAAAVNIIPTTTGA---- 211 (332)
T ss_dssp CCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBS-SSC-------CC-----SSTTTTSBGGGCCEEECCTH----
T ss_pred CccHHHHHHHHHHHHHHhcCeeEeEEEEEEeccchhhh-hcC-------cc-----cccccchhHhhCcccccCCc----
Confidence 99999999999999999999999999999999998543 431 11 14567778899999998762
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCcc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPTP 325 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~~ 325 (376)
..|+.++|+..+++++|+|+|||++|||+.++|++++++++.+|++++|+++ |+..++...++ ..-+.
T Consensus 212 --------a~ei~kvLp~l~gkl~~~a~rVP~~~g~l~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~-~~vs~ 282 (332)
T 1hdg_O 212 --------AKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDE-PIVSS 282 (332)
T ss_dssp --------HHHHHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECS-CCCGG
T ss_pred --------ccchhhhCccccCCEEEEeEEccccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCcccccCC-Ceeee
Confidence 2345788887777999999999999999999999999999999999999974 43223321111 01111
Q ss_pred ccccCCCceEEEEEEeccCC---CCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 326 LEVSNKDDVAVGRIRRDVSQ---DGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 326 ~~v~g~~~v~vg~~~~~~~~---~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
+..|...-.| + |... -.++-+.+++--|| -+|=+-+-+-.+..|
T Consensus 283 -d~~~~~~s~~--~--d~~~~~~~~~~~~k~~~wydn-e~gys~r~~d~~~~~ 329 (332)
T 1hdg_O 283 -DIIGTTFSGI--F--DATITNVIGGKLVKVASWYDN-EYGYSNRVVDTLELL 329 (332)
T ss_dssp -GGTTCCCSEE--E--ETTTCEEETTTEEEEEEEECT-THHHHHHHHHHHHHG
T ss_pred -eeCCCCccce--e--ccccCeEecCCEEEEEEEeCC-CccchhHHHHHHHHH
Confidence 2233322222 1 1000 01256788899999 667776666666543
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=323.92 Aligned_cols=292 Identities=18% Similarity=0.246 Sum_probs=214.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhc---CCCCCeEEEEEecC-------------CCCCc----------eeeecCcceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSD---RDFPYRSIKMLASK-------------RSAGK----------QLSFQDKAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~---~~~p~~~l~~v~s~-------------~~~g~----------~~~~~~~~~~v~ 92 (376)
++||||+|+ |++|++++|+|.+ | |+++++++.+. +..|+ .+...++.+.+.
T Consensus 2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~--~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~ 78 (339)
T 2x5j_O 2 TVRVAINGF-GRIGRNVVRALYESGRR--AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVL 78 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTSGG--GTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEE
T ss_pred CeEEEEECc-CHHHHHHHHHHHcCCCC--CCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEE
Confidence 489999999 9999999999998 7 99999999864 22222 122233455554
Q ss_pred -ecCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCe--EEEcCCCCCCCCCCc-EEeeccCHHhhcCcccCCCCCc
Q 017153 93 -ELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSI--VVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGA 164 (376)
Q Consensus 93 -~~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~--VIDlS~~~R~~~~~~-~~lpevN~~~i~~~~~~~~~~~ 164 (376)
..+++. |. ++|+||+|+|++.+++.+++++++|++ |||+++++ +.| ..+||+|+++++. ..+
T Consensus 79 ~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~----d~p~~~V~gvN~~~~~~------~~~ 148 (339)
T 2x5j_O 79 HERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSN----DLDATVVYGVNQDQLRA------EHR 148 (339)
T ss_dssp CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCT----TSSEECCTTTSGGGCCT------TCC
T ss_pred ecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccC----CCCceeecccCHHHhcC------CCC
Confidence 234444 43 899999999999999999999999998 99999986 466 8899999999983 368
Q ss_pred EEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCC
Q 017153 165 LIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPV 244 (376)
Q Consensus 165 iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~ 244 (376)
+||||||||||++++|+||+++|+|++..++|+|++||+++. ++.. + .+.+++|.+++|++|+.++.
T Consensus 149 iIsnpsCttn~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~-~d~~-------~-----~d~r~~r~a~~NiiP~~tg~ 215 (339)
T 2x5j_O 149 IVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQV-IDAY-------H-----PDLRRTRAASQSIIPVDTKL 215 (339)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCC------------------------CTTTTSCCCCCCEEECCCH
T ss_pred EEECCCcHHHHHHHHHHHHHHccCcceeeEEEEEeccccccc-cccc-------c-----ccccchhhHHhCcccccCCh
Confidence 999999999999999999999999999999999999999643 4532 1 13466788899999998762
Q ss_pred cCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCC
Q 017153 245 LENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNH 321 (376)
Q Consensus 245 ~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~ 321 (376)
..|+.+++|..+++++|+|+|||+++||+.++|++++++++.+|++++|+++ |+..++...++ .
T Consensus 216 ------------a~ei~kvlp~l~gkl~~~a~rVP~~~g~~~~l~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~-~ 282 (339)
T 2x5j_O 216 ------------AAGITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTEL-P 282 (339)
T ss_dssp ------------HHHHHHHSGGGTTSEEEEEEECSSCSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS-C
T ss_pred ------------HHHHHHHHHHhcCcEEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcCCCcEEcccCC-c
Confidence 2356888988888999999999999999999999999999999999999874 43333321111 0
Q ss_pred CCccccccCCCceEE--EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 322 FPTPLEVSNKDDVAV--GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 322 ~p~~~~v~g~~~v~v--g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
.-+......+..+-+ .--..- .++-+.+++--|| -+|=+-+-+-.+..
T Consensus 283 ~vs~d~~~~~~s~~~d~~~~~~~----~~~~~k~~~wydn-e~gys~r~~d~~~~ 332 (339)
T 2x5j_O 283 LVSVDFNHDPHSAIVDGTQTRVS----GAHLIKTLVWCDN-EWGFANRMLDTTLA 332 (339)
T ss_dssp CCGGGGTTCCSSEEEEEEEEEEE----TTTEEEEEEEECH-HHHHHHHHHHHHHH
T ss_pred ccccccCCCCCceEEEcccceec----cCCEEEEEEEeCC-CcccHhHHHHHHHH
Confidence 112112222222222 211110 2367889999999 66767666665554
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=328.48 Aligned_cols=292 Identities=16% Similarity=0.194 Sum_probs=215.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCc-----------------------eeeecCcceEEe-
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK-----------------------QLSFQDKAYTVE- 92 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~-----------------------~~~~~~~~~~v~- 92 (376)
|++||||+|+ |++|++++|+|.+| |+++++++.++ ...++ .+...++.+.+.
T Consensus 2 M~ikVgI~G~-G~iGr~~~R~l~~~--~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~ 78 (335)
T 1u8f_O 2 GKVKVGVNGF-GRIGRLVTRAAFNS--GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQ 78 (335)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHH--CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred CceEEEEEcc-CHHHHHHHHHHHcC--CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEe
Confidence 3589999998 99999999999988 99999999874 22221 111122334443
Q ss_pred ecCccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 93 ELTEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 93 ~~~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
..++++ | .++|+||+|+|++.+++.+++++++|+++||+|++- ++.|..+||+|+++++. +.++|||
T Consensus 79 ~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~---~~~p~~V~gvN~~~~~~------~~~iIsn 149 (335)
T 1u8f_O 79 ERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS---ADAPMFVMGVNHEKYDN------SLKIISN 149 (335)
T ss_dssp CSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC---SSSCBCCTTTTGGGCCT------TCSEEEC
T ss_pred cCCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCC---CCCCeEEeccCHHHhCC------CCCEEEC
Confidence 234444 4 589999999999999999999999999999999983 45789999999999973 3689999
Q ss_pred CCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 169 PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
|||||||++++|+||+++|+|++..++|+|++||+ ++++++. + + .+.+++|.+++|++|+..+.
T Consensus 150 psCtt~~l~~~lkpL~~~~gI~~~~~tt~~a~Tg~-q~~vd~~-------~-~---~~~~~~r~~~~NiiP~~tg~---- 213 (335)
T 1u8f_O 150 ASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITAT-QKTVDGP-------S-G---KLWRDGRGALQNIIPASTGA---- 213 (335)
T ss_dssp CCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SBSSSCC-------C-T---TCGGGGSBTTTCCEEEECCT----
T ss_pred CChHHHHHHHHHHHHHHhCCcceeEEEEEeccccC-ccccccc-------c-c---cccccchhhhcCceeccCCh----
Confidence 99999999999999999999999999999999999 4555531 1 0 14577788999999987542
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCcc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPTP 325 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~~ 325 (376)
.+| ..++++..+++++|+|+|||++|||+.++|++|+++++.+|++++|+++ |+..++...++ ..-+.
T Consensus 214 -a~e-------i~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~~~~t~eei~~~~~~a~~~~~~~il~~~~~-~~vs~ 284 (335)
T 1u8f_O 214 -AKA-------VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEH-QVVSS 284 (335)
T ss_dssp -TTT-------HHHHSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS-CCCGG
T ss_pred -hHH-------HHHHHHHhCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCcEEcccCC-Cccee
Confidence 323 3566777777999999999999999999999999999999999999974 44333322111 01111
Q ss_pred ccccCCC-ceEE----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 326 LEVSNKD-DVAV----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 326 ~~v~g~~-~v~v----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+..|.. .+-+ +.... ++.+.+++--|| -+|=+-+-+-.+..
T Consensus 285 -d~~~~~~s~~~d~~~~~~~~------~~~~k~~~wydn-e~gy~~r~~~~~~~ 330 (335)
T 1u8f_O 285 -DFNSDTHSSTFDAGAGIALN------DHFVKLISWYDN-EFGYSNRVVDLMAH 330 (335)
T ss_dssp -GGTTCCCSEEEETTTCEEEE------TTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred -eecCCCCceEEeCCCCEEec------CCEEEEEEEEcC-cchhHhHHHHHHHH
Confidence 222211 1111 01111 257889999999 46666666655544
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=328.03 Aligned_cols=293 Identities=14% Similarity=0.182 Sum_probs=215.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec-CCCCC-------------c----------eeeecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS-KRSAG-------------K----------QLSFQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s-~~~~g-------------~----------~~~~~~~~~~v~-~ 93 (376)
++||||+|+ |++|++++|+|.+| |+++++++++ ....+ + .+...++++.+. .
T Consensus 17 ~ikVgI~G~-G~iGr~llR~l~~~--p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 93 (354)
T 3cps_A 17 QGTLGINGF-GRIGRLVLRACMER--NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQA 93 (354)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTC--SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECC
T ss_pred ceEEEEECC-CHHHHHHHHHHHcC--CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEec
Confidence 589999999 99999999999988 9999999987 33322 1 111123344443 3
Q ss_pred cCccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEE
Q 017153 94 LTEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIA 167 (376)
Q Consensus 94 ~~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa 167 (376)
.+++. | .++|+||+|+|++.+++.+++++++|+ +|||++++ +++|..+||+|+++++.. ..++||
T Consensus 94 ~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~pad----d~~p~~V~GVN~~~~~~~-----~~~IIS 164 (354)
T 3cps_A 94 KDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPK----DNVPMYVMGVNNTEYDPS-----KFNVIS 164 (354)
T ss_dssp SCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCS----SCCCBCCTTTTGGGCCTT-----TCSEEE
T ss_pred CChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCC----CCCCEEEeccCHHHhCcC-----CCcEEE
Confidence 35554 4 589999999999999999999999999 89999986 347899999999999831 268999
Q ss_pred cCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 168 ~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||||||||++++|+||+++|+|++..++|+|++||+ ++++++..+|. ...+..+.+++|++|+..+.
T Consensus 165 NpsCtTn~lap~lkpL~~~~gI~~g~mtTvha~Tg~-q~~vd~~~~~~---------k~~r~~r~aa~NiiP~~tG~--- 231 (354)
T 3cps_A 165 NASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTAN-QLTVDGPSKGG---------KDWRAGRCAGNNIIPASTGA--- 231 (354)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT-SCSSSCCCCC-----------CCGGGSCTTSCCEEEECCH---
T ss_pred CCCcHHHHHHHHHHHHHHhCCeeEEEEEEEeccccc-chhhhccchhc---------cccccccchhccEEecCcCH---
Confidence 999999999999999999999999999999999999 77777421110 12234677899999998652
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCc
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPT 324 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~ 324 (376)
. .|+.++|+..+.+++|+|+|||++|||+.++|++++++++.+||+++|+++ |+..++...++ ..-+
T Consensus 232 --a-------kei~kvlp~l~gkl~~~a~rVP~~~gs~~dl~~~l~k~~t~eeI~~~~k~a~~~~lkgil~y~~~-~~vs 301 (354)
T 3cps_A 232 --A-------KAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSD-DVVS 301 (354)
T ss_dssp --H-------HHHHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS-CCCG
T ss_pred --H-------HHHHHHHHhcCCcEEEEEEEeccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCCCCccCccCC-Ceee
Confidence 2 234667887778899999999999999999999999999999999999874 43323321110 0111
Q ss_pred cccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 PLEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. +..|...-.| +... .++-+.+++--|| -+|=+-+-+-.+..
T Consensus 302 ~-d~~~~~~s~~~d~~~~~~~------~~~~~k~~~wydn-e~gys~r~~d~~~~ 348 (354)
T 3cps_A 302 T-DFIGCKYSSIFDKNACIAL------NDSFVKLISWYDN-ESGYSNRLVDLAVY 348 (354)
T ss_dssp G-GGTTCCCSEEEEGGGCEEE------ETTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred E-EEcCCCcceEEecccCeEe------cCCEEEEEEEECC-CcchHhHHHHHHHH
Confidence 1 2233322222 1111 1256788899999 66666666655544
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=315.29 Aligned_cols=289 Identities=15% Similarity=0.212 Sum_probs=216.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec-------------CCCCCc----------eeeecCcceEEe-ecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS-------------KRSAGK----------QLSFQDKAYTVE-ELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s-------------~~~~g~----------~~~~~~~~~~v~-~~~ 95 (376)
+||||+|+ |++|++++|+|.+| +++++++.+ ++..|+ .+.+.++.+.+. ..+
T Consensus 1 ikVgInG~-G~IGr~vlr~l~~~---~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 76 (331)
T 2g82_O 1 MKVGINGF-GRIGRQVFRILHSR---GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD 76 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH---TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhC---CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCC
Confidence 58999999 99999999999886 678887653 355664 233344566665 335
Q ss_pred cc--CCC--CCcEEEEcCCCchhhhhHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 96 ED--SFD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 96 ~~--~~~--~~DvVf~a~~~~~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
++ .|. ++|+||+|+|++.+++.+++++++|+ +|||++++ +++|+.+||+|+++++.- ..++||||
T Consensus 77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~----d~~p~vV~gVN~~~~~~~-----~~~IIsna 147 (331)
T 2g82_O 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK----GEDITIVMGVNHEAYDPS-----RHHIISNA 147 (331)
T ss_dssp GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB----SCSEECCTTTTGGGCCTT-----TCCEEECC
T ss_pred hhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCc----CCCCEEeeccCHHHhCcC-----CCCEEECC
Confidence 54 365 89999999999999999999999999 89999887 357899999999999830 26799999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
||||+|++++|+||+++|+|+++.+||+|++||+ ++.++. .+ .+.++++.+++|++|+..+.
T Consensus 148 sCtTn~lap~lk~L~~~fgI~~~~mtTvha~Tg~-q~~~d~-------~~-----~d~r~~r~~a~NiIP~~tGa----- 209 (331)
T 2g82_O 148 SCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTND-QRLLDL-------PH-----KDLRRARAAAINIIPTTTGA----- 209 (331)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT-SBSSSC-------CC-----SSTTTTSBGGGCCEEECCCH-----
T ss_pred ChHHHHHHHHHHHHHHhcCccEEEEEEEeecccc-cchhcc-------cc-----ccccccchhhhCccccCCCc-----
Confidence 9999999999999999999999999999999999 555542 11 14577889999999998662
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCc---EEeeCCCCCCCC
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGV---VVIDDRASNHFP 323 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v---~v~~~~~~~~~p 323 (376)
..|..|++|.++++++++|+|||+++||+.+++++|+++++.||++++|+++ |+. .+.+++ .-
T Consensus 210 -------akav~kIlp~L~gkl~g~a~RVPv~~gs~~dl~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~----~v 278 (331)
T 2g82_O 210 -------AKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDE----IV 278 (331)
T ss_dssp -------HHHHTTTCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC----CC
T ss_pred -------hhhhhhhHHhcCCCEEEEEEEeCCCCEEEEEEEEEECCCCCHHHHHHHHHHhhcCccCCccCCCCCC----ee
Confidence 2345788888878999999999999999999999999999999999999974 322 232221 11
Q ss_pred ccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 324 TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 324 ~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+. +..|...-.|--...-.. - ++-+.+++--|| -+|=+-+-+-.+..
T Consensus 279 s~-d~~~~~~s~~~d~~~~~~-~-~~~~k~~~wydn-e~gys~r~~d~~~~ 325 (331)
T 2g82_O 279 LQ-DIVMDPHSSIVDAKLTKA-L-GNMVKVFAWYDN-EWGYANRVADLVEL 325 (331)
T ss_dssp GG-GGTTCCCSEEEEGGGCEE-E-TTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred ee-eeCCCCccceecchhccc-c-CCEEEEEEEECC-CchhHHHHHHHHHH
Confidence 11 333333222210000000 0 256788888999 56666666655544
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=313.65 Aligned_cols=292 Identities=15% Similarity=0.186 Sum_probs=218.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-------------CCCCcee----------eecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAGKQL----------SFQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-------------~~~g~~~----------~~~~~~~~v~-~~ 94 (376)
++||||+|+ |++|++++|+|.+|+.|+++++++.+. +..|+.. ...++.+.+. ..
T Consensus 2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (339)
T 3b1j_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR 80 (339)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecC
Confidence 489999999 999999999998764478999988753 3444421 1223344443 23
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCe--EEEcCCCCCCCCCCc-EEeeccCHHhhcCcccCCCCCcEEE
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSI--VVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIA 167 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~--VIDlS~~~R~~~~~~-~~lpevN~~~i~~~~~~~~~~~iVa 167 (376)
++++ |. ++|+||+|+|++.+++.+++++++|++ |||++++ +++| ..+|++|+++++.. +.++||
T Consensus 81 dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~----~~~p~~~V~gVN~~~~~~~-----~~~IIS 151 (339)
T 3b1j_A 81 NPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK----GEGVGTYVIGVNDSEYRHE-----DFAVIS 151 (339)
T ss_dssp CGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB----SSSCEECCTTTTGGGCCTT-----TCSEEE
T ss_pred ChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCC----CCCCeeEEcccCHHHhCcC-----CCeEEE
Confidence 4443 53 899999999999999999999999999 9999987 3467 89999999999831 268999
Q ss_pred cCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 168 ~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||||||||++++|+||+++|+|+++.++|+|++||+ +++++.. + ...+.+|..++|++|+.++
T Consensus 152 nasCtTn~lap~lk~L~~~fgI~~~~~tTvha~Tg~-q~~vd~~-------~-----~d~r~~r~a~~NiiP~~tg---- 214 (339)
T 3b1j_A 152 NASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLD-QRILDAS-------H-----RDLRRARAAAVNIVPTTTG---- 214 (339)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT-SCSSSCC-------C-----SSTTTTSCTTSCCEEEECS----
T ss_pred CCcchhhHHHHHHHHHHHhCCeeEEEEEEEEeecCC-chhcccc-------h-----hhhhccccHHHceEcccCc----
Confidence 999999999999999999999999999999999999 6666632 1 1345578889999999866
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCc
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPT 324 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~ 324 (376)
++.+ +.+++|..+.+++++|+|||+++||+.+++++++++++.||++++|+++ |+..++...++ ..-+
T Consensus 215 ----aaka----v~kVlpeL~gkl~g~a~rVP~~~g~~~dl~v~l~k~~t~eeI~~~lk~a~~~~l~gil~y~~~-~~vs 285 (339)
T 3b1j_A 215 ----AAKA----VALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDL-PLVS 285 (339)
T ss_dssp ----HHHH----HHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHSTTBTTEEEECS-CCCG
T ss_pred ----hHHH----HHHHhHhhcCcEEEEEEEeccCCEEEEEEEEEEcCcCCHHHHHHHHHHhhcCCCCCccCccCC-ceee
Confidence 2222 4788988888999999999999999999999999999999999999874 43333321111 0111
Q ss_pred cccccCCC-ceEE----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 PLEVSNKD-DVAV----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~~~v~g~~-~v~v----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. +..|.. .+-+ +... .++-+.+++--|| -+|=+-+-+-.+..
T Consensus 286 ~-d~~~~~~s~~~d~~~~~~~------~~~~~k~~~wydn-e~gys~r~~d~~~~ 332 (339)
T 3b1j_A 286 S-DFRGTDESSIVDSSLTLVM------DGDLVKVIAWYDN-EWGYSQRVVDLAEL 332 (339)
T ss_dssp G-GGTTCCSSEEEEGGGCEEE------TTTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred h-hcCCCCCceEEecccCcee------cCCEEEEEEEeCC-CcchHhHHHHHHHH
Confidence 1 223322 2222 1111 1256888899999 66766666655544
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-39 Score=312.37 Aligned_cols=289 Identities=16% Similarity=0.224 Sum_probs=214.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCC-------------Cc------------eeeecCcceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSA-------------GK------------QLSFQDKAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~-------------g~------------~~~~~~~~~~v~ 92 (376)
++||||+|+ |++|++++|+|.+| |+++++++.++ ... |+ .+...++.+.+.
T Consensus 3 ~ikVgI~G~-GrIGr~l~R~l~~~--p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~ 79 (337)
T 3e5r_O 3 KIKIGINGF-GRIGRLVARVALQS--EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF 79 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEE
T ss_pred ceEEEEECc-CHHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEE
Confidence 579999999 99999999999988 99999999873 111 11 011122234433
Q ss_pred -ecCccCC----CCCcEEEEcCCCchhhhhHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcE
Q 017153 93 -ELTEDSF----DGVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL 165 (376)
Q Consensus 93 -~~~~~~~----~~~DvVf~a~~~~~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~i 165 (376)
..+++++ .++|+||+|+|++.+++.+++++++|+ +|||+++. +.|..++|+|+++++. +.++
T Consensus 80 ~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~-----d~p~~V~gvN~~~~~~------~~~i 148 (337)
T 3e5r_O 80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK-----DAPMFVCGVNEDKYTS------DIDI 148 (337)
T ss_dssp CCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS-----SSCBCCTTTTGGGCCT------TCCE
T ss_pred ecCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCC-----CCCEEEeccCHHHhCC------CCcE
Confidence 3355543 489999999999999999999999999 79998873 5789999999999873 3689
Q ss_pred EEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCc
Q 017153 166 IANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVL 245 (376)
Q Consensus 166 Va~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~ 245 (376)
||||||||||++++|+||+++|+|++..++|+|++||+ +++++.. + . ...+.++.+++|++|+..+.
T Consensus 149 IsnpsCtt~~la~~lkpL~~~~gI~~~~~ttvha~Tg~-q~~vd~~-------~-~---~~~~~~r~~~~NiiP~~tg~- 215 (337)
T 3e5r_O 149 VSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITAT-QKTVDGP-------S-S---KDWRGGRAASFNIIPSSTGA- 215 (337)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SBSSSCC-------C-T---TCSGGGSBGGGSCEEEECCH-
T ss_pred EECCChHHHHHHHHHHHHHHhcCccccceeEEEeeccc-ccccccc-------c-c---ccccccccHhhCccccCCCc-
Confidence 99999999999999999999999999999999999998 7766631 1 0 13345678899999998641
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCC
Q 017153 246 ENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHF 322 (376)
Q Consensus 246 e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~ 322 (376)
. .|+.++++..+.+++|+|+|||++|||+.++|++|+++++.+|++++|+++ |+..++...++ ..
T Consensus 216 ----a-------~ei~kvlpel~gkl~~~a~rVP~~~g~~~~l~~~l~k~~t~eei~~~~~~a~~~~l~gil~y~~~-~~ 283 (337)
T 3e5r_O 216 ----A-------KAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEE-DL 283 (337)
T ss_dssp ----H-------HHHHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS-CC
T ss_pred ----h-------HHHHHHHHHhCCcEEEEEEEeccCCeEEEEEEEEECCCccHHHHHHHHHHHhhCCCCCcccCCCC-Ce
Confidence 3 344667887778999999999999999999999999999999999999874 44333322111 01
Q ss_pred CccccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 323 PTPLEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 323 p~~~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
-+. +..|...-.| +... .++-+.+++--|| -+|=+-+-+-.+..
T Consensus 284 vs~-d~~~~~~s~~~d~~~~~~~------~~~~~k~~~wydn-e~gys~r~~~~~~~ 332 (337)
T 3e5r_O 284 VST-DFVGDSRSSIFDAKAGIAL------NDNFVKLVAWYDN-EWGYSNRVIDLIRH 332 (337)
T ss_dssp CGG-GGTTCCCSEEEETTTCEEE------ETTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred eee-eecCCCCceEEecccCcEe------cCCEEEEEEEeCC-CcchHhHHHHHHHH
Confidence 111 2233322222 1111 1256788899999 66766666655544
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=314.97 Aligned_cols=297 Identities=15% Similarity=0.184 Sum_probs=219.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-------------CCCCcee----------eecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAGKQL----------SFQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-------------~~~g~~~----------~~~~~~~~v~-~~ 94 (376)
++||||+|+ |++|++++|+|.+|+.|+++++++.+. +..|+.. ...++.+.+. ..
T Consensus 2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~ 80 (380)
T 2d2i_A 2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR 80 (380)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence 489999999 999999999998764478999998764 4444421 1223344443 23
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCe--EEEcCCCCCCCCCCc-EEeeccCHHhhcCcccCCCCCcEEE
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSI--VVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIA 167 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~--VIDlS~~~R~~~~~~-~~lpevN~~~i~~~~~~~~~~~iVa 167 (376)
++++ |. ++|+||+|+|++.+++.+++++++|++ |||++++ +++| ..+|++|+++++.. +.+|||
T Consensus 81 dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~----d~~p~~~V~GVN~e~~~~~-----~~~IVS 151 (380)
T 2d2i_A 81 NPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK----AEGVGTYVIGVNDSEYRHE-----DFAVIS 151 (380)
T ss_dssp CGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB----SSSCEECCTTTTGGGCCTT-----TCSEEE
T ss_pred ChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCC----CCCCceEEcccCHHHhccc-----CCcEEE
Confidence 4544 42 899999999999999999999999999 9999987 3467 99999999999831 258999
Q ss_pred cCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 168 ~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||||||||++++|+||+++|||+++.++|+|++||+ ++.++.. + ...+.+|..++|++|+.++
T Consensus 152 NasCtTn~lap~lk~L~d~fgI~~g~mTTvha~Tg~-q~~vD~~-------~-----~d~r~gR~aa~NiIP~~Tg---- 214 (380)
T 2d2i_A 152 NASCTTNCLAPVAKVLHDNFGIIKGTMTTTHSYTLD-QRILDAS-------H-----RDLRRARAAAVNIVPTTTG---- 214 (380)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SCSSSCC-------C-----SSTTTTSCGGGCCEEEECC----
T ss_pred CCchHHHHHHHHHHHHHHhcCeeEEEEEEEeecccc-chhhccc-------h-----hhhhhcchHhhCeEeccCc----
Confidence 999999999999999999999999999999999999 7767632 1 1345678889999999876
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---CCcEEeeCCCCCCCCc
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASNHFPT 324 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~~v~v~~~~~~~~~p~ 324 (376)
++ +. +.|++|..+.+++++|+|||+++||+.+++++|+++++.|||+++|+++ |+..++...++ ..-+
T Consensus 215 ----aa-ka---v~kvlPeL~gkl~g~avRVPt~~gs~~dlt~~l~k~~t~eeI~~~lk~a~~~~lkgil~y~~~-~~vS 285 (380)
T 2d2i_A 215 ----AA-KA---VALVIPELKGKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDL-PLVS 285 (380)
T ss_dssp ----HH-HH---HHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECS-CCCG
T ss_pred ----hH-HH---HHhhhHhhhCcEEEEEEEeccCCEEEEEEEEEECCcCCHHHHHHHHHHHhhCCCCCccCCcCC-Ceee
Confidence 22 22 4888998888999999999999999999999999999999999999974 43333322111 0111
Q ss_pred cccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 PLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. +..|...-.|--...-.. -.++-+.+++--|| -+|=+-+-+..+..
T Consensus 286 ~-d~~~~~~ssi~d~~~~~~-~~~~~vk~~~wyDN-e~gys~r~~d~~~~ 332 (380)
T 2d2i_A 286 S-DFRGTDESSIVDSSLTLV-MDGDLVKVIAWYDN-EWGYSQRVVDLAEL 332 (380)
T ss_dssp G-GGTTCCCSEEEEGGGCEE-ETTTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred e-eeCCCCcceEEecccCce-ecCCEEEEEEEECC-CcchHhHHHHHHHH
Confidence 1 333333222210000000 01256888899999 66666666655544
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=304.48 Aligned_cols=293 Identities=14% Similarity=0.154 Sum_probs=218.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecC-------------CCC----------CceeeecCcceEEe-ec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASK-------------RSA----------GKQLSFQDKAYTVE-EL 94 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~-------------~~~----------g~~~~~~~~~~~v~-~~ 94 (376)
+||||+|+ |++|+.++|+|.++. .|+++++++... +.. |+.+.++++.+.+. ..
T Consensus 2 ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~~ 80 (335)
T 1obf_O 2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR 80 (335)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEcC
Confidence 79999999 999999999988751 268999999763 222 22333455667765 33
Q ss_pred Ccc--CCC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCc-EEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 95 TED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 95 ~~~--~~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~-~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
+++ .|. ++|+||+|+|.+.++++++.++++|++.|.+|++. ++++| +++||+|++.++. ..+|||||
T Consensus 81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps--~~dvp~~vV~gVN~~~~~~------~~~IISNa 152 (335)
T 1obf_O 81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG--GADVDATVVYGVNHGTLKS------TDTVISNA 152 (335)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC--CTTSSEECCTTTSGGGCCT------TCCEEECC
T ss_pred CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcc--cCCCCceEEccCCHHHhCc------CccEEeCC
Confidence 444 364 89999999999999999999999999877777664 33688 9999999999873 36799999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+|+|++++|+||+++|||+++.+||+|++||.+ +.+|. . ..+.++++++++|+|||+++.
T Consensus 153 sCTTn~Lap~lk~L~d~fGI~~~~mTTvha~T~~q-~~~d~-----------~-~~d~r~~r~~a~NiIP~~tGa----- 214 (335)
T 1obf_O 153 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQ-VLTDV-----------Y-HEDLRRARSATMSMIPTKTGA----- 214 (335)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTS-CSSCC-----------C-CSSTTTTSCTTTCCEEEECCH-----
T ss_pred cHHHHHHHHHHHHHHHhcCeeEEEEEEEchhhhhh-hhhcc-----------c-ccccccccchhhccccCCCcc-----
Confidence 99999999999999999999999999999999984 33431 1 124567889999999998652
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC-----C-cEEeeCCCCCCCC
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP-----G-VVVIDDRASNHFP 323 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~-----~-v~v~~~~~~~~~p 323 (376)
. .|++|++|.++++++.+|+|||+++||+.+++++|+++++.||++++|++++ + +.+.+++ .-
T Consensus 215 a-------kav~kVlP~L~gkltg~avRVPv~~~s~~dl~v~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~----~v 283 (335)
T 1obf_O 215 A-------AAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEP----LV 283 (335)
T ss_dssp H-------HHHHHHCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC----CC
T ss_pred h-------HhHhhhccccCCceEEEEEEeeccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCeecccCCc----eE
Confidence 2 2357889888889999999999999999999999999999999999999752 2 3333321 11
Q ss_pred ccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 324 TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 324 ~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+. +..|...-.|--...- .. .++-+.+++--|| -+|=+-+-+-.+..
T Consensus 284 S~-d~~~~~~ssi~d~~~~-~~-~~~~vk~~~WyDN-E~gys~r~~dl~~~ 330 (335)
T 1obf_O 284 SV-DYNHDPASSTVDASLT-KV-SGRLVKVSSWYDN-EWGFSNRMLDTTVA 330 (335)
T ss_dssp GG-GGTTCCCSEEEEGGGC-EE-ETTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred ee-eeCCCCccceeccccc-cc-cCCEEEEEEEeCC-CcchHhHHHHHHHH
Confidence 11 2233322222100000 00 1256888899999 66766666655544
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=304.13 Aligned_cols=293 Identities=14% Similarity=0.188 Sum_probs=217.4
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-------------C-C----------CceeeecCcceEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-------------S-A----------GKQLSFQDKAYTVE 92 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-------------~-~----------g~~~~~~~~~~~v~ 92 (376)
|.++||||.|. |++|+.++|++.++ |++++++++.+. + - |+.+.+.++.+.+.
T Consensus 9 ~~~~kv~INGf-GrIGr~v~ra~~~~--~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~ 85 (345)
T 2b4r_O 9 MAATKLGINGF-GRIGRLVFRAAFGR--KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVF 85 (345)
T ss_dssp --CEEEEEECC-SHHHHHHHHHHHTC--SSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEE
T ss_pred hhheEEEEeCC-chHHHHHHHHHhhC--CCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEE
Confidence 34689999998 99999999999988 999999998621 1 1 11222345566665
Q ss_pred e-cCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCe--EEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcE
Q 017153 93 E-LTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSI--VVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL 165 (376)
Q Consensus 93 ~-~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~--VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~i 165 (376)
. .+++. |. ++|+||+|+|.+.+++.++.++++|++ |||+++. +++|+++||+|++.++. ..+|
T Consensus 86 ~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~----~dvplvV~gVN~~~~~~------~~~I 155 (345)
T 2b4r_O 86 AEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK----DDTPIYVMGINHHQYDT------KQLI 155 (345)
T ss_dssp CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS----SSCCBCCTTTTGGGCCT------TCCE
T ss_pred EcCCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCC----CCCCEEEecCCHHHhCC------CCCE
Confidence 3 35444 44 899999999999999999999999995 7776654 45899999999999873 3679
Q ss_pred EEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCc
Q 017153 166 IANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVL 245 (376)
Q Consensus 166 Va~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~ 245 (376)
||||+|+|+|++++|+||+++|||+++.+||+|++||+++. +|.. +.+ ..+.++++++++|+||++++.
T Consensus 156 ISNasCTTn~Lap~lk~L~d~fGI~~~~mTTvhA~T~~q~~-~d~~-------~~~--~~d~r~~r~~a~NiIP~~tGa- 224 (345)
T 2b4r_O 156 VSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQLV-VDGP-------SKG--GKDWRAGRCALSNIIPASTGA- 224 (345)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSCS-SSCC-------CGG--GCCGGGGSCTTTCCEEEECCH-
T ss_pred EECCchHHHHHHHHHHHHHHhcCeeEEEEEEeehhhchhhh-hccc-------ccc--cCCCccccchhhccCcCCCch-
Confidence 99999999999999999999999999999999999999542 3311 000 024578899999999998662
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC-----Cc-EEeeCCCC
Q 017153 246 ENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP-----GV-VVIDDRAS 319 (376)
Q Consensus 246 e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~-----~v-~v~~~~~~ 319 (376)
. .|++|++|.++++++.+|+||||++||+.+++++|+++++.||++++|++++ +| .+.+++
T Consensus 225 ----a-------kav~kVlP~L~gkltg~avRVPv~~gs~~dltv~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~-- 291 (345)
T 2b4r_O 225 ----A-------KAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDE-- 291 (345)
T ss_dssp ----H-------HHHHHHSGGGTTTEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC--
T ss_pred ----H-------HHHHHhhhhcCCcEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCcccccCCC--
Confidence 2 2457889888889999999999999999999999999999999999999742 22 333321
Q ss_pred CCCCccccccCCCc-eEE--EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 320 NHFPTPLEVSNKDD-VAV--GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 320 ~~~p~~~~v~g~~~-v~v--g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
.-+. +..|... +-+ .--..- .++-+.+++--|| -+|=+-+-+-.+..
T Consensus 292 --~VS~-d~~~~~~ssi~d~~~~~~~----~~~~vk~~~WyDN-E~gys~r~~dl~~~ 341 (345)
T 2b4r_O 292 --VVSQ-DFVHDNRSSIFDMKAGLAL----NDNFFKLVSWYDN-EWGYSNRVLDLAVH 341 (345)
T ss_dssp --CCGG-GGTTCCCSEEEEEEEEEEE----ETTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred --ceEE-eeCCCCcccccccccCeEe----cCCEEEEEEEeCC-CcchHhHHHHHHHH
Confidence 1111 2233222 222 111100 1267889999999 66766666655544
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=299.54 Aligned_cols=293 Identities=15% Similarity=0.186 Sum_probs=218.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------------CC----------ceeeecCcceEEe-e
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------KQLSFQDKAYTVE-E 93 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------------~g----------~~~~~~~~~~~v~-~ 93 (376)
|++||||+|+ |++|+.++|.+.++ +.++++++.+.-. .| +.+.++++.+.+. +
T Consensus 3 m~~kv~INGf-GrIGr~v~R~~~~~--~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e 79 (338)
T 3lvf_P 3 MAVKVAINGF-GRIGRLAFRRIQEV--EGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSE 79 (338)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTS--TTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECC
T ss_pred ccEEEEEECC-CcHHHHHHHHHHHC--CCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEe
Confidence 3589999999 99999999999887 8899999975211 12 1223345667764 3
Q ss_pred cCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 94 LTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 94 ~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
-+++. |. ++|+||+|+|.+.+++.++.++++|++.|++|++. .+++|+++||+|++.++. ..+|||||
T Consensus 80 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps--~~d~p~vV~gVN~~~~~~------~~~IISNa 151 (338)
T 3lvf_P 80 PDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPA--TGDLKTIVFNTNHQELDG------SETVVSGA 151 (338)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC--BSSCEECCTTTTGGGCCS------CCSEEECC
T ss_pred cccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCC--CCCCCEEeccCCHHHcCc------cCCeEecC
Confidence 34443 54 89999999999999999999999999877778775 357899999999999974 57899999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCC-cccccccccccccccCCCCcCCC
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPT-CKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~-~~~~~~~~a~niiph~~~~~e~g 248 (376)
+|+|+|++++|+||+++|||+++.++|+|++||.++ .+| +...+ +.++++++++|+|||..+.
T Consensus 152 sCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~q~-~~D-----------~~~~k~d~r~~r~aa~NiIP~~tGa---- 215 (338)
T 3lvf_P 152 SCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQN-TQD-----------APHRKGDKRRARAAAENIIPNSTGA---- 215 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSC-SSS-----------CCCTTCCTTTTSCGGGCCEEEECST----
T ss_pred chhhhhhHHHHHHHHHhcCEEEEEEeeeccccchhh-hhc-----------CCccccccccchhhhceEEeCCCch----
Confidence 999999999999999999999999999999999854 233 11112 4578899999999998663
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCC-CCCHHHHHHHHHhCCC--cEEeeCCCCCCCCcc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEK-PLDEDTARDILKNAPG--VVVIDDRASNHFPTP 325 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~-~~s~~ei~~~~~~~~~--v~v~~~~~~~~~p~~ 325 (376)
.++ ..|++|.++++++.+|+|||+++||+.+++++|++ +++.||++++|++++- +.+.+++ .-+.
T Consensus 216 -aka-------v~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~~t~eei~~~lk~As~g~l~yte~~----~VS~ 283 (338)
T 3lvf_P 216 -AKA-------IGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDE----IVSS 283 (338)
T ss_dssp -TTT-------GGGTCGGGTTSEEEEEEEESCSSCEEEEEEEEESSSSCCHHHHHHHHHHTCCSSEEEECSC----CCGG
T ss_pred -HHH-------HhhhchhhcCcEEEEEEEcCCCceEEEEEEEEEccCCCCHHHHHHHHHHhhcCCcccccCC----EEeE
Confidence 322 36788888889999999999999999999999999 9999999999998642 4444332 1111
Q ss_pred ccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 326 LEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 326 ~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+..|...-.| +..... ..++-+.+++--|| -+|=+-+-+-.+..
T Consensus 284 -Df~~~~~ssi~d~~~t~~~~~---~~~~~vk~~~WYDN-E~gys~r~~dl~~~ 332 (338)
T 3lvf_P 284 -DVVGMTYGSLFDATQTRVMSV---GDRQLVKVAAWYDN-EMSYTAQLVRTLAY 332 (338)
T ss_dssp -GGTTCCCSEEEEGGGCEEEEE---TTEEEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred -eeCCCCcceEEecccceEecC---CCCCEEEEEEEECC-ccchHHHHHHHHHH
Confidence 2222221111 111110 00245777888999 56666665555544
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=317.95 Aligned_cols=236 Identities=17% Similarity=0.208 Sum_probs=187.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCce---ee---------ecCcceEEeecCcc-CC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQ---LS---------FQDKAYTVEELTED-SF 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~~---~~---------~~~~~~~v~~~~~~-~~ 99 (376)
++||||+|+ |++|++++|+|.+| |+++++++.+.+. .++. +. +...++.+.. +.+ .+
T Consensus 1 mikVgIiGa-G~iG~~l~r~L~~~--~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~-~~~~~~ 76 (337)
T 1cf2_P 1 MKAVAINGY-GTVGKRVADAIAQQ--DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAG-TVDDML 76 (337)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTS--SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCE-EHHHHH
T ss_pred CeEEEEEeE-CHHHHHHHHHHHcC--CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcC-CHHHHh
Confidence 379999999 99999999999988 9999999876541 1111 00 0001122211 112 23
Q ss_pred CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCC--cEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHH
Q 017153 100 DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENV--PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICL 177 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~--~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~ 177 (376)
.++|+||+|+|++.+++++++++++|++|||++++ ++++ |..+||+|+++++ +.++||||||||||++
T Consensus 77 ~~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~---~~d~~~~~~V~gvN~e~~~-------~~~iIanp~C~tt~l~ 146 (337)
T 1cf2_P 77 DEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE---KHEDIGLSFNSLSNYEESY-------GKDYTRVVSCNTTGLC 146 (337)
T ss_dssp HTCSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS---CHHHHSCEECHHHHGGGGT-------TCSEEEECCHHHHHHH
T ss_pred cCCCEEEECCCchhhHHHHHHHHHcCCEEEEecCC---CCccCCCeEEeeeCHHHhc-------CCCEEEcCCcHHHHHH
Confidence 58999999999999999999999999999999998 3344 8999999999998 4689999999999999
Q ss_pred HHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccccccc-CCCCcCCCchHHHHHH
Q 017153 178 MAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGYNEEEMKM 256 (376)
Q Consensus 178 l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph-~~~~~e~g~~~ee~k~ 256 (376)
++|+||+++++|+++.++++|++||.+ .+.+..++|++|+ +... . + .
T Consensus 147 ~~l~pL~~~~gI~~~~vtt~~a~s~p~-----------------------~~~~~~~~NiiP~~i~~~-~-~-------~ 194 (337)
T 1cf2_P 147 RTLKPLHDSFGIKKVRAVIVRRGADPA-----------------------QVSKGPINAIIPNPPKLP-S-H-------H 194 (337)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEESSCTT-----------------------CTTCCCSSCCEESSSSSS-C-T-------H
T ss_pred HHHHHHHHhcCcceeEEEEEEEeecCC-----------------------ccccchhcCEEeccCCCC-C-c-------c
Confidence 999999999999999999999888721 1223567899998 4331 1 1 1
Q ss_pred HHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcc
Q 017153 257 VKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP 325 (376)
Q Consensus 257 ~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~ 325 (376)
..|+.++| ++.++|+|+|||++|||+.++|++|+++++.+|++++|+++||++++++.. ..|.+
T Consensus 195 ~~ei~kil---~l~v~~t~~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~~~~~v~v~~~~~--~~~~~ 258 (337)
T 1cf2_P 195 GPDVKTVL---DINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVILISAED--GLTST 258 (337)
T ss_dssp HHHHHTTS---CCCEEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTTEEEECTTT--TCCSH
T ss_pred hHHHHhhh---eeEEEEEEEEcCccCeEEEEEEEEECCCCCHHHHHHHHHhCCCcEEecccc--CCCCC
Confidence 24678888 356999999999999999999999999999999999999999999997653 24554
|
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=296.57 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=218.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-----------------------CCceeeecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-----------------------AGKQLSFQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-----------------------~g~~~~~~~~~~~v~-~~ 94 (376)
++||||+|+ |++|+.++|.+.+++.+.++++++.+... .|+.+.++++.+.+. +-
T Consensus 2 ~~kv~INGf-GrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~ 80 (335)
T 3doc_A 2 AVRVAINGF-GRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVR 80 (335)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECCS
T ss_pred CEEEEEECC-CcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEeec
Confidence 589999999 99999999988776336899999986421 112223345667774 33
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++. |. ++|+||+|+|.+.+++.++.++++|++.|.+|++. . +++|+++||+|++.++. +.+|||||+
T Consensus 81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps-~-d~~p~vV~gVN~~~~~~------~~~IISNas 152 (335)
T 3doc_A 81 NPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPA-D-GADLTVVYGVNNDKLTK------DHLVISNAS 152 (335)
T ss_dssp STTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC-T-TCSEECCTTTTGGGCCT------TCCEEECCC
T ss_pred ccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCC-C-CCCCEEecccCHHHhCc------cCCeEecCc
Confidence 4443 64 89999999999999999999999999877777763 2 45799999999999974 468999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|++++|+||+++|||+++.++|+|++||+++ .+| + +.++.++++++++|+|||..+ +.
T Consensus 153 CTTn~Lap~lk~L~d~fGI~~g~mTTvha~T~~q~-~~D-----------~-p~kd~r~~r~aa~NiIP~~tG-----aa 214 (335)
T 3doc_A 153 CTTNCLAPVAQVLNDTIGIEKGFMTTIHSYTGDQP-TLD-----------T-MHKDLYRARAAALSMIPTSTG-----AA 214 (335)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSC-SSC-----------C-CCSSTTTTSCTTSSCEEEECC-----HH
T ss_pred hhhhhhHHhHHHHHHHcCEEEEEEEeeeeccchhh-hhc-----------C-ccccccccccCcceEecCCCc-----hH
Confidence 99999999999999999999999999999999854 233 1 113567889999999999755 23
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCC-----C-cEEeeCCCCCCCCc
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAP-----G-VVVIDDRASNHFPT 324 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~-----~-v~v~~~~~~~~~p~ 324 (376)
+ +..|++|.++++++.+|+|||+++||+.+++++|+++++.||++++|++++ + +.+.+++ .-+
T Consensus 215 k-------av~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~----~VS 283 (335)
T 3doc_A 215 K-------AVGLVLPELKGKLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEK----LVS 283 (335)
T ss_dssp H-------HHHHHSGGGTTCEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSC----CCG
T ss_pred H-------HHHHhccccCCCEEEEEEEeccccccceEEEEEECCCCCHHHHHHHHHHhhcCCcCCeeEEEcCC----eEe
Confidence 2 347789988889999999999999999999999999999999999999742 2 2333321 111
Q ss_pred cccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 PLEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. +..|...-.| +... +++-+.+++--|| -+|=+-+-+-.+..
T Consensus 284 ~-Df~~~~~ssi~d~~~t~~~------~~~~vk~~~WYDN-E~gys~r~~dl~~~ 330 (335)
T 3doc_A 284 H-DFNHDSHSSVFHTDQTKVM------DGTMVRILSWYDN-EWGFSSRMSDTAVA 330 (335)
T ss_dssp G-GGTTCCCSEEEEGGGCEEE------TTTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred e-eeCCCCCccccCchhhEEE------cCCEEEEEEEEcC-ccchHHHHHHHHHH
Confidence 1 2222222122 1111 2366888888999 56766665555543
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=296.86 Aligned_cols=287 Identities=15% Similarity=0.232 Sum_probs=217.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--------------C----------CceeeecCcceEEe-
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------------A----------GKQLSFQDKAYTVE- 92 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--------------~----------g~~~~~~~~~~~v~- 92 (376)
.++||||+|. |++|+.++|.+.++ + ++++++.++.. - |+.+.++++.+.+.
T Consensus 6 ~~~kvgInGF-GRIGrlv~R~~~~~--~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~ 81 (346)
T 3h9e_O 6 RELTVGINGF-GRIGRLVLRACMEK--G-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQ 81 (346)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHT--T-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEEC
T ss_pred CeeEEEEECC-ChHHHHHHHHHHhC--C-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEe
Confidence 4689999999 99999999998886 5 89999876421 1 22233345667775
Q ss_pred ecCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCC--eEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEE
Q 017153 93 ELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI 166 (376)
Q Consensus 93 ~~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iV 166 (376)
+.+++. |. ++|+||+|+|.+.++++++.++++|+ .|||++++ ++|+++||+|++.++.. +.+||
T Consensus 82 e~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~-----d~plvV~gVN~~~~~~~-----~~~II 151 (346)
T 3h9e_O 82 CKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP-----DAPMFVMGVNENDYNPG-----SMNIV 151 (346)
T ss_dssp CSSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCS-----SSCBCCTTTTGGGCCTT-----TCSEE
T ss_pred cCChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC-----CCCeeCcccCHHHcCcc-----cCCEE
Confidence 445554 43 89999999999999999999999999 67877764 58999999999999731 36899
Q ss_pred EcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcC
Q 017153 167 ANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLE 246 (376)
Q Consensus 167 a~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e 246 (376)
|||+|+|+|++++++||+++|||+++.++|+|++||.++- + .|.+.++.++++++++|+|||+++.
T Consensus 152 SNasCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~tQ~~-~-----------Dg~~~kd~r~~r~aa~NiIP~~tGa-- 217 (346)
T 3h9e_O 152 SNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKT-V-----------DGPSRKAWRDGRGAHQNIIPASTGA-- 217 (346)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBS-S-----------SCCCTTSGGGGSBTTTCCEEECCHH--
T ss_pred ECCcchhhhHHHHHHHHHHHhCeeEEEEeeeeeccCcccc-c-----------cCCCCCCccccccceeeeecccCch--
Confidence 9999999999999999999999999999999999998642 2 2322346789999999999998762
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---C--Cc-EEeeCCCCC
Q 017153 247 NGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---P--GV-VVIDDRASN 320 (376)
Q Consensus 247 ~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~--~v-~v~~~~~~~ 320 (376)
..+..|++|.++++++.+|+|||+++||+.+++++++++++.||++++|+++ | +| .+.+++
T Consensus 218 ----------akavgkViPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~--- 284 (346)
T 3h9e_O 218 ----------AKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDE--- 284 (346)
T ss_dssp ----------HHHHHHHSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC---
T ss_pred ----------HHhhheechhhcCcEEEEEEEcccccceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCC---
Confidence 1235788998888999999999999999999999999999999999999974 2 22 333321
Q ss_pred CCCccccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 321 HFPTPLEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 321 ~~p~~~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
.-+. +..|...-.| +... +++-+.+++--|| -+|=+-+-+-.+..
T Consensus 285 -~VS~-Df~~~~~ssi~d~~~~~~~------~~~~vk~~~WYDN-E~gys~r~~dl~~~ 334 (346)
T 3h9e_O 285 -VVST-DFLGDTHSSIFDAKAGIAL------NDNFVKLISWYDN-EYGYSHRVVDLLRY 334 (346)
T ss_dssp -CCGG-GGTTCCCSEEEETTTCEEE------ETTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred -eEee-ccCCCCCceeEcccccEEe------cCCEEEEEEEECC-CcchHHHHHHHHHH
Confidence 1111 2222222111 1111 1256788888999 56666555555543
|
| >3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=295.85 Aligned_cols=288 Identities=16% Similarity=0.226 Sum_probs=218.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC------------------CCC-------c-eeeecCcceEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------------------SAG-------K-QLSFQDKAYTVE 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~------------------~~g-------~-~~~~~~~~~~v~ 92 (376)
++||||+|+ |++|+.++|.+.++ +.++++++.+.. ..| . .+.++++.+.+.
T Consensus 3 ~~kv~INGf-GrIGr~v~R~~~~~--~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~ 79 (337)
T 3v1y_O 3 KIKIGINGF-GRIGRLVARVALQS--EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVF 79 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--SSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEE
T ss_pred ceEEEEECC-ChHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEE
Confidence 589999999 99999999999887 889999998651 112 0 223345556663
Q ss_pred -ecCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEE
Q 017153 93 -ELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIA 167 (376)
Q Consensus 93 -~~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa 167 (376)
+-+++. |. ++|+||+|+|.+.+++.++.++++|++.|++|++. .++|+++||+|++.++. +.+|||
T Consensus 80 ~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps---~d~p~vV~gVN~~~~~~------~~~IIS 150 (337)
T 3v1y_O 80 GIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS---KDAPMFVCGVNEDKYTS------DIDIVS 150 (337)
T ss_dssp CCSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCC---SSSCBCCTTTTGGGCCT------TCCEEE
T ss_pred EecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCC---CCCCeECCCCCHHHcCC------CCcEEe
Confidence 334544 53 89999999999999999999999999877777764 36899999999999974 578999
Q ss_pred cCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 168 ~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||+|+|+|++++|+||+++|||+++.++|+|++||+|+. +| +.+.++.++++++++|+||+.++.
T Consensus 151 nasCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~q~~-~D-----------g~~~kd~r~~r~~a~NiIP~~tGa--- 215 (337)
T 3v1y_O 151 NASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKT-VD-----------GPSSKDWRGGRAASFNIIPSSTGA--- 215 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCTTSBS-SS-----------CCCTTCGGGGSBGGGCCEEEECCH---
T ss_pred cCchhhhhHHHHHHHHHHhcCeEEEEEeeeeeccchhhh-cc-----------CCccccccccccccceeecCCCCh---
Confidence 999999999999999999999999999999999999763 33 211235688899999999998762
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---C--C-cEEeeCCCCCC
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---P--G-VVVIDDRASNH 321 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~--~-v~v~~~~~~~~ 321 (376)
. .|.+|++|.++++++.+|+|||+++||+.+++++|+++++.||++++|+++ | + +.+.+++
T Consensus 216 --a-------kav~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~---- 282 (337)
T 3v1y_O 216 --A-------KAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEED---- 282 (337)
T ss_dssp --H-------HHHHHHSGGGTTSEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTBTTEEEECSC----
T ss_pred --H-------HHHHHhccccCCcEEEEEEEcCCCCcEEEEEEEEECCCCcHHHHHHHHHHhccCccCCeeEEEcCC----
Confidence 2 235788998888999999999999999999999999999999999999974 2 2 2333321
Q ss_pred CCccccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 322 FPTPLEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 322 ~p~~~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
.-+. +..|...-.| +... +++-+.+++--|| -+|=+-+-+-.+..
T Consensus 283 ~VS~-Df~~~~~ssi~d~~~~~~~------~~~~vk~~~WYDN-E~gys~r~~dl~~~ 332 (337)
T 3v1y_O 283 LVST-DFVGDSRSSIFDAKAGIAL------NDNFVKLVAWYDN-EWGYSNRVIDLIRH 332 (337)
T ss_dssp CCGG-GGTTCCCSEEEETTTCEEE------ETTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred EEee-ccCCCCcceEEecccCeEE------CCCEEEEEEEECC-ccchHHHHHHHHHH
Confidence 1111 2222222111 1111 1256888888999 56766666655544
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=293.26 Aligned_cols=288 Identities=17% Similarity=0.230 Sum_probs=218.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-C-------------CC----------ceeeecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-------------AG----------KQLSFQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~-------------~g----------~~~~~~~~~~~v~-~ 93 (376)
++||||+|+ |++|+.++|.+.++ +.++++++.+.. . -| +.+.++++.+.+. +
T Consensus 1 ~~kv~INGf-GrIGr~v~R~~~~~--~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e 77 (332)
T 3pym_A 1 MVRVAINGF-GRIGRLVMRIALSR--PNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQE 77 (332)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHS--TTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECC
T ss_pred CeEEEEECC-CcHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEee
Confidence 379999999 99999999998887 789999998641 1 12 2233345667764 3
Q ss_pred cCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 94 LTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 94 ~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
-++.. |. ++|+||+|+|.+.+++.++.++++|++.|++|++. .++|+++||+|++.++. +.+|||||
T Consensus 78 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps---~d~p~vV~gVN~~~~~~------~~~IISna 148 (332)
T 3pym_A 78 RDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPS---STAPMFVMGVNEEKYTS------DLKIVSNA 148 (332)
T ss_dssp SSGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCC---SSSCBCCTTTTGGGCCT------TCCEEECC
T ss_pred cccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCC---CCCCeEeeccchhhcCc------cccEEecC
Confidence 34443 54 89999999999999999999999999877777764 35799999999999974 46899999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+|+|++++|+||+++|||+++.++|+|++||.++ .+| +...++.++++++++|+||+.++.
T Consensus 149 sCTTn~Lap~lkvL~d~fGI~~g~mTTvha~T~~Q~-~vD-----------g~~~kd~r~~r~aa~NiIP~~tGa----- 211 (332)
T 3pym_A 149 SCTTNCLAPLAKVINDAFGIEEGLMTTVHSLTATQK-TVD-----------GPSHKDWRGGRTASGNIIPSSTGA----- 211 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSC-SSS-----------CCCTTCTGGGSCGGGCCEEEECSH-----
T ss_pred cchhhhhHHHHHHHHHhcCeEEEEEEEEeeccccch-hcc-----------CCCcccCccccchhhcccCCCCCh-----
Confidence 999999999999999999999999999999999853 233 211235678899999999998762
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---C--Cc-EEeeCCCCCCCC
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---P--GV-VVIDDRASNHFP 323 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~--~v-~v~~~~~~~~~p 323 (376)
.+ |..|++|.++++++.+|+|||+++||+.+++++|+++++.||++++|+++ | +| .+.+++ .-
T Consensus 212 ak-------av~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~----~V 280 (332)
T 3pym_A 212 AK-------AVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDA----VV 280 (332)
T ss_dssp HH-------HHHHHSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSC----CC
T ss_pred HH-------HHHHhhhhhcCCEEEEEEEcCCCCcEeeEEEEEECCcCCHHHHHHHHHHhccCccCceeEEEcCC----eE
Confidence 22 34678998888999999999999999999999999999999999999974 2 22 333321 11
Q ss_pred ccccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 324 TPLEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 324 ~~~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+. +..|...-.| +... +++-+.+++--|| -+|=+-+-+-.+..
T Consensus 281 S~-Df~~~~~ssi~d~~~~~~~------~~~~vk~~~WYDN-E~gys~r~~dl~~~ 328 (332)
T 3pym_A 281 SS-DFLGDSHSSIFDASAGIQL------SPKFVKLVSWYDN-EYGYSTRVVDLVEH 328 (332)
T ss_dssp GG-GGTTCCCSEEEEGGGCEEE------ETTEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred ee-ccCCCCcceEEcccccccc------CCCEEEEEEEECC-ccchHHHHHHHHHH
Confidence 11 2222222111 1111 1256888888999 56766666655544
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=308.03 Aligned_cols=234 Identities=18% Similarity=0.204 Sum_probs=191.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-------------CCCC----------ceeeecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-------------RSAG----------KQLSFQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-------------~~~g----------~~~~~~~~~~~v~-~~ 94 (376)
++||||+|+ |++|+.++|+|.++ |+++++++... +..| +.+.+.++.+.+. +.
T Consensus 2 ~ikV~InGf-GrIGr~v~r~l~~~--~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~ 78 (342)
T 2ep7_A 2 AIKVGINGF-GRIGRSFFRASWGR--EEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQK 78 (342)
T ss_dssp -CEEEEECC-SHHHHHHHHHHTTC--TTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCS
T ss_pred ceEEEEECC-CHHHHHHHHHHHhC--CCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 489999999 99999999999988 89999999753 2233 2333345566665 34
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCc-EEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~-~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
+++. |. ++|+||+|+|.+.++++++.++++|++.|.+|++- +++| +++||+|++.++.. ..+|||||
T Consensus 79 dp~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps---~dvp~~vV~gVN~~~~~~~-----~~~IISNa 150 (342)
T 2ep7_A 79 DPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPA---KNPDITVVLGVNEEKYNPK-----EHNIISNA 150 (342)
T ss_dssp SGGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCC---BSCSEECCTTTSGGGCCTT-----TCCEEECC
T ss_pred ChhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCC---CCCCceEEcCcCHHHhccc-----CCeEEECC
Confidence 5544 44 89999999999999999999999999855566553 3588 99999999998731 35799999
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+|+|++++|+||+++|||+++.+||+|++||+++. +| +. -.+.+++|++++|+||++++.
T Consensus 151 sCTTn~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~-~d-----------~p-~~d~r~~r~~a~NiIP~~tGa----- 212 (342)
T 2ep7_A 151 SCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQRL-LD-----------LP-HKDFRRARAAAINIVPTTTGA----- 212 (342)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBS-SS-----------CC-CSSTTTTSBGGGCCEEECCCT-----
T ss_pred ChHHHHHHHHHHHHHHHcCeeEEEEEEEeecccchhh-hc-----------CC-cchhhhhhhHhhCccCCCCCh-----
Confidence 9999999999999999999999999999999998532 32 11 124566789999999998763
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCC-CCCHHHHHHHHHhC
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEK-PLDEDTARDILKNA 308 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~-~~s~~ei~~~~~~~ 308 (376)
. | ++.|++|..+++++.+|+|||+++||+.+++++|++ +++.||++++|+++
T Consensus 213 a----k---av~kVlP~L~gkltg~avRVPv~~~s~~dltv~lek~~~t~eei~~~lk~a 265 (342)
T 2ep7_A 213 A----K---AIGEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREA 265 (342)
T ss_dssp T----G---GGGGTSGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCSCHHHHHHHHHHH
T ss_pred H----H---HHHHhhhccCCCEEEEEEEecccceEEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 2 2 357889888888999999999999999999999999 99999999999975
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=296.05 Aligned_cols=289 Identities=14% Similarity=0.198 Sum_probs=212.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-----------------------CceeeecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-----------------------GKQLSFQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-----------------------g~~~~~~~~~~~v~-~~ 94 (376)
++||||+|+ |++|+.++|.+.++ +.++++++.+.... |+.+.++++.+.+. +.
T Consensus 4 ~~kv~INGf-GrIGr~v~Ra~~~~--~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~ 80 (345)
T 4dib_A 4 MTRVAINGF-GRIGRMVFRQAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNR 80 (345)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTC--SSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCS
T ss_pred cEEEEEECC-CcHHHHHHHHHHhC--CCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecC
Confidence 589999999 99999999999887 78999999864211 12233345667664 33
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
+++. |. ++|+||+|+|.+.+++.++.++++|++.|++|++. .+++|+++||+|++.++.. ..+|||||+
T Consensus 81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps--~~d~p~vV~gVN~~~~~~~-----~~~IISNaS 153 (345)
T 4dib_A 81 DPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPG--KNEDVTIVVGVNEDQLDIT-----KHTVISNAS 153 (345)
T ss_dssp CGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSCSEECCTTTTGGGCCTT-----TCSEEECCC
T ss_pred ChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCC--CCCCCEEEecCCHHHcCcc-----cCeEEECCc
Confidence 4443 54 89999999999999999999999999877777764 3578999999999999731 368999999
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|++++|+||+++|||+++.++|+|++||.++ .+|.. + .+.++++++++|+||+.++. .
T Consensus 154 CTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~-~~D~p-------~-----kd~r~~r~aa~NIIP~~tGa-----a 215 (345)
T 4dib_A 154 CTTNCLAPVVKVLDEQFGIENGLMTTVHAYTNDQK-NIDNP-------H-----KDLRRARACGQSIIPTTTGA-----A 215 (345)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEECC--------------------------CCTTSCTTTCCEEECCTH-----H
T ss_pred hhhhhhHHHHHHHHHhcCeEEEEEEeeeeccCCce-ecccc-------c-----cccccchhhhhceecCCCch-----H
Confidence 99999999999999999999999999999999853 34421 1 24578889999999998762 2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---C--C-cEEeeCCCCCCCCc
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---P--G-VVVIDDRASNHFPT 324 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~--~-v~v~~~~~~~~~p~ 324 (376)
+ |..|++|.++++++.+|+|||+++||+.+++++|+++++.||++++|+++ | + +.+.+++ .-+
T Consensus 216 k-------av~kVlPeL~gkltg~avRVPv~~~s~~dlt~~lek~~t~eei~~~lk~As~g~lkgil~yte~~----~VS 284 (345)
T 4dib_A 216 K-------ALAKVLPHLNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEP----LVS 284 (345)
T ss_dssp H-------HHHHHCGGGTTTEEEEEEECCCSSEEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSC----CCG
T ss_pred H-------HHhhhccccCCcEEEEEEEccCcccEEEEEEEEECCCCCHHHHHHHHHHhhcCcccceeeeEcCc----Eee
Confidence 2 34778998888999999999999999999999999999999999999974 2 2 2333321 111
Q ss_pred cccccCCCceEE-----EEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 325 PLEVSNKDDVAV-----GRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 325 ~~~v~g~~~v~v-----g~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
. +..|...-.| +... +++-+.+++--|| -+|=+-+-+-.+..
T Consensus 285 ~-Df~~~~~ssi~d~~~t~~~------~~~~vk~~~WYDN-E~Gys~r~~dl~~~ 331 (345)
T 4dib_A 285 I-DFNTNTHSAIIDGLSTMVM------GDRKVKVLAWYDN-EWGYSRRVVDLVTL 331 (345)
T ss_dssp G-GGTTCCCSEEEEGGGCEEE------TTTEEEEEEEEET-THHHHHHHHHHHHH
T ss_pred e-ecCCCCcchhhhhhccEEE------CCCEEEEEEEECC-CcchHHHHHHHHHH
Confidence 1 2222222122 1111 2257888888999 46655555554443
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=307.08 Aligned_cols=240 Identities=12% Similarity=0.146 Sum_probs=190.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce----------e-----------eecCcceEEeecCcc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ----------L-----------SFQDKAYTVEELTED 97 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~----------~-----------~~~~~~~~v~~~~~~ 97 (376)
++||||+|+ |++|+.++|+|.+| |+++++++++.+ ..+. . .+.+..+.+.....+
T Consensus 2 mikVgI~G~-G~IGr~v~r~l~~~--~~~evvaV~d~~-~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~ 77 (343)
T 2yyy_A 2 PAKVLINGY-GSIGKRVADAVSMQ--DDMEVIGVTKTK-PDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILD 77 (343)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHS--SSEEEEEEEESS-CSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred ceEEEEECC-CHHHHHHHHHHHhC--CCceEEEEecCC-HHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHH
Confidence 479999999 99999999999988 999999987642 2210 0 011112223221122
Q ss_pred CCCCCcEEEEcCCCchhhhhHH-HHHhCCCeEEEcCCCCCCCCCCc-EEeeccCHHhhcCcccCCCCCcEEEcCCchHHH
Q 017153 98 SFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNSSAFRMVENVP-LVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s~~~~~-~~~~~G~~VIDlS~~~R~~~~~~-~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta 175 (376)
.+.++|+||+|+|++.+.++++ .++++|++|||.++ +.++++| +++||+|+++++ +.++|+||||+|++
T Consensus 78 ~~~~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap--~~~d~vp~~vV~gvN~~~~~-------~~~iIsn~sCtT~~ 148 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGKQNLENIYKPHKVKAILQGG--EKAKDVEDNFNALWSYNRCY-------GKDYVRVVSCNTTG 148 (343)
T ss_dssp TGGGCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTT--SCGGGSSEEECTTTTHHHHT-------TCSEEEECCHHHHH
T ss_pred hccCCCEEEECCCccccHHHHHHHHHHCCCEEEECCC--ccccCCCceEEcccCHHHhc-------cCCEEeccchhhHH
Confidence 3358999999999999999996 89999999997444 3333378 999999999997 46799999999999
Q ss_pred HHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCccccccccccccccc-CCCCcCCCchHHHH
Q 017153 176 CLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSH-NAPVLENGYNEEEM 254 (376)
Q Consensus 176 ~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph-~~~~~e~g~~~ee~ 254 (376)
++++|+||++.|||+++.++|+|++||.|+ ..+..++|++|+ +.. ++|+.+
T Consensus 149 lap~lk~L~~~fgI~~~~vtT~~a~sg~~~-----------------------~~r~~~~NiiP~~i~~--~tg~~k--- 200 (343)
T 2yyy_A 149 LCRILYAINSIADIKKARIVLVRRAADPND-----------------------DKTGPVNAITPNPVTV--PSHHGP--- 200 (343)
T ss_dssp HHHHHHHHHTTSEEEEEEEEEEEESSCTTC-----------------------SSCCCSSCCEESSSSS--SCTHHH---
T ss_pred HHHHHHHHHHHcCceEEEEEeeeeccCcCc-----------------------chhhHHhcccCCCCCC--CCcchH---
Confidence 999999999999999999999999999541 123678999999 422 444433
Q ss_pred HHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcc
Q 017153 255 KMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTP 325 (376)
Q Consensus 255 k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~ 325 (376)
|.+|++|..+++++.+|+|||+++||+.+++++|+++++.+|++++|+++++++++++. ...|.+
T Consensus 201 ----~~~kilp~l~gkl~~~avRVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~v~l~~~~--~~l~s~ 265 (343)
T 2yyy_A 201 ----DVVSVVPEFEGKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAE--DGFSST 265 (343)
T ss_dssp ----HHHHHCGGGTTSEEEEEEEESCSSCEEEEEEEEEESCCCHHHHHHHHHHSTTEEEECGG--GTCCSH
T ss_pred ----HHHHhhhccccceeeEEEEecccceEEEEEEEEECCCCCHHHHHHHHHhCCCCEEeccc--cCCCCC
Confidence 45788988778899999999999999999999999999999999999999999999762 234554
|
| >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=297.92 Aligned_cols=295 Identities=13% Similarity=0.130 Sum_probs=219.2
Q ss_pred CCEEEEECcccHHHHHHHHH----HhcCCCCCeEEEEEecCC-C-------------------------------CCcee
Q 017153 39 APSVAVVGVTGAVGQEFLSV----LSDRDFPYRSIKMLASKR-S-------------------------------AGKQL 82 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~----L~~~~~p~~~l~~v~s~~-~-------------------------------~g~~~ 82 (376)
++||||+|+ |++|+.++|. +.++ +.++++++.++. . .|+.+
T Consensus 2 ~~kv~INGF-GrIGr~v~Ra~~~~~~~~--~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l 78 (359)
T 3ids_C 2 PIKVGINGF-GRIGRMVFQALCEDGLLG--TEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTL 78 (359)
T ss_dssp CEEEEEECT-THHHHHHHHHHHHTTCBT--TTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEE
T ss_pred ceEEEEECC-ChHHHHHHHHhHHHHhcC--CCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEE
Confidence 589999999 9999999999 5555 789999998731 0 22233
Q ss_pred eecCcceEEe--ecCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCc
Q 017153 83 SFQDKAYTVE--ELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGI 156 (376)
Q Consensus 83 ~~~~~~~~v~--~~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~ 156 (376)
.++++.+.+. +.+++. |. ++|+||+|+|.+.+++.++.++++|++.|++|++. ++++|+++||+|++.++..
T Consensus 79 ~inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps--~~d~p~vV~gVN~~~~~~~ 156 (359)
T 3ids_C 79 VVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA--SGGAKTLVMGVNHHEYNPS 156 (359)
T ss_dssp EETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCC--BSSCEECCTTTTGGGCCTT
T ss_pred EECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCC--CCCCCeEEeccCHHHcCCC
Confidence 3345566665 345554 43 89999999999999999999999999988888875 4578999999999999731
Q ss_pred ccCCCCCcEEEcCCchHHHHHHHHhHH-HHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccc
Q 017153 157 KVGMGKGALIANPNCSTIICLMAATPL-HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAF 235 (376)
Q Consensus 157 ~~~~~~~~iVa~PgC~~ta~~l~L~pL-~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~ 235 (376)
..+|||||+|+|+|++++++|| +++|||+++.++|+|++||.++ .+| +...++.+++|++++
T Consensus 157 -----~~~IISNaSCTTn~Lap~lkvL~~d~fGI~~g~mTTvha~T~tQ~-~vD-----------~~~~kd~r~~r~aa~ 219 (359)
T 3ids_C 157 -----EHHVVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQK-TVD-----------GVSVKDWRGGRAAAV 219 (359)
T ss_dssp -----TCSEEECCCHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSB-SSS-----------CCCTTCTGGGSBGGG
T ss_pred -----CCCEEECCchHhhhHHHhhhhhhhccCCeEEEEEeeeeeccchhh-hhc-----------CCccccccccccCcc
Confidence 3679999999999999999999 9999999999999999999853 343 111135678899999
Q ss_pred cccccCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC---C--C
Q 017153 236 NLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---P--G 310 (376)
Q Consensus 236 niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~---~--~ 310 (376)
|+|||.++. .++ ..|++|.++++++.+|+|||+++||+.+++++|+++++.||++++|+++ | +
T Consensus 220 NiIP~~tGa-----aka-------v~kVlPeL~gkltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk~A~~g~lkg 287 (359)
T 3ids_C 220 NIIPSTTGA-----AKA-------VGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKG 287 (359)
T ss_dssp CCEEEECSH-----HHH-------HHHHSGGGTTSEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTT
T ss_pred eeEccCCch-----HHH-------HhhhchhhcCceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHHHhccCccCC
Confidence 999998762 333 3577888888999999999999999999999999999999999999974 2 2
Q ss_pred -cEEeeCCCCCCCCccccccCCCceEEEEEEeccCCCC----CCeEEEEEEechHHhhHHHHHHHHHHh
Q 017153 311 -VVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDG----NHGLDIFVCGDQVRKGAALNAVQIAEM 374 (376)
Q Consensus 311 -v~v~~~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~----~~~~~~~~~~DNL~kGAAgqAvq~~nl 374 (376)
+.+.+++ .-+. +..|...-.|--...-.. -+ ++-+.+++--|| -+|=+-+-+-.+..
T Consensus 288 il~yte~~----~VS~-Df~~~~~ssi~d~~~t~~-~~~~~~~~~vk~~~WYDN-E~Gys~r~vdl~~~ 349 (359)
T 3ids_C 288 ILGYTDEE----LVSA-DFINDNRSSIYDSKATLQ-NNLPKERRFFKIVSWYDN-EWGYSHRVVDLVRH 349 (359)
T ss_dssp TEEEECSC----CCGG-GGTTCCSSEEEEHHHHHH-SSCTTCSSEEEEEEEECT-THHHHHHHHHHHHH
T ss_pred ceeEecCC----EEee-ecCCCCcceeEeccccee-ecccCCCCEEEEeEEECC-CcchHHHHHHHHHH
Confidence 2333321 1111 233333322210000000 11 367888888999 56666555555543
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=296.48 Aligned_cols=291 Identities=16% Similarity=0.224 Sum_probs=217.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-----------------------CCCceeeecCcceEEee-c
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----------------------SAGKQLSFQDKAYTVEE-L 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-----------------------~~g~~~~~~~~~~~v~~-~ 94 (376)
++||||+|+ |+||+.++|+|.++ .++++++.... +.|+.+.++++.+.+.. -
T Consensus 21 ~~kVaInGf-GrIGr~vlr~l~e~---~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~~ 96 (356)
T 3hja_A 21 SMKLAINGF-GRIGRNVFKIAFER---GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAER 96 (356)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHT---TCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECC-CHHHHHHHHHHHHC---CCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEECCEEEEEEEcC
Confidence 589999999 99999999999986 57888776431 22334445566777764 2
Q ss_pred CccC--C--CCCcEEEEcCCCchh----hhhHHHHHh-CCCe--EEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCC
Q 017153 95 TEDS--F--DGVDIALFSAGGSIS----KKFGPIAVE-KGSI--VVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG 163 (376)
Q Consensus 95 ~~~~--~--~~~DvVf~a~~~~~s----~~~~~~~~~-~G~~--VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~ 163 (376)
+++. | .++|+||+|+|.+.+ ++.++.+++ +|++ |||+++. +++|+++||+|++.++. ..
T Consensus 97 dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~----d~vp~vV~gVN~~~~~~------~~ 166 (356)
T 3hja_A 97 DPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAK----DEIKTIVLGVNDHDINS------DL 166 (356)
T ss_dssp SGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCS----SCCEECCTTTSGGGCCT------TC
T ss_pred ChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCC----CCCCEEeccCCHHHcCc------Cc
Confidence 4543 4 389999999999999 999999999 9998 7777762 46799999999999974 46
Q ss_pred cEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCC
Q 017153 164 ALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAP 243 (376)
Q Consensus 164 ~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~ 243 (376)
+|||||+|+|+|++++|+||+++|||+++.++|+|++||+++. +| + +.++.+++|.+++|+||+.++
T Consensus 167 ~IISNaSCTTn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~-~D-----------~-p~kd~r~~r~aa~NIIP~~tG 233 (356)
T 3hja_A 167 KAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRI-LD-----------L-PHSDLRRARAAALSIIPTSTG 233 (356)
T ss_dssp CEEECCCHHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBS-SS-----------C-CCSSTTTTSBTTTSCEEEECC
T ss_pred cEEECCccchhhhhHhHHHHHHhcCeEEEEEEEEEeccccccc-cc-----------C-cccccccccccccEEEcCCCc
Confidence 8999999999999999999999999999999999999999642 33 1 113567889999999999876
Q ss_pred CcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEe-CCCCCHHHHHHHHHhC---C---Cc-EEee
Q 017153 244 VLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQF-EKPLDEDTARDILKNA---P---GV-VVID 315 (376)
Q Consensus 244 ~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l-~~~~s~~ei~~~~~~~---~---~v-~v~~ 315 (376)
. . | +..|++|.++++++.+|+|||+++||+.+++++| +++++.||++++|+++ | +| .+.+
T Consensus 234 a-----a----k---av~kVlPeL~gkltg~avRVPv~~~s~~dlt~~l~ek~~t~eeI~~~lk~Aa~g~~lkgil~yte 301 (356)
T 3hja_A 234 A-----A----K---AVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTE 301 (356)
T ss_dssp T-----T----T---THHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESCTTCCHHHHHHHHHHHHHSTTTTTTEEEEC
T ss_pred h-----H----H---HHHHhccccCCcEEEEEEEcCCCccEeEEEEEEEccCCCCHHHHHHHHHHHhcCchhccccceec
Confidence 3 2 2 2467899888899999999999999999999999 9999999999999873 3 22 3332
Q ss_pred CCCCCCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhhHHHHHHHHHHhc
Q 017153 316 DRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKGAALNAVQIAEML 375 (376)
Q Consensus 316 ~~~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kGAAgqAvq~~nl~ 375 (376)
++ .-+. +..|...-.|--...- ..-+++-+.+++--|| -+|=+-+-+-.+..|
T Consensus 302 ~~----~VS~-Df~~~~~ssi~d~~~t-~~~~~~~vk~~~WYDN-E~Gys~r~vdl~~~~ 354 (356)
T 3hja_A 302 DP----IVSS-DIKGNSHSSIVDGLET-MVLENGFAKILSWYDN-EFGYSTRVVDLAQKL 354 (356)
T ss_dssp SC----CCGG-GGTTCCCSEEEEGGGC-EECSTTEEEEEEEECT-THHHHHHHHHHHHHH
T ss_pred CC----eEee-eccCCCCceEEcCcCC-EEEcCCEEEEEEEECC-ccchHHHHHHHHHHH
Confidence 21 1111 2233222222100000 0012367888899999 577666666665543
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=282.13 Aligned_cols=272 Identities=14% Similarity=0.190 Sum_probs=194.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEe-e------c---------CccC-CCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVE-E------L---------TEDS-FDG 101 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~-~------~---------~~~~-~~~ 101 (376)
+||||+|+ |++|++++|+|.+| |+++++++++++ .++.... ....+.+. + + +.++ +.+
T Consensus 2 ikVgIiGa-G~iG~~~~r~L~~~--p~~elvav~d~~-~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~ 77 (340)
T 1b7g_O 2 VNVAVNGY-GTIGKRVADAIIKQ--PDMKLVGVAKTS-PNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT 77 (340)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTC--TTEEEEEEECSS-CSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH
T ss_pred eEEEEEec-CHHHHHHHHHHHcC--CCCEEEEEEcCC-hHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC
Confidence 79999999 99999999999988 999999998754 2221000 00001111 1 0 1111 247
Q ss_pred CcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHh
Q 017153 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAAT 181 (376)
Q Consensus 102 ~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~ 181 (376)
+|+||+|+|++.++++++.++++|+++||+|+++|... .+.++|++|.+++. +.++|+|||||+||++++|+
T Consensus 78 vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~-~~~~v~~vN~~~~~-------~~~iIsnpsCtt~~l~~~lk 149 (340)
T 1b7g_O 78 SDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVA-DISFSALCNYNEAL-------GKKYIRVVSCNTTALLRTIC 149 (340)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGS-SCEECHHHHHHHHT-------TCSEEEECCHHHHHHHHHHH
T ss_pred CCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCC-CCEEEcCcchHHHc-------CCCCcccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999998432 36899999988776 45699999999999999999
Q ss_pred HHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHHHHHH
Q 017153 182 PLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261 (376)
Q Consensus 182 pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~ 261 (376)
||+++|||+++.++|+|++..-+ . . .+....|++|....++ .| ...|+.
T Consensus 150 ~L~~~~gI~~~~~tt~~~~~~~~---~-----------------~---~~~~~~niip~~~~i~-t~-------~a~ev~ 198 (340)
T 1b7g_O 150 TVNKVSKVEKVRATIVRRAADQK---E-----------------V---KKGPINSLVPDPATVP-SH-------HAKDVN 198 (340)
T ss_dssp HHHTTSCEEEEEEEEEEESSCTT---C-----------------C---SCCCSSCCEESSSSSS-CT-------HHHHHH
T ss_pred HHHHhCCeEEEEEEEEeccCCcc---c-----------------c---hHHHHcCCCCCCcCCC-CC-------chhHHH
Confidence 99999999999999999654210 0 0 0112345554211111 01 123567
Q ss_pred HHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccccc------cCC---C
Q 017153 262 KIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEV------SNK---D 332 (376)
Q Consensus 262 ~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v------~g~---~ 332 (376)
++++. ++++++|+|||+++||+.+++++++++++.+|++++|+++|+|++++.. ...|+|... .|- +
T Consensus 199 ~vlp~--l~l~~~a~rVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~v~l~~~~--~~l~s~~~~~~~~~~~~rp~~~ 274 (340)
T 1b7g_O 199 SVIRN--LDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSK--YDAEATAELVEVARDLKRDRND 274 (340)
T ss_dssp TTSTT--CEEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTTEEEECSS--SSCCSHHHHHHHHHHTTCGGGC
T ss_pred HhCCC--CcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHcCCCCEeeccc--cCCCChhHhhhhhhhcCCCccc
Confidence 78864 5699999999999999999999999999999999999999999999753 235655311 111 2
Q ss_pred ceEEEEEEeccCCCCCCeEEEEEEech
Q 017153 333 DVAVGRIRRDVSQDGNHGLDIFVCGDQ 359 (376)
Q Consensus 333 ~v~vg~~~~~~~~~~~~~~~~~~~~DN 359 (376)
...+.... |...-.++.+.++-++||
T Consensus 275 ~~~~~~~~-~~~~~~~~~~~~~~~~~q 300 (340)
T 1b7g_O 275 IPEVMIFS-DSIYVKDDEVMLMYAVHQ 300 (340)
T ss_dssp CCSEEEEG-GGCEEETTEEEEEEEECT
T ss_pred chheeeeh-hheEEcCCEEEEEEecCc
Confidence 22333332 322223367888888875
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=245.84 Aligned_cols=227 Identities=15% Similarity=0.213 Sum_probs=179.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceeeecC-c---------------ceEEeecCccC-C
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQD-K---------------AYTVEELTEDS-F 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~~~~-~---------------~~~v~~~~~~~-~ 99 (376)
++||||+|+ |++|+++++.|.++ |+++++++++++. .++.....+ . .+.+.. +.++ +
T Consensus 2 ~irVgIiG~-G~iG~~~~r~l~~~--~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~-d~~~l~ 77 (334)
T 2czc_A 2 KVKVGVNGY-GTIGKRVAYAVTKQ--DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAG-TLNDLL 77 (334)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSC-BHHHHH
T ss_pred CcEEEEEeE-hHHHHHHHHHHhcC--CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcC-cHHHhc
Confidence 489999998 99999999999988 9999999987531 111110000 0 011111 2222 3
Q ss_pred CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCC-C-cEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHH
Q 017153 100 DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-V-PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICL 177 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~-~-~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~ 177 (376)
.++|+||+|+|++.+.++++.++++|++|| +++++ +.+ . +..+|++|+++++ +.++|+||||++++++
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi-~sap~--~~d~~~~~~v~~vn~~~~~-------~~~ii~~~~C~t~~l~ 147 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLYEKAGVKAI-FQGGE--KADVAEVSFVAQANYEAAL-------GKNYVRVVSCNTTGLV 147 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHHHHHTCEEE-ECTTS--CGGGSSEEECHHHHGGGGT-------TCSEEEECCHHHHHHH
T ss_pred cCCCEEEECCCccccHHHHHHHHHcCCceE-eeccc--ccccccceEEeccCHHHHh-------hCCcEEecCcHHHHHH
Confidence 589999999999999999999999999999 56654 223 3 5889999999887 4679999999999999
Q ss_pred HHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCchHHHHHHH
Q 017153 178 MAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMV 257 (376)
Q Consensus 178 l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~ 257 (376)
+++++|++. |++..++++|++||.++ +++..++|++|++ . .++|+.
T Consensus 148 P~~~~l~~~--I~~g~i~ti~a~s~~~~-----------------------~~r~~~~niiP~i-~-~~~g~~------- 193 (334)
T 2czc_A 148 RTLSAIREY--ADYVYAVMIRRAADPND-----------------------TKRGPINAIKPTV-E-VPSHHG------- 193 (334)
T ss_dssp HHHHHHGGG--EEEEEEEEEEESSCTTC-----------------------CSCCCSSCCEECC-S-SSCTHH-------
T ss_pred HHHHHHHHH--hccccEEEEEEecCccc-----------------------cccChhhcEEecc-C-CCCchh-------
Confidence 999999775 99999999999999742 2345679999995 2 244433
Q ss_pred HHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeC
Q 017153 258 KETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDD 316 (376)
Q Consensus 258 ~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~ 316 (376)
.|+.++++ +.++.+|+|||+++||+.+++++++++++.+|++++|++++.+.+++.
T Consensus 194 ~~i~~~l~---l~l~~~~~rVPv~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~ 249 (334)
T 2czc_A 194 PDVQTVIP---INIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEK 249 (334)
T ss_dssp HHHTTTSC---CCEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTTEEEECG
T ss_pred hhhheEEE---EEEEEEEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHhccCCEeecc
Confidence 34677776 459999999999999999999999999999999999999999999865
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-18 Score=164.02 Aligned_cols=238 Identities=17% Similarity=0.230 Sum_probs=163.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhc-CCCCCeEEEEEecCCCC--CceeeecCcceEEeecCccC------CCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSA--GKQLSFQDKAYTVEELTEDS------FDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~-~~~p~~~l~~v~s~~~~--g~~~~~~~~~~~v~~~~~~~------~~~~DvVf~a~ 109 (376)
++||||+|+ |++|+.+++.|.+ + |.++++++++++.. ++.+.... .......+.++ +.++|+||+|+
T Consensus 4 ~irVaIIG~-G~iG~~~~~~l~~~~--~~~elvav~d~~~~~~~~~~a~~~-g~~~~~~~~e~ll~~~~~~~iDvV~~at 79 (312)
T 1nvm_B 4 KLKVAIIGS-GNIGTDLMIKVLRNA--KYLEMGAMVGIDAASDGLARAQRM-GVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (312)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHC--SSEEEEEEECSCTTCHHHHHHHHT-TCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCEEEEEcC-cHHHHHHHHHHHhhC--cCeEEEEEEeCChhhhHHHHHHHc-CCCcccCCHHHHHhccCCCCCcEEEECC
Confidence 589999995 9999999999966 5 99999999876532 33332110 11111111111 35789999999
Q ss_pred CCchhhhhHHHHHhC--CCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhC
Q 017153 110 GGSISKKFGPIAVEK--GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRA 187 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~--G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~ 187 (376)
|+..+.+++.+++++ |+.|||.++.++ .||++|++|.+++... .+.+++++|||....++.++.++++..
T Consensus 80 p~~~h~~~a~~al~a~~Gk~Vi~ekp~~~----g~~~~p~v~~~~~~~~----~~~~lva~~g~~~ipl~~a~~~~~~~~ 151 (312)
T 1nvm_B 80 SASAHVQNEALLRQAKPGIRLIDLTPAAI----GPYCVPVVNLEEHLGK----LNVNMVTCGGQATIPMVAAVSRVAKVH 151 (312)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEECSTTCS----SCBCCHHHHTTTTTTC----SEEECCCHHHHHHHHHHHHHHTTSCEE
T ss_pred ChHHHHHHHHHHHHhCCCCEEEEcCcccc----cccccCccCHHHHHhc----cCCcEEEeCCcccchHHHHhhhhccch
Confidence 999999999999999 999999999985 4899999998876421 124688999998777666665554321
Q ss_pred CCcEEEEEEEcccc-ccC-hHhHHHHHHHhh-------------hhhcCCCCCcccccccccccccccCCCCcCCCchHH
Q 017153 188 KVTRMVVSTYQAAS-GAG-AAAMEELELQTR-------------EVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE 252 (376)
Q Consensus 188 ~i~~v~v~t~~gvS-GaG-r~~~~~l~~q~~-------------~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~~e 252 (376)
..+ +++++++.| |.| +..++++.+++. ..+.+.|.....+.++..|+++| .+.++++.++
T Consensus 152 -~~~-iv~~i~sgs~G~~~~~~l~e~~~~~~~ai~~~gg~~~~k~il~~~p~~~p~~~~~tv~~~~~---~~~~~~~~~~ 226 (312)
T 1nvm_B 152 -YAE-IVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSA---AADQAAVAAS 226 (312)
T ss_dssp -EEE-EEEEEEGGGSCHHHHTCHHHHHHHHHHHHHHTTCCSSEEEEEEEECCSSCCCEEEEEEEEES---SCCHHHHHHH
T ss_pred -hHh-HhhhhhccccCCCcccchhhHHHHHHHHHHHhhhccCCCcEEEEecCCCCcccceeEEEEeC---CCCHHHHHHH
Confidence 112 578888777 343 223577765543 12222233344445668899988 3356688999
Q ss_pred HHHHHHHHHHHhCCCCC--cEEEE------EEEeccc---ceeEeeEEEEeC
Q 017153 253 EMKMVKETRKIWNDKDV--RVTAT------CIRVPVM---RAHAESVNLQFE 293 (376)
Q Consensus 253 e~k~~~e~~~il~~~~~--~v~~t------~~~VPv~---rG~~~ti~v~l~ 293 (376)
|++++.|++++++...+ ...|. ++.+|-+ .|...+++++.+
T Consensus 227 ~~~m~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (312)
T 1nvm_B 227 VAEMVQAVQAYVPGYRLKQQVQFDVIPESAPLNIPGLGRFSGLKTSVFLEVE 278 (312)
T ss_dssp HHHHHHHHHTTCTTEEESSCCEEEEECTTSCEEETTTEEECEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCceEEeccCCCcccccCccccCCCEEEEEEEEe
Confidence 99999999999986443 34455 5667754 488888888876
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.54 E-value=9.4e-08 Score=90.39 Aligned_cols=94 Identities=11% Similarity=0.136 Sum_probs=69.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeeec---CcceEEeecCccC-CCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSFQ---DKAYTVEELTEDS-FDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~~---~~~~~v~~~~~~~-~~~~DvVf~a~~~ 111 (376)
++||+|+||+|++|+.+++.+.++ |+++++++.+++. .|+..... ...+.+.. +.++ +.++|+||+++++
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~--~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~-dl~~ll~~~DVVIDfT~p 83 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAA--PDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTD-DIERVCAEADYLIDFTLP 83 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHC--TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBC-CHHHHHHHCSEEEECSCH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEEecCcccccccHHHHhCCCCCceecC-CHHHHhcCCCEEEEcCCH
Confidence 589999999999999999999988 9999999876542 34332210 01222221 2222 3578999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
..+.+++..++++|+.+|-.+.-|
T Consensus 84 ~a~~~~~~~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 84 EGTLVHLDAALRHDVKLVIGTTGF 107 (272)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC
Confidence 999999999999999998755443
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.3e-07 Score=85.83 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=64.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+++||||+|+ |.+|+.+++.|.++ |+++++++.+++..-... .+.....+.+ ..+..++|+||.|+|+....++
T Consensus 8 ~~irv~IIG~-G~iG~~~~~~l~~~--~~~elvav~d~~~~~~~~-~g~~~~~~~~--l~~~~~~DvViiatp~~~h~~~ 81 (304)
T 3bio_A 8 KKIRAAIVGY-GNIGRYALQALREA--PDFEIAGIVRRNPAEVPF-ELQPFRVVSD--IEQLESVDVALVCSPSREVERT 81 (304)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHC--TTEEEEEEECC--------CCTTSCEESS--GGGSSSCCEEEECSCHHHHHHH
T ss_pred CCCEEEEECC-hHHHHHHHHHHhcC--CCCEEEEEEcCCHHHHHH-cCCCcCCHHH--HHhCCCCCEEEECCCchhhHHH
Confidence 4689999998 99999999999887 899999887654221110 1111001111 1223689999999999999999
Q ss_pred HHHHHhCCCeEEEcCC
Q 017153 118 GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~ 133 (376)
+.+++++|+.|||.++
T Consensus 82 ~~~al~aG~~Vi~ekP 97 (304)
T 3bio_A 82 ALEILKKGICTADSFD 97 (304)
T ss_dssp HHHHHTTTCEEEECCC
T ss_pred HHHHHHcCCeEEECCC
Confidence 9999999999998643
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.9e-07 Score=84.04 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=67.9
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---Cceeee----cCcceEEeecCc-cCCCCCcEEEEc
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQLSF----QDKAYTVEELTE-DSFDGVDIALFS 108 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---g~~~~~----~~~~~~v~~~~~-~~~~~~DvVf~a 108 (376)
+++|||+|+|+||.+|+.+++.+.++ |.++++++.++... |+.... ....+.+.. +. +.+.++|+|+++
T Consensus 3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~--~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~-dl~~~l~~~DvVIDf 79 (273)
T 1dih_A 3 DANIRVAIAGAGGRMGRQLIQAALAL--EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQS-SLDAVKDDFDVFIDF 79 (273)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHS--TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEES-CSTTTTTSCSEEEEC
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecC-CHHHHhcCCCEEEEc
Confidence 45689999999999999999988877 88999977654321 332211 001222221 22 234689999988
Q ss_pred CCCchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+......+++..++++|+.+|--+..|
T Consensus 80 t~p~~~~~~~~~a~~~G~~vVigTtG~ 106 (273)
T 1dih_A 80 TRPEGTLNHLAFCRQHGKGMVIGTTGF 106 (273)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECCCCC
T ss_pred CChHHHHHHHHHHHhCCCCEEEECCCC
Confidence 888888899999999999988655433
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=70.62 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=63.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecC---cc----CCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~ 110 (376)
+++|+|+|+ |++|+.+++.|..+ ...++.++. ++.. -+.+. ...+.....+ .+ .+.++|+||.|+|
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~--g~~~v~~~~-r~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTS--SNYSVTVAD-HDLAALAVLN--RMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHC--SSEEEEEEE-SCHHHHHHHH--TTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhC--CCceEEEEe-CCHHHHHHHH--hCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 479999999 99999999999887 446766544 3211 01111 0112222212 11 2468999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
..........+.+.|++++|++++.
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~~~~~ 103 (118)
T 3ic5_A 79 FFLTPIIAKAAKAAGAHYFDLTEDV 103 (118)
T ss_dssp GGGHHHHHHHHHHTTCEEECCCSCH
T ss_pred chhhHHHHHHHHHhCCCEEEecCcH
Confidence 9988888888899999999998764
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.30 E-value=8e-07 Score=84.54 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=70.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeee--c--CcceEEeecCccC-CCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF--Q--DKAYTVEELTEDS-FDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~--~--~~~~~v~~~~~~~-~~~~DvVf~a~~ 110 (376)
++||+|+||+|.+|+.+++.+.++ |+++|+++..++. .|+.... + ...+.+.. +.++ +.++|+|+++++
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~--~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~-dl~~ll~~aDVvIDFT~ 97 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR--KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITD-DPESAFSNTEGILDFSQ 97 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC--SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBS-CHHHHTTSCSEEEECSC
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccccchHHhhccCcCCceeeC-CHHHHhcCCCEEEEcCC
Confidence 589999999999999999999987 9999999876542 3443322 0 11222221 2222 468999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.....+++..++++|+.+|-.+.-|
T Consensus 98 p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 98 PQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC
Confidence 9999999999999999999765444
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=4.7e-06 Score=80.28 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKK 116 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~~ 116 (376)
+++||+|+|+ |.+|+.+++.|.++ |.++++++.+++... .+. ..+.+.. +.+++ .++|+||+|+|+....+
T Consensus 2 ~~irV~IiG~-G~mG~~~~~~l~~~--~~~elvav~d~~~~~-~~~---~gv~~~~-d~~~ll~~~DvViiatp~~~h~~ 73 (320)
T 1f06_A 2 TNIRVAIVGY-GNLGRSVEKLIAKQ--PDMDLVGIFSRRATL-DTK---TPVFDVA-DVDKHADDVDVLFLCMGSATDIP 73 (320)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTC--SSEEEEEEEESSSCC-SSS---SCEEEGG-GGGGTTTTCSEEEECSCTTTHHH
T ss_pred CCCEEEEEee-cHHHHHHHHHHhcC--CCCEEEEEEcCCHHH-hhc---CCCceeC-CHHHHhcCCCEEEEcCCcHHHHH
Confidence 4689999997 99999999999887 899999887665332 221 1122221 22333 68999999999998888
Q ss_pred hHHHHHhCCCeEEEcCC
Q 017153 117 FGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~ 133 (376)
.+..++++|..||+...
T Consensus 74 ~~~~al~aG~~Vv~ekp 90 (320)
T 1f06_A 74 EQAPKFAQFACTVDTYD 90 (320)
T ss_dssp HHHHHHTTTSEEECCCC
T ss_pred HHHHHHHCCCEEEECCC
Confidence 88899999999997554
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.5e-06 Score=83.87 Aligned_cols=145 Identities=10% Similarity=0.070 Sum_probs=88.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCe--EEEEEecCCC-CCceeeec-----CcceEEeecCc---cC----CC--CC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR--SIKMLASKRS-AGKQLSFQ-----DKAYTVEELTE---DS----FD--GV 102 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~--~l~~v~s~~~-~g~~~~~~-----~~~~~v~~~~~---~~----~~--~~ 102 (376)
+||+|+|| |++|+.+++.|.++ +.+ ++. +++++. ..+.+... ...+.....|. ++ +. ++
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~--g~~~~~V~-v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~ 77 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMN--REVFSHIT-LASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKP 77 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTC--TTTCCEEE-EEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhC--CCCceEEE-EEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCC
Confidence 68999999 99999999999987 653 554 444432 11111110 01233222221 11 23 38
Q ss_pred cEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEee--ccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHH
Q 017153 103 DIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIP--EVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (376)
Q Consensus 103 DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lp--evN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L 180 (376)
|+||.|+|.......+...+++|+.+||++. ++..+..++... .--.+..+. .+..++.++||.+....+..
T Consensus 78 DvVin~ag~~~~~~v~~a~l~~g~~vvD~a~-~~~~~~~~~~~~~~~~l~~~a~~-----aG~~~i~g~G~~PG~~~l~a 151 (405)
T 4ina_A 78 QIVLNIALPYQDLTIMEACLRTGVPYLDTAN-YEHPDLAKFEYKEQWAFHDRYKE-----KGVMALLGSGFDPGVTNVFC 151 (405)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHTCCEEESSC-CBCTTCSCBCSHHHHTTHHHHHH-----HTCEEEECCBTTTBHHHHHH
T ss_pred CEEEECCCcccChHHHHHHHHhCCCEEEecC-CCCcccchhhhHHHHHHHHHHHH-----hCCEEEEcCCCCccHHHHHH
Confidence 9999999998888888888899999999654 442211112110 011122221 15678999999999888888
Q ss_pred hHHHHh-CC-CcEEEE
Q 017153 181 TPLHRR-AK-VTRMVV 194 (376)
Q Consensus 181 ~pL~~~-~~-i~~v~v 194 (376)
.++.++ ++ ++.+.+
T Consensus 152 ~~~~~~~~~~i~~i~i 167 (405)
T 4ina_A 152 AYAQKHYFDEIHEIDI 167 (405)
T ss_dssp HHHHHHTCSEEEEEEE
T ss_pred HHHHHhccCcccEEEE
Confidence 888775 33 445555
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-06 Score=82.82 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=63.4
Q ss_pred cCCCCCCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEc
Q 017153 33 MSYQESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFS 108 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a 108 (376)
|+|.++++||||||+ |.+|+. .++.|..+ |.++++++++++.. ..........+.. +.++ + .++|+|+.|
T Consensus 1 M~~~~~~~rvgiiG~-G~~g~~~~~~~l~~~--~~~~l~av~d~~~~--~~~~~~~~~~~~~-~~~~ll~~~~~D~V~i~ 74 (364)
T 3e82_A 1 MSLSNNTINIALIGY-GFVGKTFHAPLIRSV--PGLNLAFVASRDEE--KVKRDLPDVTVIA-SPEAAVQHPDVDLVVIA 74 (364)
T ss_dssp ------CEEEEEECC-SHHHHHTHHHHHHTS--TTEEEEEEECSCHH--HHHHHCTTSEEES-CHHHHHTCTTCSEEEEC
T ss_pred CCCCCCcceEEEECC-CHHHHHHHHHHHhhC--CCeEEEEEEcCCHH--HHHhhCCCCcEEC-CHHHHhcCCCCCEEEEe
Confidence 445556799999998 999997 78888877 89999999876531 1111111122221 2222 2 379999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEE
Q 017153 109 AGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VID 130 (376)
+|+....+++.+++++|+.|+-
T Consensus 75 tp~~~H~~~~~~al~aGk~Vl~ 96 (364)
T 3e82_A 75 SPNATHAPLARLALNAGKHVVV 96 (364)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEE
T ss_pred CChHHHHHHHHHHHHCCCcEEE
Confidence 9999999999999999999884
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-06 Score=83.50 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=60.2
Q ss_pred CCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC----CCCCcEEEEcC
Q 017153 34 SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS----FDGVDIALFSA 109 (376)
Q Consensus 34 ~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~----~~~~DvVf~a~ 109 (376)
+|.+++|||.|+|| |++|+.+++.|.++ ..+.+..+..+ ... .+......+.+...+.+. +.++|+|+.|+
T Consensus 11 ~~~g~~mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~-~~~-~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 11 HIEGRHMKVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNE-NLE-KVKEFATPLKVDASNFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp -----CCEEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHH-HHH-HHTTTSEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred cccCCccEEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHH-HHH-HHhccCCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence 34466899999999 99999999999765 44433221111 000 010011111111112222 37899999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
|.......++.++++|+.+||+|..
T Consensus 86 p~~~~~~v~~~~~~~g~~yvD~s~~ 110 (365)
T 3abi_A 86 PGFLGFKSIKAAIKSKVDMVDVSFM 110 (365)
T ss_dssp CGGGHHHHHHHHHHHTCEEEECCCC
T ss_pred CCcccchHHHHHHhcCcceEeeecc
Confidence 9999999999999999999999854
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.5e-06 Score=80.30 Aligned_cols=88 Identities=13% Similarity=0.132 Sum_probs=62.6
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceE-EeecCccC-C--CCCcEEEEcCCC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYT-VEELTEDS-F--DGVDIALFSAGG 111 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~-v~~~~~~~-~--~~~DvVf~a~~~ 111 (376)
|+++||||||+ |.+|+.+++.|... |.++++++.+++.. .+.+.... .+. ... +.++ + .++|+|+.|+|+
T Consensus 3 m~~~rigiiG~-G~ig~~~~~~l~~~--~~~~~~av~d~~~~~~~~~a~~~-~~~~~~~-~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 3 LSKVRYGVVST-AKVAPRFIEGVRLA--GNGEVVAVSSRTLESAQAFANKY-HLPKAYD-KLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp --CEEEEEEBC-CTTHHHHHHHHHHH--CSEEEEEEECSCSSTTCC---CC-CCSCEES-CHHHHHTCTTCCEEEECSCG
T ss_pred CCceEEEEEec-hHHHHHHHHHHHhC--CCcEEEEEEcCCHHHHHHHHHHc-CCCcccC-CHHHHhcCCCCCEEEECCCc
Confidence 34689999998 99999999999877 88999998876432 22222111 111 111 2222 2 379999999999
Q ss_pred chhhhhHHHHHhCCCeEE
Q 017153 112 SISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VI 129 (376)
....+++.+++++|..|+
T Consensus 78 ~~h~~~~~~al~aGk~Vl 95 (329)
T 3evn_A 78 QDHYKVAKAALLAGKHVL 95 (329)
T ss_dssp GGHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 999999999999998877
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.4e-06 Score=83.15 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=63.1
Q ss_pred cccccccccccccccCCCCCCCceeeeccCCCCCCCEEEEECcccHHHH-HHHHHHhcCCCCCeEEEEEecCCCC-Ccee
Q 017153 5 SSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSA-GKQL 82 (376)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~-eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~ 82 (376)
|||....|--+.-|.+.+... +|+++||||||+ |.+|+ .+++.|... |.++++++.+++.. .+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~----------~m~~~rigiIG~-G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~ 69 (350)
T 3rc1_A 3 SSHHHHHHENLYFQGHMENPA----------NANPIRVGVIGC-ADIAWRRALPALEAE--PLTEVTAIASRRWDRAKRF 69 (350)
T ss_dssp ---------------------------------CCEEEEEESC-CHHHHHTHHHHHHHC--TTEEEEEEEESSHHHHHHH
T ss_pred CccccccccceeeeccCCCCC----------CCCceEEEEEcC-cHHHHHHHHHHHHhC--CCeEEEEEEcCCHHHHHHH
Confidence 566655554444444433322 234699999998 99998 789999887 89999998876421 1111
Q ss_pred eecCcceEEeecCccC-C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 83 SFQDKAYTVEELTEDS-F--DGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 83 ~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
... -.+... .+.++ + .++|+|+.|+|+....+++.+++++|..|+
T Consensus 70 a~~-~g~~~~-~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl 117 (350)
T 3rc1_A 70 TER-FGGEPV-EGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVL 117 (350)
T ss_dssp HHH-HCSEEE-ESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHHTTCEEE
T ss_pred HHH-cCCCCc-CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHCCCcEE
Confidence 110 012222 12222 2 368999999999999999999999999876
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.04 E-value=8.4e-06 Score=79.53 Aligned_cols=87 Identities=13% Similarity=0.164 Sum_probs=64.2
Q ss_pred CCCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCc
Q 017153 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGS 112 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~ 112 (376)
|+++||||||+ |.+|+. .++.|..+ |.++++++++++.. + .........+.. +.++ + .++|+|+.|+|+.
T Consensus 3 ~~~~rvgiiG~-G~~g~~~~~~~l~~~--~~~~l~av~d~~~~-~-~~~~~~~~~~~~-~~~~ll~~~~vD~V~i~tp~~ 76 (362)
T 3fhl_A 3 LEIIKTGLAAF-GMSGQVFHAPFISTN--PHFELYKIVERSKE-L-SKERYPQASIVR-SFKELTEDPEIDLIVVNTPDN 76 (362)
T ss_dssp CCCEEEEESCC-SHHHHHTTHHHHHHC--TTEEEEEEECSSCC-G-GGTTCTTSEEES-CSHHHHTCTTCCEEEECSCGG
T ss_pred CCceEEEEECC-CHHHHHHHHHHHhhC--CCeEEEEEEcCCHH-H-HHHhCCCCceEC-CHHHHhcCCCCCEEEEeCChH
Confidence 45699999998 999997 78888877 89999999876532 1 211111223322 2222 2 3699999999999
Q ss_pred hhhhhHHHHHhCCCeEE
Q 017153 113 ISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VI 129 (376)
...+++.+++++|+.|+
T Consensus 77 ~H~~~~~~al~aGkhVl 93 (362)
T 3fhl_A 77 THYEYAGMALEAGKNVV 93 (362)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 99999999999999887
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.03 E-value=7.4e-06 Score=79.85 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=64.3
Q ss_pred CCCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCc
Q 017153 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGS 112 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~ 112 (376)
|+++||||||+ |.+|+. .++.|..+ |.++++++.+++.. + .........+.. +.++ + .++|+|+.|+|+.
T Consensus 3 m~~~rvgiiG~-G~~g~~~~~~~l~~~--~~~~l~av~d~~~~-~-~~~~~~~~~~~~-~~~~ll~~~~vD~V~i~tp~~ 76 (358)
T 3gdo_A 3 LDTIKVGILGY-GLSGSVFHGPLLDVL--DEYQISKIMTSRTE-E-VKRDFPDAEVVH-ELEEITNDPAIELVIVTTPSG 76 (358)
T ss_dssp TTCEEEEEECC-SHHHHHTTHHHHTTC--TTEEEEEEECSCHH-H-HHHHCTTSEEES-STHHHHTCTTCCEEEECSCTT
T ss_pred CCcceEEEEcc-CHHHHHHHHHHHhhC--CCeEEEEEEcCCHH-H-HHhhCCCCceEC-CHHHHhcCCCCCEEEEcCCcH
Confidence 35699999998 999997 78888776 89999999876531 1 111111223322 2222 2 3799999999999
Q ss_pred hhhhhHHHHHhCCCeEEE
Q 017153 113 ISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VID 130 (376)
...+++.+++++|+.|+-
T Consensus 77 ~H~~~~~~al~aGkhVl~ 94 (358)
T 3gdo_A 77 LHYEHTMACIQAGKHVVM 94 (358)
T ss_dssp THHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCeEEE
Confidence 999999999999998873
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=76.75 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=65.7
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcC-CCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC---CCCcEEEEc
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF---DGVDIALFS 108 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~-~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~---~~~DvVf~a 108 (376)
|+.+++++||||+|+ |.+|+..++.|... ..+.++++++.+++...+.. .+.. .+.+++ .++|+|+.|
T Consensus 1 M~~~~~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~-----g~~~--~~~~ell~~~~vD~V~i~ 72 (294)
T 1lc0_A 1 MITNSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLD-----EVRQ--ISLEDALRSQEIDVAYIC 72 (294)
T ss_dssp CCCCCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEET-----TEEB--CCHHHHHHCSSEEEEEEC
T ss_pred CCCCCCcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHHHHHc-----CCCC--CCHHHHhcCCCCCEEEEe
Confidence 444556799999998 99999999988751 02789999998875433211 1221 233332 379999999
Q ss_pred CCCchhhhhHHHHHhCCCeEE
Q 017153 109 AGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VI 129 (376)
+|+....+++.+++++|..|+
T Consensus 73 tp~~~H~~~~~~al~aGkhVl 93 (294)
T 1lc0_A 73 SESSSHEDYIRQFLQAGKHVL 93 (294)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred CCcHhHHHHHHHHHHCCCcEE
Confidence 999999999999999999876
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.99 E-value=8e-06 Score=79.69 Aligned_cols=89 Identities=20% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCC---CCCcEEEEcCCC
Q 017153 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSF---DGVDIALFSAGG 111 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~---~~~DvVf~a~~~ 111 (376)
|+++||||||+ |.+|+. +++.|... |.++++++++++.. .+.+........+.. +.+++ .++|+|+.|+|+
T Consensus 3 M~~~rigiIG~-G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~~~~~~~~~~-~~~~ll~~~~vD~V~i~tp~ 78 (359)
T 3m2t_A 3 LSLIKVGLVGI-GAQMQENLLPSLLQM--QDIRIVAACDSDLERARRVHRFISDIPVLD-NVPAMLNQVPLDAVVMAGPP 78 (359)
T ss_dssp CCCEEEEEECC-SHHHHHTHHHHHHTC--TTEEEEEEECSSHHHHGGGGGTSCSCCEES-SHHHHHHHSCCSEEEECSCH
T ss_pred CCcceEEEECC-CHHHHHHHHHHHHhC--CCcEEEEEEcCCHHHHHHHHHhcCCCcccC-CHHHHhcCCCCCEEEEcCCc
Confidence 45689999998 999986 88999887 89999999876421 111111111112221 22222 478999999999
Q ss_pred chhhhhHHHHHhCCCeEE
Q 017153 112 SISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VI 129 (376)
....+++.+++++|+.|+
T Consensus 79 ~~H~~~~~~al~aGkhVl 96 (359)
T 3m2t_A 79 QLHFEMGLLAMSKGVNVF 96 (359)
T ss_dssp HHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 999999999999999887
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-05 Score=77.11 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=61.7
Q ss_pred CCCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCC-CCCcEEEEcCCCch
Q 017153 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSI 113 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~ 113 (376)
|+++||||+|+ |.+|+. +++.|..+ |.++++++.+++..- +.+... -.+.+.. +.+++ .++|+|+.|+|+..
T Consensus 3 m~~~~vgiiG~-G~~g~~~~~~~l~~~--~~~~lvav~d~~~~~~~~~~~~-~g~~~~~-~~~~l~~~~D~V~i~tp~~~ 77 (319)
T 1tlt_A 3 LKKLRIGVVGL-GGIAQKAWLPVLAAA--SDWTLQGAWSPTRAKALPICES-WRIPYAD-SLSSLAASCDAVFVHSSTAS 77 (319)
T ss_dssp --CEEEEEECC-STHHHHTHHHHHHSC--SSEEEEEEECSSCTTHHHHHHH-HTCCBCS-SHHHHHTTCSEEEECSCTTH
T ss_pred CCcceEEEECC-CHHHHHHHHHHHHhC--CCeEEEEEECCCHHHHHHHHHH-cCCCccC-cHHHhhcCCCEEEEeCCchh
Confidence 34689999998 999996 88988876 889999888764321 111110 0111111 12223 57999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++..++++|+.|+
T Consensus 78 h~~~~~~al~~G~~v~ 93 (319)
T 1tlt_A 78 HFDVVSTLLNAGVHVC 93 (319)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCeEE
Confidence 9999999999998766
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.9e-06 Score=80.16 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=63.7
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcce-EEeecCccC-C--CCCcEEEEcCCC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAY-TVEELTEDS-F--DGVDIALFSAGG 111 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~-~v~~~~~~~-~--~~~DvVf~a~~~ 111 (376)
|+++||||||+ |.+|+.+++.|.++ |.++++++.+++..- +.+.... .+ .+. .+.++ + .++|+|+.|+|+
T Consensus 3 m~~~~igiiG~-G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~~~~~-~~~~~~-~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 3 LDKIRYGIMST-AQIVPRFVAGLRES--AQAEVRGIASRRLENAQKMAKEL-AIPVAY-GSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp CCCEEEEECSC-CTTHHHHHHHHHHS--SSEEEEEEBCSSSHHHHHHHHHT-TCCCCB-SSHHHHHHCTTCSEEEECCCG
T ss_pred CCeEEEEEECc-hHHHHHHHHHHHhC--CCcEEEEEEeCCHHHHHHHHHHc-CCCcee-CCHHHHhcCCCCCEEEEcCCC
Confidence 45689999998 99999999999887 899999888764321 1111110 11 111 12222 2 379999999999
Q ss_pred chhhhhHHHHHhCCCeEE
Q 017153 112 SISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VI 129 (376)
....+++..++++|..|+
T Consensus 78 ~~h~~~~~~al~~gk~vl 95 (330)
T 3e9m_A 78 QGHYSAAKLALSQGKPVL 95 (330)
T ss_dssp GGHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 999999999999998876
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.9e-05 Score=72.33 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=63.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C-CCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~-~~~DvVf~a~~~~~s~~~ 117 (376)
|||||+|+ |.+|+.+++.|.. +.++++.+.+++...+ . .+. +.++ + .++|+||.|+|+....++
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~---~g~~lv~v~d~~~~~~-------~-~~~--~~~~l~~~~~DvVv~~~~~~~~~~~ 66 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLER---NGFEIAAILDVRGEHE-------K-MVR--GIDEFLQREMDVAVEAASQQAVKDY 66 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHH---TTCEEEEEECSSCCCT-------T-EES--SHHHHTTSCCSEEEECSCHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhc---CCCEEEEEEecCcchh-------h-hcC--CHHHHhcCCCCEEEECCCHHHHHHH
Confidence 58999998 9999999998884 6789877776542111 1 111 2222 3 589999999999999999
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
+..++++|+.||+.++-.
T Consensus 67 ~~~~l~~G~~vv~~~~~~ 84 (236)
T 2dc1_A 67 AEKILKAGIDLIVLSTGA 84 (236)
T ss_dssp HHHHHHTTCEEEESCGGG
T ss_pred HHHHHHCCCcEEEECccc
Confidence 999999999999988654
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.7e-05 Score=76.82 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=62.3
Q ss_pred CCEEEEECcccHHHHH-HHH-HHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQE-FLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr-~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~ 113 (376)
++||||||+ |.+|+. .++ +|..+ |.++++++.+++..............+.. +.++ + .++|+|+.|+|+..
T Consensus 2 ~~rvgiiG~-G~~g~~~~~~~~~~~~--~~~~l~av~d~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~D~V~i~tp~~~ 77 (345)
T 3f4l_A 2 VINCAFIGF-GKSTTRYHLPYVLNRK--DSWHVAHIFRRHAKPEEQAPIYSHIHFTS-DLDEVLNDPDVKLVVVCTHADS 77 (345)
T ss_dssp CEEEEEECC-SHHHHHHTHHHHTTCT--TTEEEEEEECSSCCGGGGSGGGTTCEEES-CTHHHHTCTTEEEEEECSCGGG
T ss_pred ceEEEEEec-CHHHHHHHHHHHHhcC--CCeEEEEEEcCCHhHHHHHHhcCCCceEC-CHHHHhcCCCCCEEEEcCChHH
Confidence 589999998 999986 667 55665 89999999876532211111111233332 2222 2 36899999999999
Q ss_pred hhhhHHHHHhCCCeEEE
Q 017153 114 SKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 114 s~~~~~~~~~~G~~VID 130 (376)
..+++.+++++|..|+-
T Consensus 78 h~~~~~~al~aGk~Vl~ 94 (345)
T 3f4l_A 78 HFEYAKRALEAGKNVLV 94 (345)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCcEEE
Confidence 99999999999998883
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-05 Score=78.26 Aligned_cols=87 Identities=13% Similarity=0.197 Sum_probs=62.5
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~ 113 (376)
++||||||+ |.+|+. .+..|... |.++++++++++.. .+.+.....-..+.. +.++ + .++|+|+.|+|+..
T Consensus 23 mirigiIG~-G~ig~~~~~~~~~~~--~~~~lvav~d~~~~~a~~~a~~~g~~~~y~-d~~ell~~~~iDaV~I~tP~~~ 98 (350)
T 4had_A 23 MLRFGIIST-AKIGRDNVVPAIQDA--ENCVVTAIASRDLTRAREMADRFSVPHAFG-SYEEMLASDVIDAVYIPLPTSQ 98 (350)
T ss_dssp CEEEEEESC-CHHHHHTHHHHHHHC--SSEEEEEEECSSHHHHHHHHHHHTCSEEES-SHHHHHHCSSCSEEEECSCGGG
T ss_pred ccEEEEEcC-hHHHHHHHHHHHHhC--CCeEEEEEECCCHHHHHHHHHHcCCCeeeC-CHHHHhcCCCCCEEEEeCCCch
Confidence 589999998 999986 57888877 99999999876521 111111100011221 2222 2 47999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++.+++++|+.|+
T Consensus 99 H~~~~~~al~aGkhVl 114 (350)
T 4had_A 99 HIEWSIKAADAGKHVV 114 (350)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHhcCCEEE
Confidence 9999999999999987
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.7e-06 Score=80.24 Aligned_cols=88 Identities=18% Similarity=0.264 Sum_probs=64.0
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCch
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSI 113 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~ 113 (376)
|+++||||||+ |.+|+..++.|... |.++++++.+++..-.... ....+.+.. +.++ + .++|+|+.|+|+..
T Consensus 3 m~~~~vgiiG~-G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~a-~~~g~~~~~-~~~~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 3 LKKYQLVIVGY-GGMGSYHVTLASAA--DNLEVHGVFDILAEKREAA-AQKGLKIYE-SYEAVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp CCCEEEEEECC-SHHHHHHHHHHHTS--TTEEEEEEECSSHHHHHHH-HTTTCCBCS-CHHHHHHCTTCCEEEECSCGGG
T ss_pred CCcCcEEEECc-CHHHHHHHHHHHhC--CCcEEEEEEcCCHHHHHHH-HhcCCceeC-CHHHHhcCCCCCEEEEcCCcHH
Confidence 45699999998 99999999999887 8999999887643211110 001122111 2222 2 37999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++.+++++|..|+
T Consensus 78 h~~~~~~al~aGkhVl 93 (359)
T 3e18_A 78 HKELAISALEAGKHVV 93 (359)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCCEE
Confidence 9999999999999877
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.4e-06 Score=78.89 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=62.9
Q ss_pred CCCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCch
Q 017153 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI 113 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~ 113 (376)
|+++||||||+ |.+|+. +++.|.++ |.++++++.+++.. .+.+.... .+... .+.++ +.++|+|+.|+|+..
T Consensus 4 M~~~~igiIG~-G~~g~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~~~-~~~~~-~~~~~ll~~~D~V~i~tp~~~ 78 (308)
T 3uuw_A 4 MKNIKMGMIGL-GSIAQKAYLPILTKS--ERFEFVGAFTPNKVKREKICSDY-RIMPF-DSIESLAKKCDCIFLHSSTET 78 (308)
T ss_dssp -CCCEEEEECC-SHHHHHHTHHHHTSC--SSSEEEEEECSCHHHHHHHHHHH-TCCBC-SCHHHHHTTCSEEEECCCGGG
T ss_pred cccCcEEEEec-CHHHHHHHHHHHHhC--CCeEEEEEECCCHHHHHHHHHHc-CCCCc-CCHHHHHhcCCEEEEeCCcHh
Confidence 34689999998 999996 88989877 88999998876432 11111100 11111 12222 358999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++..++++|..|+
T Consensus 79 h~~~~~~al~~gk~vl 94 (308)
T 3uuw_A 79 HYEIIKILLNLGVHVY 94 (308)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCcEE
Confidence 9999999999999877
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.5e-05 Score=77.73 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=63.7
Q ss_pred CCCCEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecCCCCC-ceeeec-CcceEEeecCccC-C--CCCcEEEEcCC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAG-KQLSFQ-DKAYTVEELTEDS-F--DGVDIALFSAG 110 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~~~~g-~~~~~~-~~~~~v~~~~~~~-~--~~~DvVf~a~~ 110 (376)
|+++||||||+ |.+|+..++.|. .. |.++++++.+++..- +.+... +....... +.++ + .++|+|+.|+|
T Consensus 21 m~~~rvgiIG~-G~~g~~~~~~l~~~~--~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~-~~~~ll~~~~~D~V~i~tp 96 (357)
T 3ec7_A 21 GMTLKAGIVGI-GMIGSDHLRRLANTV--SGVEVVAVCDIVAGRAQAALDKYAIEAKDYN-DYHDLINDKDVEVVIITAS 96 (357)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHHTC--TTEEEEEEECSSTTHHHHHHHHHTCCCEEES-SHHHHHHCTTCCEEEECSC
T ss_pred CCeeeEEEECC-cHHHHHHHHHHHhhC--CCcEEEEEEeCCHHHHHHHHHHhCCCCeeeC-CHHHHhcCCCCCEEEEcCC
Confidence 44689999998 999999999988 66 899999988765321 111111 10122221 2222 2 36999999999
Q ss_pred CchhhhhHHHHHhCCCeEE
Q 017153 111 GSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VI 129 (376)
+....+++.+++++|..|+
T Consensus 97 ~~~h~~~~~~al~aGk~Vl 115 (357)
T 3ec7_A 97 NEAHADVAVAALNANKYVF 115 (357)
T ss_dssp GGGHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHCCCCEE
Confidence 9999999999999998877
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.88 E-value=1.7e-05 Score=76.92 Aligned_cols=86 Identities=10% Similarity=0.175 Sum_probs=63.9
Q ss_pred CCEEEEECcccHHHH-HHHHHHhcCCCCCeEEEEEecCCCCCceeeec--CcceEEeecCccC-C--CCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--DKAYTVEELTEDS-F--DGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~-eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~--~~~~~v~~~~~~~-~--~~~DvVf~a~~~~ 112 (376)
++||||||+ |.+|+ ..++.|..+ |.++++++.+++ ..+.+... .....+.. +.++ + .++|+|+.|+|+.
T Consensus 2 ~~rvgiiG~-G~~g~~~~~~~l~~~--~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~-~~~~ll~~~~~D~V~i~tp~~ 76 (349)
T 3i23_A 2 TVKMGFIGF-GKSANRYHLPYVMIR--ETLEVKTIFDLH-VNEKAAAPFKEKGVNFTA-DLNELLTDPEIELITICTPAH 76 (349)
T ss_dssp CEEEEEECC-SHHHHHTTHHHHTTC--TTEEEEEEECTT-CCHHHHHHHHTTTCEEES-CTHHHHSCTTCCEEEECSCGG
T ss_pred eeEEEEEcc-CHHHHHHHHHHHhhC--CCeEEEEEECCC-HHHHHHHhhCCCCCeEEC-CHHHHhcCCCCCEEEEeCCcH
Confidence 589999998 99998 577888776 899999998876 33333211 01223322 2222 2 3699999999999
Q ss_pred hhhhhHHHHHhCCCeEE
Q 017153 113 ISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VI 129 (376)
...+++.+++++|+.|+
T Consensus 77 ~h~~~~~~al~aGk~Vl 93 (349)
T 3i23_A 77 THYDLAKQAILAGKSVI 93 (349)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCEEE
Confidence 99999999999999887
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.7e-05 Score=76.59 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=63.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CC--CCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FD--GVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~--~~DvVf~a~~~~~s 114 (376)
++||||||+ |.+|+..++.|..+ |.++++++.+++... +.+.... ...+.. +.++ +. ++|+|+.|+|+...
T Consensus 4 ~~rvgiiG~-G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~~~-g~~~~~-~~~~~l~~~~~D~V~i~tp~~~h 78 (344)
T 3euw_A 4 TLRIALFGA-GRIGHVHAANIAAN--PDLELVVIADPFIEGAQRLAEAN-GAEAVA-SPDEVFARDDIDGIVIGSPTSTH 78 (344)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHTT-TCEEES-SHHHHTTCSCCCEEEECSCGGGH
T ss_pred ceEEEEECC-cHHHHHHHHHHHhC--CCcEEEEEECCCHHHHHHHHHHc-CCceeC-CHHHHhcCCCCCEEEEeCCchhh
Confidence 589999998 99999999999887 899999888764321 1111111 122221 2222 33 79999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++..++++|..|+
T Consensus 79 ~~~~~~al~~gk~v~ 93 (344)
T 3euw_A 79 VDLITRAVERGIPAL 93 (344)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999999998877
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.6e-05 Score=76.61 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=63.0
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEEEE
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIALF 107 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~ 107 (376)
|..+++++||+|+|+ |.+|+..++.|. .+ +.++++++.+++.. .+.+........+.. +.++ + .++|+|+.
T Consensus 2 m~~~~~~~~v~iiG~-G~ig~~~~~~l~~~~--~~~~~vav~d~~~~~~~~~a~~~g~~~~~~-~~~~~l~~~~~D~V~i 77 (346)
T 3cea_A 2 MVTTRKPLRAAIIGL-GRLGERHARHLVNKI--QGVKLVAACALDSNQLEWAKNELGVETTYT-NYKDMIDTENIDAIFI 77 (346)
T ss_dssp ---CCCCEEEEEECC-STTHHHHHHHHHHTC--SSEEEEEEECSCHHHHHHHHHTTCCSEEES-CHHHHHTTSCCSEEEE
T ss_pred CCCCCCcceEEEEcC-CHHHHHHHHHHHhcC--CCcEEEEEecCCHHHHHHHHHHhCCCcccC-CHHHHhcCCCCCEEEE
Confidence 333455789999998 999999999988 66 88999988765421 111111100102221 2222 2 37999999
Q ss_pred cCCCchhhhhHHHHHhCCCeEE
Q 017153 108 SAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VI 129 (376)
|+|+....+++.+++++|..|+
T Consensus 78 ~tp~~~h~~~~~~al~~G~~v~ 99 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNAGLNVF 99 (346)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEE
T ss_pred eCChHhHHHHHHHHHHCCCEEE
Confidence 9999999999999999998776
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.7e-05 Score=71.33 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=58.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
+|||+|+|+ |.+|+.+++.+.++ ++ +++++.++.... . ..+.+.. +.+++.++|++++++......++.
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~--~~-eLva~~d~~~~~-~-----~gv~v~~-dl~~l~~~DVvIDft~p~a~~~~~ 71 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEK--GH-EIVGVIENTPKA-T-----TPYQQYQ-HIADVKGADVAIDFSNPNLLFPLL 71 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TC-EEEEEECSSCC--------CCSCBCS-CTTTCTTCSEEEECSCHHHHHHHH
T ss_pred ceEEEEECc-CHHHHHHHHHHHhC--CC-EEEEEEecCccc-c-----CCCceeC-CHHHHhCCCEEEEeCChHHHHHHH
Confidence 489999999 99999999999988 78 999877654331 1 1122221 222222899999888777777776
Q ss_pred HHHHhCCCeEEEcCCCC
Q 017153 119 PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~ 135 (376)
. +++|+.+|..+..|
T Consensus 72 ~--l~~g~~vVigTTG~ 86 (243)
T 3qy9_A 72 D--EDFHLPLVVATTGE 86 (243)
T ss_dssp T--SCCCCCEEECCCSS
T ss_pred H--HhcCCceEeCCCCC
Confidence 5 68888888655433
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-05 Score=70.70 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=61.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C-CCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~-~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|+|++|.+|+.+++.+.++ |.++++++.++.. +.+. + .++|+|++++......++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~--~~~elva~~d~~~-----------------dl~~~~~~~~DvvIDfT~p~a~~~~ 61 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA--DDLTLSAELDAGD-----------------PLSLLTDGNTEVVIDFTHPDVVMGN 61 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC--TTCEEEEEECTTC-----------------CTHHHHHTTCCEEEECSCTTTHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEccCC-----------------CHHHHhccCCcEEEEccChHHHHHH
Confidence 58999999999999999999877 8899998775420 1111 1 368999999999999999
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
+..++++|+.+|-.+..|
T Consensus 62 ~~~a~~~g~~~VigTTG~ 79 (245)
T 1p9l_A 62 LEFLIDNGIHAVVGTTGF 79 (245)
T ss_dssp HHHHHHTTCEEEECCCCC
T ss_pred HHHHHHcCCCEEEcCCCC
Confidence 999999999988655433
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.4e-05 Score=77.18 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s 114 (376)
++||||||+ |.+|+..++.|..+ |.++++++.+++..- +.+........+.. +.++ + .++|+|+.|+|+...
T Consensus 2 ~~rvgiIG~-G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~D~V~i~tp~~~h 77 (344)
T 3ezy_A 2 SLRIGVIGL-GRIGTIHAENLKMI--DDAILYAISDVREDRLREMKEKLGVEKAYK-DPHELIEDPNVDAVLVCSSTNTH 77 (344)
T ss_dssp CEEEEEECC-SHHHHHHHHHGGGS--TTEEEEEEECSCHHHHHHHHHHHTCSEEES-SHHHHHHCTTCCEEEECSCGGGH
T ss_pred eeEEEEEcC-CHHHHHHHHHHHhC--CCcEEEEEECCCHHHHHHHHHHhCCCceeC-CHHHHhcCCCCCEEEEcCCCcch
Confidence 589999998 99999999999887 899999988764221 11111000011221 2222 2 379999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++..++++|..|+
T Consensus 78 ~~~~~~al~~gk~v~ 92 (344)
T 3ezy_A 78 SELVIACAKAKKHVF 92 (344)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 999999999998876
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.7e-05 Score=76.09 Aligned_cols=85 Identities=13% Similarity=0.162 Sum_probs=63.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s 114 (376)
++||||+|+ |.+|+..++.|..+ |.++++++.+++..- +.+.... .+.+. +.++ + .++|+|+.|+|+...
T Consensus 3 ~~~vgiiG~-G~~g~~~~~~l~~~--~~~~l~av~d~~~~~~~~~~~~~-~~~~~--~~~~~l~~~~~D~V~i~tp~~~h 76 (331)
T 4hkt_A 3 TVRFGLLGA-GRIGKVHAKAVSGN--ADARLVAVADAFPAAAEAIAGAY-GCEVR--TIDAIEAAADIDAVVICTPTDTH 76 (331)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHHT-TCEEC--CHHHHHHCTTCCEEEECSCGGGH
T ss_pred ceEEEEECC-CHHHHHHHHHHhhC--CCcEEEEEECCCHHHHHHHHHHh-CCCcC--CHHHHhcCCCCCEEEEeCCchhH
Confidence 589999998 99999999999887 899999888764321 1111110 12221 2222 2 379999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++..++++|..|+
T Consensus 77 ~~~~~~al~~gk~v~ 91 (331)
T 4hkt_A 77 ADLIERFARAGKAIF 91 (331)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999999998877
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.7e-05 Score=74.75 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=61.0
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcC-----CCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-C--CCCcEEEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDR-----DFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-F--DGVDIALF 107 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~-----~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~ 107 (376)
|+++||||||+ |++|+.-++.+... +.|.++++++++++..- +.+........+.. +.++ + .++|+|+.
T Consensus 23 MkkirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~-d~~ell~~~~iDaV~I 100 (393)
T 4fb5_A 23 MKPLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATA-DWRALIADPEVDVVSV 100 (393)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEES-CHHHHHHCTTCCEEEE
T ss_pred CCCccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecC-CHHHHhcCCCCcEEEE
Confidence 45799999998 99999776655331 23788999998765321 11111100011221 2222 2 47899999
Q ss_pred cCCCchhhhhHHHHHhCCCeEE
Q 017153 108 SAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VI 129 (376)
|+|+....+++.+++++|+.|+
T Consensus 101 atP~~~H~~~a~~al~aGkhVl 122 (393)
T 4fb5_A 101 TTPNQFHAEMAIAALEAGKHVW 122 (393)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEE
T ss_pred CCChHHHHHHHHHHHhcCCeEE
Confidence 9999999999999999999987
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=4.8e-05 Score=72.81 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=63.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe-ecCcc---------CCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTED---------SFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~-~~~~~---------~~~~~DvVf~a 108 (376)
++||||||+.|++|...++.|... ..+++++++++..-...........+. +.+.- .-.++|+|+.|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~---~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~ 79 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV---GGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIA 79 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT---TCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC---CCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEEC
Confidence 589999999889999999999875 479999887654322111111122222 21110 12579999999
Q ss_pred CCCchhhhhHHHHHhCCCeEE
Q 017153 109 AGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VI 129 (376)
+|+....+++.+++++|+.|+
T Consensus 80 tP~~~H~~~~~~al~aGkhVl 100 (312)
T 3o9z_A 80 SPNHLHYPQIRMALRLGANAL 100 (312)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred CCchhhHHHHHHHHHCCCeEE
Confidence 999999999999999999987
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.7e-05 Score=78.01 Aligned_cols=88 Identities=18% Similarity=0.163 Sum_probs=62.6
Q ss_pred CCCEEEEECcccHHHH-HHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcc--eEEeecCccC-C--CCCcEEEEc
Q 017153 38 SAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKA--YTVEELTEDS-F--DGVDIALFS 108 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~-eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~--~~v~~~~~~~-~--~~~DvVf~a 108 (376)
+++||||||+ |.+|+ .+++.|.++ +.++++++.+++.. .+.+.. +... +.+.. +.++ + .++|+|+.|
T Consensus 82 ~~irigiIG~-G~~g~~~~~~~l~~~--~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~-~~~~ll~~~~vD~V~ia 157 (433)
T 1h6d_A 82 RRFGYAIVGL-GKYALNQILPGFAGC--QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYS-NFDKIAKDPKIDAVYII 157 (433)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHTTTC--SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSS-SGGGGGGCTTCCEEEEC
T ss_pred CceEEEEECC-cHHHHHHHHHHHhhC--CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccC-CHHHHhcCCCCCEEEEc
Confidence 3689999999 99997 899988876 88999988876421 111111 1110 11111 2333 2 379999999
Q ss_pred CCCchhhhhHHHHHhCCCeEE
Q 017153 109 AGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VI 129 (376)
+|+....+++..++++|..|+
T Consensus 158 tp~~~h~~~~~~al~aGk~Vl 178 (433)
T 1h6d_A 158 LPNSLHAEFAIRAFKAGKHVM 178 (433)
T ss_dssp SCGGGHHHHHHHHHHTTCEEE
T ss_pred CCchhHHHHHHHHHHCCCcEE
Confidence 999999999999999999876
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.3e-05 Score=74.47 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=63.2
Q ss_pred CCCEEEEECcccHHHH-HHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC----CCCcEEEEcCCCc
Q 017153 38 SAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF----DGVDIALFSAGGS 112 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~-eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~----~~~DvVf~a~~~~ 112 (376)
+++||||||+ |.+|+ ..++.|... |.++++++++++..- . .+.+.. +.+++ .++|+|+.|+|+.
T Consensus 24 ~~~rvgiiG~-G~ig~~~~~~~l~~~--~~~~lvav~d~~~~~----~---g~~~~~-~~~~ll~~~~~vD~V~i~tp~~ 92 (330)
T 4ew6_A 24 SPINLAIVGV-GKIVRDQHLPSIAKN--ANFKLVATASRHGTV----E---GVNSYT-TIEAMLDAEPSIDAVSLCMPPQ 92 (330)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHHHHC--TTEEEEEEECSSCCC----T---TSEEES-SHHHHHHHCTTCCEEEECSCHH
T ss_pred CCceEEEEec-CHHHHHHHHHHHHhC--CCeEEEEEEeCChhh----c---CCCccC-CHHHHHhCCCCCCEEEEeCCcH
Confidence 3589999998 99998 789999887 999999998765321 1 122221 22221 4699999999999
Q ss_pred hhhhhHHHHHhCCCeEE
Q 017153 113 ISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VI 129 (376)
...+++.+++++|+.|+
T Consensus 93 ~H~~~~~~al~aGkhVl 109 (330)
T 4ew6_A 93 YRYEAAYKALVAGKHVF 109 (330)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHcCCcEE
Confidence 99999999999999888
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-05 Score=75.79 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=62.9
Q ss_pred CCEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecCCCC-CceeeecCc-ceEEeecCccCC---CCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSA-GKQLSFQDK-AYTVEELTEDSF---DGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~~~~-g~~~~~~~~-~~~v~~~~~~~~---~~~DvVf~a~~~~ 112 (376)
++||||||+ |.+|+..++.|. .+ |.++++++.+++.. .+.+..... ...+.. +.+++ .++|+|+.|+|+.
T Consensus 2 ~~rigiIG~-G~~g~~~~~~l~~~~--~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~-~~~~ll~~~~~D~V~i~tp~~ 77 (344)
T 3mz0_A 2 SLRIGVIGT-GAIGKEHINRITNKL--SGAEIVAVTDVNQEAAQKVVEQYQLNATVYP-NDDSLLADENVDAVLVTSWGP 77 (344)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTC--SSEEEEEEECSSHHHHHHHHHHTTCCCEEES-SHHHHHHCTTCCEEEECSCGG
T ss_pred eEEEEEECc-cHHHHHHHHHHHhhC--CCcEEEEEEcCCHHHHHHHHHHhCCCCeeeC-CHHHHhcCCCCCEEEECCCch
Confidence 589999998 999999999998 66 89999998876421 111111111 122221 22222 3699999999999
Q ss_pred hhhhhHHHHHhCCCeEE
Q 017153 113 ISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VI 129 (376)
...+++.+++++|..|+
T Consensus 78 ~h~~~~~~al~~Gk~vl 94 (344)
T 3mz0_A 78 AHESSVLKAIKAQKYVF 94 (344)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHCCCcEE
Confidence 99999999999998877
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.9e-05 Score=73.71 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=62.1
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~s 114 (376)
++||||||+ |.+|+. .++.|..+ |.++++++.+++..-.. .......+.. +.++ + .++|+|+.|+|+...
T Consensus 7 ~~rvgiiG~-G~~g~~~~~~~~~~~--~~~~l~av~d~~~~~~~--~~~~~~~~~~-~~~~ll~~~~vD~V~i~tp~~~H 80 (352)
T 3kux_A 7 KIKVGLLGY-GYASKTFHAPLIMGT--PGLELAGVSSSDASKVH--ADWPAIPVVS-DPQMLFNDPSIDLIVIPTPNDTH 80 (352)
T ss_dssp CEEEEEECC-SHHHHHTHHHHHHTS--TTEEEEEEECSCHHHHH--TTCSSCCEES-CHHHHHHCSSCCEEEECSCTTTH
T ss_pred CceEEEECC-CHHHHHHHHHHHhhC--CCcEEEEEECCCHHHHH--hhCCCCceEC-CHHHHhcCCCCCEEEEeCChHHH
Confidence 589999998 999997 78888877 89999999876432100 0111122221 2222 2 369999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++.+++++|..|+
T Consensus 81 ~~~~~~al~aGkhV~ 95 (352)
T 3kux_A 81 FPLAQSALAAGKHVV 95 (352)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 999999999999877
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.8e-05 Score=76.78 Aligned_cols=87 Identities=9% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEEEEcCCCch
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSI 113 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~ 113 (376)
+++||||||+ |.+|+..++.|..+ |.++++++.+++.. .+.+... -.+... .+.++ + .++|+|+.|+|+..
T Consensus 4 ~~~~vgiiG~-G~~g~~~~~~l~~~--~~~~lvav~d~~~~~~~~~~~~-~g~~~~-~~~~~~l~~~~~D~V~i~tp~~~ 78 (354)
T 3db2_A 4 NPVGVAAIGL-GRWAYVMADAYTKS--EKLKLVTCYSRTEDKREKFGKR-YNCAGD-ATMEALLAREDVEMVIITVPNDK 78 (354)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTC--SSEEEEEEECSSHHHHHHHHHH-HTCCCC-SSHHHHHHCSSCCEEEECSCTTS
T ss_pred CcceEEEEcc-CHHHHHHHHHHHhC--CCcEEEEEECCCHHHHHHHHHH-cCCCCc-CCHHHHhcCCCCCEEEEeCChHH
Confidence 3589999998 99999999999887 89999998876421 1111100 011111 12222 2 47999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++.+++++|..|+
T Consensus 79 h~~~~~~al~~gk~vl 94 (354)
T 3db2_A 79 HAEVIEQCARSGKHIY 94 (354)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 9999999999998876
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.4e-05 Score=72.12 Aligned_cols=88 Identities=10% Similarity=0.066 Sum_probs=63.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe-ecCcc----------CCCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTED----------SFDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~-~~~~~----------~~~~~DvVf~ 107 (376)
++||||||+.|++|...++.|... ..+++++++++..-...........+. +.+.- .-.++|+|+.
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~---~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I 79 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT---GNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSI 79 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT---TCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC---CCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEE
Confidence 589999999889999999999874 579999887654322111111122222 21110 1247999999
Q ss_pred cCCCchhhhhHHHHHhCCCeEE
Q 017153 108 SAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VI 129 (376)
|+|+....+++.+++++|+.|+
T Consensus 80 ~tP~~~H~~~~~~al~aGkhVl 101 (318)
T 3oa2_A 80 CSPNYLHYPHIAAGLRLGCDVI 101 (318)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCcHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999987
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.4e-05 Score=74.63 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=62.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEEEEcCCCch
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGSI 113 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~~ 113 (376)
+++||||+|+ |.+|+.+++.|.++ |.++++++.+++.. .+.+. .. +.... +.++ + .++|+|+.|+|+..
T Consensus 9 ~~~~igiIG~-G~~g~~~~~~l~~~--~~~~~v~v~d~~~~~~~~~~--~~-~~~~~-~~~~~l~~~~~D~V~i~tp~~~ 81 (315)
T 3c1a_A 9 SPVRLALIGA-GRWGKNYIRTIAGL--PGAALVRLASSNPDNLALVP--PG-CVIES-DWRSVVSAPEVEAVIIATPPAT 81 (315)
T ss_dssp CCEEEEEEEC-TTTTTTHHHHHHHC--TTEEEEEEEESCHHHHTTCC--TT-CEEES-STHHHHTCTTCCEEEEESCGGG
T ss_pred CcceEEEECC-cHHHHHHHHHHHhC--CCcEEEEEEeCCHHHHHHHH--hh-CcccC-CHHHHhhCCCCCEEEEeCChHH
Confidence 4589999998 99999999999887 88999988765421 11111 11 22221 2222 3 37999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++.+++++|..|+
T Consensus 82 h~~~~~~al~~Gk~v~ 97 (315)
T 3c1a_A 82 HAEITLAAIASGKAVL 97 (315)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCcEE
Confidence 9999999999998776
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=71.11 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=61.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC--------CeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP--------YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p--------~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
++||||+|. |.+|+.+++.|.++ + .++++++++++.. +.-... ... +.. +.+++-++|+|+.|+|
T Consensus 3 ~irvgIiG~-G~VG~~~~~~l~~~--~~~l~~~g~~~~lvaV~d~~~~-~~~~~~-~~~-~~~-d~~~ll~iDvVve~t~ 75 (332)
T 2ejw_A 3 ALKIALLGG-GTVGSAFYNLVLER--AEELSAFGVVPRFLGVLVRDPR-KPRAIP-QEL-LRA-EPFDLLEADLVVEAMG 75 (332)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHT--GGGGGGGTEEEEEEEEECSCTT-SCCSSC-GGG-EES-SCCCCTTCSEEEECCC
T ss_pred eeEEEEEcC-CHHHHHHHHHHHhC--hhhHhhcCCCEEEEEEEECCHH-HhhccC-ccc-ccC-CHHHHhCCCEEEECCC
Confidence 589999998 99999999999887 6 6889888876522 111111 111 221 2233228999999999
Q ss_pred Cc-hhhhhHHHHHhCCCeEEE
Q 017153 111 GS-ISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 111 ~~-~s~~~~~~~~~~G~~VID 130 (376)
+. .+.++..+++++|..||-
T Consensus 76 ~~~~a~~~~~~AL~aGKhVVt 96 (332)
T 2ejw_A 76 GVEAPLRLVLPALEAGIPLIT 96 (332)
T ss_dssp CSHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHHcCCeEEE
Confidence 87 567788889999999995
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=7.2e-05 Score=71.78 Aligned_cols=122 Identities=17% Similarity=0.121 Sum_probs=60.2
Q ss_pred cccccccccccccccCCCCCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceee
Q 017153 5 SSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS 83 (376)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~ 83 (376)
|||....|--.-.|+..--++|+-. .++++.+||+|||+ |.+|..+.+.|...+++ .++.+. +++... +...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~kI~IIG~-G~mG~slA~~l~~~G~~-~~V~~~-dr~~~~~~~a~ 75 (314)
T 3ggo_A 3 SSHHHHHHSSGLVPRGSHMKNIIKI----LKSLSMQNVLIVGV-GFMGGSFAKSLRRSGFK-GKIYGY-DINPESISKAV 75 (314)
T ss_dssp ------------------------------CCCSCSEEEEESC-SHHHHHHHHHHHHTTCC-SEEEEE-CSCHHHHHHHH
T ss_pred CcccccccccCccccccCcCcCCch----hhhcCCCEEEEEee-CHHHHHHHHHHHhCCCC-CEEEEE-ECCHHHHHHHH
Confidence 5666555544445554443333322 12234589999997 99999999999887442 255433 333210 0000
Q ss_pred ecCcceEEeecCcc--CCCCCcEEEEcCCCchhhhhHHHHH---hCCCeEEEcCCC
Q 017153 84 FQDKAYTVEELTED--SFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 84 ~~~~~~~v~~~~~~--~~~~~DvVf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~ 134 (376)
..+...... .+.+ .+.++|+||+|+|.....+....+. ..|+.|+|.++.
T Consensus 76 ~~G~~~~~~-~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~Sv 130 (314)
T 3ggo_A 76 DLGIIDEGT-TSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSV 130 (314)
T ss_dssp HTTSCSEEE-SCTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred HCCCcchhc-CCHHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECCCC
Confidence 011100111 1233 3578999999999988777766554 468999999876
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.67 E-value=4.2e-05 Score=70.96 Aligned_cols=92 Identities=13% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
.|||+|+|+ |.+|..+.+.|...++ +++.+.+++..- +.+... ..+.+.. +. +.+.++|+||+|+|.....+
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~---~~v~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~Dvvi~av~~~~~~~ 83 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGF---RIVQVYSRTEESARELAQK-VEAEYTT-DLAEVNPYAKLYIVSLKDSAFAE 83 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTC---CEEEEECSSHHHHHHHHHH-TTCEEES-CGGGSCSCCSEEEECCCHHHHHH
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCC---eEEEEEeCCHHHHHHHHHH-cCCceeC-CHHHHhcCCCEEEEecCHHHHHH
Confidence 479999998 9999999999987643 444455443210 011110 0122221 23 33578999999999987777
Q ss_pred hHHHHHh---CCCeEEEcCCCCC
Q 017153 117 FGPIAVE---KGSIVVDNSSAFR 136 (376)
Q Consensus 117 ~~~~~~~---~G~~VIDlS~~~R 136 (376)
....+.+ .|..|||+++...
T Consensus 84 v~~~l~~~~~~~~ivv~~s~~~~ 106 (266)
T 3d1l_A 84 LLQGIVEGKREEALMVHTAGSIP 106 (266)
T ss_dssp HHHHHHTTCCTTCEEEECCTTSC
T ss_pred HHHHHHhhcCCCcEEEECCCCCc
Confidence 7776654 6889999998764
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=3.3e-05 Score=76.01 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=59.2
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcC
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSA 109 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~ 109 (376)
||....++||+|+|+ |+ |+.-++.+.+. | .++++++++++.. .+.++... .+.... +.++ ++++|+|+.|+
T Consensus 1 M~~~~~~~rv~VvG~-G~-g~~h~~a~~~~--~~~~elvav~~~~~~~a~~~a~~~-gv~~~~-~~~~l~~~~D~v~i~~ 74 (372)
T 4gmf_A 1 MPSASPKQRVLIVGA-KF-GEMYLNAFMQP--PEGLELVGLLAQGSARSRELAHAF-GIPLYT-SPEQITGMPDIACIVV 74 (372)
T ss_dssp ------CEEEEEECS-TT-THHHHHTTSSC--CTTEEEEEEECCSSHHHHHHHHHT-TCCEES-SGGGCCSCCSEEEECC
T ss_pred CCCCCCCCEEEEEeh-HH-HHHHHHHHHhC--CCCeEEEEEECCCHHHHHHHHHHh-CCCEEC-CHHHHhcCCCEEEEEC
Confidence 555666899999997 86 99888888765 5 6999999876532 12221111 133332 2333 46899999999
Q ss_pred CCchh----hhhHHHHHhCCCeEE
Q 017153 110 GGSIS----KKFGPIAVEKGSIVV 129 (376)
Q Consensus 110 ~~~~s----~~~~~~~~~~G~~VI 129 (376)
|+... .+++.+++++|+-|+
T Consensus 75 p~~~h~~~~~~~a~~al~aGkhVl 98 (372)
T 4gmf_A 75 RSTVAGGAGTQLARHFLARGVHVI 98 (372)
T ss_dssp C--CTTSHHHHHHHHHHHTTCEEE
T ss_pred CCcccchhHHHHHHHHHHcCCcEE
Confidence 98776 688899999999987
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.66 E-value=4.7e-05 Score=71.57 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
++||+|+|+||.+|..+.+.|...+ .++.+ .+++.. -+.+...+ +.+.. ..+.+.++|+||+|+|.....+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g---~~V~~-~~r~~~~~~~~~~~g--~~~~~-~~~~~~~aDvVi~av~~~~~~~v 83 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSA---HHLAA-IEIAPEGRDRLQGMG--IPLTD-GDGWIDEADVVVLALPDNIIEKV 83 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSS---SEEEE-ECCSHHHHHHHHHTT--CCCCC-SSGGGGTCSEEEECSCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEE-EECCHHHHHHHHhcC--CCcCC-HHHHhcCCCEEEEcCCchHHHHH
Confidence 4799999999999999999998864 36653 333211 01111111 11111 12335689999999999887777
Q ss_pred HHHHH---hCCCeEEEcCCCC
Q 017153 118 GPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~~ 135 (376)
.+.+. ..|..|||+|...
T Consensus 84 ~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 84 AEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp HHHHGGGSCTTCEEEESCSHH
T ss_pred HHHHHHhCCCCCEEEECCCCc
Confidence 77664 3588999988754
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.8e-05 Score=75.40 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=63.5
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-C--CCCcEEEEcCCCc
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGS 112 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~ 112 (376)
++++||||||+ |.+|+..++.|..+. |.++++++.+++..- +.+... -.+.... +.++ + .++|+|+.|+|+.
T Consensus 11 ~~~~rvgiiG~-G~~g~~~~~~l~~~~-~~~~lvav~d~~~~~~~~~~~~-~~~~~~~-~~~~ll~~~~~D~V~i~tp~~ 86 (354)
T 3q2i_A 11 DRKIRFALVGC-GRIANNHFGALEKHA-DRAELIDVCDIDPAALKAAVER-TGARGHA-SLTDMLAQTDADIVILTTPSG 86 (354)
T ss_dssp SSCEEEEEECC-STTHHHHHHHHHHTT-TTEEEEEEECSSHHHHHHHHHH-HCCEEES-CHHHHHHHCCCSEEEECSCGG
T ss_pred CCcceEEEEcC-cHHHHHHHHHHHhCC-CCeEEEEEEcCCHHHHHHHHHH-cCCceeC-CHHHHhcCCCCCEEEECCCcH
Confidence 34689999998 999999999887642 689999888764221 111110 0122221 2233 2 4799999999999
Q ss_pred hhhhhHHHHHhCCCeEE
Q 017153 113 ISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VI 129 (376)
...+++.+++++|..|+
T Consensus 87 ~h~~~~~~al~~gk~v~ 103 (354)
T 3q2i_A 87 LHPTQSIECSEAGFHVM 103 (354)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCCEE
Confidence 99999999999998887
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.5e-05 Score=77.56 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCC-------CeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFP-------YRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIA 105 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p-------~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvV 105 (376)
|+++||||||+ |++|+.-++.+... | ..+++++++++.. .+.+........+.. +.++ + .++|+|
T Consensus 4 M~klrvgiIG~-G~ig~~h~~~~~~~--~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~-d~~~ll~~~~iDaV 79 (390)
T 4h3v_A 4 MTNLGIGLIGY-AFMGAAHSQAWRSA--PRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTET-DWRTLLERDDVQLV 79 (390)
T ss_dssp CCEEEEEEECH-HHHHHHHHHHHHHH--HHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEES-CHHHHTTCTTCSEE
T ss_pred CCcCcEEEEcC-CHHHHHHHHHHHhC--ccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccC-CHHHHhcCCCCCEE
Confidence 45799999998 99999888877654 4 3489999876521 111111100012221 2222 3 479999
Q ss_pred EEcCCCchhhhhHHHHHhCCCeEE
Q 017153 106 LFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
+.|+|+....+++.+++++|..|+
T Consensus 80 ~I~tP~~~H~~~~~~al~aGkhVl 103 (390)
T 4h3v_A 80 DVCTPGDSHAEIAIAALEAGKHVL 103 (390)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EEeCChHHHHHHHHHHHHcCCCce
Confidence 999999999999999999999987
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.63 E-value=3.9e-05 Score=73.81 Aligned_cols=88 Identities=16% Similarity=0.230 Sum_probs=61.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcce-EEeecCccCC---CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAY-TVEELTEDSF---DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~-~v~~~~~~~~---~~~DvVf~a~~~~~ 113 (376)
++||||||+ |.+|+..++.|.......++++++.+++.. .+.+.... .+ .+.. +.+++ .++|+|+.|+|+..
T Consensus 2 ~~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~-~~~~~~~-~~~~ll~~~~vD~V~i~tp~~~ 78 (334)
T 3ohs_X 2 ALRWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKH-DIPKAYG-SYEELAKDPNVEVAYVGTQHPQ 78 (334)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHH-TCSCEES-SHHHHHHCTTCCEEEECCCGGG
T ss_pred ccEEEEECc-hHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHc-CCCcccC-CHHHHhcCCCCCEEEECCCcHH
Confidence 589999997 999999999998762225799998876421 11111100 11 1211 22222 37999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++.+++++|..|+
T Consensus 79 H~~~~~~al~~GkhVl 94 (334)
T 3ohs_X 79 HKAAVMLCLAAGKAVL 94 (334)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHhcCCEEE
Confidence 9999999999998876
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00051 Score=61.22 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=55.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC--c------cCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT--E------DSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~--~------~~~~~~DvVf~a~~~ 111 (376)
|||.|.||||++|+.+++.|.+++ .++.++......-... ..+.+...| . +.+.++|+||.|.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTD---YQIYAGARKVEQVPQY----NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSS---CEEEEEESSGGGSCCC----TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCccchhhc----CCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 589999999999999999999863 5777665322111111 122322222 1 124689999999876
Q ss_pred ch----------hhhhHHHHHhCCC-eEEEcCCCC
Q 017153 112 SI----------SKKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 112 ~~----------s~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
.. .....+.+.+.|+ ++|-+|+.+
T Consensus 74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~ 108 (219)
T 3dqp_A 74 GGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF 108 (219)
T ss_dssp TTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence 43 3345555566675 577677754
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.61 E-value=3.9e-05 Score=74.64 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=63.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec-Cc--ceEEeecCccC-C--CCCcEEEEcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DK--AYTVEELTEDS-F--DGVDIALFSAG 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~-~~--~~~v~~~~~~~-~--~~~DvVf~a~~ 110 (376)
+++||||||+ |.+|+.+++.|..+ |.++++++.+++.. .+.+... +. ...+.. +.++ + .++|+|+.|+|
T Consensus 5 ~~~~vgiiG~-G~ig~~~~~~l~~~--~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~D~V~i~tp 80 (362)
T 1ydw_A 5 TQIRIGVMGC-ADIARKVSRAIHLA--PNATISGVASRSLEKAKAFATANNYPESTKIHG-SYESLLEDPEIDALYVPLP 80 (362)
T ss_dssp -CEEEEEESC-CTTHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES-SHHHHHHCTTCCEEEECCC
T ss_pred CceEEEEECc-hHHHHHHHHHHhhC--CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC-CHHHHhcCCCCCEEEEcCC
Confidence 3589999998 99999999999887 88999988875421 1111110 10 122221 2222 2 36999999999
Q ss_pred CchhhhhHHHHHhCCCeEEE
Q 017153 111 GSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VID 130 (376)
+....+++.+++++|+.|+-
T Consensus 81 ~~~h~~~~~~al~aGk~V~~ 100 (362)
T 1ydw_A 81 TSLHVEWAIKAAEKGKHILL 100 (362)
T ss_dssp GGGHHHHHHHHHTTTCEEEE
T ss_pred hHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999998873
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00023 Score=64.51 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=57.0
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---ccC----CCCCcEEEEcC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDS----FDGVDIALFSA 109 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~----~~~~DvVf~a~ 109 (376)
+++++|.|.||||++|+.+++.|+++ ...++.++..+......+. ...+.+...| ++. +.++|+||.|.
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~--G~~~V~~~~R~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADK--QTIKQTLFARQPAKIHKPY--PTNSQIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTC--TTEEEEEEESSGGGSCSSC--CTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhC--CCceEEEEEcChhhhcccc--cCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 34578999999999999999999987 3367776653222111111 1123333222 222 46899999887
Q ss_pred CCch----hhhhHHHHHhCCC-eEEEcCCCC
Q 017153 110 GGSI----SKKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 110 ~~~~----s~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
+... +...++.+.+.|. ++|-+|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~ 127 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAMKACDVKRLIFVLSLG 127 (236)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred CCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence 7532 2334455556675 477677653
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.56 E-value=6.6e-05 Score=71.85 Aligned_cols=85 Identities=19% Similarity=0.347 Sum_probs=59.7
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceE--EeecCccCC-CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYT--VEELTEDSF-DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~--v~~~~~~~~-~~~DvVf~a~~~~~ 113 (376)
++||||||+ |.+|+. +++.|... |.++++ +.+++.. .+.+.... ... +.+ ..+.+ .++|+|+.|+|+..
T Consensus 2 ~~~igiIG~-G~ig~~~~~~~l~~~--~~~~l~-v~d~~~~~~~~~a~~~-g~~~~~~~-~~~~l~~~~D~V~i~tp~~~ 75 (323)
T 1xea_A 2 SLKIAMIGL-GDIAQKAYLPVLAQW--PDIELV-LCTRNPKVLGTLATRY-RVSATCTD-YRDVLQYGVDAVMIHAATDV 75 (323)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTS--TTEEEE-EECSCHHHHHHHHHHT-TCCCCCSS-TTGGGGGCCSEEEECSCGGG
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhC--CCceEE-EEeCCHHHHHHHHHHc-CCCccccC-HHHHhhcCCCEEEEECCchh
Confidence 489999998 999984 89988876 889999 7765421 11111100 111 111 12334 57999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++.+++++|..|+
T Consensus 76 h~~~~~~al~~Gk~V~ 91 (323)
T 1xea_A 76 HSTLAAFFLHLGIPTF 91 (323)
T ss_dssp HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHCCCeEE
Confidence 9999999999998775
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00011 Score=73.74 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=64.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee-----cCcceEEee---cCccC-C--CCCcEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-----QDKAYTVEE---LTEDS-F--DGVDIA 105 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~-----~~~~~~v~~---~~~~~-~--~~~DvV 105 (376)
+++||||||+ |.+|+..++.|..+ |.++++++++++..- +.... +.....+.. .+.++ + .++|+|
T Consensus 19 ~~~rvgiIG~-G~~g~~h~~~l~~~--~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V 95 (444)
T 2ixa_A 19 KKVRIAFIAV-GLRGQTHVENMARR--DDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAV 95 (444)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTC--TTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEE
T ss_pred CCceEEEEec-CHHHHHHHHHHHhC--CCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEE
Confidence 4689999997 99999999999887 899999998764321 11100 111122322 12222 3 369999
Q ss_pred EEcCCCchhhhhHHHHHhCCCeEE
Q 017153 106 LFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
+.|+|+....+++.+++++|+.|+
T Consensus 96 ~i~tp~~~h~~~~~~al~aGkhV~ 119 (444)
T 2ixa_A 96 FVSSPWEWHHEHGVAAMKAGKIVG 119 (444)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEE
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEE
Confidence 999999999999999999999877
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.52 E-value=4.4e-05 Score=75.58 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=61.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC------CCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIALF 107 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~------~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~ 107 (376)
+|+||||||+ |++|+.-++.|.+.. .+.++|+++++++.. .+.+........+.. +.++ + .++|+|+.
T Consensus 25 ~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~-d~~~ll~~~~vD~V~I 102 (412)
T 4gqa_A 25 ARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYG-DWRELVNDPQVDVVDI 102 (412)
T ss_dssp CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEES-SHHHHHHCTTCCEEEE
T ss_pred ccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEEC-CHHHHhcCCCCCEEEE
Confidence 3699999998 999999888776530 136799999876421 111111100112221 2222 2 47899999
Q ss_pred cCCCchhhhhHHHHHhCCCeEE
Q 017153 108 SAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VI 129 (376)
|+|+....+++.+++++|+.|+
T Consensus 103 ~tp~~~H~~~~~~al~aGkhVl 124 (412)
T 4gqa_A 103 TSPNHLHYTMAMAAIAAGKHVY 124 (412)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEE
T ss_pred CCCcHHHHHHHHHHHHcCCCeE
Confidence 9999999999999999999987
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00062 Score=60.76 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=54.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~ 111 (376)
++||.|.||||++|+.|++.|.+++ .++.++.........+. ..+.+...| ++ .+.++|+||.|.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRG---FEVTAVVRHPEKIKIEN---EHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTT---CEEEEECSCGGGCCCCC---TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCC---CEEEEEEcCcccchhcc---CceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 4799999999999999999999873 46766543221111111 223333223 22 13689999999876
Q ss_pred ch------------hhhhHHHHHhCCC-eEEEcCCC
Q 017153 112 SI------------SKKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 112 ~~------------s~~~~~~~~~~G~-~VIDlS~~ 134 (376)
.. +....+.+.+.|+ ++|=+|+.
T Consensus 78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~ 113 (227)
T 3dhn_A 78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113 (227)
T ss_dssp ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence 42 2334445556776 57766665
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.51 E-value=2.9e-05 Score=70.42 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=58.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+|||+|+|+ |.+|..+++.|.+.++ ++..+.+++..- +.+... ........+.+.+.++|+||+|+|.....+.
T Consensus 23 mmkI~IIG~-G~mG~~la~~l~~~g~---~V~~v~~r~~~~~~~l~~~-~g~~~~~~~~~~~~~aDvVilavp~~~~~~v 97 (220)
T 4huj_A 23 MTTYAIIGA-GAIGSALAERFTAAQI---PAIIANSRGPASLSSVTDR-FGASVKAVELKDALQADVVILAVPYDSIADI 97 (220)
T ss_dssp SCCEEEEEC-HHHHHHHHHHHHHTTC---CEEEECTTCGGGGHHHHHH-HTTTEEECCHHHHTTSSEEEEESCGGGHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECCCHHHHHHHHHH-hCCCcccChHHHHhcCCEEEEeCChHHHHHH
Confidence 479999996 9999999999988643 555545543211 111110 0111222123335789999999998776665
Q ss_pred HHHHH-hCCCeEEEcCCCCC
Q 017153 118 GPIAV-EKGSIVVDNSSAFR 136 (376)
Q Consensus 118 ~~~~~-~~G~~VIDlS~~~R 136 (376)
...+. -.|..|||+++.+-
T Consensus 98 ~~~l~~~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 98 VTQVSDWGGQIVVDASNAID 117 (220)
T ss_dssp HTTCSCCTTCEEEECCCCBC
T ss_pred HHHhhccCCCEEEEcCCCCC
Confidence 55432 14678999998763
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0002 Score=65.02 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC---CCCc-eeeecCcceEEeecC-ccC-C--CCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR---SAGK-QLSFQDKAYTVEELT-EDS-F--DGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~---~~g~-~~~~~~~~~~v~~~~-~~~-~--~~~DvVf~a~~ 110 (376)
+.+|+|+|| |..|+.|++.+... ...++++++.+.+ ..|+ .+ ..+++...+ .++ + .++|++++|+|
T Consensus 84 ~~~V~IvGa-G~lG~aLa~~~~~~-~~g~~iVg~~D~dp~~kiG~~~i----~GvpV~~~~dL~~~v~~~~Id~vIIAvP 157 (212)
T 3keo_A 84 TTNVMLVGC-GNIGRALLHYRFHD-RNKMQISMAFDLDSNDLVGKTTE----DGIPVYGISTINDHLIDSDIETAILTVP 157 (212)
T ss_dssp CEEEEEECC-SHHHHHHTTCCCCT-TSSEEEEEEEECTTSTTTTCBCT----TCCBEEEGGGHHHHC-CCSCCEEEECSC
T ss_pred CCEEEEECc-CHHHHHHHHhhhcc-cCCeEEEEEEeCCchhccCceeE----CCeEEeCHHHHHHHHHHcCCCEEEEecC
Confidence 579999999 99999999875322 2579999887644 3354 33 134554432 122 2 37999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCCCCCCC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~~~R~~ 138 (376)
+..+.+.+..+.++|++-|-+=++.+++
T Consensus 158 s~~aq~v~d~lv~~GIk~I~nFap~~l~ 185 (212)
T 3keo_A 158 STEAQEVADILVKAGIKGILSFSPVHLT 185 (212)
T ss_dssp GGGHHHHHHHHHHHTCCEEEECSSSCCC
T ss_pred chhHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 9999999999999999999887777664
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.48 E-value=6.5e-05 Score=73.87 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCEEEEECccc-HHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCC---CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTG-AVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSF---DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG-~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~---~~~DvVf~a~~~~~ 113 (376)
++||||||+ | .+|...++.|..+ |.++++++.+++.. .+.+... -.+.... +.+++ .++|+|+.|+|+..
T Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~--~~~~l~av~d~~~~~~~~~a~~-~g~~~~~-~~~ell~~~~vD~V~i~tp~~~ 76 (387)
T 3moi_A 2 KIRFGICGL-GFAGSVLMAPAMRHH--PDAQIVAACDPNEDVRERFGKE-YGIPVFA-TLAEMMQHVQMDAVYIASPHQF 76 (387)
T ss_dssp CEEEEEECC-SHHHHTTHHHHHHHC--TTEEEEEEECSCHHHHHHHHHH-HTCCEES-SHHHHHHHSCCSEEEECSCGGG
T ss_pred ceEEEEEeC-CHHHHHHHHHHHHhC--CCeEEEEEEeCCHHHHHHHHHH-cCCCeEC-CHHHHHcCCCCCEEEEcCCcHH
Confidence 589999999 7 9999999999887 89999999876421 1111110 0122221 22222 36999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++.+++++|+.|+
T Consensus 77 H~~~~~~al~aGk~Vl 92 (387)
T 3moi_A 77 HCEHVVQASEQGLHII 92 (387)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCcee
Confidence 9999999999999887
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00012 Score=69.42 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=55.0
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCc-cCCCCCcEEEEcCC
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAG 110 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~ 110 (376)
|++.++++||+|+|+ |++|..+.+.|.+.+| ++.+. +++.. -+.+...+ ......++ +.+.++|+||+|+|
T Consensus 1 M~~~~~~~~I~iIG~-G~mG~~~a~~l~~~G~---~V~~~-dr~~~~~~~~~~~g--~~~~~~~~~e~~~~aDvvi~~vp 73 (303)
T 3g0o_A 1 MSLTGTDFHVGIVGL-GSMGMGAARSCLRAGL---STWGA-DLNPQACANLLAEG--ACGAAASAREFAGVVDALVILVV 73 (303)
T ss_dssp ------CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHTT--CSEEESSSTTTTTTCSEEEECCS
T ss_pred CCCCCCCCeEEEECC-CHHHHHHHHHHHHCCC---eEEEE-ECCHHHHHHHHHcC--CccccCCHHHHHhcCCEEEEECC
Confidence 344455689999998 9999999999988644 55544 33211 01111111 11111123 33578999999999
Q ss_pred Cchhh-hhH---H---HHHhCCCeEEEcCCCC
Q 017153 111 GSISK-KFG---P---IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~~s~-~~~---~---~~~~~G~~VIDlS~~~ 135 (376)
..... ... . ..+..|..|||.|...
T Consensus 74 ~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~ 105 (303)
T 3g0o_A 74 NAAQVRQVLFGEDGVAHLMKPGSAVMVSSTIS 105 (303)
T ss_dssp SHHHHHHHHC--CCCGGGSCTTCEEEECSCCC
T ss_pred CHHHHHHHHhChhhHHhhCCCCCEEEecCCCC
Confidence 86432 221 1 2234688999998753
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00013 Score=70.07 Aligned_cols=87 Identities=7% Similarity=0.041 Sum_probs=59.2
Q ss_pred CCCEEEEECcccHHHH-HHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEEEEcCCCc
Q 017153 38 SAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGS 112 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~-eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~ 112 (376)
+++||||||+ |.+|. .+++.|. + +.++++++.+++.. .+.+........+.. +.++ + .++|+|+.|+|+.
T Consensus 3 ~~~rvgiiG~-G~~~~~~~~~~l~-~--~~~~lvav~d~~~~~~~~~a~~~~~~~~~~-~~~~ll~~~~~D~V~i~tp~~ 77 (336)
T 2p2s_A 3 KKIRFAAIGL-AHNHIYDMCQQLI-D--AGAELAGVFESDSDNRAKFTSLFPSVPFAA-SAEQLITDASIDLIACAVIPC 77 (336)
T ss_dssp -CCEEEEECC-SSTHHHHHHHHHH-H--TTCEEEEEECSCTTSCHHHHHHSTTCCBCS-CHHHHHTCTTCCEEEECSCGG
T ss_pred CccEEEEECC-ChHHHHHhhhhhc-C--CCcEEEEEeCCCHHHHHHHHHhcCCCcccC-CHHHHhhCCCCCEEEEeCChh
Confidence 4699999998 88885 5777775 3 78899998876532 222211110111111 2222 2 3799999999999
Q ss_pred hhhhhHHHHHhCCCeEE
Q 017153 113 ISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VI 129 (376)
...+++.+++++|..|+
T Consensus 78 ~h~~~~~~al~aGkhVl 94 (336)
T 2p2s_A 78 DRAELALRTLDAGKDFF 94 (336)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHHCCCcEE
Confidence 99999999999999776
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.41 E-value=6.9e-05 Score=71.86 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=55.7
Q ss_pred CCCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CC
Q 017153 22 PRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SF 99 (376)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~ 99 (376)
-+.+|+|....+....+.+||+|+|+ |++|..+.+.|...+| ++.+. +++.. -+.+.. ..+.... +++ .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~I~iIG~-G~mG~~~a~~l~~~G~---~V~~~-dr~~~~~~~l~~--~g~~~~~-~~~e~~ 85 (320)
T 4dll_A 14 GTENLYFQSMTVESDPYARKITFLGT-GSMGLPMARRLCEAGY---ALQVW-NRTPARAASLAA--LGATIHE-QARAAA 85 (320)
T ss_dssp ---------------CCCSEEEEECC-TTTHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHT--TTCEEES-SHHHHH
T ss_pred cccccceechhhccccCCCEEEEECc-cHHHHHHHHHHHhCCC---eEEEE-cCCHHHHHHHHH--CCCEeeC-CHHHHH
Confidence 34455665543333334689999998 9999999999988644 55543 33211 111111 1222221 222 34
Q ss_pred CCCcEEEEcCCCchh-hhhHH-----HHHhCCCeEEEcCCCC
Q 017153 100 DGVDIALFSAGGSIS-KKFGP-----IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s-~~~~~-----~~~~~G~~VIDlS~~~ 135 (376)
.++|+||+|+|.... .+... .....|..|||.|...
T Consensus 86 ~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~ 127 (320)
T 4dll_A 86 RDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASIT 127 (320)
T ss_dssp TTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCC
T ss_pred hcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCC
Confidence 789999999997533 22221 1235788999998764
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00019 Score=72.12 Aligned_cols=90 Identities=14% Similarity=0.258 Sum_probs=63.3
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceee-ec-C--------------------cceEEee
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-FQ-D--------------------KAYTVEE 93 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~-~~-~--------------------~~~~v~~ 93 (376)
++++||||||+ |.+|+.+++.+... |.++++++++++... +... .. + ....+..
T Consensus 21 ~k~IRVGIIGa-G~iG~~~~~~l~~~--~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~ 97 (446)
T 3upl_A 21 GKPIRIGLIGA-GEMGTDIVTQVARM--QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTD 97 (446)
T ss_dssp TCCEEEEEECC-SHHHHHHHHHHTTS--SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred CCceEEEEECC-hHHHHHHHHHHhhC--CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEEC
Confidence 45799999999 99999999999876 999999998765321 0000 00 1 0112221
Q ss_pred cCccC-C--CCCcEEEEcCCC-chhhhhHHHHHhCCCeEEE
Q 017153 94 LTEDS-F--DGVDIALFSAGG-SISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 94 ~~~~~-~--~~~DvVf~a~~~-~~s~~~~~~~~~~G~~VID 130 (376)
|.++ + .++|+|+.|+|+ ....+++.+++++|..|+-
T Consensus 98 -D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~ 137 (446)
T 3upl_A 98 -DNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVM 137 (446)
T ss_dssp -CHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred -CHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEe
Confidence 2222 2 379999999987 4567899999999999984
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00016 Score=69.88 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=62.0
Q ss_pred CCCEEEEECccc-HHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEEEEcCCCc
Q 017153 38 SAPSVAVVGVTG-AVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGS 112 (376)
Q Consensus 38 ~~irVaIvGaTG-~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~ 112 (376)
+++||||||+ | .+|+..++.|...+ |.++++++++++.. .+.+........+.. +.++ + .++|+|+.|+|+.
T Consensus 17 ~~irvgiIG~-G~~~g~~~~~~l~~~~-~~~~lvav~d~~~~~~~~~a~~~~~~~~~~-~~~~ll~~~~vD~V~i~tp~~ 93 (340)
T 1zh8_A 17 RKIRLGIVGC-GIAARELHLPALKNLS-HLFEITAVTSRTRSHAEEFAKMVGNPAVFD-SYEELLESGLVDAVDLTLPVE 93 (340)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHHHTTT-TTEEEEEEECSSHHHHHHHHHHHSSCEEES-CHHHHHHSSCCSEEEECCCGG
T ss_pred CceeEEEEec-CHHHHHHHHHHHHhCC-CceEEEEEEcCCHHHHHHHHHHhCCCcccC-CHHHHhcCCCCCEEEEeCCch
Confidence 4689999998 8 89999999887641 67999999876421 111111000112221 2222 2 3799999999999
Q ss_pred hhhhhHHHHHhCCCeEE
Q 017153 113 ISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VI 129 (376)
...+++.+++++|..|+
T Consensus 94 ~H~~~~~~al~aGkhVl 110 (340)
T 1zh8_A 94 LNLPFIEKALRKGVHVI 110 (340)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCcEE
Confidence 99999999999999876
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00013 Score=68.41 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=57.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
++||+|+|+ |.+|..+.+.|..+++ ..++.+. +++.. -+.+...+...... .+. +.+.++|+||+|+|.....+
T Consensus 6 ~~~I~iIG~-G~mG~~~a~~l~~~g~-~~~V~~~-d~~~~~~~~~~~~g~~~~~~-~~~~~~~~~aDvVilavp~~~~~~ 81 (290)
T 3b1f_A 6 EKTIYIAGL-GLIGASLALGIKRDHP-HYKIVGY-NRSDRSRDIALERGIVDEAT-ADFKVFAALADVIILAVPIKKTID 81 (290)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCT-TSEEEEE-CSSHHHHHHHHHTTSCSEEE-SCTTTTGGGCSEEEECSCHHHHHH
T ss_pred cceEEEEee-CHHHHHHHHHHHhCCC-CcEEEEE-cCCHHHHHHHHHcCCccccc-CCHHHhhcCCCEEEEcCCHHHHHH
Confidence 479999997 9999999998876532 3465443 33211 01111111100111 122 23468999999999988877
Q ss_pred hHHHHHh----CCCeEEEcCCC
Q 017153 117 FGPIAVE----KGSIVVDNSSA 134 (376)
Q Consensus 117 ~~~~~~~----~G~~VIDlS~~ 134 (376)
....+.+ .|..|||+++.
T Consensus 82 v~~~l~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 82 FIKILADLDLKEDVIITDAGST 103 (290)
T ss_dssp HHHHHHTSCCCTTCEEECCCSC
T ss_pred HHHHHHhcCCCCCCEEEECCCC
Confidence 7776644 47789988764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00031 Score=65.22 Aligned_cols=90 Identities=13% Similarity=0.143 Sum_probs=55.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~~ 112 (376)
|||.|.||||++|+.+++.|.+. +..++.++..+......+.. ..+.+...| ++ .+.++|+||.|.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~--~g~~V~~~~R~~~~~~~~~~--~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~ 76 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDWR--GKVSVRQLDYFNQESMVEAFKGMDTVVFIPSII 76 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT--TCTTEEEEESSGGGSCGGGB--TTBEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhC--CCCcEEEEECCHHHHHHhhh--CCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence 57999999999999999998875 35567666532221111111 123333222 22 257899999998752
Q ss_pred --------hhhhhHHHHHhCCCe-EEEcCC
Q 017153 113 --------ISKKFGPIAVEKGSI-VVDNSS 133 (376)
Q Consensus 113 --------~s~~~~~~~~~~G~~-VIDlS~ 133 (376)
.....++.+.++|++ +|=+|+
T Consensus 77 ~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 77 HPSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ccchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 234455566677864 665555
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00023 Score=68.88 Aligned_cols=90 Identities=17% Similarity=0.249 Sum_probs=60.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCC-------CeEEEEEecCCCCC-ce-ee---ec----CcceE-Ee--ecCccC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-------YRSIKMLASKRSAG-KQ-LS---FQ----DKAYT-VE--ELTEDS 98 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p-------~~~l~~v~s~~~~g-~~-~~---~~----~~~~~-v~--~~~~~~ 98 (376)
+++||||+|+ |.+|+.+++.|.++ + .++++++++++..- +. +. +. ...+. +. ..+.++
T Consensus 5 ~~irvgIiG~-G~VG~~~~~~l~~~--~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 81 (331)
T 3c8m_A 5 KTINLSIFGL-GNVGLNLLRIIRSF--NEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASE 81 (331)
T ss_dssp EEEEEEEECC-SHHHHHHHHHHHHH--HHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHH
T ss_pred cEEeEEEEec-CHHHHHHHHHHHhC--hHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHH
Confidence 3589999998 99999999999775 4 58888888754210 00 10 00 00110 11 012222
Q ss_pred C--CCCcEEEEcCCCc----hhhhhHHHHHhCCCeEEE
Q 017153 99 F--DGVDIALFSAGGS----ISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 99 ~--~~~DvVf~a~~~~----~s~~~~~~~~~~G~~VID 130 (376)
+ .++|+|+.|+|+. .+.++..+++++|+.||-
T Consensus 82 ll~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvt 119 (331)
T 3c8m_A 82 ALARDFDIVVDATPASADGKKELAFYKETFENGKDVVT 119 (331)
T ss_dssp HHHSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEE
T ss_pred HhCCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEe
Confidence 2 4789999999996 777889999999999995
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.36 E-value=4.3e-05 Score=74.83 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=59.3
Q ss_pred CCCCCEEEEECcccHHHHH-HH----HHHhcCCCCCeEEE---------EEecCCCC-CceeeecCcce-EEeecCccCC
Q 017153 36 QESAPSVAVVGVTGAVGQE-FL----SVLSDRDFPYRSIK---------MLASKRSA-GKQLSFQDKAY-TVEELTEDSF 99 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~e-Ll----r~L~~~~~p~~~l~---------~v~s~~~~-g~~~~~~~~~~-~v~~~~~~~~ 99 (376)
+++++||||+|++|++|.. .+ +.+.+. +.++++ ++++++.. .+.+.... .+ .+. .+.+++
T Consensus 3 ~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~--~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~-~~~~~~-~~~~~l 78 (383)
T 3oqb_A 3 TTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQ--GGVRLKNGDRIMPDPILVGRSAEKVEALAKRF-NIARWT-TDLDAA 78 (383)
T ss_dssp CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHH--TSEECTTSCEEEEEEEEECSSSHHHHHHHHHT-TCCCEE-SCHHHH
T ss_pred CCceeEEEEEeccchhhhhhhHHHHHHHHhhc--CceeecCCcccceeeEEEcCCHHHHHHHHHHh-CCCccc-CCHHHH
Confidence 4567999999977999997 66 767665 555532 46654321 11111100 11 121 122222
Q ss_pred ---CCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 100 ---DGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 100 ---~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
.++|+|+.|+|+....+++.+++++|+.|+
T Consensus 79 l~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~ 111 (383)
T 3oqb_A 79 LADKNDTMFFDAATTQARPGLLTQAINAGKHVY 111 (383)
T ss_dssp HHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEE
T ss_pred hcCCCCCEEEECCCchHHHHHHHHHHHCCCeEE
Confidence 468999999999999999999999999988
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00032 Score=63.76 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=60.1
Q ss_pred CCEEEEECcccHHHHHHHHH-HhcCCCCCeEEEEEecCC--CCCceeeecCcceEEeecC-ccC-CCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSV-LSDRDFPYRSIKMLASKR--SAGKQLSFQDKAYTVEELT-EDS-FDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~-L~~~~~p~~~l~~v~s~~--~~g~~~~~~~~~~~v~~~~-~~~-~~~~DvVf~a~~~~~ 113 (376)
++||+|+|| |.+|+.+++. ...+ +.++++++.+.+ ..|+.+. .+.+...+ .++ +.+.|+|+.|+|+..
T Consensus 85 ~~rV~IIGA-G~~G~~La~~~~~~~--~g~~iVg~~D~dp~k~g~~i~----gv~V~~~~dl~eli~~~D~ViIAvPs~~ 157 (215)
T 2vt3_A 85 MTDVILIGV-GNLGTAFLHYNFTKN--NNTKISMAFDINESKIGTEVG----GVPVYNLDDLEQHVKDESVAILTVPAVA 157 (215)
T ss_dssp --CEEEECC-SHHHHHHHHCC--------CCEEEEEESCTTTTTCEET----TEEEEEGGGHHHHCSSCCEEEECSCHHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHhccc--CCcEEEEEEeCCHHHHHhHhc----CCeeechhhHHHHHHhCCEEEEecCchh
Confidence 578999999 9999999994 3333 678899887643 3444332 24444322 122 223399999999999
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCC
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~ 137 (376)
..+.+..+.++|++.|=+-.+.++
T Consensus 158 ~~ei~~~l~~aGi~~Ilnf~P~~l 181 (215)
T 2vt3_A 158 AQSITDRLVALGIKGILNFTPARL 181 (215)
T ss_dssp HHHHHHHHHHTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHcCCCEEEEcCceec
Confidence 999999999999996644444443
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00083 Score=58.59 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=52.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---ccC----CCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDS----FDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~----~~~~DvVf~a~~~~ 112 (376)
++|.|.||||++|+.+++.|.+++ .++.++..+........ ...+.+...| ++. +.++|+||.|.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g---~~V~~~~r~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRLPSEG--PRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCGGGSCSSS--CCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC---CeEEEEEeChhhccccc--CCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 799999999999999999998863 46766543211111110 1122332222 221 36899999998753
Q ss_pred h-----------hhhhHHHHHhCCC-eEEEcCCC
Q 017153 113 I-----------SKKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 113 ~-----------s~~~~~~~~~~G~-~VIDlS~~ 134 (376)
. .....+.+.+.|+ ++|-.|+.
T Consensus 79 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 79 NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 2 2333444445565 46655654
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00062 Score=61.41 Aligned_cols=69 Identities=25% Similarity=0.428 Sum_probs=43.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcce-EEe--ecC---ccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAY-TVE--ELT---EDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~-~v~--~~~---~~~~~~~DvVf~a~~~~ 112 (376)
.++|.|.||||++|+.+++.|.+++ .++.++..+......+.. ..+ .+. ++. .+.+.++|+||.+.+..
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKG---HEPVAMVRNEEQGPELRE--RGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSGGGHHHHHH--TTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCC---CeEEEEECChHHHHHHHh--CCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 4799999999999999999999864 367665432211111110 012 222 222 12357899999998754
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00058 Score=64.74 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=64.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CC--CCcEEEEcCCCchh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FD--GVDIALFSAGGSIS 114 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~--~~DvVf~a~~~~~s 114 (376)
+++||+|+|+||..|+.+++.|.++ + +++++..++...|+.+ ..+++.. +.++ .. ++|+++.|+|....
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~--g-~~~V~~V~p~~~g~~~----~G~~vy~-sl~el~~~~~~D~viI~tP~~~~ 77 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAY--G-TKMVGGVTPGKGGTTH----LGLPVFN-TVREAVAATGATASVIYVPAPFC 77 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH--T-CEEEEEECTTCTTCEE----TTEEEES-SHHHHHHHHCCCEEEECCCGGGH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--C-CeEEEEeCCCccccee----CCeeccC-CHHHHhhcCCCCEEEEecCHHHH
Confidence 3689999999999999999988875 3 4676666554333321 1234432 1222 23 78999999999999
Q ss_pred hhhHHHHHhCCCeE-EEcCCCC
Q 017153 115 KKFGPIAVEKGSIV-VDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~~G~~V-IDlS~~~ 135 (376)
.+.+.++.++|+++ |-.+..|
T Consensus 78 ~~~~~ea~~~Gi~~iVi~t~G~ 99 (288)
T 2nu8_A 78 KDSILEAIDAGIKLIITITEGI 99 (288)
T ss_dssp HHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHCCCCEEEEECCCC
Confidence 99999999999985 5556544
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=70.29 Aligned_cols=85 Identities=16% Similarity=0.009 Sum_probs=59.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceeeec----CcceEEeecCccCC---CCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQ----DKAYTVEELTEDSF---DGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~~~----~~~~~v~~~~~~~~---~~~DvVf~a~ 109 (376)
++||||||+ |.+|...++.| + |.++++++++++. ..+..... +....+.. +.+++ .++|+|+.|+
T Consensus 2 ~~rvgiiG~-G~~~~~~~~~l--~--~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~vD~V~I~t 75 (337)
T 3ip3_A 2 SLKICVIGS-SGHFRYALEGL--D--EECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYN-NWWEMLEKEKPDILVINT 75 (337)
T ss_dssp CEEEEEECS-SSCHHHHHTTC--C--TTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECS-SHHHHHHHHCCSEEEECS
T ss_pred ceEEEEEcc-chhHHHHHHhc--C--CCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccC-CHHHHhcCCCCCEEEEeC
Confidence 589999998 55566778777 4 8999999987653 12221110 11112221 22332 3699999999
Q ss_pred CCchhhhhHHHHHhCCCeEE
Q 017153 110 GGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VI 129 (376)
|+....+++.+++++|+.|+
T Consensus 76 p~~~H~~~~~~al~aGkhVl 95 (337)
T 3ip3_A 76 VFSLNGKILLEALERKIHAF 95 (337)
T ss_dssp SHHHHHHHHHHHHHTTCEEE
T ss_pred CcchHHHHHHHHHHCCCcEE
Confidence 99999999999999999987
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00011 Score=65.62 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=57.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec-C-----cceEEeecCccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-D-----KAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~-~-----~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
|||+|+|++|++|+.+++.|.+++ .++..+. ++. .-+.+... + .++..... .+.+.++|+||.|++..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g---~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~Vi~~~~~~ 75 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLG---HEIVVGS-RREEKAEAKAAEYRRIAGDASITGMKN-EDAAEACDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEE-SSHHHHHHHHHHHHHHHSSCCEEEEEH-HHHHHHCSEEEECSCHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCC---CEEEEEe-CCHHHHHHHHHHhccccccCCCChhhH-HHHHhcCCEEEEeCChh
Confidence 589999978999999999998863 3665443 321 11111110 0 11222111 12246799999999987
Q ss_pred hhhhhHHHHHh--CCCeEEEcCCCCC
Q 017153 113 ISKKFGPIAVE--KGSIVVDNSSAFR 136 (376)
Q Consensus 113 ~s~~~~~~~~~--~G~~VIDlS~~~R 136 (376)
...+....+.+ .+..+||+++.+.
T Consensus 76 ~~~~~~~~l~~~~~~~~vi~~~~g~~ 101 (212)
T 1jay_A 76 HAIDTARDLKNILREKIVVSPLVPVS 101 (212)
T ss_dssp HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 76666554322 4889999998664
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00085 Score=59.83 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=55.1
Q ss_pred CEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecCCC-CCceeeecCcceEEeecC---ccC----CCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT---EDS----FDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~---~~~----~~~~DvVf~a~~ 110 (376)
.+|.|.||||++|+.+++.|. +. ..+++++..+.. ..+.+......+.+...| ++. +.++|+||.+.+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag 82 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT---DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM 82 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC---CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC---CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence 459999999999999999998 64 447766543222 111110011223333222 221 368999999987
Q ss_pred Cch--hhhhHHHHHhCCC-eEEEcCCCC
Q 017153 111 GSI--SKKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 111 ~~~--s~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
..- .....+.+.+.|. ++|-.|+..
T Consensus 83 ~~n~~~~~~~~~~~~~~~~~iv~iSs~~ 110 (221)
T 3r6d_A 83 ESGSDMASIVKALSRXNIRRVIGVSMAG 110 (221)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred CCChhHHHHHHHHHhcCCCeEEEEeece
Confidence 521 4455555666775 577666643
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00086 Score=59.28 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=52.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---c--cCCCCCcEEEEcCCCch-
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---E--DSFDGVDIALFSAGGSI- 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~--~~~~~~DvVf~a~~~~~- 113 (376)
|||.|.||||++|+.|++.|.+++ .++.++..+......+. ..+.+...| + +.+.++|+||.|.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 74 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRG---HEVTAIVRNAGKITQTH---KDINILQKDIFDLTLSDLSDQNVVVDAYGISPD 74 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCSHHHHHHC---SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCC---CEEEEEEcCchhhhhcc---CCCeEEeccccChhhhhhcCCCEEEECCcCCcc
Confidence 589999999999999999999873 47766653221111110 122222222 1 23578999999987632
Q ss_pred --------hhhhHHHHHhCC-CeEEEcCCC
Q 017153 114 --------SKKFGPIAVEKG-SIVVDNSSA 134 (376)
Q Consensus 114 --------s~~~~~~~~~~G-~~VIDlS~~ 134 (376)
+....+.+.+.| .++|-.|+.
T Consensus 75 ~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~ 104 (221)
T 3ew7_A 75 EAEKHVTSLDHLISVLNGTVSPRLLVVGGA 104 (221)
T ss_dssp TTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred ccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence 133334444453 456666654
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00038 Score=67.24 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCC----CCCeEEEEEecCCCCC--ceee------ec--CcceEEeecCccC-C--
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD----FPYRSIKMLASKRSAG--KQLS------FQ--DKAYTVEELTEDS-F-- 99 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~----~p~~~l~~v~s~~~~g--~~~~------~~--~~~~~v~~~~~~~-~-- 99 (376)
|+++||+|+|. |.+|+.+++.|.++. .+.++++++++++... +.+. .. ...+.-...+.++ +
T Consensus 2 Mk~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~ 80 (325)
T 3ing_A 2 MKEIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMG 80 (325)
T ss_dssp -CEEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTT
T ss_pred CceEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcC
Confidence 34699999996 999999999997620 1678999988765321 0000 00 0001000112222 2
Q ss_pred CCCcEEEEcCCCch----hhhhHHHHHhCCCeEEEc
Q 017153 100 DGVDIALFSAGGSI----SKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 100 ~~~DvVf~a~~~~~----s~~~~~~~~~~G~~VIDl 131 (376)
.++|+|+.|+|+.. +.++..+++++|+.||..
T Consensus 81 ~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 81 EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 47899999998753 257888899999999963
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00031 Score=67.33 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=57.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cc---eeee-cCcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QLSF-QDKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~---~~~~-~~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
++||+|+|+ |++|..+.+.|.+.+ ..++.+. +++.. .+ .... ..... ......+.+.++|+||+|+|..
T Consensus 24 ~m~IgvIG~-G~mG~~lA~~L~~~G--~~~V~~~-dr~~~~~~~~~~~~~~~~~~g~-~~~s~~e~~~~aDvVi~avp~~ 98 (317)
T 4ezb_A 24 MTTIAFIGF-GEAAQSIAGGLGGRN--AARLAAY-DLRFNDPAASGALRARAAELGV-EPLDDVAGIACADVVLSLVVGA 98 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTT--CSEEEEE-CGGGGCTTTHHHHHHHHHHTTC-EEESSGGGGGGCSEEEECCCGG
T ss_pred CCeEEEECc-cHHHHHHHHHHHHcC--CCeEEEE-eCCCccccchHHHHHHHHHCCC-CCCCHHHHHhcCCEEEEecCCH
Confidence 489999997 999999999999874 1355544 33220 10 1000 00112 2101123357899999999998
Q ss_pred hhhhhHHHHH---hCCCeEEEcCCC
Q 017153 113 ISKKFGPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~~~~~~~~---~~G~~VIDlS~~ 134 (376)
...+.+..+. ..|..|||.|+.
T Consensus 99 ~~~~~~~~i~~~l~~~~ivv~~st~ 123 (317)
T 4ezb_A 99 ATKAVAASAAPHLSDEAVFIDLNSV 123 (317)
T ss_dssp GHHHHHHHHGGGCCTTCEEEECCSC
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCC
Confidence 8777666554 368889999865
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00035 Score=62.14 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=52.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---c--cCCCCCcEEEEcCCCc--
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---E--DSFDGVDIALFSAGGS-- 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~--~~~~~~DvVf~a~~~~-- 112 (376)
|||.|.||||++|+.|++.|.+++ .++.++..+......+ ....+.+...| + +.+.++|+||.|.+..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 75 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRG---HEVLAVVRDPQKAADR--LGATVATLVKEPLVLTEADLDSVDAVVDALSVPWG 75 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCHHHHHHH--TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCC---CEEEEEEecccccccc--cCCCceEEecccccccHhhcccCCEEEECCccCCC
Confidence 589999999999999999998873 4676664321110000 00122222222 1 2357899999998763
Q ss_pred ---------hhhhhHHHHHhCCCeEEEcCCC
Q 017153 113 ---------ISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ---------~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
.+...++.+.+.|.++|-+|+.
T Consensus 76 ~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~ 106 (224)
T 3h2s_A 76 SGRGYLHLDFATHLVSLLRNSDTLAVFILGS 106 (224)
T ss_dssp SSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred cchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 1122222333456667766653
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00077 Score=61.07 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeeecCcceEEeecC-ccC-C-CCCcEEEEcCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQDKAYTVEELT-EDS-F-DGVDIALFSAGGS 112 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~~~~~~~v~~~~-~~~-~-~~~DvVf~a~~~~ 112 (376)
+.+||+|+|+ |.+|+.+++.+..+ . .++++++.+.+ ..|+.+. .+.+...+ .++ + .++|+|+.|+|+.
T Consensus 79 ~~~rV~IIGa-G~~G~~la~~~~~~-~-g~~iVg~~D~dp~k~g~~i~----gv~V~~~~dl~ell~~~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 79 RKWGLCIVGM-GRLGSALADYPGFG-E-SFELRGFFDVDPEKVGRPVR----GGVIEHVDLLPQRVPGRIEIALLTVPRE 151 (211)
T ss_dssp SCEEEEEECC-SHHHHHHHHCSCCC-S-SEEEEEEEESCTTTTTCEET----TEEEEEGGGHHHHSTTTCCEEEECSCHH
T ss_pred CCCEEEEECc-cHHHHHHHHhHhhc-C-CcEEEEEEeCCHHHHhhhhc----CCeeecHHhHHHHHHcCCCEEEEeCCch
Confidence 3579999999 99999999965444 3 78999887643 3444332 23443322 111 2 2799999999999
Q ss_pred hhhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
...+.+..+.++|++.|=+-.+.
T Consensus 152 ~~~ei~~~l~~aGi~~Ilnf~P~ 174 (211)
T 2dt5_A 152 AAQKAADLLVAAGIKGILNFAPV 174 (211)
T ss_dssp HHHHHHHHHHHHTCCEEEECSSS
T ss_pred hHHHHHHHHHHcCCCEEEECCcc
Confidence 99999999999999966443443
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00013 Score=69.75 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=57.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCc--eeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGK--QLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~--~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s 114 (376)
++||+|||+ |++|..+.+.|.+.+| -++. +.+++. ..+ .+... .+.... ++. .+.++|+||+|+|....
T Consensus 24 ~~~I~iIG~-G~mG~~~A~~L~~~G~--~~V~-~~dr~~~~~~~~~~~~~--g~~~~~-~~~e~~~~aDvVi~~vp~~~~ 96 (312)
T 3qsg_A 24 AMKLGFIGF-GEAASAIASGLRQAGA--IDMA-AYDAASAESWRPRAEEL--GVSCKA-SVAEVAGECDVIFSLVTAQAA 96 (312)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHHSC--CEEE-EECSSCHHHHHHHHHHT--TCEECS-CHHHHHHHCSEEEECSCTTTH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC--CeEE-EEcCCCCHHHHHHHHHC--CCEEeC-CHHHHHhcCCEEEEecCchhH
Confidence 489999998 9999999999987643 1444 334321 111 11111 122221 222 24679999999999887
Q ss_pred hhhHHHHHh---CCCeEEEcCCCC
Q 017153 115 KKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
.+.+..+.+ .|..|||+|+..
T Consensus 97 ~~~~~~l~~~l~~~~ivvd~st~~ 120 (312)
T 3qsg_A 97 LEVAQQAGPHLCEGALYADFTSCS 120 (312)
T ss_dssp HHHHHHHGGGCCTTCEEEECCCCC
T ss_pred HHHHHhhHhhcCCCCEEEEcCCCC
Confidence 777665543 678899998764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00055 Score=64.31 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=54.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCc----cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTE----DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~----~~~~~~DvVf~a~~~~ 112 (376)
++||.|.||||++|+.|++.|.+++ .++.++....... .+. .+.+. ++.+ +.+.++|+||.|.+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~-~~~----~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~~ 73 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG---NTPIILTRSIGNK-AIN----DYEYRVSDYTLEDLINQLNDVDAVVHLAATR 73 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESCCC----------CCEEEECCCCHHHHHHHTTTCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC---CEEEEEeCCCCcc-cCC----ceEEEEccccHHHHHHhhcCCCEEEEccccC
Confidence 4799999999999999999998863 3666655331111 111 12222 2221 1246899999987643
Q ss_pred h--------------hhhhHHHHHhCCCe-EEEcCCCC
Q 017153 113 I--------------SKKFGPIAVEKGSI-VVDNSSAF 135 (376)
Q Consensus 113 ~--------------s~~~~~~~~~~G~~-VIDlS~~~ 135 (376)
. +...++.+.+.|++ +|=+|+..
T Consensus 74 ~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~ 111 (311)
T 3m2p_A 74 GSQGKISEFHDNEILTQNLYDACYENNISNIVYASTIS 111 (311)
T ss_dssp CSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHH
Confidence 1 23444555667876 77677653
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00018 Score=70.18 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=59.0
Q ss_pred CCCEEEEECcccHHHH-HHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-C--CCCcEEEEcCCCc
Q 017153 38 SAPSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGGS 112 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~-eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~~ 112 (376)
+++||||||+ |.+|. .++..+. + |.++++++++++..- +.+........+.. +.++ + .++|+|+.|+|+.
T Consensus 25 ~~irvgiiG~-G~~~~~~~~~~~~-~--~~~~lvav~d~~~~~a~~~a~~~~~~~~~~-~~~~ll~~~~vD~V~I~tp~~ 99 (361)
T 3u3x_A 25 DELRFAAVGL-NHNHIYGQVNCLL-R--AGARLAGFHEKDDALAAEFSAVYADARRIA-TAEEILEDENIGLIVSAAVSS 99 (361)
T ss_dssp -CCEEEEECC-CSTTHHHHHHHHH-H--TTCEEEEEECSCHHHHHHHHHHSSSCCEES-CHHHHHTCTTCCEEEECCCHH
T ss_pred cCcEEEEECc-CHHHHHHHHHHhh-c--CCcEEEEEEcCCHHHHHHHHHHcCCCcccC-CHHHHhcCCCCCEEEEeCChH
Confidence 3689999998 88885 4666665 3 889999998764311 11111111112221 2222 2 3699999999999
Q ss_pred hhhhhHHHHHhCCCeEE
Q 017153 113 ISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VI 129 (376)
...+++.+++++|..|+
T Consensus 100 ~H~~~~~~al~aGkhVl 116 (361)
T 3u3x_A 100 ERAELAIRAMQHGKDVL 116 (361)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 99999999999999887
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00039 Score=65.43 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
++||+|||+ |.+|..+++.|..++++..++. +.+++.. -+.+... ..+.+.....+.+.++|+||+|++.....+.
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~-v~dr~~~~~~~l~~~-~gi~~~~~~~~~~~~aDvVilav~p~~~~~v 79 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDPNRIC-VTNRSLDKLDFFKEK-CGVHTTQDNRQGALNADVVVLAVKPHQIKMV 79 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEE-EECSSSHHHHHHHHT-TCCEEESCHHHHHSSCSEEEECSCGGGHHHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEE-EEeCCHHHHHHHHHH-cCCEEeCChHHHHhcCCeEEEEeCHHHHHHH
Confidence 589999999 9999999999988755433554 3333221 0111110 0223322112335789999999998777776
Q ss_pred HHHH----HhCCCeEEEcCCCCCCC-------CCCc--EEeeccCHHhhcCcccCCCCCc-EEEcCCchHHHHHHHHhHH
Q 017153 118 GPIA----VEKGSIVVDNSSAFRMV-------ENVP--LVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL 183 (376)
Q Consensus 118 ~~~~----~~~G~~VIDlS~~~R~~-------~~~~--~~lpevN~~~i~~~~~~~~~~~-iVa~PgC~~ta~~l~L~pL 183 (376)
.+.+ +..+..||++++....+ .+.+ -..|. ++..+.. ... ++.++.+..-... .+.+|
T Consensus 80 l~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn-~p~~v~~------g~~~l~~~~~~~~~~~~-~v~~l 151 (280)
T 3tri_A 80 CEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPN-TPSSVRA------GATGLFANETVDKDQKN-LAESI 151 (280)
T ss_dssp HHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECC-GGGGGTC------EEEEEECCTTSCHHHHH-HHHHH
T ss_pred HHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecC-ChHHhcC------ccEEEEeCCCCCHHHHH-HHHHH
Confidence 6655 34566888888776432 1112 23342 3333331 122 3445555555543 35677
Q ss_pred HHhCCCcEEEE------EEEccccccChH
Q 017153 184 HRRAKVTRMVV------STYQAASGAGAA 206 (376)
Q Consensus 184 ~~~~~i~~v~v------~t~~gvSGaGr~ 206 (376)
++..|- .+.+ +...++||.|-.
T Consensus 152 ~~~iG~-~~~v~~E~~~d~~talsgsgpa 179 (280)
T 3tri_A 152 MRAVGL-VIWVSSEDQIEKIAALSGSGPA 179 (280)
T ss_dssp HGGGEE-EEECSSHHHHHHHHHHTTSHHH
T ss_pred HHHCCC-eEEECCHHHhhHHHHHhccHHH
Confidence 776653 2222 334566776644
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00086 Score=63.75 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=64.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-C--CCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~--~~DvVf~a~~~~~s~ 115 (376)
+.+|+|+|+||..|+.+++.|.+++ +++++...+...|+.+ ..++++. +.+++ . ++|+++.++|.....
T Consensus 13 ~~~v~V~Gasg~~G~~~~~~l~~~g---~~~V~~VnP~~~g~~i----~G~~vy~-sl~el~~~~~~Dv~ii~vp~~~~~ 84 (294)
T 2yv1_A 13 NTKAIVQGITGRQGSFHTKKMLECG---TKIVGGVTPGKGGQNV----HGVPVFD-TVKEAVKETDANASVIFVPAPFAK 84 (294)
T ss_dssp TCCEEEETTTSHHHHHHHHHHHHTT---CCEEEEECTTCTTCEE----TTEEEES-SHHHHHHHHCCCEEEECCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCC---CeEEEEeCCCCCCceE----CCEeeeC-CHHHHhhcCCCCEEEEccCHHHHH
Confidence 4789999999999999999998863 3455444454434432 1244443 12222 3 789999999999999
Q ss_pred hhHHHHHhCCCe-EEEcCCCC
Q 017153 116 KFGPIAVEKGSI-VVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~~~G~~-VIDlS~~~ 135 (376)
+.+.++.++|++ +|-.+..|
T Consensus 85 ~~v~ea~~~Gi~~vVi~t~G~ 105 (294)
T 2yv1_A 85 DAVFEAIDAGIELIVVITEHI 105 (294)
T ss_dssp HHHHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHCCCCEEEEECCCC
Confidence 999999999999 66667666
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00099 Score=63.14 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=64.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-C--CCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~--~~DvVf~a~~~~~s~ 115 (376)
.+||+|+|+||..|+.+++.+.++ .+++++...+...|+.+ ..+++.+ +.+++ . ++|+++.++|.....
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~---g~~~v~~VnP~~~g~~i----~G~~vy~-sl~el~~~~~~Dv~Ii~vp~~~~~ 78 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTY---GTKIVAGVTPGKGGMEV----LGVPVYD-TVKEAVAHHEVDASIIFVPAPAAA 78 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCTTCEE----TTEEEES-SHHHHHHHSCCSEEEECCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHc---CCeEEEEECCCCCCceE----CCEEeeC-CHHHHhhcCCCCEEEEecCHHHHH
Confidence 589999999999999999988875 34666555554434332 1244442 11222 3 789999999999999
Q ss_pred hhHHHHHhCCCe-EEEcCCCC
Q 017153 116 KFGPIAVEKGSI-VVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~~~G~~-VIDlS~~~ 135 (376)
+.+.++.++|++ +|-.+.-|
T Consensus 79 ~~~~ea~~~Gi~~vVi~t~G~ 99 (288)
T 1oi7_A 79 DAALEAAHAGIPLIVLITEGI 99 (288)
T ss_dssp HHHHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHCCCCEEEEECCCC
Confidence 999999999999 66566655
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=67.30 Aligned_cols=88 Identities=14% Similarity=0.165 Sum_probs=53.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-K 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~ 115 (376)
++||+|+|+ |.+|..+.+.|.+.+| ++... +++.. -+.+... ...... ++. .+.++|+||+|+|.... .
T Consensus 21 m~~I~iIG~-G~mG~~~A~~l~~~G~---~V~~~-dr~~~~~~~l~~~--g~~~~~-~~~~~~~~aDvvi~~vp~~~~~~ 92 (310)
T 3doj_A 21 MMEVGFLGL-GIMGKAMSMNLLKNGF---KVTVW-NRTLSKCDELVEH--GASVCE-SPAEVIKKCKYTIAMLSDPCAAL 92 (310)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSSGGGGHHHHHT--TCEECS-SHHHHHHHCSEEEECCSSHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHHC--CCeEcC-CHHHHHHhCCEEEEEcCCHHHHH
Confidence 489999998 9999999999988744 55543 33221 1111111 122221 222 24679999999997533 2
Q ss_pred hhH---HH---HHhCCCeEEEcCCC
Q 017153 116 KFG---PI---AVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~---~~---~~~~G~~VIDlS~~ 134 (376)
+.. .. ....|..|||.|+.
T Consensus 93 ~v~~~~~~l~~~l~~g~~vv~~st~ 117 (310)
T 3doj_A 93 SVVFDKGGVLEQICEGKGYIDMSTV 117 (310)
T ss_dssp HHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred HHHhCchhhhhccCCCCEEEECCCC
Confidence 222 11 23468889999875
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0019 Score=59.90 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=58.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec---Ccc--eEEeecCccCCCCCcEEEEcCCCchh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ---DKA--YTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~---~~~--~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
|||+|+|+ |.+|..+...|.+.+| ++..+..+...-+.+... +.. ..+...+.+.+.++|+||+|++....
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~---~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~ 76 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGH---EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQV 76 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGH
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCC---CEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhH
Confidence 58999999 9999999999987643 665543222211122211 111 11112123334689999999999887
Q ss_pred hhhHHHHHh---CCCeEEEcCCCC
Q 017153 115 KKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
.+..+.+.+ .+..|||++..+
T Consensus 77 ~~v~~~l~~~l~~~~~vv~~~~g~ 100 (291)
T 1ks9_A 77 SDAVKSLASTLPVTTPILLIHNGM 100 (291)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSS
T ss_pred HHHHHHHHhhCCCCCEEEEecCCC
Confidence 777766643 477899987765
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0014 Score=63.09 Aligned_cols=94 Identities=16% Similarity=0.073 Sum_probs=56.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc----C----CCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED----S----FDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~----~----~~~~DvVf~a~~ 110 (376)
++||.|.||||++|+.|++.|.++ +..++.++......-..+.. ...+.+...|.. . +.++|+||.|.+
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~r~~~~~~~~~~-~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~ 100 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILET--TDWEVFGMDMQTDRLGDLVK-HERMHFFEGDITINKEWVEYHVKKCDVILPLVA 100 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHH--SSCEEEEEESCCTTTGGGGG-STTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred CCEEEEECCCChHHHHHHHHHHhC--CCCEEEEEeCChhhhhhhcc-CCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence 479999999999999999999876 45677776533221111111 122333322221 1 247999998765
Q ss_pred Cchh------------------hhhHHHHHhCCCeEEEcCCCC
Q 017153 111 GSIS------------------KKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~~s------------------~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.... ....+.+.+.|.++|=+|+..
T Consensus 101 ~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~ 143 (372)
T 3slg_A 101 IATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSE 143 (372)
T ss_dssp CCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGG
T ss_pred cccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHH
Confidence 4221 223344445567788788754
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0037 Score=60.00 Aligned_cols=100 Identities=19% Similarity=0.065 Sum_probs=57.6
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhc--CCCCCeEEEEEecCCCC-----------CceeeecCcceEEeecC---c
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSD--RDFPYRSIKMLASKRSA-----------GKQLSFQDKAYTVEELT---E 96 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~--~~~p~~~l~~v~s~~~~-----------g~~~~~~~~~~~v~~~~---~ 96 (376)
|+|.++.++|.|.||||++|+.|++.|.+ . ..+++++...... ++........+.+...| +
T Consensus 4 ~~~~~~~~~vlVTGatG~IG~~l~~~L~~~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 80 (362)
T 3sxp_A 4 IDDELENQTILITGGAGFVGSNLAFHFQENHP---KAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNP 80 (362)
T ss_dssp SSCCCTTCEEEEETTTSHHHHHHHHHHHHHCT---TSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCH
T ss_pred cchhcCCCEEEEECCCCHHHHHHHHHHHhhCC---CCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCH
Confidence 33444568999999999999999999987 5 3467666432210 11100111112222222 1
Q ss_pred c----C-CCCCcEEEEcCCCch----------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 97 D----S-FDGVDIALFSAGGSI----------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 97 ~----~-~~~~DvVf~a~~~~~----------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+ . ..++|+||.|.+... +....+.+.+.|+++|=.|+..
T Consensus 81 ~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~ 140 (362)
T 3sxp_A 81 LDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAG 140 (362)
T ss_dssp HHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred HHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHH
Confidence 1 1 358999999876322 1223344456788888788743
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00053 Score=64.11 Aligned_cols=61 Identities=28% Similarity=0.401 Sum_probs=41.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
|||.|.|||||+|+.|++.|.+++| ++.++..+...+ .+.....+.+.+.++|+|+-+.+.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~---~V~~l~R~~~~~--------~~~~~~~~~~~l~~~d~vihla~~ 61 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGH---EVTLVSRKPGPG--------RITWDELAASGLPSCDAAVNLAGE 61 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEESSCCTT--------EEEHHHHHHHCCCSCSEEEECCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCcC--------eeecchhhHhhccCCCEEEEeccC
Confidence 7899999999999999999988755 676664321111 111122334456789999987653
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00016 Score=71.95 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=59.5
Q ss_pred CCCEEEEECcccH---HHHHHHHHHhcCCCCCeEEEE-EecCCCC-Cceeee--cCcceEEeecCccC-C-------CCC
Q 017153 38 SAPSVAVVGVTGA---VGQEFLSVLSDRDFPYRSIKM-LASKRSA-GKQLSF--QDKAYTVEELTEDS-F-------DGV 102 (376)
Q Consensus 38 ~~irVaIvGaTG~---vG~eLlr~L~~~~~p~~~l~~-v~s~~~~-g~~~~~--~~~~~~v~~~~~~~-~-------~~~ 102 (376)
+++||||||+ |. +|...++.+... +.+++++ +.+++.. .+.+.. +.....+.. +.++ + .++
T Consensus 36 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~--~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~-~~~~ll~~~~~~~~~v 111 (417)
T 3v5n_A 36 KRIRLGMVGG-GSGAFIGAVHRIAARLD--DHYELVAGALSSTPEKAEASGRELGLDPSRVYS-DFKEMAIREAKLKNGI 111 (417)
T ss_dssp CCEEEEEESC-C--CHHHHHHHHHHHHT--SCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCS-CHHHHHHHHHHCTTCC
T ss_pred CcceEEEEcC-CCchHHHHHHHHHHhhC--CCcEEEEEEeCCCHHHHHHHHHHcCCCcccccC-CHHHHHhcccccCCCC
Confidence 4689999998 87 999988888776 7899986 7665321 111111 110001111 2222 1 358
Q ss_pred cEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 103 DIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 103 DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
|+|+.|+|+....+++.+++++|+.|+
T Consensus 112 D~V~I~tp~~~H~~~~~~al~aGkhVl 138 (417)
T 3v5n_A 112 EAVAIVTPNHVHYAAAKEFLKRGIHVI 138 (417)
T ss_dssp SEEEECSCTTSHHHHHHHHHTTTCEEE
T ss_pred cEEEECCCcHHHHHHHHHHHhCCCeEE
Confidence 999999999999999999999999887
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00037 Score=68.03 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec--------C----cceEEeecCc-cCCCCC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ--------D----KAYTVEELTE-DSFDGV 102 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~--------~----~~~~v~~~~~-~~~~~~ 102 (376)
+++|||+|+|+ |.+|..+...|.+.+| ++... +++.. -+.+... + ..+.+. .+. +.+.++
T Consensus 27 ~~~mkI~VIGa-G~mG~alA~~La~~G~---~V~l~-~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~ea~~~a 100 (356)
T 3k96_A 27 PFKHPIAILGA-GSWGTALALVLARKGQ---KVRLW-SYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKASLEGV 100 (356)
T ss_dssp CCCSCEEEECC-SHHHHHHHHHHHTTTC---CEEEE-CSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHHHHTTC
T ss_pred ccCCeEEEECc-cHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHHHHhcC
Confidence 44589999998 9999999999998754 44433 33211 0011000 0 012222 122 235789
Q ss_pred cEEEEcCCCchhhhhHHHHH---hCCCeEEEcCCCCC
Q 017153 103 DIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFR 136 (376)
Q Consensus 103 DvVf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~R 136 (376)
|+||+|+|.....+..+.+. ..+..||+++..+-
T Consensus 101 DvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 101 TDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp CEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99999999987777776654 35788999887653
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00077 Score=62.80 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=56.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCc-cCCC-CCcEEEEcCCCchhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTE-DSFD-GVDIALFSAGGSISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~-~~~~-~~DvVf~a~~~~~s~~ 116 (376)
+||+|+|+ |.+|..+.+.|...+++ .++.+ .+++..- +.....+...... .+. +.+. ++|+||+|+|.....+
T Consensus 2 ~~I~iIG~-G~mG~~~a~~l~~~g~~-~~V~~-~d~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~aDvVilavp~~~~~~ 77 (281)
T 2g5c_A 2 QNVLIVGV-GFMGGSFAKSLRRSGFK-GKIYG-YDINPESISKAVDLGIIDEGT-TSIAKVEDFSPDFVMLSSPVRTFRE 77 (281)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCC-SEEEE-ECSCHHHHHHHHHTTSCSEEE-SCGGGGGGTCCSEEEECSCHHHHHH
T ss_pred cEEEEEec-CHHHHHHHHHHHhcCCC-cEEEE-EeCCHHHHHHHHHCCCccccc-CCHHHHhcCCCCEEEEcCCHHHHHH
Confidence 68999997 99999999999876442 35543 3332110 0010111110111 122 3356 8999999999988777
Q ss_pred hHHHHH---hCCCeEEEcCCC
Q 017153 117 FGPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 117 ~~~~~~---~~G~~VIDlS~~ 134 (376)
....+. ..|..|+|.++.
T Consensus 78 v~~~l~~~l~~~~iv~~~~~~ 98 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTDQGSV 98 (281)
T ss_dssp HHHHHHHHSCTTCEEEECCSC
T ss_pred HHHHHHhhCCCCcEEEECCCC
Confidence 766553 467889987764
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00056 Score=68.74 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=61.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC-------CCCeEEEEEecCCCCCceeeecCcceEEeecCccCC---CCCcEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF---DGVDIALF 107 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~-------~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~---~~~DvVf~ 107 (376)
+++||||+|. |.+|+.+++.|.+|. .+.++++++++++.. +.-... ....+.. +.+++ .++|+|+.
T Consensus 9 k~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~-~~~~~~-~~~~~~~-d~~ell~d~diDvVve 84 (444)
T 3mtj_A 9 KPIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLD-KAEALA-GGLPLTT-NPFDVVDDPEIDIVVE 84 (444)
T ss_dssp SCEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHH-HHHHHH-TTCCEES-CTHHHHTCTTCCEEEE
T ss_pred CcccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHH-Hhhhhc-ccCcccC-CHHHHhcCCCCCEEEE
Confidence 3689999996 999999999886531 167899998876421 100000 0112221 22222 47899999
Q ss_pred cCCC-chhhhhHHHHHhCCCeEEE
Q 017153 108 SAGG-SISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 108 a~~~-~~s~~~~~~~~~~G~~VID 130 (376)
|+|+ ..+.+++.+++++|..||-
T Consensus 85 ~tp~~~~h~~~~~~AL~aGKhVvt 108 (444)
T 3mtj_A 85 LIGGLEPARELVMQAIANGKHVVT 108 (444)
T ss_dssp CCCSSTTHHHHHHHHHHTTCEEEE
T ss_pred cCCCchHHHHHHHHHHHcCCEEEE
Confidence 9997 8888999999999999984
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.001 Score=63.27 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=64.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-C--C-CcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--G-VDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~--~-~DvVf~a~~~~~s 114 (376)
+.+|+|+|+||..|+.+++.|.+++ +++++..++...|+.+ ..+++++ +.+++ . + +|+++.++|....
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g---~~~v~~VnP~~~g~~i----~G~~vy~-sl~el~~~~~~~DvaIi~vp~~~~ 84 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYG---TKVVAGVTPGKGGSEV----HGVPVYD-SVKEALAEHPEINTSIVFVPAPFA 84 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECTTCTTCEE----TTEEEES-SHHHHHHHCTTCCEEEECCCGGGH
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCC---CcEEEEeCCCCCCceE----CCEeeeC-CHHHHhhcCCCCCEEEEecCHHHH
Confidence 5789999999999999999888753 4555545555444432 1244442 11222 2 4 8999999999999
Q ss_pred hhhHHHHHhCCCe-EEEcCCCC
Q 017153 115 KKFGPIAVEKGSI-VVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~~G~~-VIDlS~~~ 135 (376)
.+.+.++.++|++ +|-.+..|
T Consensus 85 ~~~v~ea~~~Gi~~vVi~t~G~ 106 (297)
T 2yv2_A 85 PDAVYEAVDAGIRLVVVITEGI 106 (297)
T ss_dssp HHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHCCCCEEEEECCCC
Confidence 9999999999999 66667666
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00064 Score=61.25 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=54.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.+||+|+|+ |.+|+.+++.|...++ ++.++ +++.. .+.+.. ..+.+... .+.+.++|+||+|++.....+.
T Consensus 28 ~~~I~iiG~-G~~G~~la~~l~~~g~---~V~~~-~r~~~~~~~~~~--~g~~~~~~-~~~~~~~DvVi~av~~~~~~~v 99 (215)
T 2vns_A 28 APKVGILGS-GDFARSLATRLVGSGF---KVVVG-SRNPKRTARLFP--SAAQVTFQ-EEAVSSPEVIFVAVFREHYSSL 99 (215)
T ss_dssp -CCEEEECC-SHHHHHHHHHHHHTTC---CEEEE-ESSHHHHHHHSB--TTSEEEEH-HHHTTSCSEEEECSCGGGSGGG
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHH--cCCceecH-HHHHhCCCEEEECCChHHHHHH
Confidence 478999995 9999999999987643 45433 33211 111111 12222221 2335789999999998654444
Q ss_pred HH--HHHhCCCeEEEcCCCC
Q 017153 118 GP--IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~--~~~~~G~~VIDlS~~~ 135 (376)
.. .+. .|..|||+++..
T Consensus 100 ~~l~~~~-~~~~vv~~s~g~ 118 (215)
T 2vns_A 100 CSLSDQL-AGKILVDVSNPT 118 (215)
T ss_dssp GGGHHHH-TTCEEEECCCCC
T ss_pred HHHHHhc-CCCEEEEeCCCc
Confidence 32 233 688999999875
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0012 Score=62.09 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=53.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce--ee-ecCcceEEeecC---ccC----CCCCcEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS-FQDKAYTVEELT---EDS----FDGVDIALF 107 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~--~~-~~~~~~~v~~~~---~~~----~~~~DvVf~ 107 (376)
|+++|.|.||||++|+.+++.|.++++ ++.++.. +...+. +. .....+.+...| ++. +.++|+||.
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l~R-~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGH---PTYVFTR-PNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTC---CEEEEEC-TTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCC---cEEEEEC-CCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 345899999999999999999988743 5555543 221111 10 001123333222 222 468999999
Q ss_pred cCCCc---hhhhhHHHHHhCC-CeEEEcC
Q 017153 108 SAGGS---ISKKFGPIAVEKG-SIVVDNS 132 (376)
Q Consensus 108 a~~~~---~s~~~~~~~~~~G-~~VIDlS 132 (376)
|.+.. ......+.+.++| ++.|-.|
T Consensus 86 ~a~~~~~~~~~~l~~aa~~~g~v~~~v~S 114 (318)
T 2r6j_A 86 ALAFPQILDQFKILEAIKVAGNIKRFLPS 114 (318)
T ss_dssp CCCGGGSTTHHHHHHHHHHHCCCCEEECS
T ss_pred CCchhhhHHHHHHHHHHHhcCCCCEEEee
Confidence 98742 3445556666677 6544243
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00026 Score=69.86 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=61.0
Q ss_pred CCCCEEEEECcccH---HHHHHHHHHhcCCCCCeEEEE-EecCCCC-Cceeee--cCcceEEeecCccCC--------CC
Q 017153 37 ESAPSVAVVGVTGA---VGQEFLSVLSDRDFPYRSIKM-LASKRSA-GKQLSF--QDKAYTVEELTEDSF--------DG 101 (376)
Q Consensus 37 ~~~irVaIvGaTG~---vG~eLlr~L~~~~~p~~~l~~-v~s~~~~-g~~~~~--~~~~~~v~~~~~~~~--------~~ 101 (376)
|+++||||||+ |. +|+..++.+... +.+++++ +.+++.. .+.+.. +.....+.. +.+++ .+
T Consensus 10 m~~~rvgiiG~-G~~~~ig~~h~~~~~~~--~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~-~~~~ll~~~~~~~~~ 85 (398)
T 3dty_A 10 PQPIRWAMVGG-GSQSQIGYIHRCAALRD--NTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYA-DYLSMFEQEARRADG 85 (398)
T ss_dssp CSCEEEEEEEC-CTTCSSHHHHHHHHHGG--GSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCS-SHHHHHHHHTTCTTC
T ss_pred cCcceEEEEcC-CccchhHHHHHHHHhhC--CCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeC-CHHHHHhcccccCCC
Confidence 44699999998 88 999998888776 7899987 6655321 111111 110001111 11221 35
Q ss_pred CcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 102 VDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 102 ~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
+|+|+.|+|+....+++.+++++|..|+
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~aGkhVl 113 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALEAGLHVV 113 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHHTTCEEE
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999999999887
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.02 E-value=7.6e-05 Score=69.96 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~ 116 (376)
+|||+|||+ |.+|..+++.|..+ .+++.+.+++.. .+.+.... .. . ..+.++ +.++|+||+|+|.....+
T Consensus 2 ~m~I~iIG~-G~mG~~la~~l~~~----~~v~~v~~~~~~~~~~~~~~~-g~-~-~~~~~~~~~~~DvVilav~~~~~~~ 73 (276)
T 2i76_A 2 SLVLNFVGT-GTLTRFFLECLKDR----YEIGYILSRSIDRARNLAEVY-GG-K-AATLEKHPELNGVVFVIVPDRYIKT 73 (276)
T ss_dssp --CCEEESC-CHHHHHHHHTTC--------CCCEECSSHHHHHHHHHHT-CC-C-CCSSCCCCC---CEEECSCTTTHHH
T ss_pred CceEEEEeC-CHHHHHHHHHHHHc----CcEEEEEeCCHHHHHHHHHHc-CC-c-cCCHHHHHhcCCEEEEeCChHHHHH
Confidence 378999998 99999999988763 355334444321 01111000 11 1 112333 468999999999988776
Q ss_pred hHHHHHhCCCeEEEcCCCCC
Q 017153 117 FGPIAVEKGSIVVDNSSAFR 136 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R 136 (376)
....+...|..|||.|+...
T Consensus 74 v~~~l~~~~~ivi~~s~~~~ 93 (276)
T 2i76_A 74 VANHLNLGDAVLVHCSGFLS 93 (276)
T ss_dssp HHTTTCCSSCCEEECCSSSC
T ss_pred HHHHhccCCCEEEECCCCCc
Confidence 66554445778999997654
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.002 Score=54.66 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=55.8
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
+.+|+|+|++ |..|..+++.|.+.+| ++.. .+++..|+.+. ...+.+ +..++ ..+|+|+.|+|....
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~---~v~~-vnp~~~g~~i~----G~~~~~-sl~el~~~~Dlvii~vp~~~v 83 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGY---HVIP-VSPKVAGKTLL----GQQGYA-TLADVPEKVDMVDVFRNSEAA 83 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTC---CEEE-ECSSSTTSEET----TEECCS-STTTCSSCCSEEECCSCSTHH
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCC---EEEE-eCCcccccccC----CeeccC-CHHHcCCCCCEEEEEeCHHHH
Confidence 3679999998 8899999999988754 4443 34444444431 233332 22333 578999999999988
Q ss_pred hhhHHHHHhCCCe
Q 017153 115 KKFGPIAVEKGSI 127 (376)
Q Consensus 115 ~~~~~~~~~~G~~ 127 (376)
.+.+..+.++|++
T Consensus 84 ~~v~~~~~~~g~~ 96 (145)
T 2duw_A 84 WGVAQEAIAIGAK 96 (145)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 8888888877765
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00081 Score=62.54 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=54.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|+ |.+|..+.+.|...++ ++..+ +++.. -+.+...+....+. .+.++..++|+||+|+|.....+..
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~---~V~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~D~vi~av~~~~~~~~~ 74 (279)
T 2f1k_A 1 MKIGVVGL-GLIGASLAGDLRRRGH---YLIGV-SRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLCTPIQLILPTL 74 (279)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEECSCHHHHHHHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHhCCCCcccc-CCHHHhCCCCEEEEECCHHHHHHHH
Confidence 58999997 9999999999987643 55544 33211 01111111110121 1222227899999999998777777
Q ss_pred HHHH---hCCCeEEEcCC
Q 017153 119 PIAV---EKGSIVVDNSS 133 (376)
Q Consensus 119 ~~~~---~~G~~VIDlS~ 133 (376)
..+. ..|..|||.++
T Consensus 75 ~~l~~~~~~~~~vv~~~~ 92 (279)
T 2f1k_A 75 EKLIPHLSPTAIVTDVAS 92 (279)
T ss_dssp HHHGGGSCTTCEEEECCS
T ss_pred HHHHhhCCCCCEEEECCC
Confidence 6654 35788999854
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0022 Score=60.62 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=51.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~ 111 (376)
+|||.|.||||++|+.|++.|.+++ .+++++.......+.+.. ..+.+...| ++ .+.++|+||.|.+.
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~l~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~ 87 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAG---HDLVLIHRPSSQIQRLAY--LEPECRVAEMLDHAGLERALRGLDGVIFSAGY 87 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEECTTSCGGGGGG--GCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEecChHhhhhhcc--CCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence 4699999999999999999998863 467666532221111111 122222222 11 24689999998764
Q ss_pred ch----------------hhhhHHHHHhCCC-eEEEcCCCC
Q 017153 112 SI----------------SKKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 112 ~~----------------s~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
.. +....+.+.+.|+ ++|=.|+..
T Consensus 88 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~ 128 (342)
T 2x4g_A 88 YPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAY 128 (342)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGG
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHH
Confidence 21 1223333444564 677777654
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00059 Score=65.90 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=59.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC------CCCeEEEEEecCCCCC-ceee----e--cCcceEEe-ecCccCC---CC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRSAG-KQLS----F--QDKAYTVE-ELTEDSF---DG 101 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~------~p~~~l~~v~s~~~~g-~~~~----~--~~~~~~v~-~~~~~~~---~~ 101 (376)
++||||+|. |.+|+.+++.|.++. .+.++++++++++..- +.+. . ......+. ..+.+++ .+
T Consensus 2 mirvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~ 80 (327)
T 3do5_A 2 MIKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSAD 80 (327)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSC
T ss_pred cEEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCC
Confidence 489999997 999999999997641 0578999998754211 0000 0 00000111 1122222 47
Q ss_pred CcEEEEcCCCchh----hhhHHHHHhCCCeEEE
Q 017153 102 VDIALFSAGGSIS----KKFGPIAVEKGSIVVD 130 (376)
Q Consensus 102 ~DvVf~a~~~~~s----~~~~~~~~~~G~~VID 130 (376)
+|+|+.|+|+... .++...++++|+.||-
T Consensus 81 iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~ 113 (327)
T 3do5_A 81 YDVLIEASVTRVDGGEGVNYIREALKRGKHVVT 113 (327)
T ss_dssp CSEEEECCCCC----CHHHHHHHHHTTTCEEEE
T ss_pred CCEEEECCCCcccchhHHHHHHHHHHCCCeEEe
Confidence 8999999998764 7888899999999984
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0019 Score=57.86 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
++||+|+|+ |.+|..+.+.|.+.++ ++..+ +++.. .+.++|+||+|++.....+..
T Consensus 19 ~~~I~iiG~-G~mG~~la~~l~~~g~---~V~~~-~~~~~-------------------~~~~aD~vi~av~~~~~~~v~ 74 (209)
T 2raf_A 19 GMEITIFGK-GNMGQAIGHNFEIAGH---EVTYY-GSKDQ-------------------ATTLGEIVIMAVPYPALAALA 74 (209)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CTTCC-------------------CSSCCSEEEECSCHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC---EEEEE-cCCHH-------------------HhccCCEEEEcCCcHHHHHHH
Confidence 579999997 9999999999987633 55433 32211 346789999999976666555
Q ss_pred HHH---HhCCCeEEEcCCCC
Q 017153 119 PIA---VEKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~~~---~~~G~~VIDlS~~~ 135 (376)
+.+ .+ |..|||+++.+
T Consensus 75 ~~l~~~~~-~~~vi~~~~g~ 93 (209)
T 2raf_A 75 KQYATQLK-GKIVVDITNPL 93 (209)
T ss_dssp HHTHHHHT-TSEEEECCCCB
T ss_pred HHHHHhcC-CCEEEEECCCC
Confidence 543 34 88999998865
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0012 Score=62.56 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=54.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
+||+|+|+.|.+|..+.+.|...++ ++.++ +++.. . . ..+.+.++|+||+|+|.....+...
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~---~V~~~-~~~~~--------~-----~-~~~~~~~aDvVilavp~~~~~~vl~ 83 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGY---PISIL-DREDW--------A-----V-AESILANADVVIVSVPINLTLETIE 83 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTC---CEEEE-CTTCG--------G-----G-HHHHHTTCSEEEECSCGGGHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC---eEEEE-ECCcc--------c-----C-HHHHhcCCCEEEEeCCHHHHHHHHH
Confidence 5899999559999999999987643 44433 33211 0 0 0123468999999999998888777
Q ss_pred HHH---hCCCeEEEcCCC
Q 017153 120 IAV---EKGSIVVDNSSA 134 (376)
Q Consensus 120 ~~~---~~G~~VIDlS~~ 134 (376)
.+. ..|+.|+|.++-
T Consensus 84 ~l~~~l~~~~iv~~~~sv 101 (298)
T 2pv7_A 84 RLKPYLTENMLLADLTSV 101 (298)
T ss_dssp HHGGGCCTTSEEEECCSC
T ss_pred HHHhhcCCCcEEEECCCC
Confidence 664 357889998764
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0021 Score=59.75 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=59.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
-|||+|+|. |.+|+.+++. + .++++.+.. +..|.. ...... |.++ +.+.|+|+.|.++..-.++
T Consensus 12 ~~rV~i~G~-GaIG~~v~~~---~---~leLv~v~~-~k~gel------gv~a~~-d~d~lla~pD~VVe~A~~~av~e~ 76 (253)
T 1j5p_A 12 HMTVLIIGM-GNIGKKLVEL---G---NFEKIYAYD-RISKDI------PGVVRL-DEFQVPSDVSTVVECASPEAVKEY 76 (253)
T ss_dssp CCEEEEECC-SHHHHHHHHH---S---CCSEEEEEC-SSCCCC------SSSEEC-SSCCCCTTCCEEEECSCHHHHHHH
T ss_pred cceEEEECc-CHHHHHHHhc---C---CcEEEEEEe-cccccc------CceeeC-CHHHHhhCCCEEEECCCHHHHHHH
Confidence 589999997 9999999997 2 678887765 333321 122221 2233 3588999999999988888
Q ss_pred HHHHHhCCCeEEEcCC
Q 017153 118 GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~ 133 (376)
..+++++|+-||-.|.
T Consensus 77 ~~~iL~aG~dvv~~S~ 92 (253)
T 1j5p_A 77 SLQILKNPVNYIIIST 92 (253)
T ss_dssp HHHHTTSSSEEEECCG
T ss_pred HHHHHHCCCCEEEcCh
Confidence 9999999999998775
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00057 Score=69.30 Aligned_cols=86 Identities=17% Similarity=0.045 Sum_probs=59.7
Q ss_pred CCCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcceEEeecCccC-C--CCCcEEEEc
Q 017153 38 SAPSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKAYTVEELTEDS-F--DGVDIALFS 108 (376)
Q Consensus 38 ~~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~~~v~~~~~~~-~--~~~DvVf~a 108 (376)
+++||||||+. |++|...++.|... .|.++++++++++.. .+.+.. +.....+.. +.++ + .++|+|+.|
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~-~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~-d~~ell~~~~vD~V~I~ 115 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQL-SSQFQIVALYNPTLKSSLQTIEQLQLKHATGFD-SLESFAQYKDIDMIVVS 115 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHT-TTTEEEEEEECSCHHHHHHHHHHTTCTTCEEES-CHHHHHHCTTCSEEEEC
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhc-CCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeC-CHHHHhcCCCCCEEEEc
Confidence 36899999984 99999999988763 168999998876421 111111 111112221 2222 2 479999999
Q ss_pred CCCchhhhhHHHHHhCC
Q 017153 109 AGGSISKKFGPIAVEKG 125 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G 125 (376)
+|+....+++.+++++|
T Consensus 116 tp~~~H~~~~~~al~aG 132 (479)
T 2nvw_A 116 VKVPEHYEVVKNILEHS 132 (479)
T ss_dssp SCHHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHCC
Confidence 99999999999999999
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00073 Score=62.11 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=57.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC---------------ceeeecCcceEEeecCccCCCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG---------------KQLSFQDKAYTVEELTEDSFDGVD 103 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g---------------~~~~~~~~~~~v~~~~~~~~~~~D 103 (376)
.+||+|+|+ |.+|..+.+.|..++| ++.+. +++..- ..+............ .+.+.++|
T Consensus 19 ~~kIgiIG~-G~mG~alA~~L~~~G~---~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~aD 92 (245)
T 3dtt_A 19 GMKIAVLGT-GTVGRTMAGALADLGH---EVTIG-TRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAF-ADVAAGAE 92 (245)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-ESCHHHHHTCC-------CCHHHHGGGSTTCEEEEH-HHHHHHCS
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCC---EEEEE-eCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCH-HHHHhcCC
Confidence 589999997 9999999999988744 55544 333210 000000011112111 12246799
Q ss_pred EEEEcCCCchhhhhHHHH-H--hCCCeEEEcCCCCC
Q 017153 104 IALFSAGGSISKKFGPIA-V--EKGSIVVDNSSAFR 136 (376)
Q Consensus 104 vVf~a~~~~~s~~~~~~~-~--~~G~~VIDlS~~~R 136 (376)
+||+|+|.....+.+..+ . -.|..|||+++.+.
T Consensus 93 vVilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~~~ 128 (245)
T 3dtt_A 93 LVVNATEGASSIAALTAAGAENLAGKILVDIANPLD 128 (245)
T ss_dssp EEEECSCGGGHHHHHHHHCHHHHTTSEEEECCCCEE
T ss_pred EEEEccCcHHHHHHHHHhhhhhcCCCEEEECCCCCC
Confidence 999999998776665443 1 26899999997764
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.001 Score=62.36 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=55.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------CceeeecCcce--EEeecCccC----CCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSFQDKAY--TVEELTEDS----FDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------g~~~~~~~~~~--~v~~~~~~~----~~~~Dv 104 (376)
+|||+|+|+ |.+|..+...|.+.+| ++..+. ++.. |..+....... .+...+..+ +.++|+
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~---~V~~~~-r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGN---DVTLID-QWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDL 77 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEC-SCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSE
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCC---cEEEEE-CCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCE
Confidence 479999998 9999999999987643 555443 3210 11110000000 000012212 238999
Q ss_pred EEEcCCCchhhhhHHHHHh---CCCeEEEcCCCC
Q 017153 105 ALFSAGGSISKKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
||+|++.....+..+.+.+ .+..|||+++.+
T Consensus 78 vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~ 111 (316)
T 2ew2_A 78 IIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGL 111 (316)
T ss_dssp EEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSS
T ss_pred EEEEeccccHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 9999998877776665543 478899998765
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0013 Score=64.85 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=58.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCC-----------ceeeecC----c---------ceEEe-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAG-----------KQLSFQD----K---------AYTVE- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g-----------~~~~~~~----~---------~~~v~- 92 (376)
++||+|+|+||.+|...++.+.++ |+ +++++++..+... +.+.... . ...+.
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~--p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~ 81 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERN--LDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAA 81 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT--GGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEE
T ss_pred ceEEEEECCCeEeHHHHHHHHHhC--cCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEe
Confidence 389999999999999999999987 87 9999874322221 1110000 0 01111
Q ss_pred ecC-c-c--CCCCCcEEEEcCCCchhhhhHHHHHhCCCeEEE
Q 017153 93 ELT-E-D--SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 93 ~~~-~-~--~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VID 130 (376)
..+ . + ... +|+|+.|++.....+..-.++++|..|+-
T Consensus 82 g~~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK~Vvl 122 (388)
T 1r0k_A 82 GADALVEAAMMG-ADWTMAAIIGCAGLKATLAAIRKGKTVAL 122 (388)
T ss_dssp SHHHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEE
Confidence 000 0 0 124 89999999776677777778899999984
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.002 Score=61.34 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++++|.|.||||++|+.|++.|.+++ .++.++.
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 56 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN---QVVIGLD 56 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 35899999999999999999998863 4666655
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00099 Score=65.11 Aligned_cols=90 Identities=22% Similarity=0.196 Sum_probs=58.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCceeeecCcceEE--------eec-----CccC-----
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTV--------EEL-----TEDS----- 98 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~~~~~~~~~~~v--------~~~-----~~~~----- 98 (376)
+++||||+|+ |.+|+.+++.|.++. .+.++++++++++. +.+......+.. .+. +.+.
T Consensus 3 k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~ 79 (358)
T 1ebf_A 3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL 79 (358)
T ss_dssp SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred ceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHh
Confidence 3589999998 999999999998862 12688988876432 111111000100 000 1110
Q ss_pred --CCCCcEEEEcCCCchhhhhHHHHHhCCCeEEE
Q 017153 99 --FDGVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 99 --~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VID 130 (376)
....|+|+.|+|+....+...+++++|+.||-
T Consensus 80 ~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVt 113 (358)
T 1ebf_A 80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISIAT 113 (358)
T ss_dssp TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEEC
T ss_pred hhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEe
Confidence 01238999999998766666788999999994
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00068 Score=63.60 Aligned_cols=87 Identities=13% Similarity=0.207 Sum_probs=53.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCc-hhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGS-ISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~-~s~~ 116 (376)
|||+|+|+ |.+|..+.+.|.+++| ++... +++.. -+.+... .+.... +.++ ..++|+||+|+|.. ...+
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~---~V~~~-dr~~~~~~~~~~~--g~~~~~-~~~~~~~~aDvvi~~vp~~~~~~~ 73 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGC---SVTIW-NRSPEKAEELAAL--GAERAA-TPCEVVESCPVTFAMLADPAAAEE 73 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSSGGGGHHHHHT--TCEECS-SHHHHHHHCSEEEECCSSHHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHHC--CCeecC-CHHHHHhcCCEEEEEcCCHHHHHH
Confidence 78999998 9999999999988743 55533 33321 1111111 222221 2222 36789999999964 3333
Q ss_pred hH---H---HHHhCCCeEEEcCCC
Q 017153 117 FG---P---IAVEKGSIVVDNSSA 134 (376)
Q Consensus 117 ~~---~---~~~~~G~~VIDlS~~ 134 (376)
.. . .....|..|||.|+.
T Consensus 74 v~~~~~~l~~~l~~~~~vi~~st~ 97 (287)
T 3pef_A 74 VCFGKHGVLEGIGEGRGYVDMSTV 97 (287)
T ss_dssp HHHSTTCHHHHCCTTCEEEECSCC
T ss_pred HHcCcchHhhcCCCCCEEEeCCCC
Confidence 33 2 234578899999875
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0048 Score=54.19 Aligned_cols=67 Identities=16% Similarity=0.204 Sum_probs=40.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCCceeeecCcceEEeecC---ccCCCC--CcEEEEcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLSFQDKAYTVEELT---EDSFDG--VDIALFSAGG 111 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~~~~--~DvVf~a~~~ 111 (376)
+.++|.|.||||++|+.+++.|.++ .. .++.++. ++.... . ..+.+...| ++.+.. +|+||.|.+.
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~--g~~~~V~~~~-r~~~~~---~--~~~~~~~~D~~~~~~~~~~~~d~vi~~a~~ 75 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSE--PTLAKVIAPA-RKALAE---H--PRLDNPVGPLAELLPQLDGSIDTAFCCLGT 75 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHC--TTCCEEECCB-SSCCCC---C--TTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred CCceEEEECCCcHHHHHHHHHHHhC--CCCCeEEEEe-CCCccc---C--CCceEEeccccCHHHHHHhhhcEEEECeee
Confidence 3579999999999999999999887 33 2665544 322210 0 112211112 122211 8999999875
Q ss_pred c
Q 017153 112 S 112 (376)
Q Consensus 112 ~ 112 (376)
.
T Consensus 76 ~ 76 (215)
T 2a35_A 76 T 76 (215)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0017 Score=60.48 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=42.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC--ceeeecCcceEEeecC---ccC----CCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSFQDKAYTVEELT---EDS----FDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~~~v~~~~---~~~----~~~~DvVf~a~ 109 (376)
+++|.|.||||++|+.+++.|.++ +..++.++....... +.+.. ..+.+...| ++. +.++|+||.|.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~~V~~~~R~~~~~~~~~l~~--~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 80 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLED--GTFKVRVVTRNPRKKAAKELRL--QGAEVVQGDQDDQVIMELALNGAYATFIVT 80 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH--CSSEEEEEESCTTSHHHHHHHH--TTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhc--CCceEEEEEcCCCCHHHHHHHH--CCCEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence 478999999999999999999876 335777665322111 01111 112222222 222 46899999998
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 81 ~~ 82 (299)
T 2wm3_A 81 NY 82 (299)
T ss_dssp CH
T ss_pred CC
Confidence 74
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0025 Score=53.71 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=60.3
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
+.+|+|+|+| |..|..+++.|.+++| ++..+. ++..++.+. .+.+.+ +.+++ ..+|+++.|+|....
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~---~v~~vn-p~~~~~~i~----G~~~~~-sl~el~~~vDlavi~vp~~~~ 83 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY---RVLPVN-PRFQGEELF----GEEAVA-SLLDLKEPVDILDVFRPPSAL 83 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC---EEEEEC-GGGTTSEET----TEECBS-SGGGCCSCCSEEEECSCHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCC---EEEEeC-CCcccCcCC----CEEecC-CHHHCCCCCCEEEEEeCHHHH
Confidence 3689999998 8999999999988754 544443 332233331 233332 12333 479999999999999
Q ss_pred hhhHHHHHhCCCeEEEcCCCC
Q 017153 115 KKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.+.+.++.+.|++.|=+.+.+
T Consensus 84 ~~v~~~~~~~gi~~i~~~~g~ 104 (140)
T 1iuk_A 84 MDHLPEVLALRPGLVWLQSGI 104 (140)
T ss_dssp TTTHHHHHHHCCSCEEECTTC
T ss_pred HHHHHHHHHcCCCEEEEcCCc
Confidence 999999988888744344443
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0054 Score=59.32 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCCCCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeeecCcceEEeecC--
Q 017153 20 NKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELT-- 95 (376)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~~~-- 95 (376)
-++|+..|-....+. ..++|+|.|.||||++|+.|++.|.+++ ..++.++. ++.... .+. ....+.+...|
T Consensus 14 ~~~~~~~m~~~~~~~-~~~~~~ilVtGatG~iG~~l~~~L~~~g--~~~V~~~~-r~~~~~~~~l~-~~~~v~~~~~Dl~ 88 (377)
T 2q1s_A 14 LVPRGSHMPVIMNAS-KLANTNVMVVGGAGFVGSNLVKRLLELG--VNQVHVVD-NLLSAEKINVP-DHPAVRFSETSIT 88 (377)
T ss_dssp ------------CCG-GGTTCEEEEETTTSHHHHHHHHHHHHTT--CSEEEEEC-CCTTCCGGGSC-CCTTEEEECSCTT
T ss_pred cccccccCCCCCChH-HhCCCEEEEECCccHHHHHHHHHHHHcC--CceEEEEE-CCCCCchhhcc-CCCceEEEECCCC
Confidence 466776665433211 1224799999999999999999998863 14676654 322211 111 01223333222
Q ss_pred -cc----CCCCCcEEEEcCCCc
Q 017153 96 -ED----SFDGVDIALFSAGGS 112 (376)
Q Consensus 96 -~~----~~~~~DvVf~a~~~~ 112 (376)
++ .+.++|+||.|.+..
T Consensus 89 d~~~l~~~~~~~d~Vih~A~~~ 110 (377)
T 2q1s_A 89 DDALLASLQDEYDYVFHLATYH 110 (377)
T ss_dssp CHHHHHHCCSCCSEEEECCCCS
T ss_pred CHHHHHHHhhCCCEEEECCCcc
Confidence 11 246899999987653
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00077 Score=61.97 Aligned_cols=71 Identities=10% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
..|||+|||+ |.+|..|.+.|.+.+| ++..+..+ +++.++| |+|+|.....+.
T Consensus 5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~---~V~~~~~~---------------------~~~~~aD--ilavP~~ai~~v 57 (232)
T 3dfu_A 5 PRLRVGIFDD-GSSTVNMAEKLDSVGH---YVTVLHAP---------------------EDIRDFE--LVVIDAHGVEGY 57 (232)
T ss_dssp CCCEEEEECC-SCCCSCHHHHHHHTTC---EEEECSSG---------------------GGGGGCS--EEEECSSCHHHH
T ss_pred CCcEEEEEee-CHHHHHHHHHHHHCCC---EEEEecCH---------------------HHhccCC--EEEEcHHHHHHH
Confidence 3589999998 9999999999988643 55543321 1245678 899999888888
Q ss_pred HHHHH---hCCCeEEEcCCCC
Q 017153 118 GPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~~ 135 (376)
+..+. ..|..|||.|+..
T Consensus 58 l~~l~~~l~~g~ivvd~sgs~ 78 (232)
T 3dfu_A 58 VEKLSAFARRGQMFLHTSLTH 78 (232)
T ss_dssp HHHHHTTCCTTCEEEECCSSC
T ss_pred HHHHHHhcCCCCEEEEECCcC
Confidence 77775 3588899998765
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0049 Score=52.10 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
..+|+|+|++ |..|..+++.|.+++| ++..+.. + ++.+ ..+.+.. +.+++ ..+|+|+.|+|....
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~---~v~~Vnp-~--~~~i----~G~~~y~-sl~~l~~~vDlvvi~vp~~~~ 90 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNP-K--YEEV----LGRKCYP-SVLDIPDKIEVVDLFVKPKLT 90 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECT-T--CSEE----TTEECBS-SGGGCSSCCSEEEECSCHHHH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCC---EEEEECC-C--CCeE----CCeeccC-CHHHcCCCCCEEEEEeCHHHH
Confidence 3789999998 8999999999988744 5554532 2 1222 1233332 22333 479999999999999
Q ss_pred hhhHHHHHhCCCeEEEcCC
Q 017153 115 KKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS~ 133 (376)
.+.+.++.++|++.|=+.+
T Consensus 91 ~~vv~~~~~~gi~~i~~~~ 109 (144)
T 2d59_A 91 MEYVEQAIKKGAKVVWFQY 109 (144)
T ss_dssp HHHHHHHHHHTCSEEEECT
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 9999999999987554443
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0051 Score=58.42 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeee--cCcceEEeecC--ccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF--QDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~--~~~~~~v~~~~--~~~~~~~DvVf~a~~~~ 112 (376)
+++|.|.||||++|+.|++.|.+++ .++.++.. ...+. .+.. ....+.+...| ...+.++|+||.|.+..
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~ 102 (343)
T 2b69_A 27 RKRILITGGAGFVGSHLTDKLMMDG---HEVTVVDN-FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPA 102 (343)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEEC-CSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCC
T ss_pred CCEEEEEcCccHHHHHHHHHHHHCC---CEEEEEeC-CCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECcccc
Confidence 4799999999999999999998863 46666542 22111 1110 11223333333 23457899999987643
Q ss_pred hh------------------hhhHHHHHhCCCeEEEcCCCC
Q 017153 113 IS------------------KKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~s------------------~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.. ...++.+.+.|+++|-.|+..
T Consensus 103 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 143 (343)
T 2b69_A 103 SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE 143 (343)
T ss_dssp SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHH
Confidence 21 122333345577888777653
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0017 Score=61.37 Aligned_cols=88 Identities=11% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~ 115 (376)
++||+|+|. |++|..+.+.|.+++| ++.+. +++. .-+.+... .+.... ++++ .. +|+||+|+|... ..
T Consensus 15 ~~~I~vIG~-G~mG~~~A~~l~~~G~---~V~~~-dr~~~~~~~~~~~--g~~~~~-~~~~~~~-aDvvi~~vp~~~~~~ 85 (296)
T 3qha_A 15 QLKLGYIGL-GNMGAPMATRMTEWPG---GVTVY-DIRIEAMTPLAEA--GATLAD-SVADVAA-ADLIHITVLDDAQVR 85 (296)
T ss_dssp CCCEEEECC-STTHHHHHHHHTTSTT---CEEEE-CSSTTTSHHHHHT--TCEECS-SHHHHTT-SSEEEECCSSHHHHH
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHHC--CCEEcC-CHHHHHh-CCEEEEECCChHHHH
Confidence 479999997 9999999999998754 45444 3322 11111111 222221 2333 45 999999999753 34
Q ss_pred hhHHHHH---hCCCeEEEcCCCC
Q 017153 116 KFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~ 135 (376)
+....+. ..|..|||.|...
T Consensus 86 ~v~~~l~~~l~~g~ivv~~st~~ 108 (296)
T 3qha_A 86 EVVGELAGHAKPGTVIAIHSTIS 108 (296)
T ss_dssp HHHHHHHTTCCTTCEEEECSCCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCC
Confidence 4444443 3688899998753
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00085 Score=64.40 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCc---------ceEEeecCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDK---------AYTVEELTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~---------~~~v~~~~~~~~~~~DvVf~a 108 (376)
.+||+|+|+ |.+|..+.+.|.+.+| ++.++ +++. .-+.+...+. .+.+.. ++.+..++|+||+|
T Consensus 14 ~~kI~iIG~-G~mG~ala~~L~~~G~---~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~aDvVil~ 87 (335)
T 1z82_A 14 EMRFFVLGA-GSWGTVFAQMLHENGE---EVILW-ARRKEIVDLINVSHTSPYVEESKITVRATN-DLEEIKKEDILVIA 87 (335)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSSHHHHHHHHHHSCBTTBTTCCCCSEEES-CGGGCCTTEEEEEC
T ss_pred CCcEEEECc-CHHHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHhCCcccCCCCeeeEEEeC-CHHHhcCCCEEEEE
Confidence 489999998 9999999999987643 55544 3321 1111111110 122222 23336789999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
++.....+.+..+...|..|||++...
T Consensus 88 vk~~~~~~v~~~l~~~~~~vv~~~nGi 114 (335)
T 1z82_A 88 IPVQYIREHLLRLPVKPSMVLNLSKGI 114 (335)
T ss_dssp SCGGGHHHHHTTCSSCCSEEEECCCCC
T ss_pred CCHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 998666555543322578899999654
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0006 Score=65.31 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=58.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCC---CceeeecCcceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSA---GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~---g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
+|||+|||+ |.+|..+.+.|.+.+. +..++. +.+++.. -+.+.. ..+.+.....+...++|+||+|++....
T Consensus 22 ~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~-v~~r~~~~~~~~~l~~--~G~~~~~~~~e~~~~aDvVilav~~~~~ 97 (322)
T 2izz_A 22 SMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIM-ASSPDMDLATVSALRK--MGVKLTPHNKETVQHSDVLFLAVKPHII 97 (322)
T ss_dssp CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCTTSHHHHHHHH--HTCEEESCHHHHHHHCSEEEECSCGGGH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCcceEE-EECCCccHHHHHHHHH--cCCEEeCChHHHhccCCEEEEEeCHHHH
Confidence 478999998 9999999999987641 113444 3344322 111111 1233322112234579999999998877
Q ss_pred hhhHHHHHh---CCCeEEEcCCCC
Q 017153 115 KKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
.+....+.. .|..|||+++..
T Consensus 98 ~~vl~~l~~~l~~~~ivvs~s~gi 121 (322)
T 2izz_A 98 PFILDEIGADIEDRHIVVSCAAGV 121 (322)
T ss_dssp HHHHHHHGGGCCTTCEEEECCTTC
T ss_pred HHHHHHHHhhcCCCCEEEEeCCCC
Confidence 777766543 478899998764
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0011 Score=66.73 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=55.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC------Cc-eeeec-----------CcceEEeecCcc-CC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA------GK-QLSFQ-----------DKAYTVEELTED-SF 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~------g~-~~~~~-----------~~~~~v~~~~~~-~~ 99 (376)
+|||+|+|+ |++|..+...|.+.+| ++..+...... |. .+... ...+.+. .+.+ .+
T Consensus 2 ~mkI~VIG~-G~vG~~lA~~La~~G~---~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea~ 76 (450)
T 3gg2_A 2 SLDIAVVGI-GYVGLVSATCFAELGA---NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQAV 76 (450)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHHG
T ss_pred CCEEEEECc-CHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHHH
Confidence 379999998 9999999999998644 66644321110 11 00000 0112222 2333 25
Q ss_pred CCCcEEEEcCCCc----------hhhhhHHHH---HhCCCeEEEcCCC
Q 017153 100 DGVDIALFSAGGS----------ISKKFGPIA---VEKGSIVVDNSSA 134 (376)
Q Consensus 100 ~~~DvVf~a~~~~----------~s~~~~~~~---~~~G~~VIDlS~~ 134 (376)
.++|+||.|+|+. .-.+..+.+ +..|..||+.|.-
T Consensus 77 ~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv 124 (450)
T 3gg2_A 77 PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTV 124 (450)
T ss_dssp GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeC
Confidence 7899999999887 333444333 3578889999864
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00037 Score=65.43 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=53.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-K 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~ 115 (376)
+|||+|+|+ |.+|..+.+.|..+++ ++. +.+++.. -+.+... .+.... +.+ .+.++|+||.|+|.... .
T Consensus 5 ~m~i~iiG~-G~~G~~~a~~l~~~g~---~V~-~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~~D~vi~~v~~~~~~~ 76 (299)
T 1vpd_A 5 TMKVGFIGL-GIMGKPMSKNLLKAGY---SLV-VSDRNPEAIADVIAA--GAETAS-TAKAIAEQCDVIITMLPNSPHVK 76 (299)
T ss_dssp -CEEEEECC-STTHHHHHHHHHHTTC---EEE-EECSCHHHHHHHHHT--TCEECS-SHHHHHHHCSEEEECCSSHHHHH
T ss_pred cceEEEECc-hHHHHHHHHHHHhCCC---EEE-EEeCCHHHHHHHHHC--CCeecC-CHHHHHhCCCEEEEECCCHHHHH
Confidence 379999997 9999999999987643 554 3333211 0111111 122211 222 24578999999996543 2
Q ss_pred hhH------HHHHhCCCeEEEcCCCC
Q 017153 116 KFG------PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~------~~~~~~G~~VIDlS~~~ 135 (376)
... ..+...|..|||+|+..
T Consensus 77 ~~~~~~~~l~~~l~~~~~vv~~s~~~ 102 (299)
T 1vpd_A 77 EVALGENGIIEGAKPGTVLIDMSSIA 102 (299)
T ss_dssp HHHHSTTCHHHHCCTTCEEEECSCCC
T ss_pred HHHhCcchHhhcCCCCCEEEECCCCC
Confidence 222 12345788999998764
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00028 Score=65.08 Aligned_cols=89 Identities=12% Similarity=0.242 Sum_probs=54.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~ 116 (376)
+|||+|+|+ |.+|+.+++.|...+ .++ .+.+++.. -+.+... ..+.+. .+.+ .+.++|+||.|+|.....+
T Consensus 3 ~m~i~iiG~-G~mG~~~a~~l~~~g---~~v-~~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~D~Vi~~v~~~~~~~ 75 (259)
T 2ahr_A 3 AMKIGIIGV-GKMASAIIKGLKQTP---HEL-IISGSSLERSKEIAEQ-LALPYA-MSHQDLIDQVDLVILGIKPQLFET 75 (259)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTSS---CEE-EEECSSHHHHHHHHHH-HTCCBC-SSHHHHHHTCSEEEECSCGGGHHH
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCC---CeE-EEECCCHHHHHHHHHH-cCCEee-CCHHHHHhcCCEEEEEeCcHhHHH
Confidence 479999997 999999999998763 344 34443311 0111100 011111 1222 2358999999999776655
Q ss_pred hHHHHHhCCCeEEEcCCCC
Q 017153 117 FGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~ 135 (376)
....+ ..|..+||.++..
T Consensus 76 v~~~l-~~~~~vv~~~~~~ 93 (259)
T 2ahr_A 76 VLKPL-HFKQPIISMAAGI 93 (259)
T ss_dssp HHTTS-CCCSCEEECCTTC
T ss_pred HHHHh-ccCCEEEEeCCCC
Confidence 55443 3688899987654
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00075 Score=64.40 Aligned_cols=84 Identities=12% Similarity=0.232 Sum_probs=57.8
Q ss_pred CEEEEECcccHHHHHH-HHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceE-EeecCccC-C--CCCcEEEEcCCCch
Q 017153 40 PSVAVVGVTGAVGQEF-LSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYT-VEELTEDS-F--DGVDIALFSAGGSI 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eL-lr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~-v~~~~~~~-~--~~~DvVf~a~~~~~ 113 (376)
+||||+|+ |.+|+.+ ++.|.+ +.++++++.+++.. .+.+.... ... +. .+.++ + .++|+|+.|+|+..
T Consensus 1 ~~vgiiG~-G~~g~~~~~~~l~~---~~~~~vav~d~~~~~~~~~~~~~-g~~~~~-~~~~~~l~~~~~D~V~i~tp~~~ 74 (332)
T 2glx_A 1 NRWGLIGA-STIAREWVIGAIRA---TGGEVVSMMSTSAERGAAYATEN-GIGKSV-TSVEELVGDPDVDAVYVSTTNEL 74 (332)
T ss_dssp CEEEEESC-CHHHHHTHHHHHHH---TTCEEEEEECSCHHHHHHHHHHT-TCSCCB-SCHHHHHTCTTCCEEEECSCGGG
T ss_pred CeEEEEcc-cHHHHHhhhHHhhc---CCCeEEEEECCCHHHHHHHHHHc-CCCccc-CCHHHHhcCCCCCEEEEeCChhH
Confidence 58999998 9999998 787776 56899888775421 11111100 011 11 12222 2 36999999999999
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
..+++..++++|..|+
T Consensus 75 h~~~~~~al~~Gk~v~ 90 (332)
T 2glx_A 75 HREQTLAAIRAGKHVL 90 (332)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHCCCeEE
Confidence 9999999999998776
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00033 Score=70.10 Aligned_cols=90 Identities=13% Similarity=0.014 Sum_probs=62.4
Q ss_pred CCCEEEEECc---ccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcceEEeecCccC-C--CCCcEEEEc
Q 017153 38 SAPSVAVVGV---TGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKAYTVEELTEDS-F--DGVDIALFS 108 (376)
Q Consensus 38 ~~irVaIvGa---TG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~~~v~~~~~~~-~--~~~DvVf~a 108 (376)
+++||||||+ .|++|...++.|..+ .|.++++++++++.. .+.+.. +.....+.. +.++ + .++|+|+.|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~-~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~-~~~~ll~~~~vD~V~i~ 96 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQL-SSQFQITALYSPKIETSIATIQRLKLSNATAFP-TLESFASSSTIDMIVIA 96 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHT-TTTEEEEEEECSSHHHHHHHHHHTTCTTCEEES-SHHHHHHCSSCSEEEEC
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhc-CCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeC-CHHHHhcCCCCCEEEEe
Confidence 4689999999 599999999988763 167999998876421 111111 111112221 2222 2 379999999
Q ss_pred CCCchhhhhHHHHHhCC------CeEE
Q 017153 109 AGGSISKKFGPIAVEKG------SIVV 129 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G------~~VI 129 (376)
+|+....+++.+++++| ..|+
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl 123 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLF 123 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEE
Confidence 99999999999999999 6665
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00027 Score=64.99 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=54.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCC-CceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~ 115 (376)
++||+|+|+ |.+|..+.+.|.+.++ +..++. +.+++.. -+.+... ..+.+.. +. +.+.++|+||+|++.....
T Consensus 2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~-~~~r~~~~~~~~~~~-~g~~~~~-~~~e~~~~aDvVilav~~~~~~ 77 (247)
T 3gt0_A 2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQII-CSDLNTANLKNASEK-YGLTTTT-DNNEVAKNADILILSIKPDLYA 77 (247)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCHHHHHHHHHH-HCCEECS-CHHHHHHHCSEEEECSCTTTHH
T ss_pred CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCHHHHHHHHHH-hCCEEeC-ChHHHHHhCCEEEEEeCHHHHH
Confidence 478999997 9999999999988754 222444 3343311 0111000 0122221 22 2246799999999888777
Q ss_pred hhHHHHH---hCCCeEEEcCCCC
Q 017153 116 KFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~ 135 (376)
+..+.+. ..|..||+.++..
T Consensus 78 ~v~~~l~~~l~~~~~vvs~~~gi 100 (247)
T 3gt0_A 78 SIINEIKEIIKNDAIIVTIAAGK 100 (247)
T ss_dssp HHC---CCSSCTTCEEEECSCCS
T ss_pred HHHHHHHhhcCCCCEEEEecCCC
Confidence 7766553 3467788776655
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.011 Score=48.98 Aligned_cols=89 Identities=10% Similarity=0.093 Sum_probs=62.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceeeecCcceEEeecC-ccCC---CCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQDKAYTVEELT-EDSF---DGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~~~~~~~~v~~~~-~~~~---~~~DvVf~a~~~~ 112 (376)
+.++.|+|+ |..|+.+++.|.++ +.++++.+.+.+. .|+.+ ..+++...+ ...+ .++|.||.|.|..
T Consensus 4 ~~~vlIiGa-G~~g~~l~~~l~~~--~g~~vvg~~d~~~~~~g~~i----~g~pV~g~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 4 KKKVLIYGA-GSAGLQLANMLRQG--KEFHPIAFIDDDRKKHKTTM----QGITIYRPKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHS--SSEEEEEEECSCGGGTTCEE----TTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCcEEEEEEECCcccCCCEe----cCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence 579999999 99999999999877 7899998876543 23222 134454421 1111 3689999999875
Q ss_pred hh---hhhHHHHHhCCCeEEEcCCC
Q 017153 113 IS---KKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s---~~~~~~~~~~G~~VIDlS~~ 134 (376)
.. .++...+.+.|+.|..+..-
T Consensus 77 ~~~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 77 SQVQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp CHHHHHHHHHHHHTTTCEEEECCCH
T ss_pred CHHHHHHHHHHHHHcCCeEEECCCH
Confidence 44 56667778899998866543
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00044 Score=64.74 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=52.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~ 116 (376)
+|||+|+|+ |.+|..+.+.|...+ .++.+.. +...-+.+... .+.+. .+.+ .+.++|+||+|+|.... ..
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g---~~V~~~~-~~~~~~~~~~~--g~~~~-~~~~~~~~~~D~vi~~vp~~~~~~~ 74 (295)
T 1yb4_A 3 AMKLGFIGL-GIMGSPMAINLARAG---HQLHVTT-IGPVADELLSL--GAVNV-ETARQVTEFADIIFIMVPDTPQVED 74 (295)
T ss_dssp -CEEEECCC-STTHHHHHHHHHHTT---CEEEECC-SSCCCHHHHTT--TCBCC-SSHHHHHHTCSEEEECCSSHHHHHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhCC---CEEEEEc-CHHHHHHHHHc--CCccc-CCHHHHHhcCCEEEEECCCHHHHHH
Confidence 479999997 999999999998763 3554333 22111111111 12111 1222 24689999999988763 33
Q ss_pred hHH---H---HHhCCCeEEEcCCC
Q 017153 117 FGP---I---AVEKGSIVVDNSSA 134 (376)
Q Consensus 117 ~~~---~---~~~~G~~VIDlS~~ 134 (376)
... . ....|..|||+++.
T Consensus 75 v~~~~~~l~~~l~~~~~vv~~s~~ 98 (295)
T 1yb4_A 75 VLFGEHGCAKTSLQGKTIVDMSSI 98 (295)
T ss_dssp HHHSTTSSTTSCCTTEEEEECSCC
T ss_pred HHhCchhHhhcCCCCCEEEECCCC
Confidence 332 1 23457889999876
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0061 Score=51.23 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=55.0
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
+.+|+|+|+| |..|..+++.|.+.+| ++..+. ++ ++.+ . ...+.+ +.+++ ..+|+|+.|+|....
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~---~V~~vn-p~--~~~i--~--G~~~~~-s~~el~~~vDlvii~vp~~~v 82 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGF---EVLPVN-PN--YDEI--E--GLKCYR-SVRELPKDVDVIVFVVPPKVG 82 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEEC-TT--CSEE--T--TEECBS-SGGGSCTTCCEEEECSCHHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCC---EEEEeC-CC--CCeE--C--CeeecC-CHHHhCCCCCEEEEEeCHHHH
Confidence 4789999997 8999999999988644 554443 32 1222 1 233332 23333 579999999999888
Q ss_pred hhhHHHHHhCCCe
Q 017153 115 KKFGPIAVEKGSI 127 (376)
Q Consensus 115 ~~~~~~~~~~G~~ 127 (376)
.+.+..+.++|++
T Consensus 83 ~~v~~~~~~~g~~ 95 (138)
T 1y81_A 83 LQVAKEAVEAGFK 95 (138)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 8888888888876
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0025 Score=60.84 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=53.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceee----ecCcceEEeecC---ccC----CC--CCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS----FQDKAYTVEELT---EDS----FD--GVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~----~~~~~~~v~~~~---~~~----~~--~~Dv 104 (376)
+++|.|.||||++|+.|++.|.+++ .++.++....... .... .....+.+...| .+. +. ++|+
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g---~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 86 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDI 86 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTT---CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC---CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCE
Confidence 4789999999999999999998874 3566554322111 0100 001123333222 222 35 8999
Q ss_pred EEEcCCCc---hhhhhHHHHHhCC-CeEEEcC
Q 017153 105 ALFSAGGS---ISKKFGPIAVEKG-SIVVDNS 132 (376)
Q Consensus 105 Vf~a~~~~---~s~~~~~~~~~~G-~~VIDlS 132 (376)
||.|.+.. ......+.+.+.| ++.+-.|
T Consensus 87 Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S 118 (346)
T 3i6i_A 87 VVSTVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346)
T ss_dssp EEECCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred EEECCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence 99998763 2344455556677 7655343
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0061 Score=59.03 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=42.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---ccC----CCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDS----FDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~----~~~~DvVf~a~~~ 111 (376)
+++|.|.||||++|+.|++.|.+++ .++.++........... ...+.+...| ++. +.++|+||.|.+.
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~--~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~ 103 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEG---HYVIASDWKKNEHMTED--MFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD 103 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEESSCCSSSCGG--GTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCC---CeEEEEECCCccchhhc--cCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence 4799999999999999999998863 46766653222111110 1122232222 111 3689999998764
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00079 Score=64.01 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCch-h
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSI-S 114 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~-s 114 (376)
+.+||+|||. |.+|..+.+.|.+.+| ++.+. +++.. -+.+.. ...... .++. .+.++|+||+|+|... .
T Consensus 8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~---~V~~~-dr~~~~~~~~~~--~g~~~~-~~~~e~~~~aDvVi~~vp~~~~~ 79 (306)
T 3l6d_A 8 FEFDVSVIGL-GAMGTIMAQVLLKQGK---RVAIW-NRSPGKAAALVA--AGAHLC-ESVKAALSASPATIFVLLDNHAT 79 (306)
T ss_dssp CSCSEEEECC-SHHHHHHHHHHHHTTC---CEEEE-CSSHHHHHHHHH--HTCEEC-SSHHHHHHHSSEEEECCSSHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHH--CCCeec-CCHHHHHhcCCEEEEEeCCHHHH
Confidence 4579999998 9999999999988754 44433 33211 011111 112221 1222 2467999999999765 3
Q ss_pred hhhHH----HHHhCCCeEEEcCCCC
Q 017153 115 KKFGP----IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~----~~~~~G~~VIDlS~~~ 135 (376)
.+... .....|..|||.|...
T Consensus 80 ~~v~~~~~l~~~~~g~ivid~st~~ 104 (306)
T 3l6d_A 80 HEVLGMPGVARALAHRTIVDYTTNA 104 (306)
T ss_dssp HHHHTSTTHHHHTTTCEEEECCCCC
T ss_pred HHHhcccchhhccCCCEEEECCCCC
Confidence 33221 1135788999998764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0078 Score=56.98 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=26.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.|+|.|.||||++|+.|++.|.+++ .+++++.
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g---~~V~~~~ 51 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQG---HEILVID 51 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGT---CEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 3799999999999999999998863 4676654
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0043 Score=58.85 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=27.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+|||.|.||||++|+.|++.|.+++ +..++..+.
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~g-~~~~v~~~~ 57 (346)
T 4egb_A 24 AMNILVTGGAGFIGSNFVHYMLQSY-ETYKIINFD 57 (346)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHC-TTEEEEEEE
T ss_pred CCeEEEECCccHHHHHHHHHHHhhC-CCcEEEEEe
Confidence 4899999999999999999888763 246776664
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00043 Score=67.58 Aligned_cols=94 Identities=9% Similarity=0.106 Sum_probs=56.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC--C--CeEEEEEecCCCC------Cceeeec--------C----cceEEeecCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF--P--YRSIKMLASKRSA------GKQLSFQ--------D----KAYTVEELTE 96 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~--p--~~~l~~v~s~~~~------g~~~~~~--------~----~~~~v~~~~~ 96 (376)
++||+|+|+ |.+|..+...|.+.+. | ..++..+. ++.. -+.+... + ..+... .++
T Consensus 21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~~~~-r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~ 97 (375)
T 1yj8_A 21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRMWI-RDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAH-SDL 97 (375)
T ss_dssp CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEEEEC-CSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEE-SST
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEEEEE-CChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEE-CCH
Confidence 468999998 9999999998876530 0 02454333 2211 0011000 0 012222 122
Q ss_pred c-CCCCCcEEEEcCCCchhhhhHHHHHh-------CCCeEEEcCCCC
Q 017153 97 D-SFDGVDIALFSAGGSISKKFGPIAVE-------KGSIVVDNSSAF 135 (376)
Q Consensus 97 ~-~~~~~DvVf~a~~~~~s~~~~~~~~~-------~G~~VIDlS~~~ 135 (376)
. ...++|+||+|+|.....+....+.. .|..|||++..+
T Consensus 98 ~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi 144 (375)
T 1yj8_A 98 ASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGF 144 (375)
T ss_dssp HHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSC
T ss_pred HHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcc
Confidence 2 24689999999998777777666543 477899998654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0042 Score=57.30 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=53.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC--CCCCcEEEEcCCCch---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS--FDGVDIALFSAGGSI--- 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~--~~~~DvVf~a~~~~~--- 113 (376)
+|||.|.|| |++|+.|++.|.+++ .++.++..+......+.. ..+.+...|..+ +.++|+||.|.+...
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~ 78 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQG---WRIIGTSRNPDQMEAIRA--SGAEPLLWPGEEPSLDGVTHLLISTAPDSGGD 78 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGT---CEEEEEESCGGGHHHHHH--TTEEEEESSSSCCCCTTCCEEEECCCCBTTBC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCC---CEEEEEEcChhhhhhHhh--CCCeEEEecccccccCCCCEEEECCCcccccc
Confidence 489999998 999999999998864 467666532211111110 122332222211 678999999986532
Q ss_pred --hhhhHHHHHh--CCC-eEEEcCCCC
Q 017153 114 --SKKFGPIAVE--KGS-IVVDNSSAF 135 (376)
Q Consensus 114 --s~~~~~~~~~--~G~-~VIDlS~~~ 135 (376)
...+...+.+ .|+ ++|-.|+..
T Consensus 79 ~~~~~l~~a~~~~~~~~~~~v~~Ss~~ 105 (286)
T 3ius_A 79 PVLAALGDQIAARAAQFRWVGYLSTTA 105 (286)
T ss_dssp HHHHHHHHHHHHTGGGCSEEEEEEEGG
T ss_pred HHHHHHHHHHHhhcCCceEEEEeecce
Confidence 2333444444 453 577677653
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.002 Score=60.23 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=26.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++++|.|.||||++|+.|++.|.++++ ++.++.
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~ 38 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGE---EVTVLD 38 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC---CEEEEC
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCC---EEEEEe
Confidence 458999999999999999999988743 565554
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.002 Score=61.84 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec-C-----c--c----e-EEeecCccC-CCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-D-----K--A----Y-TVEELTEDS-FDGVD 103 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~-~-----~--~----~-~v~~~~~~~-~~~~D 103 (376)
+|||+|+|+ |.+|..+...|...++ ++.++ +++.. -+.+... + . . + .+. .+.++ +.++|
T Consensus 4 ~mki~iiG~-G~~G~~~a~~L~~~g~---~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D 77 (359)
T 1bg6_A 4 SKTYAVLGL-GNGGHAFAAYLALKGQ---SVLAW-DIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT-SDIGLAVKDAD 77 (359)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHHTSEEEESSSCCEEECCSEEE-SCHHHHHTTCS
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCC---EEEEE-eCCHHHHHHHHhcCCeEEeccccccccccceec-CCHHHHHhcCC
Confidence 479999998 9999999999987643 55544 33211 0011000 0 0 0 0 011 12222 46899
Q ss_pred EEEEcCCCchhhhhHHHHH---hCCCeEEEcCC
Q 017153 104 IALFSAGGSISKKFGPIAV---EKGSIVVDNSS 133 (376)
Q Consensus 104 vVf~a~~~~~s~~~~~~~~---~~G~~VIDlS~ 133 (376)
+||.|++.....+....+. ..|..||++.+
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 9999999988877776653 45778888744
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0042 Score=60.57 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=59.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee----ecCcceEEee-cCc--------------cC--
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS----FQDKAYTVEE-LTE--------------DS-- 98 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~----~~~~~~~v~~-~~~--------------~~-- 98 (376)
+||+|+|+||-+|..-++.+.++ +.+++++++..++..+... ++-+-+.+.+ .+. .+
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~~--~~~~vvaL~a~~n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~el~ 81 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKV--KGIRLIGISFHSNLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEEML 81 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--CSEEEEEEEESSCHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHHHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhC--CCeEEEEEEccCCHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHHHh
Confidence 78999999999999999999987 8899998854333322111 1101111111 000 01
Q ss_pred -CCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 99 -FDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 99 -~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
..++|+|+.|.+.....+-.-.++++|..|.
T Consensus 82 ~~~~~D~Vv~AivG~aGL~ptlaAi~aGK~va 113 (376)
T 3a06_A 82 EALKPDITMVAVSGFSGLRAVLASLEHSKRVC 113 (376)
T ss_dssp HHHCCSEEEECCCSTTHHHHHHHHHHHCSEEE
T ss_pred cCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEE
Confidence 1368999999999888777777788998887
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0051 Score=58.33 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~ 116 (376)
+.|||+||- |+.|.-+.+.|.+++| ++.+. +++ ..-+.+.. ....+.+ ++. ...++|+||+|+|.....+
T Consensus 5 s~kIgfIGL-G~MG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~--~G~~~~~-s~~e~~~~~dvvi~~l~~~~~~~ 76 (297)
T 4gbj_A 5 SEKIAFLGL-GNLGTPIAEILLEAGY---ELVVW-NRTASKAEPLTK--LGATVVE-NAIDAITPGGIVFSVLADDAAVE 76 (297)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHTTC---EEEEC--------CTTTT--TTCEECS-SGGGGCCTTCEEEECCSSHHHHH
T ss_pred CCcEEEEec-HHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHH--cCCeEeC-CHHHHHhcCCceeeeccchhhHH
Confidence 468999998 9999999999988754 55543 222 11111111 1122222 233 3478999999999875532
Q ss_pred h-----HHHHHhCCCeEEEcCCCC
Q 017153 117 F-----GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~-----~~~~~~~G~~VIDlS~~~ 135 (376)
. .......|..+||+|...
T Consensus 77 ~v~~~~~~~~~~~~~iiid~sT~~ 100 (297)
T 4gbj_A 77 ELFSMELVEKLGKDGVHVSMSTIS 100 (297)
T ss_dssp HHSCHHHHHHHCTTCEEEECSCCC
T ss_pred HHHHHHHHhhcCCCeEEEECCCCC
Confidence 2 123346788999999864
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.01 Score=53.23 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=42.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCCCceeeecCcceEEeecC---ccC----CCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAGKQLSFQDKAYTVEELT---EDS----FDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~----~~~~DvVf~a~~ 110 (376)
.++|.|.||||++|+.+++.|.++ ..+ +++++..+........ ...+.+...| ++. +.++|+||.|.+
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~--G~~~~V~~~~r~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag 93 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGRRKLTFDEEA--YKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG 93 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEESSCCCCCSGG--GGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcC--CCCCEEEEEEcCCCCccccc--cCCceEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence 478999999999999999999886 322 6665543222111110 0122222222 222 368999999987
Q ss_pred Cc
Q 017153 111 GS 112 (376)
Q Consensus 111 ~~ 112 (376)
..
T Consensus 94 ~~ 95 (242)
T 2bka_A 94 TT 95 (242)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0096 Score=60.47 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=42.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
+|||.|.||||++|+.|++.|.+++ .++.++.........+... + .+...+.+.++|+||.|.+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G---~~V~~l~R~~~~~~~v~~d---~--~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG---HEVIQLVRKEPKPGKRFWD---P--LNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESSSCCTTCEECC---T--TSCCTTTTTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEECCCCCccceeec---c--cchhHHhcCCCCEEEECCCC
Confidence 5899999999999999999998864 3676665332211111110 0 11112345789999998764
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00079 Score=63.90 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=52.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCc-cCCCCCcEEEEcCCC-chhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGG-SISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~-~~s~ 115 (376)
++||+|+|+ |.+|..+.+.|...++ ++.+ .+++.. -+.+... ...+.. +. +.+.++|+||+|+|. ....
T Consensus 30 ~~~I~iIG~-G~mG~~~a~~l~~~g~---~V~~-~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~~DvVi~av~~~~~~~ 101 (316)
T 2uyy_A 30 DKKIGFLGL-GLMGSGIVSNLLKMGH---TVTV-WNRTAEKCDLFIQE--GARLGR-TPAEVVSTCDITFACVSDPKAAK 101 (316)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTC---CEEE-ECSSGGGGHHHHHT--TCEECS-CHHHHHHHCSEEEECCSSHHHHH
T ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC---EEEE-EeCCHHHHHHHHHc--CCEEcC-CHHHHHhcCCEEEEeCCCHHHHH
Confidence 479999998 9999999999987643 4443 333211 1111111 122221 22 224578999999994 4333
Q ss_pred hhHHH------HHhCCCeEEEcCCC
Q 017153 116 KFGPI------AVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~------~~~~G~~VIDlS~~ 134 (376)
+.... ....|..|||+|..
T Consensus 102 ~v~~~~~~~~~~l~~~~~vv~~s~~ 126 (316)
T 2uyy_A 102 DLVLGPSGVLQGIRPGKCYVDMSTV 126 (316)
T ss_dssp HHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred HHHcCchhHhhcCCCCCEEEECCCC
Confidence 33322 23467889998864
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0062 Score=57.80 Aligned_cols=88 Identities=22% Similarity=0.252 Sum_probs=51.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-cc----CCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED----SFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~----~~~~~DvVf~a~~~~~ 113 (376)
+++|.|.||||++|+.|++.|++++ .++.++.. +.....+ .....++. ++ .+.++|+||.|.+...
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~r-~~~~~~~-----~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~ 89 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQG---RTVRGFDL-RPSGTGG-----EEVVGSLEDGQALSDAIMGVSAVLHLGAFMS 89 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT---CCEEEEES-SCCSSCC-----SEEESCTTCHHHHHHHHTTCSEEEECCCCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCC---CEEEEEeC-CCCCCCc-----cEEecCcCCHHHHHHHHhCCCEEEECCcccC
Confidence 5789999999999999999998874 35665543 2221111 11111221 11 2368999998875421
Q ss_pred ----------------hhhhHHHHHhCCC-eEEEcCCCC
Q 017153 114 ----------------SKKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 114 ----------------s~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
+....+.+.+.|+ ++|=+|+..
T Consensus 90 ~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~ 128 (347)
T 4id9_A 90 WAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGE 128 (347)
T ss_dssp SSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGG
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHH
Confidence 1223444556676 577677643
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0037 Score=63.33 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC----------CCc-ee--eec-----------CcceEEee
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS----------AGK-QL--SFQ-----------DKAYTVEE 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~----------~g~-~~--~~~-----------~~~~~v~~ 93 (376)
.|||+|+|+ |++|.-+...|++. |.. ++..+.-... .|. ++ ... ...+.+..
T Consensus 18 ~mkIaVIGl-G~mG~~lA~~la~~--~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~tt 94 (478)
T 3g79_A 18 IKKIGVLGM-GYVGIPAAVLFADA--PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTP 94 (478)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHS--TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEES
T ss_pred CCEEEEECc-CHHHHHHHHHHHHh--CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeC
Confidence 589999998 99999999999987 344 7765542222 111 11 000 01233322
Q ss_pred cCccCCCCCcEEEEcCCCchh------------h---hhHHHHHhCCCeEEEcCCCC
Q 017153 94 LTEDSFDGVDIALFSAGGSIS------------K---KFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 94 ~~~~~~~~~DvVf~a~~~~~s------------~---~~~~~~~~~G~~VIDlS~~~ 135 (376)
+.+.+.++|+||.|+|+... . +....++..|..||+.|.-.
T Consensus 95 -d~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~ 150 (478)
T 3g79_A 95 -DFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTIT 150 (478)
T ss_dssp -CGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred -cHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCC
Confidence 34456789999999987631 1 11122345788999988654
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0019 Score=59.38 Aligned_cols=87 Identities=7% Similarity=0.122 Sum_probs=52.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
+|||+|+|+ |.+|..+.+.|.+.++ +..++.. .+++.. + . .+.+.. +. +...++|+||+|++.....+
T Consensus 4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~-~~~~~~-~---~---g~~~~~-~~~~~~~~~D~vi~~v~~~~~~~ 73 (262)
T 2rcy_A 4 NIKLGFMGL-GQMGSALAHGIANANIIKKENLFY-YGPSKK-N---T---TLNYMS-SNEELARHCDIIVCAVKPDIAGS 73 (262)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEE-ECSSCC-S---S---SSEECS-CHHHHHHHCSEEEECSCTTTHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEE-EeCCcc-c---C---ceEEeC-CHHHHHhcCCEEEEEeCHHHHHH
Confidence 479999998 9999999999877631 1134443 333321 1 1 122221 22 22457899999999887776
Q ss_pred hHHHHHh--CCCeEEEcCCCC
Q 017153 117 FGPIAVE--KGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~~~~--~G~~VIDlS~~~ 135 (376)
....+.+ .+..||..++..
T Consensus 74 v~~~l~~~l~~~~vv~~~~gi 94 (262)
T 2rcy_A 74 VLNNIKPYLSSKLLISICGGL 94 (262)
T ss_dssp HHHHSGGGCTTCEEEECCSSC
T ss_pred HHHHHHHhcCCCEEEEECCCC
Confidence 6665432 244566555544
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.002 Score=61.94 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=57.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC--C--CeEEEEEecCCC-----CCceeeec--------C----cceEEeecCcc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF--P--YRSIKMLASKRS-----AGKQLSFQ--------D----KAYTVEELTED 97 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~--p--~~~l~~v~s~~~-----~g~~~~~~--------~----~~~~v~~~~~~ 97 (376)
+|||+|+|+ |.+|..+...|.+.+. | ..++..+..+.. ..+.+... + ..+... .+.+
T Consensus 8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 85 (354)
T 1x0v_A 8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV-PDVV 85 (354)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE-SSHH
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE-cCHH
Confidence 479999998 9999999998876520 0 045554432222 11111100 0 012221 1222
Q ss_pred -CCCCCcEEEEcCCCchhhhhHHHHHh---CCCeEEEcCCCC
Q 017153 98 -SFDGVDIALFSAGGSISKKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 98 -~~~~~DvVf~a~~~~~s~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
...++|+||+|++.....+..+.+.. .+..|||++..+
T Consensus 86 ~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi 127 (354)
T 1x0v_A 86 QAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGV 127 (354)
T ss_dssp HHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCB
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCcc
Confidence 24689999999999777777666543 478899998755
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=60.15 Aligned_cols=90 Identities=11% Similarity=0.114 Sum_probs=53.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|+ |.+|..+.+.|...+ ..++. +.+++.. -+.+... ..+.+.....+.+ ++|+||+|+|.....+..
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g--~~~v~-~~~r~~~~~~~~~~~-~g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~ 74 (263)
T 1yqg_A 1 MNVYFLGG-GNMAAAVAGGLVKQG--GYRIY-IANRGAEKRERLEKE-LGVETSATLPELH-SDDVLILAVKPQDMEAAC 74 (263)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHC--SCEEE-EECSSHHHHHHHHHH-TCCEEESSCCCCC-TTSEEEECSCHHHHHHHH
T ss_pred CEEEEECc-hHHHHHHHHHHHHCC--CCeEE-EECCCHHHHHHHHHh-cCCEEeCCHHHHh-cCCEEEEEeCchhHHHHH
Confidence 58999998 999999999988753 13444 3343311 1111110 0233322112345 899999999965554444
Q ss_pred HHHHhCCCeEEEcCCCC
Q 017153 119 PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~ 135 (376)
..+.+.|..|||+++..
T Consensus 75 ~~l~~~~~ivv~~~~g~ 91 (263)
T 1yqg_A 75 KNIRTNGALVLSVAAGL 91 (263)
T ss_dssp TTCCCTTCEEEECCTTC
T ss_pred HHhccCCCEEEEecCCC
Confidence 33321278899996655
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0086 Score=54.66 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=58.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
-||..|+|++|..|+.+.+.... ++.++++..++.. . +++.++||+++-+-...+.+++
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~~~---~~~elv~~id~~~----------~--------~~l~~~DVvIDFT~P~a~~~~~ 70 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVFSE---KGHELVLKVDVNG----------V--------EELDSPDVVIDFSSPEALPKTV 70 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEEETTE----------E--------EECSCCSEEEECSCGGGHHHHH
T ss_pred cceeEEEEecCHHHHHHHHHHhC---CCCEEEEEEcCCC----------c--------ccccCCCEEEECCCHHHHHHHH
Confidence 48899999999999999887644 6789987654321 0 1224689999888888899999
Q ss_pred HHHHhCCCeEEEcCCCC
Q 017153 119 PIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~ 135 (376)
+.+.+.|+.+|..+.-|
T Consensus 71 ~~~~~~g~~~ViGTTG~ 87 (228)
T 1vm6_A 71 DLCKKYRAGLVLGTTAL 87 (228)
T ss_dssp HHHHHHTCEEEECCCSC
T ss_pred HHHHHcCCCEEEeCCCC
Confidence 99999999988766544
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=61.34 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=56.3
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCC----C-eEEEEEecCCCCCceeeecCcceEEee-------------cCccC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFP----Y-RSIKMLASKRSAGKQLSFQDKAYTVEE-------------LTEDS 98 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p----~-~~l~~v~s~~~~g~~~~~~~~~~~v~~-------------~~~~~ 98 (376)
.++|||+|+|+ |.+|..+...|.+. + . .++..+. +...-+.+... ..+.+.. .+.+.
T Consensus 6 ~~~m~I~iiG~-G~mG~~~a~~L~~~--~~~~~g~~~V~~~~-r~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (317)
T 2qyt_A 6 QQPIKIAVFGL-GGVGGYYGAMLALR--AAATDGLLEVSWIA-RGAHLEAIRAA-GGLRVVTPSRDFLARPTCVTDNPAE 80 (317)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHHH--HHHTTSSEEEEEEC-CHHHHHHHHHH-TSEEEECSSCEEEECCSEEESCHHH
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhC--ccccCCCCCEEEEE-cHHHHHHHHhc-CCeEEEeCCCCeEEecceEecCccc
Confidence 34589999998 99999999988764 1 2 4665443 32100011000 0111111 11223
Q ss_pred CCCCcEEEEcCCCchhhhhHHHHHh---CCCeEEEcCCCC
Q 017153 99 FDGVDIALFSAGGSISKKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
..++|+||+|++.....+..+.+.. .+..||+++..+
T Consensus 81 ~~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~ 120 (317)
T 2qyt_A 81 VGTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGA 120 (317)
T ss_dssp HCCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSS
T ss_pred cCCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCC
Confidence 4689999999999887777766543 366788877655
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0031 Score=63.79 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=58.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecC---ccC----CCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT---EDS----FDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~---~~~----~~~~DvVf~a~~ 110 (376)
.+||.|+|| |.+|+.+++.|.++ +..++.++ +++. ..+.+... ..+.....| .+. +.++|+|+.|+|
T Consensus 23 ~k~VlIiGA-GgiG~aia~~L~~~--~g~~V~v~-~R~~~ka~~la~~-~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp 97 (467)
T 2axq_A 23 GKNVLLLGS-GFVAQPVIDTLAAN--DDINVTVA-CRTLANAQALAKP-SGSKAISLDVTDDSALDKVLADNDVVISLIP 97 (467)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTS--TTEEEEEE-ESSHHHHHHHHGG-GTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred CCEEEEECC-hHHHHHHHHHHHhC--CCCeEEEE-ECCHHHHHHHHHh-cCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence 368999998 99999999999886 56776544 4331 11111111 112221222 111 358999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
...........+++|..++|.+.
T Consensus 98 ~~~~~~v~~a~l~~g~~vvd~~~ 120 (467)
T 2axq_A 98 YTFHPNVVKSAIRTKTDVVTSSY 120 (467)
T ss_dssp GGGHHHHHHHHHHHTCEEEECSC
T ss_pred hhhhHHHHHHHHhcCCEEEEeec
Confidence 88766666677788999999753
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0046 Score=56.96 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=53.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~~ 112 (376)
++|.|.||||++|+.+++.|.++ .+..++.++.........+.. ..+.+...| ++ .+.++|+||.+.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~-~~g~~V~~~~r~~~~~~~l~~--~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~ 77 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKK-VPASQIIAIVRNVEKASTLAD--QGVEVRHGDYNQPESLQKAFAGVSKLLFISGPH 77 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTT-SCGGGEEEEESCTTTTHHHHH--TTCEEEECCTTCHHHHHHHTTTCSEEEECCCCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHh-CCCCeEEEEEcCHHHHhHHhh--cCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCC
Confidence 46999999999999999999875 124567666532222111111 122222222 22 246899999987642
Q ss_pred h--------hhhhHHHHHhCCC-eEEEcCCC
Q 017153 113 I--------SKKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 113 ~--------s~~~~~~~~~~G~-~VIDlS~~ 134 (376)
. +....+.+.+.|+ ++|-.|+.
T Consensus 78 ~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~ 108 (287)
T 2jl1_A 78 YDNTLLIVQHANVVKAARDAGVKHIAYTGYA 108 (287)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred cCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 1 2233344556776 57766664
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0072 Score=58.31 Aligned_cols=93 Identities=20% Similarity=0.261 Sum_probs=54.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC--ceeeecCcceEEe--e-cC-ccC----CCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSFQDKAYTVE--E-LT-EDS----FDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~~~v~--~-~~-~~~----~~~~DvVf~a 108 (376)
+++|.|.||||++|+.|++.|.+++ .+++++..+.... +.+... ..+.+. + ++ ++. +.++|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~l~~~-~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVG---HHVRAQVHSLKGLIAEELQAI-PNVTLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTT---CCEEEEESCSCSHHHHHHHTS-TTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC---CEEEEEECCCChhhHHHHhhc-CCcEEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 4789999999999999999998763 3566554222211 111100 122222 2 22 221 4689999977
Q ss_pred CCCc------hhhhhHHHHHhCC-C-eEEEcCCCC
Q 017153 109 AGGS------ISKKFGPIAVEKG-S-IVVDNSSAF 135 (376)
Q Consensus 109 ~~~~------~s~~~~~~~~~~G-~-~VIDlS~~~ 135 (376)
.+.. .....++.+.+.| + ++|-.|+..
T Consensus 81 a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 81 TTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp CCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence 6543 2233444555667 5 677677653
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0034 Score=58.52 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=52.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc----e---ee-ecCcceEEeecC---ccC----CCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----Q---LS-FQDKAYTVEELT---EDS----FDGVD 103 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~----~---~~-~~~~~~~v~~~~---~~~----~~~~D 103 (376)
+++|.|.||||++|+.+++.|.++++ ++.++. ++.... . +. .....+.+...| ++. +.++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~l~-R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d 79 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGH---PTFLLV-RESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVD 79 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTC---CEEEEC-CCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCC---CEEEEE-CCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCC
Confidence 36899999999999999999988743 455443 322110 0 00 001123333222 222 35899
Q ss_pred EEEEcCCCc---hhhhhHHHHHhCC-CeEEEcC
Q 017153 104 IALFSAGGS---ISKKFGPIAVEKG-SIVVDNS 132 (376)
Q Consensus 104 vVf~a~~~~---~s~~~~~~~~~~G-~~VIDlS 132 (376)
+||.|.+.. .....++.+.++| ++.|-.|
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S 112 (308)
T 1qyc_A 80 VVISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 112 (308)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHCCCSEEECS
T ss_pred EEEECCcchhhhhHHHHHHHHHhcCCCceEeec
Confidence 999998753 3445556666677 6533243
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.003 Score=63.25 Aligned_cols=99 Identities=9% Similarity=0.147 Sum_probs=54.2
Q ss_pred eccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCc-eeee-c--------CcceEEeec
Q 017153 31 VRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGK-QLSF-Q--------DKAYTVEEL 94 (376)
Q Consensus 31 ~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~-~~~~-~--------~~~~~v~~~ 94 (376)
-.|.+..++|||+|+|+ ||+|..+...|.+ +| ++.++.-... .|. ++.. + ...+.+. .
T Consensus 28 ~~~~r~~~~mkIaVIGl-G~mG~~lA~~La~-G~---~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~t-t 101 (432)
T 3pid_A 28 QQMGRGSEFMKITISGT-GYVGLSNGVLIAQ-NH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRAT-T 101 (432)
T ss_dssp -------CCCEEEEECC-SHHHHHHHHHHHT-TS---EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE-S
T ss_pred cccccccCCCEEEEECc-CHHHHHHHHHHHc-CC---eEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEE-c
Confidence 35556666789999998 9999999998886 44 5654431111 111 0000 0 0012222 2
Q ss_pred Cc-cCCCCCcEEEEcCCCchh-----------hhhHHHH--HhCCCeEEEcCCCC
Q 017153 95 TE-DSFDGVDIALFSAGGSIS-----------KKFGPIA--VEKGSIVVDNSSAF 135 (376)
Q Consensus 95 ~~-~~~~~~DvVf~a~~~~~s-----------~~~~~~~--~~~G~~VIDlS~~~ 135 (376)
++ +.+.++|+||.|+|.... .+....+ +..|..|||.|.-.
T Consensus 102 d~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~STv~ 156 (432)
T 3pid_A 102 DKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKSTIP 156 (432)
T ss_dssp CHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSCCC
T ss_pred CHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence 32 345789999999998631 1111111 46789999988653
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0018 Score=63.26 Aligned_cols=89 Identities=9% Similarity=0.182 Sum_probs=55.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCC---cEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGV---DIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~---DvVf~a~~~~~ 113 (376)
+|||+|||. |.+|..+.+.|.+++ .++.+. +++.. -+.+.. ..+... .++++ ..++ |+||+|+|...
T Consensus 22 ~mkIgiIGl-G~mG~~~A~~L~~~G---~~V~v~-dr~~~~~~~l~~--~g~~~~-~s~~e~~~~a~~~DvVi~~vp~~~ 93 (358)
T 4e21_A 22 SMQIGMIGL-GRMGADMVRRLRKGG---HECVVY-DLNVNAVQALER--EGIAGA-RSIEEFCAKLVKPRVVWLMVPAAV 93 (358)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEE-CSCHHHHHHHHT--TTCBCC-SSHHHHHHHSCSSCEEEECSCGGG
T ss_pred CCEEEEECc-hHHHHHHHHHHHhCC---CEEEEE-eCCHHHHHHHHH--CCCEEe-CCHHHHHhcCCCCCEEEEeCCHHH
Confidence 489999997 999999999999874 355543 33211 011111 111111 12222 2345 99999999986
Q ss_pred hhhhHHHHH---hCCCeEEEcCCCC
Q 017153 114 SKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 114 s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
..+....+. +.|..|||.|+..
T Consensus 94 v~~vl~~l~~~l~~g~iiId~st~~ 118 (358)
T 4e21_A 94 VDSMLQRMTPLLAANDIVIDGGNSH 118 (358)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 555555543 4688999999875
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0096 Score=50.29 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=46.9
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEe-ec-Ccc-----CCCCCcE
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVE-EL-TED-----SFDGVDI 104 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~-~~-~~~-----~~~~~Dv 104 (376)
||.....++|.|+|+ |.+|+.+++.|...+ .++.++......-+.+. ..+.. .+. +. +++ .+.++|+
T Consensus 13 ~~~~~~~~~v~IiG~-G~iG~~la~~L~~~g---~~V~vid~~~~~~~~~~~~~g~~-~~~~d~~~~~~l~~~~~~~ad~ 87 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGC-GRLGSLIANLASSSG---HSVVVVDKNEYAFHRLNSEFSGF-TVVGDAAEFETLKECGMEKADM 87 (155)
T ss_dssp ----CCCCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCGGGGGGSCTTCCSE-EEESCTTSHHHHHTTTGGGCSE
T ss_pred hhcccCCCcEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHhcCCCc-EEEecCCCHHHHHHcCcccCCE
Confidence 444444689999998 999999999998863 36665543211111111 11111 111 11 111 1457999
Q ss_pred EEEcCCCchhhhhHHHH
Q 017153 105 ALFSAGGSISKKFGPIA 121 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~ 121 (376)
||.|++.......+..+
T Consensus 88 Vi~~~~~~~~~~~~~~~ 104 (155)
T 2g1u_A 88 VFAFTNDDSTNFFISMN 104 (155)
T ss_dssp EEECSSCHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHH
Confidence 99999986654444433
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0033 Score=58.71 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=51.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC---c--eee-ecCcceEEeecC---ccC----CCCCcEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG---K--QLS-FQDKAYTVEELT---EDS----FDGVDIA 105 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g---~--~~~-~~~~~~~v~~~~---~~~----~~~~DvV 105 (376)
+++|.|.||||++|+.+++.|.+++ .++.++....+.. + .+. .....+.+...| ++. +.++|+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~v 80 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVV 80 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT---CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC---CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEE
Confidence 4789999999999999999998874 3565554322110 0 000 001123333222 222 4689999
Q ss_pred EEcCCCc-------hhhhhHHHHHhCC-CeEE
Q 017153 106 LFSAGGS-------ISKKFGPIAVEKG-SIVV 129 (376)
Q Consensus 106 f~a~~~~-------~s~~~~~~~~~~G-~~VI 129 (376)
|.|.+.. .....++.+.++| ++.|
T Consensus 81 i~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~ 112 (313)
T 1qyd_A 81 ISALAGGVLSHHILEQLKLVEAIKEAGNIKRF 112 (313)
T ss_dssp EECCCCSSSSTTTTTHHHHHHHHHHSCCCSEE
T ss_pred EECCccccchhhHHHHHHHHHHHHhcCCCceE
Confidence 9998753 2344555666778 6533
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0008 Score=56.38 Aligned_cols=90 Identities=11% Similarity=0.131 Sum_probs=54.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeec-Cc-cCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEEL-TE-DSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~s~ 115 (376)
..||+|+|+ |.+|+.+++.|... ..+ +.+.+++.. .+.+.... ...+... +. +.+.++|+||.|+|.....
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~---g~~-v~v~~r~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~Divi~at~~~~~~ 94 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYP---QYK-VTVAGRNIDHVRAFAEKY-EYEYVLINDIDSLIKNNDVIITATSSKTPI 94 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTT---TCE-EEEEESCHHHHHHHHHHH-TCEEEECSCHHHHHHTCSEEEECSCCSSCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---CCE-EEEEcCCHHHHHHHHHHh-CCceEeecCHHHHhcCCCEEEEeCCCCCcE
Confidence 479999997 99999999988775 356 445544321 11111100 1122221 11 2246899999999986432
Q ss_pred hhHHHHHhCCCeEEEcCCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~~ 135 (376)
- ....++.|..++|++-+.
T Consensus 95 ~-~~~~l~~g~~vid~~~p~ 113 (144)
T 3oj0_A 95 V-EERSLMPGKLFIDLGNPP 113 (144)
T ss_dssp B-CGGGCCTTCEEEECCSSC
T ss_pred e-eHHHcCCCCEEEEccCCc
Confidence 1 123446799999998653
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.018 Score=54.31 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=53.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---ccC-----CCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDS-----FDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~-----~~~~DvVf~a~~~ 111 (376)
|||.|.||||++|+.|++.|.++ +..++.++.........+. ....+.+...| ... +.++|+||.|.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~--~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~ 77 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRFL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI 77 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS--TTCEEEEEESCCGGGGGGT-TCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHh--CCCEEEEEeCCcchHHHhh-cCCCeEEEeccccCcHHHHHhhccCCCEEEEcccc
Confidence 58999999999999999999876 3457776653221111110 01123332222 111 2478999998653
Q ss_pred ch------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.. .....+.+.+.|.++|-.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~ 119 (345)
T 2bll_A 78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSE 119 (345)
T ss_dssp CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred cCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHH
Confidence 21 1122334445677788788754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0039 Score=58.61 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=52.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC----c--eee-ecCcceEEeecC---ccC----CCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG----K--QLS-FQDKAYTVEELT---EDS----FDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g----~--~~~-~~~~~~~v~~~~---~~~----~~~~Dv 104 (376)
+++|.|.||||++|+.+++.|.+++ .++.++......+ + .+. .....+.+...| ++. +.++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~ 80 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFS---HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDI 80 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTT---CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCC---CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCE
Confidence 4789999999999999999998874 3565554322011 0 000 001123332222 222 468999
Q ss_pred EEEcCCCc---hhhhhHHHHHhCC-Ce-EE
Q 017153 105 ALFSAGGS---ISKKFGPIAVEKG-SI-VV 129 (376)
Q Consensus 105 Vf~a~~~~---~s~~~~~~~~~~G-~~-VI 129 (376)
||.|.+.. .....++.+.++| ++ +|
T Consensus 81 vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 81 VISALPFPMISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp EEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred EEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence 99998753 3455556666677 65 54
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0017 Score=62.72 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecCc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
.+||+|+|+ |.+|..+.+.|...++ ++. +.+++. .+.... ....+.+. +. +.+.++|+||+|+|.....+
T Consensus 16 ~~~I~IIG~-G~mG~alA~~L~~~G~---~V~-~~~~~~-~~~~~~a~~~G~~~~--~~~e~~~~aDvVilavp~~~~~~ 87 (338)
T 1np3_A 16 GKKVAIIGY-GSQGHAHACNLKDSGV---DVT-VGLRSG-SATVAKAEAHGLKVA--DVKTAVAAADVVMILTPDEFQGR 87 (338)
T ss_dssp TSCEEEECC-SHHHHHHHHHHHHTTC---CEE-EECCTT-CHHHHHHHHTTCEEE--CHHHHHHTCSEEEECSCHHHHHH
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCcC---EEE-EEECCh-HHHHHHHHHCCCEEc--cHHHHHhcCCEEEEeCCcHHHHH
Confidence 378999998 9999999999987643 444 333322 111110 00112222 32 23468999999999988877
Q ss_pred hHH-HHH---hCCCeEEEcCC
Q 017153 117 FGP-IAV---EKGSIVVDNSS 133 (376)
Q Consensus 117 ~~~-~~~---~~G~~VIDlS~ 133 (376)
... .+. +.|+.|+|.++
T Consensus 88 v~~~~i~~~l~~~~ivi~~~g 108 (338)
T 1np3_A 88 LYKEEIEPNLKKGATLAFAHG 108 (338)
T ss_dssp HHHHHTGGGCCTTCEEEESCC
T ss_pred HHHHHHHhhCCCCCEEEEcCC
Confidence 766 443 46888998764
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.013 Score=54.68 Aligned_cols=65 Identities=18% Similarity=0.318 Sum_probs=38.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC--ccC----CCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT--EDS----FDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~--~~~----~~~~DvVf~a~~ 110 (376)
++|.|.||||++|+.|++.|.++ . .++.+..++...... ....+.+...| .+. +.++|+||.+.+
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~--g--~~v~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~ 72 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSES--N--EIVVIDNLSSGNEEF--VNEAARLVKADLAADDIKDYLKGAEEVWHIAA 72 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTT--S--CEEEECCCSSCCGGG--SCTTEEEECCCTTTSCCHHHHTTCSEEEECCC
T ss_pred CEEEEECCCchHHHHHHHHHHhC--C--CEEEEEcCCCCChhh--cCCCcEEEECcCChHHHHHHhcCCCEEEECCC
Confidence 58999999999999999999986 3 444444332211110 01122222222 222 358999998875
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0023 Score=59.54 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=53.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCch-hhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~-s~~~ 117 (376)
+||+|+|+ |.+|..+.+.|.. ++ ++. +.+++.. -+.+... ...... ..+.+.++|+||.|+|... ....
T Consensus 2 ~~i~iiG~-G~~G~~~a~~l~~-g~---~V~-~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v 72 (289)
T 2cvz_A 2 EKVAFIGL-GAMGYPMAGHLAR-RF---PTL-VWNRTFEKALRHQEE--FGSEAV-PLERVAEARVIFTCLPTTREVYEV 72 (289)
T ss_dssp CCEEEECC-STTHHHHHHHHHT-TS---CEE-EECSSTHHHHHHHHH--HCCEEC-CGGGGGGCSEEEECCSSHHHHHHH
T ss_pred CeEEEEcc-cHHHHHHHHHHhC-CC---eEE-EEeCCHHHHHHHHHC--CCcccC-HHHHHhCCCEEEEeCCChHHHHHH
Confidence 68999998 9999999999987 65 343 3333211 0111111 122222 2233568999999999875 4444
Q ss_pred HHHHH---hCCCeEEEcCCC
Q 017153 118 GPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~ 134 (376)
...+. ..|..|||+|..
T Consensus 73 ~~~l~~~l~~~~~vv~~s~~ 92 (289)
T 2cvz_A 73 AEALYPYLREGTYWVDATSG 92 (289)
T ss_dssp HHHHTTTCCTTEEEEECSCC
T ss_pred HHHHHhhCCCCCEEEECCCC
Confidence 44432 357889998764
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.013 Score=55.57 Aligned_cols=95 Identities=16% Similarity=0.129 Sum_probs=54.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeee-cCcceEEeecC---ccC----CCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF-QDKAYTVEELT---EDS----FDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~-~~~~~~v~~~~---~~~----~~~~DvVf~a 108 (376)
+++|.|.||||++|+.|++.|.+++ +..++.++......+. .+.. ....+.+...| ++. +.++|+||.|
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNH-PDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY 82 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHC-TTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhC-CCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEEC
Confidence 3799999999999999999888751 2457776643221111 1110 01123333223 111 3678999999
Q ss_pred CCCch------------------hhhhHHHHHhCCCeEEEcCCC
Q 017153 109 AGGSI------------------SKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 109 ~~~~~------------------s~~~~~~~~~~G~~VIDlS~~ 134 (376)
.+... +....+.+.+.|+++|-.|+.
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~ 126 (348)
T 1oc2_A 83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTD 126 (348)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 76532 112223334456788877764
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0012 Score=61.93 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=53.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-K 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~ 115 (376)
++||+|+|+ |.+|..+.+.|...++ ++. +.+++.. -+.+.. ..+.+.. +.+ .+.++|+||.|+|.... .
T Consensus 4 ~~~i~iiG~-G~~G~~~a~~l~~~g~---~V~-~~~~~~~~~~~~~~--~g~~~~~-~~~~~~~~~D~vi~~vp~~~~~~ 75 (301)
T 3cky_A 4 SIKIGFIGL-GAMGKPMAINLLKEGV---TVY-AFDLMEANVAAVVA--QGAQACE-NNQKVAAASDIIFTSLPNAGIVE 75 (301)
T ss_dssp CCEEEEECC-CTTHHHHHHHHHHTTC---EEE-EECSSHHHHHHHHT--TTCEECS-SHHHHHHHCSEEEECCSSHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC---eEE-EEeCCHHHHHHHHH--CCCeecC-CHHHHHhCCCEEEEECCCHHHHH
Confidence 479999997 9999999999987643 554 3333211 011111 1222221 222 24578999999987553 2
Q ss_pred hhHH------HHHhCCCeEEEcCCCC
Q 017153 116 KFGP------IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~------~~~~~G~~VIDlS~~~ 135 (376)
.... ..+..|..|||+++..
T Consensus 76 ~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 76 TVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp HHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCC
Confidence 2221 2345688999998764
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.01 Score=48.87 Aligned_cols=86 Identities=10% Similarity=0.015 Sum_probs=61.4
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
+.+|||+||| +..|..+++.|.+++| ++..+..+. ..+ .....+. +..++.++|+|+.++|.....
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~---~V~pVnP~~---~~i----~G~~~y~-sl~dlp~vDlavi~~p~~~v~ 72 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGH---EFIPVGRKK---GEV----LGKTIIN-ERPVIEGVDTVTLYINPQNQL 72 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTC---CEEEESSSC---SEE----TTEECBC-SCCCCTTCCEEEECSCHHHHG
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCC---eEEEECCCC---CcC----CCeeccC-ChHHCCCCCEEEEEeCHHHHH
Confidence 4689999997 6689999999988754 666665321 122 1122322 223342399999999999999
Q ss_pred hhHHHHHhCCCeEEEcCCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~~ 135 (376)
+.++++.+.|++.|=+++-|
T Consensus 73 ~~v~e~~~~g~k~v~~~~G~ 92 (122)
T 3ff4_A 73 SEYNYILSLKPKRVIFNPGT 92 (122)
T ss_dssp GGHHHHHHHCCSEEEECTTC
T ss_pred HHHHHHHhcCCCEEEECCCC
Confidence 99999999998877677766
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0028 Score=60.24 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=55.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec--CCCCCceeeecC---------cceEEeec-Cc-cCCCCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSFQD---------KAYTVEEL-TE-DSFDGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s--~~~~g~~~~~~~---------~~~~v~~~-~~-~~~~~~DvVf 106 (376)
|||+|+|+ |.+|..+...|.+.+| ++..+.. +...-+.+...+ ..+.+... ++ +...++|+||
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi 76 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGN---EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL 76 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC---EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC---eEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEE
Confidence 58999998 9999999999987643 5554432 111001111111 01122211 22 2246899999
Q ss_pred EcCCCchhhhhHHHHH--hCCCeEEEcCCCC
Q 017153 107 FSAGGSISKKFGPIAV--EKGSIVVDNSSAF 135 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~--~~G~~VIDlS~~~ 135 (376)
.|++.....+....+. ..|..|||++...
T Consensus 77 ~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 77 LGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp ECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred EcCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 9999987766665553 3577899988543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0065 Score=55.82 Aligned_cols=91 Identities=20% Similarity=0.305 Sum_probs=51.8
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCCc-
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGGS- 112 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~~- 112 (376)
||.|.||||++|+.+++.|.++ ++..+++++.........+.. ..+.+...| ++ .+.++|+||.+.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~-~~g~~V~~~~r~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~ 77 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKT-VPASQIVAIVRNPAKAQALAA--QGITVRQADYGDEAALTSALQGVEKLLLISSSEV 77 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTT-SCGGGEEEEESCTTTCHHHHH--TTCEEEECCTTCHHHHHHHTTTCSEEEECC----
T ss_pred CEEEEcCCchHHHHHHHHHHhh-CCCceEEEEEcChHhhhhhhc--CCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCc
Confidence 5899999999999999999875 124567666532222111111 112222222 22 246899999987642
Q ss_pred -----hhhhhHHHHHhCCC-eEEEcCCC
Q 017153 113 -----ISKKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 113 -----~s~~~~~~~~~~G~-~VIDlS~~ 134 (376)
.+....+.+.+.|+ ++|-.|+.
T Consensus 78 ~~~~~~~~~l~~a~~~~~~~~~v~~Ss~ 105 (286)
T 2zcu_A 78 GQRAPQHRNVINAAKAAGVKFIAYTSLL 105 (286)
T ss_dssp ----CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 23444555556675 46656654
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0073 Score=56.17 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc----e---ee-ecCcceEEeecC---ccC----CCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----Q---LS-FQDKAYTVEELT---EDS----FDGVD 103 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~----~---~~-~~~~~~~v~~~~---~~~----~~~~D 103 (376)
+++|.|.||||++|+.+++.|.++++ ++.++..+.+.+. . +. .....+.+...| ++. +.++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGN---PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVD 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTC---CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCC---cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCC
Confidence 36899999999999999999987643 4555543220110 0 00 000123332222 222 36899
Q ss_pred EEEEcCCCc---hhhhhHHHHHhCC-Ce-EE
Q 017153 104 IALFSAGGS---ISKKFGPIAVEKG-SI-VV 129 (376)
Q Consensus 104 vVf~a~~~~---~s~~~~~~~~~~G-~~-VI 129 (376)
+||.|.+.. .....++.+.++| ++ +|
T Consensus 79 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 109 (307)
T 2gas_A 79 IVICAAGRLLIEDQVKIIKAIKEAGNVKKFF 109 (307)
T ss_dssp EEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred EEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence 999998753 3344555566677 65 44
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=62.14 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=54.8
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec--------C----cceEEeecCcc-CCCCCcEEE
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ--------D----KAYTVEELTED-SFDGVDIAL 106 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~--------~----~~~~v~~~~~~-~~~~~DvVf 106 (376)
||+|+|+ |.+|..+...|...+ .++.++ +++. .-+.+... + ..+.+. .++. ...++|+||
T Consensus 17 kI~iIG~-G~mG~~la~~L~~~G---~~V~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aDvVi 90 (366)
T 1evy_A 17 KAVVFGS-GAFGTALAMVLSKKC---REVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFT-SDVEKAYNGAEIIL 90 (366)
T ss_dssp EEEEECC-SHHHHHHHHHHTTTE---EEEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE-SCHHHHHTTCSSEE
T ss_pred eEEEECC-CHHHHHHHHHHHhCC---CEEEEE-ECCHHHHHHHHHcCcccccccccccccceeee-CCHHHHHcCCCEEE
Confidence 9999998 999999999998753 455544 3321 00011100 0 012221 1222 246899999
Q ss_pred EcCCCchhhhhHHH----H---HhC-CCeEEEcCCCC
Q 017153 107 FSAGGSISKKFGPI----A---VEK-GSIVVDNSSAF 135 (376)
Q Consensus 107 ~a~~~~~s~~~~~~----~---~~~-G~~VIDlS~~~ 135 (376)
+|++.....+.... + +.. |..|||++...
T Consensus 91 lav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 91 FVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp ECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred ECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 99998766665554 3 345 88999998543
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0008 Score=63.10 Aligned_cols=88 Identities=14% Similarity=0.187 Sum_probs=53.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCc-hhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGS-ISKK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~-~s~~ 116 (376)
+||+|+|+ |.+|..+.+.|.+.+| ++.+. +++.. -+.+.. ....... ++++ +.++|+||+|+|.. ...+
T Consensus 2 ~~I~iiG~-G~mG~~~a~~l~~~G~---~V~~~-dr~~~~~~~~~~--~g~~~~~-~~~~~~~~advvi~~v~~~~~~~~ 73 (287)
T 3pdu_A 2 TTYGFLGL-GIMGGPMAANLVRAGF---DVTVW-NRNPAKCAPLVA--LGARQAS-SPAEVCAACDITIAMLADPAAARE 73 (287)
T ss_dssp CCEEEECC-STTHHHHHHHHHHHTC---CEEEE-CSSGGGGHHHHH--HTCEECS-CHHHHHHHCSEEEECCSSHHHHHH
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHH--CCCeecC-CHHHHHHcCCEEEEEcCCHHHHHH
Confidence 68999997 9999999999987644 44433 33221 111111 1122221 2222 36799999999986 3333
Q ss_pred hH---HHH---HhCCCeEEEcCCCC
Q 017153 117 FG---PIA---VEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~---~~~---~~~G~~VIDlS~~~ 135 (376)
.. ..+ ...|..|||.|...
T Consensus 74 v~~~~~~l~~~l~~g~~vv~~st~~ 98 (287)
T 3pdu_A 74 VCFGANGVLEGIGGGRGYIDMSTVD 98 (287)
T ss_dssp HHHSTTCGGGTCCTTCEEEECSCCC
T ss_pred HHcCchhhhhcccCCCEEEECCCCC
Confidence 33 222 34678899998753
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0047 Score=57.79 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=47.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC----CC--CCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS----FD--GVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~----~~--~~DvVf~a~~~~ 112 (376)
.++|.|.||||++|+.|++.|.+++ .+++++......+. ....+ +. +++. +. ++|+||.|.+..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~---~~~~D--l~--d~~~~~~~~~~~~~d~vih~A~~~ 71 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN---WHAVGCGFRRARPK---FEQVN--LL--DSNAVHHIIHDFQPHVIVHCAAER 71 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT---CEEEEEC-------------------------CHHHHHHHCCSEEEECC---
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC---CeEEEEccCCCCCC---eEEec--CC--CHHHHHHHHHhhCCCEEEECCccc
Confidence 3789999999999999999999863 46665542111111 00001 11 1222 22 489999987642
Q ss_pred h------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 I------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
. +....+.+.+.|+++|-.|+..
T Consensus 72 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 112 (315)
T 2ydy_A 72 RPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDY 112 (315)
T ss_dssp ----------------CHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred ChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHH
Confidence 1 1223344445577888777754
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0045 Score=56.88 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=52.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
|||+|+|+ |.+|..+.+.|.+.+| ++.. .+++........ ....+. .++++ +.++|+||+|+|.....+.
T Consensus 1 M~I~iIG~-G~mG~~la~~l~~~g~---~V~~-~~~~~~~~~~~~~~~~g~~---~~~~~~~~~aDvvi~~v~~~~~~~~ 72 (264)
T 1i36_A 1 LRVGFIGF-GEVAQTLASRLRSRGV---EVVT-SLEGRSPSTIERARTVGVT---ETSEEDVYSCPVVISAVTPGVALGA 72 (264)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTC---EEEE-CCTTCCHHHHHHHHHHTCE---ECCHHHHHTSSEEEECSCGGGHHHH
T ss_pred CeEEEEec-hHHHHHHHHHHHHCCC---eEEE-eCCccCHHHHHHHHHCCCc---CCHHHHHhcCCEEEEECCCHHHHHH
Confidence 58999998 9999999999987643 5554 333101011110 001122 22322 4689999999999866555
Q ss_pred HHHHHhC--CCeEEEcCCC
Q 017153 118 GPIAVEK--GSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~~~--G~~VIDlS~~ 134 (376)
+..+.+. + .|||.|+-
T Consensus 73 ~~~~~~~~~~-~vi~~s~~ 90 (264)
T 1i36_A 73 ARRAGRHVRG-IYVDINNI 90 (264)
T ss_dssp HHHHHTTCCS-EEEECSCC
T ss_pred HHHHHHhcCc-EEEEccCC
Confidence 5555442 3 78888764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=61.09 Aligned_cols=71 Identities=23% Similarity=0.397 Sum_probs=44.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcC-CCCCeEEEEEecCC-CCCceeeecC--cceEEee----cCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKR-SAGKQLSFQD--KAYTVEE----LTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~-~~p~~~l~~v~s~~-~~g~~~~~~~--~~~~v~~----~~~~~~~~~DvVf~a~~~ 111 (376)
|||+|+||+|+||..++.+|..+ +++ .+++++.... ..|+.....+ ....+.. -+.+++.++|+|+++.|.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~-~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSG-SELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT-EEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCC-ceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 68999999999999999988764 333 5777665432 2233221111 1223332 123457899999998764
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.014 Score=54.83 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+.++|.|.||||++|+.|++.|.+++ .++.++.
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~ 42 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHG---YKVRGTA 42 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC---CEEEEEe
Confidence 345899999999999999999998863 3666554
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0093 Score=60.21 Aligned_cols=91 Identities=12% Similarity=0.278 Sum_probs=63.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCe---EEEEEecCCCCCceeee-cCcceEEeecCcc--------CCCCCcEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR---SIKMLASKRSAGKQLSF-QDKAYTVEELTED--------SFDGVDIAL 106 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~---~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~~--------~~~~~DvVf 106 (376)
++||.|+|+ |-||+.++++|.++ +++ +++ ++++...++.+.. .+.......++.+ .+.+.|+|+
T Consensus 13 ~~rVlIIGa-GgVG~~va~lla~~--~dv~~~~I~-vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVI 88 (480)
T 2ph5_A 13 KNRFVILGF-GCVGQALMPLIFEK--FDIKPSQVT-IIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLI 88 (480)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHH--BCCCGGGEE-EEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEE
T ss_pred CCCEEEECc-CHHHHHHHHHHHhC--CCCceeEEE-EeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEE
Confidence 478999998 99999999999987 655 454 3444444433221 1112222233222 234459999
Q ss_pred EcCCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 107 FSAGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.+.+...+......++++|+..||.+.
T Consensus 89 N~s~~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 89 DVSIGISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp ECCSSSCHHHHHHHHHHHTCEEEESSC
T ss_pred ECCccccCHHHHHHHHHcCCCEEECCC
Confidence 999999999999999999999999986
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0022 Score=59.21 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=51.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE-eecCccCCC--CCcEEEEcCCCch--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFD--GVDIALFSAGGSI-- 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v-~~~~~~~~~--~~DvVf~a~~~~~-- 113 (376)
+|||.|.||||++|+.|++.|.++ ..++.++. +. .+ ++.- ..+ .+.+. ++|+||.|.+...
T Consensus 5 ~m~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~-r~-~~--------D~~d~~~~-~~~~~~~~~d~vi~~a~~~~~~ 70 (287)
T 3sc6_A 5 KERVIITGANGQLGKQLQEELNPE---EYDIYPFD-KK-LL--------DITNISQV-QQVVQEIRPHIIIHCAAYTKVD 70 (287)
T ss_dssp CEEEEEESTTSHHHHHHHHHSCTT---TEEEEEEC-TT-TS--------CTTCHHHH-HHHHHHHCCSEEEECCCCCCHH
T ss_pred eeEEEEECCCCHHHHHHHHHHHhC---CCEEEEec-cc-cc--------CCCCHHHH-HHHHHhcCCCEEEECCcccChH
Confidence 469999999999999999999886 35666554 21 11 1100 000 01122 6899998876432
Q ss_pred ----------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 ----------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 ----------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.....+.+.+.|+++|-+|+..
T Consensus 71 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~ 108 (287)
T 3sc6_A 71 QAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDY 108 (287)
T ss_dssp HHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhh
Confidence 1223444456688888888764
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.018 Score=54.42 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=52.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-eeeecCcceEEeecC---ccC----CCC--CcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELT---EDS----FDG--VDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-~~~~~~~~~~v~~~~---~~~----~~~--~DvVf~a~ 109 (376)
++|.|.||||++|+.|++.|.+++ .+++++........ .+... ..+.+...| ++. +.+ +|+||.|.
T Consensus 22 ~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~l~~~-~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A 97 (333)
T 2q1w_A 22 KKVFITGICGQIGSHIAELLLERG---DKVVGIDNFATGRREHLKDH-PNLTFVEGSIADHALVNQLIGDLQPDAVVHTA 97 (333)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEECCSSCCGGGSCCC-TTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCC---CEEEEEECCCccchhhHhhc-CCceEEEEeCCCHHHHHHHHhccCCcEEEECc
Confidence 789999999999999999998863 46766643221111 11100 123332222 221 234 99999987
Q ss_pred CCchh---------------hhhHHHHHhCCC-eEEEcCCC
Q 017153 110 GGSIS---------------KKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 110 ~~~~s---------------~~~~~~~~~~G~-~VIDlS~~ 134 (376)
+.... ....+.+.+.|+ ++|-.|+.
T Consensus 98 ~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~ 138 (333)
T 2q1w_A 98 ASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTA 138 (333)
T ss_dssp CCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred eecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcH
Confidence 64321 223344445675 67766664
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0038 Score=62.26 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=52.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-------C-ceeeec-----------CcceEEeecCcc-CC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------G-KQLSFQ-----------DKAYTVEELTED-SF 99 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-------g-~~~~~~-----------~~~~~v~~~~~~-~~ 99 (376)
|||+|+|+ |++|..+...|.+.+| ++..+. ++.. + .++... ...+... .+.+ .+
T Consensus 1 mkI~VIG~-G~vG~~~A~~la~~G~---~V~~~d-~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t-~~~~~~~ 74 (436)
T 1mv8_A 1 MRISIFGL-GYVGAVCAGCLSARGH---EVIGVD-VSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGT-TDFKKAV 74 (436)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTC---EEEEEC-SCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEEE-CCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEe-CCHHHHh
Confidence 58999997 9999999999988644 555442 2210 1 011000 0012222 1222 35
Q ss_pred CCCcEEEEcCCCch----------hhhhHHH---HHhC---CCeEEEcCCC
Q 017153 100 DGVDIALFSAGGSI----------SKKFGPI---AVEK---GSIVVDNSSA 134 (376)
Q Consensus 100 ~~~DvVf~a~~~~~----------s~~~~~~---~~~~---G~~VIDlS~~ 134 (376)
.++|+||.|+|... ..+.++. ++.. |..||+.|.-
T Consensus 75 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv 125 (436)
T 1mv8_A 75 LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTV 125 (436)
T ss_dssp HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCC
T ss_pred ccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCc
Confidence 68999999998755 3333333 3456 8889988654
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.017 Score=53.74 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=25.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.|.||||++|+.|++.|.+++ .++.++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 31 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG---YEVVVVD 31 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCC---CEEEEEe
Confidence 589999999999999999998874 3666554
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.015 Score=55.37 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=57.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-------e-cCcceEEee----cCccCCC-CCcEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-------F-QDKAYTVEE----LTEDSFD-GVDIA 105 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-------~-~~~~~~v~~----~~~~~~~-~~DvV 105 (376)
+|||+|+|+ |.+|..+...|.+.+ .++..+. ++.. +.+. . ...+..+.. .++++.. ++|+|
T Consensus 2 ~mkI~IiGa-GaiG~~~a~~L~~~g---~~V~~~~-r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlV 75 (320)
T 3i83_A 2 SLNILVIGT-GAIGSFYGALLAKTG---HCVSVVS-RSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCT 75 (320)
T ss_dssp -CEEEEESC-CHHHHHHHHHHHHTT---CEEEEEC-STTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC---CeEEEEe-CChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEE
Confidence 489999999 999999999998764 3665554 3322 1111 1 011121111 1233443 89999
Q ss_pred EEcCCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 106 LFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
|+|++.....+..+.+. ..+..||.+..-+
T Consensus 76 ilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi 108 (320)
T 3i83_A 76 LLCIKVVEGADRVGLLRDAVAPDTGIVLISNGI 108 (320)
T ss_dssp EECCCCCTTCCHHHHHTTSCCTTCEEEEECSSS
T ss_pred EEecCCCChHHHHHHHHhhcCCCCEEEEeCCCC
Confidence 99999988877777664 3467788877665
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0072 Score=56.55 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=57.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cceeee----------cC------------cceEEeec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF----------QD------------KAYTVEEL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~~----------~~------------~~~~v~~~ 94 (376)
..||+|+|+ |.+|..+.+.|..+++ ++.+. +++.. .+.... .+ ..+... .
T Consensus 4 ~~kV~VIGa-G~mG~~iA~~la~~G~---~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~ 77 (283)
T 4e12_A 4 ITNVTVLGT-GVLGSQIAFQTAFHGF---AVTAY-DINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS-D 77 (283)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-S
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-C
Confidence 469999998 9999999999988743 66544 33211 000000 00 012222 2
Q ss_pred Ccc-CCCCCcEEEEcCCCc--hhhhhHHHH---HhCCCeEEEcCCCCC
Q 017153 95 TED-SFDGVDIALFSAGGS--ISKKFGPIA---VEKGSIVVDNSSAFR 136 (376)
Q Consensus 95 ~~~-~~~~~DvVf~a~~~~--~s~~~~~~~---~~~G~~VIDlS~~~R 136 (376)
+.+ .+.++|+||.|+|.. .-.+...++ ...++.++|+++...
T Consensus 78 ~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~ 125 (283)
T 4e12_A 78 DLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLL 125 (283)
T ss_dssp CHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred CHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 332 367999999999987 444444444 346888999988764
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0041 Score=57.55 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
++++|.|.||||++|+.|++.|.++++
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~ 31 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAG 31 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence 458999999999999999999998744
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.012 Score=55.98 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=57.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------CCceeeecCcceE--Ee-ecCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AGKQLSFQDKAYT--VE-ELTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------~g~~~~~~~~~~~--v~-~~~~~~~~~~DvVf~a 108 (376)
++||+|+|+ |.+|..+...|.+.++ ++..+ .+.. .|..+...+.... +. ..+.+...++|+||+|
T Consensus 19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~---~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~vila 93 (318)
T 3hwr_A 19 GMKVAIMGA-GAVGCYYGGMLARAGH---EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAVQGADLVLFC 93 (318)
T ss_dssp -CEEEEESC-SHHHHHHHHHHHHTTC---EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGGTTCSEEEEC
T ss_pred CCcEEEECc-CHHHHHHHHHHHHCCC---eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHcCCCCEEEEE
Confidence 589999999 9999999999987643 56555 3211 1211111010111 11 1123345789999999
Q ss_pred CCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 109 AGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 109 ~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
++.....+..+.+. ..+..||.+..-+
T Consensus 94 vk~~~~~~~l~~l~~~l~~~~~iv~~~nGi 123 (318)
T 3hwr_A 94 VKSTDTQSAALAMKPALAKSALVLSLQNGV 123 (318)
T ss_dssp CCGGGHHHHHHHHTTTSCTTCEEEEECSSS
T ss_pred cccccHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 99987777776654 3467788887766
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.032 Score=52.24 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|+|.|.||||++|+.|++.|.+++ .++.++.
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~ 32 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEG---LSVVVVD 32 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC---CEEEEEe
Confidence 689999999999999999998863 4666554
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0036 Score=63.47 Aligned_cols=92 Identities=15% Similarity=0.283 Sum_probs=56.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec--CcceEEeecCccC-CC---CCcEEEEcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ--DKAYTVEELTEDS-FD---GVDIALFSAG 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~--~~~~~v~~~~~~~-~~---~~DvVf~a~~ 110 (376)
.+++|+|+|+ |.+|..+.+.|.+++| ++.+. +++.. -+.+... +..+... .++++ .. .+|+||+|+|
T Consensus 14 ~~~~IgvIGl-G~MG~~lA~~La~~G~---~V~v~-~r~~~~~~~l~~~~~~~gi~~~-~s~~e~v~~l~~aDvVil~Vp 87 (480)
T 2zyd_A 14 SKQQIGVVGM-AVMGRNLALNIESRGY---TVSIF-NRSREKTEEVIAENPGKKLVPY-YTVKEFVESLETPRRILLMVK 87 (480)
T ss_dssp -CBSEEEECC-SHHHHHHHHHHHTTTC---CEEEE-CSSHHHHHHHHHHSTTSCEEEC-SSHHHHHHTBCSSCEEEECSC
T ss_pred CCCeEEEEcc-HHHHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHhhCCCCCeEEe-CCHHHHHhCCCCCCEEEEECC
Confidence 3688999998 9999999999998754 45433 33211 0111100 0123222 12222 23 4999999999
Q ss_pred Cc-hhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 111 GS-ISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~-~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
.. ...+....+. +.|..|||.+...
T Consensus 88 ~~~~v~~vl~~l~~~l~~g~iIId~s~g~ 116 (480)
T 2zyd_A 88 AGAGTDAAIDSLKPYLDKGDIIIDGGNTF 116 (480)
T ss_dssp SSSHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 95 5556665553 3588999998875
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.023 Score=53.44 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=43.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC--ceeee--cCcceEEeecC---ccC----CCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG--KQLSF--QDKAYTVEELT---EDS----FDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g--~~~~~--~~~~~~v~~~~---~~~----~~~~DvVf~ 107 (376)
.|||.|.||||++|+.|++.|.+++ +..++.++......+ ..+.. ....+.+...| ++. +.++|+||.
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g-~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 81 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKH-PDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH 81 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC-TTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHhC-CCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence 3789999999999999999888752 135776664321111 11110 01123333223 111 257899999
Q ss_pred cCCCc
Q 017153 108 SAGGS 112 (376)
Q Consensus 108 a~~~~ 112 (376)
|.+..
T Consensus 82 ~A~~~ 86 (336)
T 2hun_A 82 LAAES 86 (336)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98753
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0022 Score=62.24 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=55.7
Q ss_pred cCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-C----CCCcEEE
Q 017153 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-F----DGVDIAL 106 (376)
Q Consensus 33 ~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~----~~~DvVf 106 (376)
|+.....+||+|||. |.+|..+.+.|...+ .++.+. +++... +.....+ +... .+.++ + .++|+||
T Consensus 2 m~~~~~~~kIgIIG~-G~mG~slA~~L~~~G---~~V~~~-dr~~~~~~~a~~~G--~~~~-~~~~e~~~~a~~~aDlVi 73 (341)
T 3ktd_A 2 MTTKDISRPVCILGL-GLIGGSLLRDLHAAN---HSVFGY-NRSRSGAKSAVDEG--FDVS-ADLEATLQRAAAEDALIV 73 (341)
T ss_dssp ----CCSSCEEEECC-SHHHHHHHHHHHHTT---CCEEEE-CSCHHHHHHHHHTT--CCEE-SCHHHHHHHHHHTTCEEE
T ss_pred CCccCCCCEEEEEee-cHHHHHHHHHHHHCC---CEEEEE-eCCHHHHHHHHHcC--Ceee-CCHHHHHHhcccCCCEEE
Confidence 333344578999997 999999999998864 345433 332210 0000011 1111 12221 2 2579999
Q ss_pred EcCCCchhhhhHHHHH--hCCCeEEEcCCC
Q 017153 107 FSAGGSISKKFGPIAV--EKGSIVVDNSSA 134 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~--~~G~~VIDlS~~ 134 (376)
+|+|.....+....+. ..|+.|+|.++.
T Consensus 74 lavP~~~~~~vl~~l~~~~~~~iv~Dv~Sv 103 (341)
T 3ktd_A 74 LAVPMTAIDSLLDAVHTHAPNNGFTDVVSV 103 (341)
T ss_dssp ECSCHHHHHHHHHHHHHHCTTCCEEECCSC
T ss_pred EeCCHHHHHHHHHHHHccCCCCEEEEcCCC
Confidence 9999877666665443 468899999876
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0068 Score=59.86 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=60.0
Q ss_pred ccccccCCCCCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCC--CCC-eE-EEEEecCCCC--Cceee----
Q 017153 14 ISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRD--FPY-RS-IKMLASKRSA--GKQLS---- 83 (376)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~--~p~-~~-l~~v~s~~~~--g~~~~---- 83 (376)
..-+++.++|....-.+-.+ +++.||+|+|+ |-.|..|...|.+++ ++. ++ .+.+..++.. ++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~---~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in 87 (391)
T 4fgw_A 12 SGHLNAGRKRSSSSVSLKAA---EKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIIN 87 (391)
T ss_dssp ------------------------CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHT
T ss_pred hhhhcccccccccccccccc---CCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHH
Confidence 45566666666544443332 34679999999 999999999997642 221 21 2334444321 11110
Q ss_pred ec--------C----cceEEeecCc-cCCCCCcEEEEcCCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 84 FQ--------D----KAYTVEELTE-DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 84 ~~--------~----~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
.. + .++.+. .|. +.+.++|++|+|+|+..-++...++. ..+..+|.++--+
T Consensus 88 ~~~~N~~YLpgv~Lp~~i~~t-~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 88 TRHQNVKYLPGITLPDNLVAN-PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp TTCCBTTTBTTCCCCSSEEEE-SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred hcCcCcccCCCCcCCCCcEEe-CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 00 0 122222 122 23579999999999998888887764 4577888887666
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.04 Score=51.77 Aligned_cols=138 Identities=11% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ce----ee-------ecC----------------cceE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQ----LS-------FQD----------------KAYT 90 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~----~~-------~~~----------------~~~~ 90 (376)
++||+|+|+ |.+|..+...|..+++ ++.++ +++..- +. +. ..+ ..+.
T Consensus 15 ~~~I~VIG~-G~mG~~iA~~la~~G~---~V~~~-d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 15 VKHVTVIGG-GLMGAGIAQVAAATGH---TVVLV-DQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 368999999 9999999999988643 66544 332110 00 00 000 0122
Q ss_pred EeecCcc-CCCCCcEEEEcCCCchh--hhhHHHHH---hCCCeEEEcCCCCCCCC---C-----CcEEeeccCHHhhcCc
Q 017153 91 VEELTED-SFDGVDIALFSAGGSIS--KKFGPIAV---EKGSIVVDNSSAFRMVE---N-----VPLVIPEVNPEAMSGI 156 (376)
Q Consensus 91 v~~~~~~-~~~~~DvVf~a~~~~~s--~~~~~~~~---~~G~~VIDlS~~~R~~~---~-----~~~~lpevN~~~i~~~ 156 (376)
+. .+.+ .+.++|+||+|+|.... .+....+. ..++.|+++++..-... . ...++.-+|+..+..
T Consensus 90 ~~-~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~- 167 (302)
T 1f0y_A 90 TS-TDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMK- 167 (302)
T ss_dssp EE-SCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCC-
T ss_pred Ee-cCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCc-
Confidence 22 2333 46799999999998652 23344432 34677888887763211 1 113343344433221
Q ss_pred ccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCC
Q 017153 157 KVGMGKGALIANPNCSTIICLMAATPLHRRAKV 189 (376)
Q Consensus 157 ~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i 189 (376)
...++..+.+..-. .-.+.+|.+..+.
T Consensus 168 -----~~~i~~g~~~~~e~-~~~~~~l~~~~G~ 194 (302)
T 1f0y_A 168 -----LVEVIKTPMTSQKT-FESLVDFSKALGK 194 (302)
T ss_dssp -----EEEEECCTTCCHHH-HHHHHHHHHHTTC
T ss_pred -----eEEEeCCCCCCHHH-HHHHHHHHHHcCC
Confidence 12355555444443 4456778787664
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.026 Score=54.08 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCCC-ceeee--cCcceEEeecC---cc----CCCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAG-KQLSF--QDKAYTVEELT---ED----SFDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~g-~~~~~--~~~~~~v~~~~---~~----~~~~~DvVf~ 107 (376)
.++|.|.||||++|+.|++.|.++ +.. ++.++. ++... ..+.. ....+.+...| .+ .+.++|+||.
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~--~g~~~V~~~~-r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih 97 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDT--TNAKKIIVYS-RDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH 97 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH--CCCSEEEEEE-SCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhh--CCCCEEEEEE-CChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 479999999999999999988875 233 666554 32110 00000 01123332222 11 2468999999
Q ss_pred cCCCchh------------------hhhHHHHHhCCC-eEEEcCCCC
Q 017153 108 SAGGSIS------------------KKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 108 a~~~~~s------------------~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
|.+.... ....+.+.+.|+ ++|-+|++.
T Consensus 98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~ 144 (344)
T 2gn4_A 98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDK 144 (344)
T ss_dssp CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGG
T ss_pred CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 8864321 123334455675 577777753
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.015 Score=58.37 Aligned_cols=89 Identities=22% Similarity=0.204 Sum_probs=53.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecC---cc----CCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~ 110 (376)
.++|.|+| +|++|+.+++.|.+. ..++.+ .+++.. .+.+............| .+ .+.++|+|+.|+|
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~---G~~V~v-~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDS---GIKVTV-ACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTT---TCEEEE-EESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhC---cCEEEE-EECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 37899999 599999999999875 346543 343211 11111100112221112 11 1368999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS 132 (376)
...........+++|..++|.+
T Consensus 78 ~~~~~~i~~a~l~~g~~vvd~~ 99 (450)
T 1ff9_A 78 YTFHATVIKSAIRQKKHVVTTS 99 (450)
T ss_dssp --CHHHHHHHHHHHTCEEEESS
T ss_pred cccchHHHHHHHhCCCeEEEee
Confidence 8766666666677889999875
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0025 Score=59.66 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=49.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
|||+|+|+ |.+|..+.+.|.+.++ ++. +.+++.. -+.+.. ..+.+.. +.++ +.++|+||+|+|.... .+
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~---~V~-~~~~~~~~~~~~~~--~g~~~~~-~~~~~~~~~Dvvi~~vp~~~~~~~ 72 (296)
T 2gf2_A 1 MPVGFIGL-GNMGNPMAKNLMKHGY---PLI-IYDVFPDACKEFQD--AGEQVVS-SPADVAEKADRIITMLPTSINAIE 72 (296)
T ss_dssp CCEEEECC-STTHHHHHHHHHHTTC---CEE-EECSSTHHHHHHHT--TTCEECS-SHHHHHHHCSEEEECCSSHHHHHH
T ss_pred CeEEEEec-cHHHHHHHHHHHHCCC---EEE-EEeCCHHHHHHHHH--cCCeecC-CHHHHHhcCCEEEEeCCCHHHHHH
Confidence 47999998 9999999999987643 444 3333211 011111 1222221 2222 4578999999976543 33
Q ss_pred hHHH------HHhCCCeEEEcCC
Q 017153 117 FGPI------AVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~~~------~~~~G~~VIDlS~ 133 (376)
.... .+..|..|||.++
T Consensus 73 v~~~~~~~~~~l~~~~~vv~~s~ 95 (296)
T 2gf2_A 73 AYSGANGILKKVKKGSLLIDSST 95 (296)
T ss_dssp HHHSTTSGGGTCCTTCEEEECSC
T ss_pred HHhCchhHHhcCCCCCEEEECCC
Confidence 3322 1245788998554
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0054 Score=58.85 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=56.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-------CCceeeecCcceE--Eee-cCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------AGKQLSFQDKAYT--VEE-LTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-------~g~~~~~~~~~~~--v~~-~~~~~~~~~DvVf~a 108 (376)
.|||+|+|+ |.+|..+...|.+.++ ++..+. ++. .|..+...+.... +.. .++++..++|+||+|
T Consensus 3 ~mkI~IiGa-G~~G~~~a~~L~~~g~---~V~~~~-r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGA-GAVGGYLGARLALAGE---AINVLA-RGATLQALQTAGLRLTEDGATHTLPVRATHDAAALGEQDVVIVA 77 (335)
T ss_dssp CCCEEEESC-CHHHHHHHHHHHHTTC---CEEEEC-CHHHHHHHHHTCEEEEETTEEEEECCEEESCHHHHCCCSEEEEC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC---EEEEEE-ChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHHcCCCCEEEEe
Confidence 479999998 9999999999987644 454443 211 1111111001111 111 123335789999999
Q ss_pred CCCchhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 109 AGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 109 ~~~~~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
++.....+..+.+. ..+..||.+..-+
T Consensus 78 vk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 78 VKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp CCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred CCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 99976666555443 3577888887764
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0088 Score=55.96 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=49.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE-eecCccCCC--CCcEEEEcCCCch--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFD--GVDIALFSAGGSI-- 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v-~~~~~~~~~--~~DvVf~a~~~~~-- 113 (376)
+|||.|.||||++|+.|++.|.++++ +++++ .++..+ ++.- ..+ ...+. ++|+||.|.+...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~---~v~~~-~r~~~~--------D~~d~~~~-~~~~~~~~~d~vih~a~~~~~~ 69 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGD---VELVL-RTRDEL--------NLLDSRAV-HDFFASERIDQVYLAAAKVGGI 69 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTT---EEEEC-CCTTTC--------CTTCHHHH-HHHHHHHCCSEEEECCCCCCCH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCC---eEEEE-ecCccC--------CccCHHHH-HHHHHhcCCCEEEEcCeecCCc
Confidence 47999999999999999999988643 55443 332211 1100 000 01133 7899999876432
Q ss_pred -----------------hhhhHHHHHhCCC-eEEEcCCCC
Q 017153 114 -----------------SKKFGPIAVEKGS-IVVDNSSAF 135 (376)
Q Consensus 114 -----------------s~~~~~~~~~~G~-~VIDlS~~~ 135 (376)
+....+.+.+.|+ ++|-.|+..
T Consensus 70 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~ 109 (321)
T 1e6u_A 70 VANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSC 109 (321)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred chhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHH
Confidence 1122233445676 677777754
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0061 Score=54.65 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=27.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~ 73 (376)
+++|.|.||||++|+.+++.|.++ + ..++.++.
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~--~~g~~V~~~~ 37 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEG--SDKFVAKGLV 37 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TTTCEEEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhc--CCCcEEEEEE
Confidence 479999999999999999999886 3 56777654
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0046 Score=62.49 Aligned_cols=91 Identities=13% Similarity=0.285 Sum_probs=55.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec--CcceEEeecCccCC----CCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ--DKAYTVEELTEDSF----DGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~--~~~~~v~~~~~~~~----~~~DvVf~a~~~ 111 (376)
++||+|+|+ |.+|..+.+.|.+++| ++. +.+++.. -+.+... +..+... .+++++ .++|+||+|+|.
T Consensus 5 ~~~IgvIG~-G~mG~~lA~~L~~~G~---~V~-v~dr~~~~~~~l~~~~~~~gi~~~-~s~~e~v~~l~~aDvVilavp~ 78 (474)
T 2iz1_A 5 QANFGVVGM-AVMGKNLALNVESRGY---TVA-IYNRTTSKTEEVFKEHQDKNLVFT-KTLEEFVGSLEKPRRIMLMVQA 78 (474)
T ss_dssp TBSEEEECC-SHHHHHHHHHHHHTTC---CEE-EECSSHHHHHHHHHHTTTSCEEEC-SSHHHHHHTBCSSCEEEECCCT
T ss_pred CCcEEEEee-HHHHHHHHHHHHhCCC---EEE-EEcCCHHHHHHHHHhCcCCCeEEe-CCHHHHHhhccCCCEEEEEccC
Confidence 478999998 9999999999988754 444 3333211 0111100 0122221 122222 349999999999
Q ss_pred c-hhhhhHHHH---HhCCCeEEEcCCCC
Q 017153 112 S-ISKKFGPIA---VEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~-~s~~~~~~~---~~~G~~VIDlS~~~ 135 (376)
. ...+....+ ++.|..|||.+...
T Consensus 79 ~~~v~~vl~~l~~~l~~g~iiId~s~~~ 106 (474)
T 2iz1_A 79 GAATDATIKSLLPLLDIGDILIDGGNTH 106 (474)
T ss_dssp THHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred chHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 6 344555444 34688999998764
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.016 Score=52.88 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=58.9
Q ss_pred CCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEe--ecCccC
Q 017153 23 RTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVE--ELTEDS 98 (376)
Q Consensus 23 ~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~--~~~~~~ 98 (376)
+.-|+|-.++ .++|.|+|+ |-+|...++.|.+. ..++.+++ ++.. ..+.. ....+.+. .+.+++
T Consensus 21 ~~~Pifl~L~------gk~VLVVGg-G~va~~ka~~Ll~~---GA~VtVva-p~~~-~~l~~l~~~~~i~~i~~~~~~~d 88 (223)
T 3dfz_A 21 HMYTVMLDLK------GRSVLVVGG-GTIATRRIKGFLQE---GAAITVVA-PTVS-AEINEWEAKGQLRVKRKKVGEED 88 (223)
T ss_dssp -CCEEEECCT------TCCEEEECC-SHHHHHHHHHHGGG---CCCEEEEC-SSCC-HHHHHHHHTTSCEEECSCCCGGG
T ss_pred CccccEEEcC------CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEC-CCCC-HHHHHHHHcCCcEEEECCCCHhH
Confidence 3457775554 489999999 99999999999885 34565554 3221 11111 01123332 344567
Q ss_pred CCCCcEEEEcCCCchhhhhHHHHHhCCCeE
Q 017153 99 FDGVDIALFSAGGSISKKFGPIAVEKGSIV 128 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s~~~~~~~~~~G~~V 128 (376)
+.++|+||.|++....-..+..+.+.|+.|
T Consensus 89 L~~adLVIaAT~d~~~N~~I~~~ak~gi~V 118 (223)
T 3dfz_A 89 LLNVFFIVVATNDQAVNKFVKQHIKNDQLV 118 (223)
T ss_dssp SSSCSEEEECCCCTHHHHHHHHHSCTTCEE
T ss_pred hCCCCEEEECCCCHHHHHHHHHHHhCCCEE
Confidence 889999999998876555555544567664
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.062 Score=50.52 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=41.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC---eEEEEEecCCCCCc--eeee--cCcceEEeecC---cc----CCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY---RSIKMLASKRSAGK--QLSF--QDKAYTVEELT---ED----SFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~---~~l~~v~s~~~~g~--~~~~--~~~~~~v~~~~---~~----~~~~~DvV 105 (376)
|||.|.||||++|+.|++.|.++..+. .++.++......+. .+.. ....+.+...| ++ .+.++|+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 80 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence 589999999999999999887630123 57776643221111 1110 01123333222 11 13689999
Q ss_pred EEcCCC
Q 017153 106 LFSAGG 111 (376)
Q Consensus 106 f~a~~~ 111 (376)
|.|.+.
T Consensus 81 ih~A~~ 86 (337)
T 1r6d_A 81 VHFAAE 86 (337)
T ss_dssp EECCSC
T ss_pred EECCCc
Confidence 998764
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.022 Score=54.29 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=63.4
Q ss_pred CCEEEEE-CcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-C--CCcEEEEcCCCchh
Q 017153 39 APSVAVV-GVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIv-GaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~--~~DvVf~a~~~~~s 114 (376)
+.+++|+ |+||..|..+++.|.+++ +++++...++..|+.+ ..+++.. +.+++ . ++|+++.|+|....
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G---~~~v~~VnP~~~g~~i----~G~~vy~-sl~el~~~~~vD~avI~vP~~~~ 84 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYG---TNLVGGTTPGKGGKTH----LGLPVFN-TVKEAKEQTGATASVIYVPPPFA 84 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHT---CEEEEEECTTCTTCEE----TTEEEES-SHHHHHHHHCCCEEEECCCHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCC---CcEEEEeCCCcCcceE----CCeeeec-hHHHhhhcCCCCEEEEecCHHHH
Confidence 4668888 999999999999888763 4555555555444332 1244443 12222 3 79999999999999
Q ss_pred hhhHHHHHhCCCeE-EEcCCCC
Q 017153 115 KKFGPIAVEKGSIV-VDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~~G~~V-IDlS~~~ 135 (376)
.+.+.++.++|++. |-.+..+
T Consensus 85 ~~~~~e~i~~Gi~~iv~~t~G~ 106 (305)
T 2fp4_A 85 AAAINEAIDAEVPLVVCITEGI 106 (305)
T ss_dssp HHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHCCCCEEEEECCCC
Confidence 99999999999986 5556544
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.024 Score=53.64 Aligned_cols=91 Identities=14% Similarity=0.307 Sum_probs=56.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC-------cceEEee----cCccCCCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-------KAYTVEE----LTEDSFDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~-------~~~~v~~----~~~~~~~~~DvVf~ 107 (376)
+|||+|+|+ |.+|..+...|...++ ++..+. ++.. +.+...+ ....+.. .+++....+|+||+
T Consensus 2 ~mkI~IiGa-GaiG~~~a~~L~~~g~---~V~~~~-r~~~-~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~vil 75 (312)
T 3hn2_A 2 SLRIAIVGA-GALGLYYGALLQRSGE---DVHFLL-RRDY-EAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLVLV 75 (312)
T ss_dssp --CEEEECC-STTHHHHHHHHHHTSC---CEEEEC-STTH-HHHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC---eEEEEE-cCcH-HHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEEEE
Confidence 478999999 9999999999987643 455443 3321 1111111 1111111 12233468999999
Q ss_pred cCCCchhhhhHHHHHh---CCCeEEEcCCCC
Q 017153 108 SAGGSISKKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
|++.....+..+.+.. .+..||.+..-+
T Consensus 76 avk~~~~~~~l~~l~~~l~~~~~iv~l~nGi 106 (312)
T 3hn2_A 76 GLKTFANSRYEELIRPLVEEGTQILTLQNGL 106 (312)
T ss_dssp CCCGGGGGGHHHHHGGGCCTTCEEEECCSSS
T ss_pred ecCCCCcHHHHHHHHhhcCCCCEEEEecCCC
Confidence 9999888877776643 467788776655
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0069 Score=61.35 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=54.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CC-ceeeecC-----------cceEEeecCc-cCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AG-KQLSFQD-----------KAYTVEELTE-DSF 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g-~~~~~~~-----------~~~~v~~~~~-~~~ 99 (376)
.|||+|+|+ ||+|..+...|++.+| ++..+..... .+ .++...+ ..+.+. .++ +.+
T Consensus 8 ~~~I~VIG~-G~vG~~lA~~la~~G~---~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a~ 82 (478)
T 2y0c_A 8 SMNLTIIGS-GSVGLVTGACLADIGH---DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAAV 82 (478)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHHH
T ss_pred CceEEEECc-CHHHHHHHHHHHhCCC---EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHHh
Confidence 489999998 9999999999988644 5555432110 01 0111001 012222 123 234
Q ss_pred CCCcEEEEcCCC----------chhhhhHHHH---HhCCCeEEEcCC
Q 017153 100 DGVDIALFSAGG----------SISKKFGPIA---VEKGSIVVDNSS 133 (376)
Q Consensus 100 ~~~DvVf~a~~~----------~~s~~~~~~~---~~~G~~VIDlS~ 133 (376)
.++|+||.|+|+ ....+..+.+ +..|..||+.|.
T Consensus 83 ~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ST 129 (478)
T 2y0c_A 83 AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKST 129 (478)
T ss_dssp HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 689999999988 4444444433 346888999885
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.032 Score=54.61 Aligned_cols=92 Identities=11% Similarity=0.153 Sum_probs=54.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec--CC---------CCCceee--e-cCcceE----E--eecCcc-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KR---------SAGKQLS--F-QDKAYT----V--EELTED- 97 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s--~~---------~~g~~~~--~-~~~~~~----v--~~~~~~- 97 (376)
+|||+|+|+ |.+|..+...|... ...++.++.. ++ ..|..+. . .+.... + ...+++
T Consensus 2 ~mkI~ViGa-G~~G~~~a~~La~~--~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (404)
T 3c7a_A 2 TVKVCVCGG-GNGAHTLSGLAASR--DGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI 78 (404)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTS--TTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred CceEEEECC-CHHHHHHHHHHHhC--CCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence 379999999 99999999999763 2346665541 21 0010010 0 010011 0 111222
Q ss_pred CCCCCcEEEEcCCCchhhhhHHHHHh---CCCeEEEcCC
Q 017153 98 SFDGVDIALFSAGGSISKKFGPIAVE---KGSIVVDNSS 133 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s~~~~~~~~~---~G~~VIDlS~ 133 (376)
...++|+||+|++.....+.++.+.. .+..||++.+
T Consensus 79 a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~ 117 (404)
T 3c7a_A 79 AISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPS 117 (404)
T ss_dssp HHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTC
T ss_pred HhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 24689999999999888777766643 4677888544
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.017 Score=55.22 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=43.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCce--eeec---CcceEEeecCccCCCCCcEEEEcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQ--LSFQ---DKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~--~~~~---~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
+++||+|+|+ |++|..++-.|...++ .-+++.+--.. ..|.. +... ..+..+...+.+++.++|+||.+.+
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~-~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g 83 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG 83 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence 4589999999 9999999998887632 23666553221 11110 0000 1234444334556889999999987
Q ss_pred Cc
Q 017153 111 GS 112 (376)
Q Consensus 111 ~~ 112 (376)
..
T Consensus 84 ~p 85 (318)
T 1y6j_A 84 AN 85 (318)
T ss_dssp C-
T ss_pred CC
Confidence 63
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.04 Score=52.32 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=26.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.||||++|+.|++.|.+++ .++.++.
T Consensus 27 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 58 (352)
T 1sb8_A 27 PKVWLITGVAGFIGSNLLETLLKLD---QKVVGLD 58 (352)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 3799999999999999999998863 3666554
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.04 Score=51.90 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.||||++|+.|++.|.+++ .+++++.
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~ 36 (341)
T 3enk_A 5 KGTILVTGGAGYIGSHTAVELLAHG---YDVVIAD 36 (341)
T ss_dssp SCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CcEEEEecCCcHHHHHHHHHHHHCC---CcEEEEe
Confidence 5799999999999999999998864 4666554
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0041 Score=62.96 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|||+|+|+ |++|..+...|.+++ +..++..+.
T Consensus 8 ~~mkI~VIG~-G~vG~~~A~~La~~g-~g~~V~~~D 41 (481)
T 2o3j_A 8 KVSKVVCVGA-GYVGGPTCAMIAHKC-PHITVTVVD 41 (481)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHHHC-TTSEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 3579999998 999999999888752 245666553
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.014 Score=56.07 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=26.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKML 72 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v 72 (376)
+++||+|+||+|++|..++..|..+++ +..+++++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~ 42 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL 42 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEE
Confidence 358999999999999999998887622 11367665
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.029 Score=51.21 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=51.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~ 111 (376)
+++|.|.|+||++|+.|++.|.++ ..++.++. ++... ... ..+.+...| ++ .+.++|+||.|.+.
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~-r~~~~-~~~---~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 73 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTL---AHEVRLSD-IVDLG-AAE---AHEEIVACDLADAQAVHDLVKDCDGIIHLGGV 73 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGT---EEEEEECC-SSCCC-CCC---TTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CceEEEECCCCHHHHHHHHHHHhC---CCEEEEEe-CCCcc-ccC---CCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence 368999999999999999999886 34665543 32221 111 112222222 11 13689999998764
Q ss_pred ch--------------hhhhHHHHHhCCC-eEEEcCCC
Q 017153 112 SI--------------SKKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 112 ~~--------------s~~~~~~~~~~G~-~VIDlS~~ 134 (376)
.. .....+.+.+.|+ ++|-+|+.
T Consensus 74 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 111 (267)
T 3ay3_A 74 SVERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSN 111 (267)
T ss_dssp CSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCH
Confidence 21 1223334445665 56666664
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0096 Score=60.40 Aligned_cols=91 Identities=12% Similarity=0.243 Sum_probs=56.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec---CcceEEeecCccC----CCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ---DKAYTVEELTEDS----FDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~---~~~~~v~~~~~~~----~~~~DvVf~a~~ 110 (376)
+++|+|||. |.+|..+.+.|.+++| ++.+. +++.. -+.+... +..+... .++++ +.++|+||+|+|
T Consensus 4 ~~kIgiIGl-G~MG~~lA~~L~~~G~---~V~v~-dr~~~~~~~l~~~g~~g~~i~~~-~s~~e~v~~l~~aDvVil~Vp 77 (484)
T 4gwg_A 4 QADIALIGL-AVMGQNLILNMNDHGF---VVCAF-NRTVSKVDDFLANEAKGTKVVGA-QSLKEMVSKLKKPRRIILLVK 77 (484)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHHTTC---CEEEE-CSSTHHHHHHHHTTTTTSSCEEC-SSHHHHHHTBCSSCEEEECSC
T ss_pred CCEEEEECh-hHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHhcccCCCceecc-CCHHHHHhhccCCCEEEEecC
Confidence 478999998 9999999999998754 45433 33211 0111111 1112111 12222 346999999999
Q ss_pred Cc-hhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 111 GS-ISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~-~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
.. ...+....+. +.|..|||.|...
T Consensus 78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~ 106 (484)
T 4gwg_A 78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSE 106 (484)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence 97 4444444443 4688999999875
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0095 Score=60.30 Aligned_cols=90 Identities=11% Similarity=0.222 Sum_probs=55.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-c--CcceEEeecCccCC----CCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-Q--DKAYTVEELTEDSF----DGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-~--~~~~~v~~~~~~~~----~~~DvVf~a~~~ 111 (376)
|||+|+|+ |.+|..+.+.|.+++| ++.+ .+++.. -+.+.. . +..+... .+++++ .++|+||+|+|.
T Consensus 3 m~IgvIG~-G~mG~~lA~~La~~G~---~V~v-~dr~~~~~~~l~~~~~~g~gi~~~-~~~~e~v~~l~~aDvVilaVp~ 76 (482)
T 2pgd_A 3 ADIALIGL-AVMGQNLILNMNDHGF---VVCA-FNRTVSKVDDFLANEAKGTKVLGA-HSLEEMVSKLKKPRRIILLVKA 76 (482)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTC---CEEE-ECSSTHHHHHHHHTTTTTSSCEEC-SSHHHHHHHBCSSCEEEECSCT
T ss_pred CeEEEECh-HHHHHHHHHHHHHCCC---eEEE-EeCCHHHHHHHHhccccCCCeEEe-CCHHHHHhhccCCCEEEEeCCC
Confidence 68999998 9999999999988754 4443 333211 011111 0 0122222 122222 489999999999
Q ss_pred c-hhhhhHHHH---HhCCCeEEEcCCCC
Q 017153 112 S-ISKKFGPIA---VEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~-~s~~~~~~~---~~~G~~VIDlS~~~ 135 (376)
. ...+....+ ++.|..|||++...
T Consensus 77 ~~~v~~vl~~l~~~l~~g~iII~~s~~~ 104 (482)
T 2pgd_A 77 GQAVDNFIEKLVPLLDIGDIIIDGGNSE 104 (482)
T ss_dssp THHHHHHHHHHHHHCCTTCEEEECSCCC
T ss_pred hHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 6 455555444 34688999997654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0094 Score=55.05 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=25.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++||.|.|+ |++|+.|++.|.++++ ++.++.
T Consensus 3 ~~~ilVtGa-G~iG~~l~~~L~~~g~---~V~~~~ 33 (286)
T 3gpi_A 3 LSKILIAGC-GDLGLELARRLTAQGH---EVTGLR 33 (286)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTC---CEEEEE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC---EEEEEe
Confidence 478999995 9999999999988743 666554
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.014 Score=55.64 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=25.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.||||++|+.|++.|.+++ ..++.++.
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g--~~~V~~~~ 78 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKG--ITDILVVD 78 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT--CCCEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CcEEEEEe
Confidence 3789999999999999999998863 24565554
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.045 Score=53.73 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
+++|.|.||||++|+.|++.|.+. ..++.++..
T Consensus 69 ~~~vlVTGatG~iG~~l~~~L~~~---g~~V~~~~R 101 (427)
T 4f6c_A 69 LGNTLLTGATGFLGAYLIEALQGY---SHRIYCFIR 101 (427)
T ss_dssp CEEEEEECTTSHHHHHHHHHHTTT---EEEEEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHHcC---CCEEEEEEC
Confidence 468999999999999999999764 567776653
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.0031 Score=56.34 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=52.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
.+||+|+|+ |.+|..+.+.|.+.+ .++.+. +++..-..+.. ....... ..+.+.++|+||+|++.....+..
T Consensus 19 ~~~I~iIG~-G~mG~~la~~L~~~G---~~V~~~-~r~~~~~~~~~--~g~~~~~-~~~~~~~aDvVilav~~~~~~~v~ 90 (201)
T 2yjz_A 19 QGVVCIFGT-GDFGKSLGLKMLQCG---YSVVFG-SRNPQVSSLLP--RGAEVLC-YSEAASRSDVIVLAVHREHYDFLA 90 (201)
Confidence 578999998 999999999988753 344433 33322111111 1122211 123346899999999987554443
Q ss_pred HHHH--hCCCeEEEcCCCC
Q 017153 119 PIAV--EKGSIVVDNSSAF 135 (376)
Q Consensus 119 ~~~~--~~G~~VIDlS~~~ 135 (376)
.+. ..|..|||+++-.
T Consensus 91 -~l~~~~~~~ivI~~~~G~ 108 (201)
T 2yjz_A 91 -ELADSLKGRVLIDVSNNQ 108 (201)
Confidence 221 2467788888765
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.013 Score=57.80 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=50.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCc----------------ceEEeecCc-cCCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDK----------------AYTVEELTE-DSFDG 101 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~----------------~~~v~~~~~-~~~~~ 101 (376)
|||+|+|+ |++|..+...|.+ +| ++..+. ++.. -+.+...+. .+.+. .++ +.+.+
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~---~V~~~d-~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t-~~~~~~~~~ 73 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QN---EVTIVD-ILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKAT-LDSKAAYKE 73 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TS---EEEEEC-SCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE-SCHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CC---EEEEEE-CCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEe-CCHHHHhcC
Confidence 58999998 9999999999987 54 555443 2110 000100000 11221 122 23457
Q ss_pred CcEEEEcCCCch-----------hhhhHHHH--HhCCCeEEEcCCC
Q 017153 102 VDIALFSAGGSI-----------SKKFGPIA--VEKGSIVVDNSSA 134 (376)
Q Consensus 102 ~DvVf~a~~~~~-----------s~~~~~~~--~~~G~~VIDlS~~ 134 (376)
+|+||.|+|... ..+..+.+ +..|..||+.|.-
T Consensus 74 aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~ 119 (402)
T 1dlj_A 74 AELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTI 119 (402)
T ss_dssp CSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCC
T ss_pred CCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 899999999873 33333322 4567888985543
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.017 Score=54.75 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------CceeeecCcceEEeec--CccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSFQDKAYTVEEL--TEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------g~~~~~~~~~~~v~~~--~~~~~~~~DvVf~a 108 (376)
+|||+|+|+ |.+|..+...|. .++ ++.++. ++.. |-.+...+.. ..... +.+....+|+||+|
T Consensus 2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~---~V~~~~-r~~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 2 SLKIGIIGG-GSVGLLCAYYLS-LYH---DVTVVT-RRQEQAAAIQSEGIRLYKGGEE-FRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CCEEEEECC-SHHHHHHHHHHH-TTS---EEEEEC-SCHHHHHHHHHHCEEEEETTEE-EEECCEEESSCCSCCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHh-cCC---ceEEEE-CCHHHHHHHHhCCceEecCCCe-ecccccccccccCCCCEEEEE
Confidence 489999999 999999999888 633 555444 3211 1111111111 01111 12234679999999
Q ss_pred CCCchhhhhHHHHHh--CCCeEEEcCCCC
Q 017153 109 AGGSISKKFGPIAVE--KGSIVVDNSSAF 135 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~--~G~~VIDlS~~~ 135 (376)
++.....+..+.+.. .+. ||.+..-+
T Consensus 75 vK~~~~~~~l~~l~~~~~~~-ivs~~nGi 102 (307)
T 3ego_A 75 VKQHQLQSVFSSLERIGKTN-ILFLQNGM 102 (307)
T ss_dssp CCGGGHHHHHHHTTSSCCCE-EEECCSSS
T ss_pred eCHHHHHHHHHHhhcCCCCe-EEEecCCc
Confidence 999887777766542 233 66555443
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.072 Score=50.18 Aligned_cols=70 Identities=13% Similarity=0.152 Sum_probs=41.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC------eEEEEEecCCCCCceeeecCcceEEeecC---ccC----C-CCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY------RSIKMLASKRSAGKQLSFQDKAYTVEELT---EDS----F-DGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~------~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~----~-~~~Dv 104 (376)
.|+|.|.||||++|+.|++.|.++ .. .++.++......... .....+.+...| ++. + .++|+
T Consensus 14 ~~~vlVtGa~G~iG~~l~~~L~~~--g~~~~r~~~~V~~~~r~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~ 89 (342)
T 2hrz_A 14 GMHIAIIGAAGMVGRKLTQRLVKD--GSLGGKPVEKFTLIDVFQPEAPA--GFSGAVDARAADLSAPGEAEKLVEARPDV 89 (342)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHH--CEETTEEEEEEEEEESSCCCCCT--TCCSEEEEEECCTTSTTHHHHHHHTCCSE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhc--CCcccCCCceEEEEEccCCcccc--ccCCceeEEEcCCCCHHHHHHHHhcCCCE
Confidence 478999999999999999999876 32 466655432211110 001122222222 221 2 47999
Q ss_pred EEEcCCCc
Q 017153 105 ALFSAGGS 112 (376)
Q Consensus 105 Vf~a~~~~ 112 (376)
||.+.+..
T Consensus 90 vih~A~~~ 97 (342)
T 2hrz_A 90 IFHLAAIV 97 (342)
T ss_dssp EEECCCCC
T ss_pred EEECCccC
Confidence 99988753
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.038 Score=50.86 Aligned_cols=83 Identities=16% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE-eecCccCCC--CCcEEEEcCCCch--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFD--GVDIALFSAGGSI-- 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v-~~~~~~~~~--~~DvVf~a~~~~~-- 113 (376)
.++|.|.||||++|+.|++.|.++ ..++.++. ++ .+ ++.- ..+ .+.+. ++|+||.|.+...
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~-r~-~~--------Dl~d~~~~-~~~~~~~~~d~vih~A~~~~~~ 77 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGK---NVEVIPTD-VQ-DL--------DITNVLAV-NKFFNEKKPNVVINCAAHTAVD 77 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTS---SEEEEEEC-TT-TC--------CTTCHHHH-HHHHHHHCCSEEEECCCCCCHH
T ss_pred cceEEEECCCChHHHHHHHHHHhC---CCeEEecc-Cc-cC--------CCCCHHHH-HHHHHhcCCCEEEECCccCCHH
Confidence 489999999999999999999886 35666553 32 11 1100 000 01123 6899999876432
Q ss_pred ----------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 ----------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 ----------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+....+.+.+.|+++|-.|+..
T Consensus 78 ~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~ 115 (292)
T 1vl0_A 78 KCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDY 115 (292)
T ss_dssp HHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHH
Confidence 1222333444567888777753
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.013 Score=56.32 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKM 71 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~ 71 (376)
|||.|.||||++|+.|++.|.++ +.++++.
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~--g~~~v~~ 30 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTST--TDHHIFE 30 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CCCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCEEEE
Confidence 68999999999999999999887 4445553
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.014 Score=55.30 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.||||++|+.|++.|.++++ ++.++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~---~V~~~~ 33 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGY---LPVVID 33 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTC---CEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---EEEEEe
Confidence 47999999999999999999988643 565553
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0089 Score=55.34 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=49.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC----CC--CCcEEEEcCCCch
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS----FD--GVDIALFSAGGSI 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~----~~--~~DvVf~a~~~~~ 113 (376)
|||.|.||||++|+.|++.|. ++ .++.++. ++.. .+. .++ . +++. +. ++|+||.|.+...
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g---~~V~~~~-r~~~--~~~---~D~--~--d~~~~~~~~~~~~~d~vih~a~~~~ 66 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PV---GNLIALD-VHSK--EFC---GDF--S--NPKGVAETVRKLRPDVIVNAAAHTA 66 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TT---SEEEEEC-TTCS--SSC---CCT--T--CHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cC---CeEEEec-cccc--ccc---ccC--C--CHHHHHHHHHhcCCCEEEECcccCC
Confidence 589999999999999999998 63 3666554 3221 000 011 0 1111 23 4899999876432
Q ss_pred ------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 114 ------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 114 ------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
+....+.+.+.|+++|-.|+..
T Consensus 67 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 106 (299)
T 1n2s_A 67 VDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDY 106 (299)
T ss_dssp HHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGG
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence 1222333345677888777753
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.022 Score=52.88 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.|+||++|+.|++.|.++ ++..+++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-~~g~~V~~~~ 35 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKL-YGTENVIASD 35 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHH-HCGGGEEEEE
T ss_pred CceEEEECCccHHHHHHHHHHHHh-CCCCEEEEEc
Confidence 378999999999999999988764 0134566554
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.059 Score=51.98 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=64.3
Q ss_pred CCEEEEECcccHHHHHHHHH--HhcCCCCCeEEEEEecCCCCC--ceeeecCcc--eEEeecCccC-C---CCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSV--LSDRDFPYRSIKMLASKRSAG--KQLSFQDKA--YTVEELTEDS-F---DGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~--L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~--~~v~~~~~~~-~---~~~DvVf~a 108 (376)
..||.|.|+||..++.++.. +.++ ++.++++..++...| +.+.++... ++++. +.++ . .++|+++.+
T Consensus 10 ~tkviV~G~~Gk~~~~ml~~~~~~~r--~~~~vVagV~P~~~g~~~~v~~G~~~~Gvpvy~-sv~ea~~~~p~~DlaVi~ 86 (334)
T 3mwd_B 10 HTKAIVWGMQTRAVQGMLDFDYVCSR--DEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFK-NMADAMRKHPEVDVLINF 86 (334)
T ss_dssp TCCEEEESCCHHHHHHHHHHHHHTTC--SSCSEEEEECTTSCSEEEEEEETTEEEEEEEES-SHHHHHHHCTTCCEEEEC
T ss_pred CCeEEEECCchHHHHHHHHhcccccC--CCceEEEEEcCCCCCccceEeccCccCCceeeC-CHHHHhhcCCCCcEEEEe
Confidence 58999999999988877775 5566 678999988887765 555444332 44442 1122 1 268999999
Q ss_pred CCCchhhhhHHHHHh-CCCe-EEEcCCCC
Q 017153 109 AGGSISKKFGPIAVE-KGSI-VVDNSSAF 135 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~-~G~~-VIDlS~~~ 135 (376)
+|.....+.+.+.++ +|++ ||-+|.-|
T Consensus 87 vp~~~a~~ai~ea~~~~Gv~~vViiT~G~ 115 (334)
T 3mwd_B 87 ASLRSAYDSTMETMNYAQIRTIAIIAEGI 115 (334)
T ss_dssp CCTTTHHHHHHHHTTSTTCCEEEECCSCC
T ss_pred cCHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 999777655544555 8987 55457666
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0052 Score=61.93 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+|||+|+|+ |++|..+...|.+.+ +..++.++
T Consensus 5 ~mkI~VIG~-G~mG~~lA~~La~~g-~G~~V~~~ 36 (467)
T 2q3e_A 5 IKKICCIGA-GYVGGPTCSVIAHMC-PEIRVTVV 36 (467)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHHC-TTSEEEEE
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEE
Confidence 379999997 999999999988752 13466554
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.016 Score=54.47 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeec-Cc-cCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEEL-TE-DSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~s~ 115 (376)
..+|+|+|+ |.+|+.+++.|...+ .++.+.. ++... ......+ ...... +. +.+.++|+|+.|+|.....
T Consensus 155 g~~v~IiG~-G~iG~~~a~~l~~~G---~~V~~~d-r~~~~~~~~~~~g--~~~~~~~~l~~~l~~aDvVi~~~p~~~i~ 227 (293)
T 3d4o_A 155 GANVAVLGL-GRVGMSVARKFAALG---AKVKVGA-RESDLLARIAEMG--MEPFHISKAAQELRDVDVCINTIPALVVT 227 (293)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEE-SSHHHHHHHHHTT--SEEEEGGGHHHHTTTCSEEEECCSSCCBC
T ss_pred CCEEEEEee-CHHHHHHHHHHHhCC---CEEEEEE-CCHHHHHHHHHCC--CeecChhhHHHHhcCCCEEEECCChHHhC
Confidence 479999998 999999999998752 4665443 32110 0010011 112111 11 2357899999999975432
Q ss_pred hhHHHHHhCCCeEEEcCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~ 134 (376)
+..-...+.|..+||.+..
T Consensus 228 ~~~l~~mk~~~~lin~ar~ 246 (293)
T 3d4o_A 228 ANVLAEMPSHTFVIDLASK 246 (293)
T ss_dssp HHHHHHSCTTCEEEECSST
T ss_pred HHHHHhcCCCCEEEEecCC
Confidence 2222234678999998853
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.025 Score=45.99 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE-e-ec-Cc-----cCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-E-EL-TE-----DSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v-~-~~-~~-----~~~~~~DvVf~a~~ 110 (376)
.|+|+|+|+ |++|+.+++.|.+.+ .++.++......-+.+... ....+ . +. ++ ..+.++|+||.|++
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g---~~v~~~d~~~~~~~~~~~~-~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKG---HDIVLIDIDKDICKKASAE-IDALVINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHH-CSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHh-cCcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 479999998 999999999998763 4666554221111111100 01211 1 11 11 12468999999999
Q ss_pred Cchh
Q 017153 111 GSIS 114 (376)
Q Consensus 111 ~~~s 114 (376)
....
T Consensus 79 ~~~~ 82 (140)
T 1lss_A 79 KEEV 82 (140)
T ss_dssp CHHH
T ss_pred CchH
Confidence 8644
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.061 Score=51.01 Aligned_cols=32 Identities=9% Similarity=0.247 Sum_probs=26.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.|.||||++|+.|++.|.++ +..+++++.
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~--~g~~V~~~~ 32 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKN--TQDTVVNID 32 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHH--CSCEEEEEE
T ss_pred CEEEEECCCchHhHHHHHHHHhc--CCCeEEEEe
Confidence 57999999999999999988875 345777664
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.013 Score=55.92 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=42.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeeecCcceEEee----cCcc-CCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEE----LTED-SFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~~~~~~~v~~----~~~~-~~~~~DvVf~a~~~ 111 (376)
|||+|+||+|++|..++..|..+++ ..+++++--....+. .+........+.. .+.+ .+.++|+||.+.+.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~-~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 5899999999999999999987632 245665532221111 0111111112322 2333 47899999999754
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0091 Score=56.71 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=53.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~ 116 (376)
+.|||+||- |..|.-+.+.|.+.+| ++.+. +++. .-+.+... ...... ++.+ ..++|+||.|+|...+.+
T Consensus 3 M~kIgfIGl-G~MG~~mA~~L~~~G~---~v~v~-dr~~~~~~~l~~~--Ga~~a~-s~~e~~~~~dvv~~~l~~~~~v~ 74 (300)
T 3obb_A 3 MKQIAFIGL-GHMGAPMATNLLKAGY---LLNVF-DLVQSAVDGLVAA--GASAAR-SARDAVQGADVVISMLPASQHVE 74 (300)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHTTC---EEEEE-CSSHHHHHHHHHT--TCEECS-SHHHHHTTCSEEEECCSCHHHHH
T ss_pred cCEEEEeee-hHHHHHHHHHHHhCCC---eEEEE-cCCHHHHHHHHHc--CCEEcC-CHHHHHhcCCceeecCCchHHHH
Confidence 469999997 9999999999988654 55543 3321 11111111 112211 2333 478999999999876543
Q ss_pred hHHH-------HHhCCCeEEEcCCCC
Q 017153 117 FGPI-------AVEKGSIVVDNSSAF 135 (376)
Q Consensus 117 ~~~~-------~~~~G~~VIDlS~~~ 135 (376)
.+-. ....|..|||+|...
T Consensus 75 ~V~~~~~g~~~~~~~g~iiId~sT~~ 100 (300)
T 3obb_A 75 GLYLDDDGLLAHIAPGTLVLECSTIA 100 (300)
T ss_dssp HHHHSSSSSTTSCCC-CEEEECSCCC
T ss_pred HHHhchhhhhhcCCCCCEEEECCCCC
Confidence 3211 123477899998764
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.047 Score=54.77 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=54.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC------Cc-eeeecC-----------cceEEeecCc-cCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA------GK-QLSFQD-----------KAYTVEELTE-DSF 99 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~------g~-~~~~~~-----------~~~~v~~~~~-~~~ 99 (376)
..|++|+|. ||+|.-+...|++.+| ++..+.-.... |. ++...+ ..+.+. .++ +..
T Consensus 8 ~~~~~vIGl-G~vG~~~A~~La~~G~---~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-td~~ea~ 82 (446)
T 4a7p_A 8 SVRIAMIGT-GYVGLVSGACFSDFGH---EVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-TDLAEGV 82 (446)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHHH
T ss_pred ceEEEEEcC-CHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-CCHHHHH
Confidence 489999998 9999999999998644 66655322111 11 000000 113332 233 345
Q ss_pred CCCcEEEEcCCCch-----------hhhhHHHH---HhCCCeEEEcCCC
Q 017153 100 DGVDIALFSAGGSI-----------SKKFGPIA---VEKGSIVVDNSSA 134 (376)
Q Consensus 100 ~~~DvVf~a~~~~~-----------s~~~~~~~---~~~G~~VIDlS~~ 134 (376)
.++|++|.|+|+.. -.+....+ +..|..||+.|.-
T Consensus 83 ~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv 131 (446)
T 4a7p_A 83 KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV 131 (446)
T ss_dssp TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 78999999976543 22333333 3468899998854
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.026 Score=52.94 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=55.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cC-cceEEeecCccCC-CCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QD-KAYTVEELTEDSF-DGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~-~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~ 115 (376)
+|||+|+|+ |.+|..+...|.+.++ ++.++. ++..+-.... .+ ....+.....+.+ .++|+||+|++.....
T Consensus 2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~---~V~~~~-r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~ 76 (294)
T 3g17_A 2 SLSVAIIGP-GAVGTTIAYELQQSLP---HTTLIG-RHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLD 76 (294)
T ss_dssp -CCEEEECC-SHHHHHHHHHHHHHCT---TCEEEE-SSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHH
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCC---eEEEEE-eccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHH
Confidence 479999999 9999999998886543 333333 3322111111 11 1112221112334 6899999999998777
Q ss_pred hhHHHHH---hCCCeEEEcCCCC
Q 017153 116 KFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 116 ~~~~~~~---~~G~~VIDlS~~~ 135 (376)
+..+.+. ..+..||.+..-+
T Consensus 77 ~~l~~l~~~l~~~~~iv~~~nGi 99 (294)
T 3g17_A 77 AVIPHLTYLAHEDTLIILAQNGY 99 (294)
T ss_dssp HHGGGHHHHEEEEEEEEECCSSC
T ss_pred HHHHHHHHhhCCCCEEEEeccCc
Confidence 7666554 3456788777665
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=55.19 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=51.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~ 116 (376)
.++|+|+|+ |.+|+.+++.|.+. .. ++. +.+++.. .+.+.... ...+.. +. +.+.++|+|+.|+|.....+
T Consensus 129 ~~~v~iiGa-G~~g~aia~~L~~~--g~-~V~-v~~r~~~~~~~l~~~~-g~~~~~-~~~~~~~~aDiVi~atp~~~~~~ 201 (275)
T 2hk9_A 129 EKSILVLGA-GGASRAVIYALVKE--GA-KVF-LWNRTKEKAIKLAQKF-PLEVVN-SPEEVIDKVQVIVNTTSVGLKDE 201 (275)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHH--TC-EEE-EECSSHHHHHHHTTTS-CEEECS-CGGGTGGGCSEEEECSSTTSSTT
T ss_pred CCEEEEECc-hHHHHHHHHHHHHc--CC-EEE-EEECCHHHHHHHHHHc-CCeeeh-hHHhhhcCCCEEEEeCCCCCCCC
Confidence 479999998 99999999999876 32 554 3443311 11111110 122221 22 33468999999999876421
Q ss_pred ---hH-HHHHhCCCeEEEcCC
Q 017153 117 ---FG-PIAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ---~~-~~~~~~G~~VIDlS~ 133 (376)
.. ....+.|..|+|++.
T Consensus 202 ~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 202 DPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp CCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCHHHcCCCCEEEEcCC
Confidence 11 122356777888765
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.037 Score=52.36 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=43.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--c------CcceEEeecCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--Q------DKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--~------~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
+||+|+|+ |.+|..++..|..++. ..++..+. ++. .-+.+.. . .....+...+.+.+.++|+||.|++
T Consensus 2 ~kI~VIGa-G~~G~~la~~L~~~g~-~~~V~l~d-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~aDvViiav~ 78 (309)
T 1hyh_A 2 RKIGIIGL-GNVGAAVAHGLIAQGV-ADDYVFID-ANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLG 78 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEEC-SSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEc-CCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhCCCCEEEEecC
Confidence 69999996 9999999998887642 13565443 221 0001110 0 0123332234455789999999998
Q ss_pred Cch
Q 017153 111 GSI 113 (376)
Q Consensus 111 ~~~ 113 (376)
...
T Consensus 79 ~~~ 81 (309)
T 1hyh_A 79 NIK 81 (309)
T ss_dssp CGG
T ss_pred Ccc
Confidence 754
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.014 Score=55.13 Aligned_cols=89 Identities=17% Similarity=0.181 Sum_probs=52.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEee-cCc-cCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEE-LTE-DSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~-~~~-~~~~~~DvVf~a~~~~~s~ 115 (376)
.++|+|+|+ |.+|+.+++.|... ..++.+.. ++.. .......+ ..+.. .+. +.+.++|+|+.|+|.....
T Consensus 157 g~~v~IiG~-G~iG~~~a~~l~~~---G~~V~~~d-~~~~~~~~~~~~g--~~~~~~~~l~~~l~~aDvVi~~~p~~~i~ 229 (300)
T 2rir_A 157 GSQVAVLGL-GRTGMTIARTFAAL---GANVKVGA-RSSAHLARITEMG--LVPFHTDELKEHVKDIDICINTIPSMILN 229 (300)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEE-SSHHHHHHHHHTT--CEEEEGGGHHHHSTTCSEEEECCSSCCBC
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHC---CCEEEEEE-CCHHHHHHHHHCC--CeEEchhhHHHHhhCCCEEEECCChhhhC
Confidence 479999998 99999999999875 24665443 3211 00000001 11211 122 2357899999999975432
Q ss_pred hhHHHHHhCCCeEEEcCCC
Q 017153 116 KFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~ 134 (376)
+..-...+.|..+||.+..
T Consensus 230 ~~~~~~mk~g~~lin~a~g 248 (300)
T 2rir_A 230 QTVLSSMTPKTLILDLASR 248 (300)
T ss_dssp HHHHTTSCTTCEEEECSST
T ss_pred HHHHHhCCCCCEEEEEeCC
Confidence 2111223568899998753
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.014 Score=59.41 Aligned_cols=91 Identities=13% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-c--CcceEEeecCccC----CCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-Q--DKAYTVEELTEDS----FDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-~--~~~~~v~~~~~~~----~~~~DvVf~a~~ 110 (376)
..+|+|+|+ |.+|..+.+.|.+++| ++.+. +++.. -+.+.. . +..+... .++++ +.++|+||+|+|
T Consensus 10 ~~~IgvIGl-G~MG~~lA~~La~~G~---~V~v~-dr~~~~~~~l~~~~~~~~gi~~~-~s~~e~v~~l~~aDvVil~Vp 83 (497)
T 2p4q_A 10 SADFGLIGL-AVMGQNLILNAADHGF---TVCAY-NRTQSKVDHFLANEAKGKSIIGA-TSIEDFISKLKRPRKVMLLVK 83 (497)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC---CEEEE-CSSSHHHHHHHHTTTTTSSEECC-SSHHHHHHTSCSSCEEEECCC
T ss_pred CCCEEEEee-HHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHcccccCCCeEEe-CCHHHHHhcCCCCCEEEEEcC
Confidence 478999998 9999999999998755 45433 33211 011111 0 0122221 12222 234999999999
Q ss_pred Cc-hhhhhHHHHH---hCCCeEEEcCCCC
Q 017153 111 GS-ISKKFGPIAV---EKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~-~s~~~~~~~~---~~G~~VIDlS~~~ 135 (376)
.. ...+....+. +.|..|||.|...
T Consensus 84 ~~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 84 AGAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 96 4555555543 4688999998765
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.1 Score=54.40 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---ccC-----CCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDS-----FDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~-----~~~~DvVf~a~~ 110 (376)
+++|.|.||||++|+.|++.|.++ +..++.++.........+. ....+.+...| ++. +.++|+||.|.+
T Consensus 315 ~~~VLVTGatG~IG~~l~~~Ll~~--~g~~V~~~~r~~~~~~~~~-~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~Aa 391 (660)
T 1z7e_A 315 RTRVLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRFL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 391 (660)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHS--SSEEEEEEESCCTTTGGGT-TCTTEEEEECCTTTCHHHHHHHHHHCSEEEECCC
T ss_pred CceEEEEcCCcHHHHHHHHHHHhc--CCCEEEEEEcCchhhhhhc-cCCceEEEECCCCCcHHHHHHhhcCCCEEEECce
Confidence 478999999999999999999875 4567776653222111110 01123332222 111 247899999865
Q ss_pred Cch------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 111 GSI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
... +....+.+.+.|.++|-.|+..
T Consensus 392 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~ 434 (660)
T 1z7e_A 392 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSE 434 (660)
T ss_dssp CCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred ecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHH
Confidence 322 1222334445677788787754
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.067 Score=50.71 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=27.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC--CCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF--PYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~--p~~~l~~v~s 74 (376)
|||.|.||||++|+.|++.|.+++. ...++.++..
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r 38 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR 38 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEES
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeC
Confidence 6899999999999999999988620 0157776653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.023 Score=54.63 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=42.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC--CCce--eeec----CcceEEeecCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQ--LSFQ----DKAYTVEELTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~--~g~~--~~~~----~~~~~v~~~~~~~~~~~DvVf~a~ 109 (376)
.+||+|+|+ |++|..++..|... +.+ +++.+-.... .|.. +... ...+.+..-+.+++.++|+||.|.
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~--~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~a 81 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQ--GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICA 81 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEec
Confidence 489999997 99999999988876 333 6665532111 1100 1111 122334333455678999999997
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 82 g~ 83 (326)
T 3pqe_A 82 GA 83 (326)
T ss_dssp SC
T ss_pred cc
Confidence 64
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.019 Score=55.06 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=42.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce--eeecCcceEEee---c-Cc-cCCCCCcEEEEcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSFQDKAYTVEE---L-TE-DSFDGVDIALFSAG 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~--~~~~~~~~~v~~---~-~~-~~~~~~DvVf~a~~ 110 (376)
++|||+|+||+|++|..++..|...+ ...+++++--....+.. +........+.. . +. +.+.++|+||.|.+
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g-~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNP-LVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCT-TEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCC-CCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 35899999999999999999887752 23466655322221111 111111112221 1 22 34689999999976
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 86 ~ 86 (326)
T 1smk_A 86 V 86 (326)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.056 Score=54.35 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=56.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC----Cce-ee--------ec--------CcceEEeecCcc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA----GKQ-LS--------FQ--------DKAYTVEELTED 97 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~----g~~-~~--------~~--------~~~~~v~~~~~~ 97 (376)
.+||+|+|+ |.+|..+...|..+++ ++..+ +++.. +.. +. .+ .....+ ..+.+
T Consensus 37 ~~kV~VIGa-G~MG~~iA~~la~~G~---~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~ 110 (463)
T 1zcj_A 37 VSSVGVLGL-GTMGRGIAISFARVGI---SVVAV-ESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTK 110 (463)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTC---EEEEE-CSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGG
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC---eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHH
Confidence 468999998 9999999999988644 55544 32211 000 00 00 000122 22344
Q ss_pred CCCCCcEEEEcCCCchh--hhhHHHH---HhCCCeEEEcCCCCC
Q 017153 98 SFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFR 136 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s--~~~~~~~---~~~G~~VIDlS~~~R 136 (376)
.+.++|+||+|+|.... .+...++ ...|+.++++++...
T Consensus 111 ~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~ 154 (463)
T 1zcj_A 111 ELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALN 154 (463)
T ss_dssp GGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred HHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcC
Confidence 56899999999998643 2333333 346888999887763
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.017 Score=55.23 Aligned_cols=73 Identities=18% Similarity=0.354 Sum_probs=44.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCc--eee----ecCcceEEeecCccCCCCCcEEEEcC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGK--QLS----FQDKAYTVEELTEDSFDGVDIALFSA 109 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~--~~~----~~~~~~~v~~~~~~~~~~~DvVf~a~ 109 (376)
+++||+|+|+ |.+|..++..|..+++ .-+++.+--.. ..|. .+. +.+.++.+..-+.+++.++|+|+.+.
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~-~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~a 82 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSI-VDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICA 82 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCS-CSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECC
Confidence 4589999999 9999999998876522 23565543211 1111 000 11123445443355689999999998
Q ss_pred CCc
Q 017153 110 GGS 112 (376)
Q Consensus 110 ~~~ 112 (376)
+..
T Consensus 83 g~~ 85 (317)
T 3d0o_A 83 GAA 85 (317)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.079 Score=49.79 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=26.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.||||++|+.|++.|+++++ +++++.
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~---~V~~~~ 40 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY---AVNTTV 40 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC---EEEEEE
Confidence 47899999999999999999988643 666544
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.044 Score=53.00 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=47.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|... ..++.+. +++... . ...... .+.+ .+.++|+|++|+|.+. +..
T Consensus 171 gktiGIIGl-G~IG~~vA~~l~~~---G~~V~~~-dr~~~~-~-----~~~~~~-~sl~ell~~aDvVil~vP~t~~t~~ 238 (340)
T 4dgs_A 171 GKRIGVLGL-GQIGRALASRAEAF---GMSVRYW-NRSTLS-G-----VDWIAH-QSPVDLARDSDVLAVCVAASAATQN 238 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEE-CSSCCT-T-----SCCEEC-SSHHHHHHTCSEEEECC--------
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEE-cCCccc-c-----cCceec-CCHHHHHhcCCEEEEeCCCCHHHHH
Confidence 479999998 99999999999865 3466544 332211 0 011111 1222 2468999999999542 222
Q ss_pred hH--H--HHHhCCCeEEEcCCC
Q 017153 117 FG--P--IAVEKGSIVVDNSSA 134 (376)
Q Consensus 117 ~~--~--~~~~~G~~VIDlS~~ 134 (376)
.. . ...+.|+.+||.+.-
T Consensus 239 li~~~~l~~mk~gailIN~aRG 260 (340)
T 4dgs_A 239 IVDASLLQALGPEGIVVNVARG 260 (340)
T ss_dssp --CHHHHHHTTTTCEEEECSCC
T ss_pred HhhHHHHhcCCCCCEEEECCCC
Confidence 21 1 123578889987643
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.059 Score=50.38 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhh--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK-- 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~-- 115 (376)
..+|.|+|+ |-+|+.++..|.+. . .++..+ +|+. ..+.+... ...... .+++.++|+||.|+|.+...
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~--G-~~v~V~-nRt~~ka~~la~~--~~~~~~--~~~l~~~DiVInaTp~Gm~~~~ 188 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQ--G-LQVSVL-NRSSRGLDFFQRL--GCDCFM--EPPKSAFDLIINATSASLHNEL 188 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--T-CEEEEE-CSSCTTHHHHHHH--TCEEES--SCCSSCCSEEEECCTTCCCCSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--C-CEEEEE-eCCHHHHHHHHHC--CCeEec--HHHhccCCEEEEcccCCCCCCC
Confidence 378999998 99999999999886 3 566544 4432 22222110 122222 33445899999999987432
Q ss_pred ----hhHHHHHhCCCeEEEcCC
Q 017153 116 ----KFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 116 ----~~~~~~~~~G~~VIDlS~ 133 (376)
+.....+..+..|+|+..
T Consensus 189 ~l~~~~l~~~l~~~~~v~D~vY 210 (269)
T 3phh_A 189 PLNKEVLKGYFKEGKLAYDLAY 210 (269)
T ss_dssp SSCHHHHHHHHHHCSEEEESCC
T ss_pred CCChHHHHhhCCCCCEEEEeCC
Confidence 111114456788888764
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.012 Score=56.24 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=27.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~ 73 (376)
+|||.|+||+|++|..|++.|..+++ +..+++++.
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D 42 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLE 42 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEe
Confidence 47999999999999999999887632 113676653
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.057 Score=52.00 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=50.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|+|+|+ |.+|+.+.+.|...+ .++.+. +++..... ..... .+.++ +.++|+|++|+|... ...
T Consensus 164 g~~vgIIG~-G~iG~~vA~~l~~~G---~~V~~~-dr~~~~~~------g~~~~-~~l~ell~~aDvVil~vP~~~~t~~ 231 (333)
T 3ba1_A 164 GKRVGIIGL-GRIGLAVAERAEAFD---CPISYF-SRSKKPNT------NYTYY-GSVVELASNSDILVVACPLTPETTH 231 (333)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTT---CCEEEE-CSSCCTTC------CSEEE-SCHHHHHHTCSEEEECSCCCGGGTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CEEEEE-CCCchhcc------Cceec-CCHHHHHhcCCEEEEecCCChHHHH
Confidence 368999998 999999999998753 455443 33221100 11111 12223 468999999999753 333
Q ss_pred hH--H--HHHhCCCeEEEcCC
Q 017153 117 FG--P--IAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~--~~~~~G~~VIDlS~ 133 (376)
.. . ...+.|+.+||.|.
T Consensus 232 li~~~~l~~mk~gailIn~sr 252 (333)
T 3ba1_A 232 IINREVIDALGPKGVLINIGR 252 (333)
T ss_dssp CBCHHHHHHHCTTCEEEECSC
T ss_pred HhhHHHHhcCCCCCEEEECCC
Confidence 32 1 23456788887664
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.041 Score=55.36 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=57.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cce-----ee---ecC-----------cceEEeecCccC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQ-----LS---FQD-----------KAYTVEELTEDS 98 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~-----~~---~~~-----------~~~~v~~~~~~~ 98 (376)
.+||+|||+ |..|..+...|+..+ +++.... ++.. +.. +. ..+ ..+... .+.+.
T Consensus 54 i~kVaVIGa-G~MG~~IA~~la~aG---~~V~l~D-~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl~a 127 (460)
T 3k6j_A 54 VNSVAIIGG-GTMGKAMAICFGLAG---IETFLVV-RNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDFHK 127 (460)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEC-SCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCGGG
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC---CeEEEEE-CcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCHHH
Confidence 479999999 999999999998864 4665543 2221 110 00 000 112222 23446
Q ss_pred CCCCcEEEEcCCCchh--hhhHHHHH---hCCCeEEEcCCCCC
Q 017153 99 FDGVDIALFSAGGSIS--KKFGPIAV---EKGSIVVDNSSAFR 136 (376)
Q Consensus 99 ~~~~DvVf~a~~~~~s--~~~~~~~~---~~G~~VIDlS~~~R 136 (376)
+.++|+||+|++.... .++..++. ..++.++++++..-
T Consensus 128 l~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~ 170 (460)
T 3k6j_A 128 LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLD 170 (460)
T ss_dssp CTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred HccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChh
Confidence 7899999999997543 23334443 46788889988764
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.017 Score=58.34 Aligned_cols=90 Identities=20% Similarity=0.289 Sum_probs=54.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--c----CcceEEeecCccCC----CCCcEEEEc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--Q----DKAYTVEELTEDSF----DGVDIALFS 108 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~----~~~~~v~~~~~~~~----~~~DvVf~a 108 (376)
|||+|+|+ |.+|..+.+.|.+++| ++. +.+++.. -+.+.. + ...+... .+.+++ .++|+||+|
T Consensus 2 MkIgVIG~-G~mG~~lA~~La~~G~---~V~-v~dr~~~~~~~l~~~~g~~~~~~~i~~~-~~~~e~v~~l~~aDvVila 75 (478)
T 1pgj_A 2 MDVGVVGL-GVMGANLALNIAEKGF---KVA-VFNRTYSKSEEFMKANASAPFAGNLKAF-ETMEAFAASLKKPRKALIL 75 (478)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTC---CEE-EECSSHHHHHHHHHHTTTSTTGGGEEEC-SCHHHHHHHBCSSCEEEEC
T ss_pred CEEEEECh-HHHHHHHHHHHHHCCC---EEE-EEeCCHHHHHHHHHhcCCCCCCCCeEEE-CCHHHHHhcccCCCEEEEe
Confidence 57999998 9999999999988754 444 3333211 001110 1 0112221 122222 359999999
Q ss_pred CCCc-hhhhhHHHH---HhCCCeEEEcCCCC
Q 017153 109 AGGS-ISKKFGPIA---VEKGSIVVDNSSAF 135 (376)
Q Consensus 109 ~~~~-~s~~~~~~~---~~~G~~VIDlS~~~ 135 (376)
+|.. ...+..+.+ ++.|..|||.+...
T Consensus 76 Vp~~~~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 76 VQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp CCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred cCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 9996 445555444 34688999988654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.034 Score=52.84 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=42.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---Cc--eeeec----CcceEEee-cCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GK--QLSFQ----DKAYTVEE-LTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---g~--~~~~~----~~~~~v~~-~~~~~~~~~DvVf~a 108 (376)
++||+|+|| |++|..++..|... +.++++ +.+.+.. |. .+... .....+.. .+.+++.++|+||.|
T Consensus 2 ~~kI~VIGa-G~vG~~~a~~la~~--g~~~v~-L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGA-GFVGSTTAHWLAAK--ELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVT 77 (309)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--CCCeEE-EEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHCCCCEEEEc
Confidence 479999999 99999999988876 334644 4433211 11 00000 11223332 345668899999999
Q ss_pred CCC
Q 017153 109 AGG 111 (376)
Q Consensus 109 ~~~ 111 (376)
.+.
T Consensus 78 ~g~ 80 (309)
T 1ur5_A 78 SGA 80 (309)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.09 Score=49.41 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=60.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~ 115 (376)
..++.|+|++..+|+-+.++|.+. . +.++....+.. .++ .+....+|+||.|++. .+..
T Consensus 158 gk~vvVvG~s~iVG~p~A~lL~~~--g~~atVtv~h~~t----------~~L------~~~~~~ADIVI~Avg~p~~I~~ 219 (281)
T 2c2x_A 158 GAHVVVIGRGVTVGRPLGLLLTRR--SENATVTLCHTGT----------RDL------PALTRQADIVVAAVGVAHLLTA 219 (281)
T ss_dssp TCEEEEECCCTTTHHHHHHHHTST--TTCCEEEEECTTC----------SCH------HHHHTTCSEEEECSCCTTCBCG
T ss_pred CCEEEEECCCcHHHHHHHHHHhcC--CCCCEEEEEECch----------hHH------HHHHhhCCEEEECCCCCcccCH
Confidence 479999999778899999999875 2 45555433211 011 2234789999999865 3445
Q ss_pred hhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
++. +.|+.|||.+-+ |.++. .+-.+. +..+.
T Consensus 220 ~~v----k~GavVIDVgi~-r~~~g---lvGDVd-~~v~~ 250 (281)
T 2c2x_A 220 DMV----RPGAAVIDVGVS-RTDDG---LVGDVH-PDVWE 250 (281)
T ss_dssp GGS----CTTCEEEECCEE-EETTE---EEESBC-GGGGG
T ss_pred HHc----CCCcEEEEccCC-CCCCC---ccCccc-cchhh
Confidence 553 569999999875 44432 567777 66653
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.029 Score=46.19 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=41.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-Ccc-----CCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TED-----SFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~~-----~~~~~DvVf~a~~~~ 112 (376)
+++|.|+|+ |++|+.+++.|.++++ +++++......-+.+...+......+. +++ .+.++|+||.|+|..
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~---~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGK---KVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD 81 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC---CEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC---eEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence 368999999 9999999999998644 555554221110111111111111111 121 135899999999965
Q ss_pred hh
Q 017153 113 IS 114 (376)
Q Consensus 113 ~s 114 (376)
..
T Consensus 82 ~~ 83 (141)
T 3llv_A 82 EF 83 (141)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.011 Score=56.47 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=55.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC---cceEEeecCccC-CCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD---KAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~---~~~~v~~~~~~~-~~~~DvVf~a~~~~~s 114 (376)
..+++|+|+ |..|+..++.|... +| ++-+.+.+++ ..+.+.... ..+.+...+.++ +.++|+||+|++....
T Consensus 121 ~~~v~iIGa-G~~a~~~~~al~~~-~~-~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~p 196 (313)
T 3hdj_A 121 SSVLGLFGA-GTQGAEHAAQLSAR-FA-LEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTP 196 (313)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH-SC-CCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSC
T ss_pred CcEEEEECc-cHHHHHHHHHHHHh-CC-CcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCc
Confidence 479999997 99999999988752 15 4444455655 332222110 012222224332 4689999999998632
Q ss_pred hhhHHHHHhCCCeEEEcCCC
Q 017153 115 KKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS~~ 134 (376)
-+....++.|..|+|.++.
T Consensus 197 -vl~~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 197 -LFAGQALRAGAFVGAIGSS 215 (313)
T ss_dssp -SSCGGGCCTTCEEEECCCS
T ss_pred -ccCHHHcCCCcEEEECCCC
Confidence 1112345679999999876
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.12 Score=48.97 Aligned_cols=95 Identities=17% Similarity=0.309 Sum_probs=62.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCc--hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~--~s~~ 116 (376)
..++.|+|++|.+|+-+.++|.+. +.++....+ +.. ++.. .+....+|+||.|+|.. +..+
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~---gAtVtv~~~-~T~---------~l~l----~~~~~~ADIVI~Avg~p~~I~~~ 227 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKE---NATVTIVHS-GTS---------TEDM----IDYLRTADIVIAAMGQPGYVKGE 227 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT---TCEEEEECT-TSC---------HHHH----HHHHHTCSEEEECSCCTTCBCGG
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCeEEEEeC-CCC---------Cchh----hhhhccCCEEEECCCCCCCCcHH
Confidence 479999999889999999999885 456554433 111 1100 02346889999999753 3444
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCC-c---EEeeccCHHhhcC
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENV-P---LVIPEVNPEAMSG 155 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~-~---~~lpevN~~~i~~ 155 (376)
+ .+.|+.|||.+.+ |.++.. + -.+-.++.+..+.
T Consensus 228 ~----vk~GavVIDvgi~-~~~~~~~~~g~kl~GDVdf~~v~~ 265 (300)
T 4a26_A 228 W----IKEGAAVVDVGTT-PVPDPSRKDGYRLVGDVCFEEAAA 265 (300)
T ss_dssp G----SCTTCEEEECCCE-EESCSCSTTSCEEECSBCHHHHTT
T ss_pred h----cCCCcEEEEEecc-CCcCCcccCCceeecCccHHHHHh
Confidence 4 4679999999876 433321 1 3566788777764
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.054 Score=54.35 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=57.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee--cCcceEEe--ecCccCCCCCcEEEEcCCCc-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTVE--ELTEDSFDGVDIALFSAGGS-I 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~--~~~~~~v~--~~~~~~~~~~DvVf~a~~~~-~ 113 (376)
.++|.|+|+ |.+|...++.|.+. ..++.++..... ..+.. ....+.+. .+.++++.++|+||.|++.. .
T Consensus 12 ~~~vlVvGg-G~va~~k~~~L~~~---ga~V~vi~~~~~--~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~~ 85 (457)
T 1pjq_A 12 DRDCLIVGG-GDVAERKARLLLEA---GARLTVNALTFI--PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTV 85 (457)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TBEEEEEESSCC--HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC---cCEEEEEcCCCC--HHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHHH
Confidence 489999999 99999999999885 456666653211 11111 00123332 34456678999999999887 4
Q ss_pred hhhhHHHHHhCCCeE
Q 017153 114 SKKFGPIAVEKGSIV 128 (376)
Q Consensus 114 s~~~~~~~~~~G~~V 128 (376)
.......+.+.|+.|
T Consensus 86 n~~i~~~a~~~~i~v 100 (457)
T 1pjq_A 86 NQRVSDAAESRRIFC 100 (457)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCEE
Confidence 677777778889887
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.037 Score=53.10 Aligned_cols=68 Identities=16% Similarity=0.365 Sum_probs=41.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---Cc--eeeec----CcceEEee-cCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GK--QLSFQ----DKAYTVEE-LTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---g~--~~~~~----~~~~~v~~-~~~~~~~~~DvVf~a 108 (376)
++||+|+|| |.+|..+...|...++ ++++ +.+.+.. +. .+... .....+.. .+.+.+.++|+||.|
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~--~~V~-L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~VI~a 89 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDL--GDVY-MFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIIT 89 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--CEEE-EECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--CeEE-EEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHCCCCEEEEc
Confidence 479999999 9999999999988733 3544 4433221 10 00000 01122332 345567899999999
Q ss_pred CC
Q 017153 109 AG 110 (376)
Q Consensus 109 ~~ 110 (376)
.+
T Consensus 90 vg 91 (328)
T 2hjr_A 90 AG 91 (328)
T ss_dssp CS
T ss_pred CC
Confidence 84
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.05 Score=51.29 Aligned_cols=91 Identities=21% Similarity=0.337 Sum_probs=61.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~~ 116 (376)
..++.|+|++|.+|+-+..+|.+. +.++....++ . .++ .+....+|+||.|+|. .+..+
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~---gAtVtv~h~~-t---------~~L------~~~~~~ADIVI~Avg~p~~I~~~ 220 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNA---GATVSVCHIK-T---------KDL------SLYTRQADLIIVAAGCVNLLRSD 220 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT---TCEEEEECTT-C---------SCH------HHHHTTCSEEEECSSCTTCBCGG
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCeEEEEeCC-c---------hhH------HHHhhcCCEEEECCCCCCcCCHH
Confidence 489999999899999999999875 4565544321 1 011 1234689999999875 33444
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
| .+.|+.|||.+.+ |.+++ -.+-.++.+..+.
T Consensus 221 ~----vk~GavVIDVgi~-~~~~g--kl~GDVdf~~v~~ 252 (285)
T 3p2o_A 221 M----VKEGVIVVDVGIN-RLESG--KIVGDVDFEEVSK 252 (285)
T ss_dssp G----SCTTEEEEECCCE-ECTTS--CEECSBCHHHHTT
T ss_pred H----cCCCeEEEEeccC-cccCC--CEeccccHHHHHh
Confidence 4 3679999999875 44332 3456677666653
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.064 Score=50.72 Aligned_cols=136 Identities=11% Similarity=0.081 Sum_probs=73.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cceeee-c---CcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF-Q---DKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~~-~---~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
-+||+|+|+ |..|..+.+.|+ .++ ++.+. +++.. .+.... . ...+... .+++++.++|+||.|+|..
T Consensus 12 ~~~V~vIG~-G~MG~~iA~~la-aG~---~V~v~-d~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~~~~aDlVieavpe~ 84 (293)
T 1zej_A 12 HMKVFVIGA-GLMGRGIAIAIA-SKH---EVVLQ-DVSEKALEAAREQIPEELLSKIEFT-TTLEKVKDCDIVMEAVFED 84 (293)
T ss_dssp CCEEEEECC-SHHHHHHHHHHH-TTS---EEEEE-CSCHHHHHHHHHHSCGGGGGGEEEE-SSCTTGGGCSEEEECCCSC
T ss_pred CCeEEEEee-CHHHHHHHHHHH-cCC---EEEEE-ECCHHHHHHHHHHHHHHHhCCeEEe-CCHHHHcCCCEEEEcCcCC
Confidence 479999998 999999999998 854 55544 22211 000000 0 0023332 2334477999999999998
Q ss_pred hhh--hhHHHHHh-CCCeEEEcCCCCCCC---C--CC---cEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHh
Q 017153 113 ISK--KFGPIAVE-KGSIVVDNSSAFRMV---E--NV---PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAAT 181 (376)
Q Consensus 113 ~s~--~~~~~~~~-~G~~VIDlS~~~R~~---~--~~---~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~ 181 (376)
... .+..++.. .|+.++++++..-.. . .. ..++=-+|+..... -..++..+.+... ..-.+.
T Consensus 85 ~~vk~~l~~~l~~~~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~------lveiv~g~~t~~~-~~~~~~ 157 (293)
T 1zej_A 85 LNTKVEVLREVERLTNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMP------LVEIVISRFTDSK-TVAFVE 157 (293)
T ss_dssp HHHHHHHHHHHHTTCCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCC------EEEEEECTTCCHH-HHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCC------EEEEECCCCCCHH-HHHHHH
Confidence 752 23223322 688887777665321 1 01 13444445332211 1234544434433 344567
Q ss_pred HHHHhCC
Q 017153 182 PLHRRAK 188 (376)
Q Consensus 182 pL~~~~~ 188 (376)
++.+..+
T Consensus 158 ~l~~~lG 164 (293)
T 1zej_A 158 GFLRELG 164 (293)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 7777755
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.044 Score=52.60 Aligned_cols=86 Identities=8% Similarity=0.105 Sum_probs=50.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|..- .+++.+........... .-.+...+.++ +.++|+|++|+|.+. +..
T Consensus 137 gktvGIiGl-G~IG~~vA~~l~~~---G~~V~~~dr~~~~~~~~-----~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~ 207 (324)
T 3evt_A 137 GQQLLIYGT-GQIGQSLAAKASAL---GMHVIGVNTTGHPADHF-----HETVAFTATADALATANFIVNALPLTPTTHH 207 (324)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEESSCCCCTTC-----SEEEEGGGCHHHHHHCSEEEECCCCCGGGTT
T ss_pred CCeEEEECc-CHHHHHHHHHHHhC---CCEEEEECCCcchhHhH-----hhccccCCHHHHHhhCCEEEEcCCCchHHHH
Confidence 379999998 99999999999874 45776554221111111 01111112222 468999999999643 222
Q ss_pred hH--HHH--HhCCCeEEEcCC
Q 017153 117 FG--PIA--VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~~~--~~~G~~VIDlS~ 133 (376)
.. ..+ .+.|+.+||.|.
T Consensus 208 li~~~~l~~mk~gailIN~aR 228 (324)
T 3evt_A 208 LFSTELFQQTKQQPMLINIGR 228 (324)
T ss_dssp CBSHHHHHTCCSCCEEEECSC
T ss_pred hcCHHHHhcCCCCCEEEEcCC
Confidence 22 122 246788887663
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.012 Score=55.94 Aligned_cols=90 Identities=8% Similarity=0.097 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec-CcceEEeecCc-cCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~-~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~ 115 (376)
.++|+|+|+ |..|+.+++.|... ..++.+.+.+++.. .+.+... +..+.... +. +.+.++|+||+|+|...
T Consensus 135 ~~~igiIG~-G~~g~~~a~~l~~~--~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~-~~~e~v~~aDiVi~atp~~~-- 208 (312)
T 2i99_A 135 SEVLCILGA-GVQAYSHYEIFTEQ--FSFKEVRIWNRTKENAEKFADTVQGEVRVCS-SVQEAVAGADVIITVTLATE-- 208 (312)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH--CCCSEEEEECSSHHHHHHHHHHSSSCCEECS-SHHHHHTTCSEEEECCCCSS--
T ss_pred CcEEEEECC-cHHHHHHHHHHHHh--CCCcEEEEEcCCHHHHHHHHHHhhCCeEEeC-CHHHHHhcCCEEEEEeCCCC--
Confidence 579999998 99999999988754 22322334444321 1111111 10122211 22 23468999999999642
Q ss_pred hhHH-HHHhCCCeEEEcCCC
Q 017153 116 KFGP-IAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 ~~~~-~~~~~G~~VIDlS~~ 134 (376)
.... ..++.|..|+|.++.
T Consensus 209 ~v~~~~~l~~g~~vi~~g~~ 228 (312)
T 2i99_A 209 PILFGEWVKPGAHINAVGAS 228 (312)
T ss_dssp CCBCGGGSCTTCEEEECCCC
T ss_pred cccCHHHcCCCcEEEeCCCC
Confidence 2222 345678999998654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.044 Score=52.22 Aligned_cols=71 Identities=20% Similarity=0.374 Sum_probs=43.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---Cc--eeee----cCcceEEeecCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GK--QLSF----QDKAYTVEELTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---g~--~~~~----~~~~~~v~~~~~~~~~~~DvVf~a~ 109 (376)
++||+|+|+ |.+|..++..|...+. .-+++.+- .+.. |. .+.. ...+..+..-+.+++.++|+||.|.
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~-~~ev~l~D-i~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~ 82 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGI-ADEIVLID-ANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICA 82 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEEC-SSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECC
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEe-CCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcC
Confidence 579999999 9999999988876521 23566543 2211 11 0000 0113344432345688999999997
Q ss_pred CCc
Q 017153 110 GGS 112 (376)
Q Consensus 110 ~~~ 112 (376)
|..
T Consensus 83 ~~~ 85 (316)
T 1ldn_A 83 GAN 85 (316)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.15 Score=47.37 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.|.||||++|+.+++.|.+++ .+++++.
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~ 31 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARG---LEVAVLD 31 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTT---CEEEEEC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 589999999999999999998864 3666553
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.15 Score=47.68 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=61.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~~ 116 (376)
..++.|+|+++.+|+-+.++|.+. +.++....++. .++ .+....+|+||.|+|. .+..+
T Consensus 150 Gk~vvVvG~s~iVG~plA~lL~~~---gAtVtv~~~~t----------~~L------~~~~~~ADIVI~Avg~p~~I~~~ 210 (276)
T 3ngx_A 150 ENTVTIVNRSPVVGRPLSMMLLNR---NYTVSVCHSKT----------KDI------GSMTRSSKIVVVAVGRPGFLNRE 210 (276)
T ss_dssp SCEEEEECCCTTTHHHHHHHHHHT---TCEEEEECTTC----------SCH------HHHHHHSSEEEECSSCTTCBCGG
T ss_pred CCEEEEEcCChHHHHHHHHHHHHC---CCeEEEEeCCc----------ccH------HHhhccCCEEEECCCCCccccHh
Confidence 489999999889999999999875 45655443311 011 1224578999999875 34444
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
+ .+.|+.|||.+.+. .++ -.+-.++.+..+.
T Consensus 211 ~----vk~GavVIDvgi~~--~~g--kl~GDVdf~~v~~ 241 (276)
T 3ngx_A 211 M----VTPGSVVIDVGINY--VND--KVVGDANFEDLSE 241 (276)
T ss_dssp G----CCTTCEEEECCCEE--ETT--EEECSBCHHHHHT
T ss_pred h----ccCCcEEEEeccCc--cCC--ceeccccHHHHhh
Confidence 4 36799999998764 222 3566777777663
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.075 Score=53.51 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|.|.||||++|+.|++.|.+. ..++.++.
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~---g~~V~~l~ 181 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGY---SHRIYCFI 181 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTT---EEEEEEEE
T ss_pred CCeEEEECCccchHHHHHHHHHhc---CCEEEEEE
Confidence 479999999999999999999653 56777665
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.075 Score=50.12 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=42.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCcee--eecC---cceEEee-cCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQL--SFQD---KAYTVEE-LTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~--~~~~---~~~~v~~-~~~~~~~~~DvVf~a~ 109 (376)
+|||+|+|+ |.+|..+...|...++ .-++.++. ++. .+..+ .... ....+.. .+.+.+.++|+||.|+
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~-~~~V~l~d-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v 83 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLED-IAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITA 83 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEEC-SSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEe-CChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECC
Confidence 479999999 9999999998887632 11665443 221 11111 1110 1223332 2345578999999999
Q ss_pred CCc
Q 017153 110 GGS 112 (376)
Q Consensus 110 ~~~ 112 (376)
+..
T Consensus 84 ~~~ 86 (319)
T 1lld_A 84 GPR 86 (319)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.05 Score=52.10 Aligned_cols=70 Identities=16% Similarity=0.332 Sum_probs=43.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCc--eeeec----CcceEEe-ecCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGK--QLSFQ----DKAYTVE-ELTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~--~~~~~----~~~~~v~-~~~~~~~~~~DvVf~a~ 109 (376)
.+||+|+|+ |.+|..++..|..+++ .+++.+-.... .|. .+... .....+. ..+.+++.++|+||.+.
T Consensus 5 ~~kI~iiGa-G~vG~~~a~~l~~~~~--~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~a 81 (321)
T 3p7m_A 5 RKKITLVGA-GNIGGTLAHLALIKQL--GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTA 81 (321)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--ceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcC
Confidence 589999997 9999999999887643 27665532221 111 01110 1123343 23456788999999997
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 82 g~ 83 (321)
T 3p7m_A 82 GV 83 (321)
T ss_dssp SC
T ss_pred Cc
Confidence 54
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.11 Score=48.21 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.||||++|+.|++.|.+++ .++.++.
T Consensus 12 ~~~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~ 43 (321)
T 2pk3_A 12 SMRALITGVAGFVGKYLANHLTEQN---VEVFGTS 43 (321)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred cceEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 4899999999999999999998863 3676654
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.033 Score=53.06 Aligned_cols=70 Identities=16% Similarity=0.311 Sum_probs=42.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-C---CCCc--eee----ecCcceEEee-cC--ccCCCCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-R---SAGK--QLS----FQDKAYTVEE-LT--EDSFDGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~---~~g~--~~~----~~~~~~~v~~-~~--~~~~~~~DvVf 106 (376)
|||+|+||+|++|..++..|...++ ..+++++-.+ . ..|. .+. +.+.+..+.. .+ .+.+.++|+||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi 79 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVI 79 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCC-CCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEE
Confidence 5899999999999999998877632 2456655321 1 1110 000 1112334433 22 34578999999
Q ss_pred EcCC
Q 017153 107 FSAG 110 (376)
Q Consensus 107 ~a~~ 110 (376)
.+.+
T Consensus 80 ~~Ag 83 (313)
T 1hye_A 80 ITSG 83 (313)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 9875
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.012 Score=54.48 Aligned_cols=86 Identities=12% Similarity=0.129 Sum_probs=50.6
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccCCCCCcEEEEcCCCchhh---h
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK---K 116 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~---~ 116 (376)
+|+|+|+ |.+|+.+++.|.+.+ . ++. +.+++.. .+.+.... ...+..+ .+. .++|+|+.|+|..... .
T Consensus 118 ~v~iiG~-G~~g~~~a~~l~~~g--~-~v~-v~~r~~~~~~~l~~~~-~~~~~~~-~~~-~~~Divi~~tp~~~~~~~~~ 189 (263)
T 2d5c_A 118 PALVLGA-GGAGRAVAFALREAG--L-EVW-VWNRTPQRALALAEEF-GLRAVPL-EKA-REARLLVNATRVGLEDPSAS 189 (263)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTT--C-CEE-EECSSHHHHHHHHHHH-TCEECCG-GGG-GGCSEEEECSSTTTTCTTCC
T ss_pred eEEEECC-cHHHHHHHHHHHHCC--C-EEE-EEECCHHHHHHHHHHh-ccchhhH-hhc-cCCCEEEEccCCCCCCCCCC
Confidence 8999998 999999999998863 2 544 4444321 11111000 0112221 223 6799999999987532 1
Q ss_pred -hHHHHHhCCCeEEEcCCC
Q 017153 117 -FGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 117 -~~~~~~~~G~~VIDlS~~ 134 (376)
+.....+.|..|||++..
T Consensus 190 ~l~~~~l~~g~~viD~~~~ 208 (263)
T 2d5c_A 190 PLPAELFPEEGAAVDLVYR 208 (263)
T ss_dssp SSCGGGSCSSSEEEESCCS
T ss_pred CCCHHHcCCCCEEEEeecC
Confidence 112334568888887643
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.062 Score=48.75 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=49.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-CccC----CC--CCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TEDS----FD--GVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~~~----~~--~~DvVf~a~~~~ 112 (376)
|||.|.||||++|+.+++.|.+ + .++.++.. +.... . .+. .++ +++. +. ++|+||.|.+..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g---~~V~~~~r-~~~~~----~--~~~-~Dl~~~~~~~~~~~~~~~d~vi~~a~~~ 68 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-R---HEVIKVYN-SSEIQ----G--GYK-LDLTDFPRLEDFIIKKRPDVIINAAAMT 68 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-T---SCEEEEES-SSCCT----T--CEE-CCTTSHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CEEEEECCCChhHHHHHHHHhc-C---CeEEEecC-CCcCC----C--Cce-eccCCHHHHHHHHHhcCCCEEEECCccc
Confidence 4799999999999999999984 3 35555542 22111 0 111 122 1221 23 489999998753
Q ss_pred h------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 113 I------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 113 ~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
. .....+.+.+.|+++|-+|+..
T Consensus 69 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~ 109 (273)
T 2ggs_A 69 DVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDY 109 (273)
T ss_dssp CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred ChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecce
Confidence 2 1223334445677888777754
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.046 Score=55.38 Aligned_cols=142 Identities=11% Similarity=0.145 Sum_probs=76.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cceee----------ecC-----------cceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLS----------FQD-----------KAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~~~~----------~~~-----------~~~~v~~~~ 95 (376)
.+||+|||+ |..|..+...|...++ ++... +++.. .+... ..+ ..+... .+
T Consensus 5 ~~kVgVIGa-G~MG~~IA~~la~aG~---~V~l~-D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~ 78 (483)
T 3mog_A 5 VQTVAVIGS-GTMGAGIAEVAASHGH---QVLLY-DISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TD 78 (483)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTC---CEEEE-CSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCC---eEEEE-ECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CC
Confidence 468999998 9999999999988754 45443 32211 00000 000 012222 23
Q ss_pred ccCCCCCcEEEEcCCCchh--hhhHHHH---HhCCCeEEEcCCCCCCCC---C-----CcEEeeccCHHhhcCcccCCCC
Q 017153 96 EDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMVE---N-----VPLVIPEVNPEAMSGIKVGMGK 162 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s--~~~~~~~---~~~G~~VIDlS~~~R~~~---~-----~~~~lpevN~~~i~~~~~~~~~ 162 (376)
.+.+.++|+||+|++.... .+...++ ...++.++++++..-.+. . ...++--+|+..+.. -
T Consensus 79 ~~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~------L 152 (483)
T 3mog_A 79 IHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMK------L 152 (483)
T ss_dssp GGGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCC------E
T ss_pred HHHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCC------e
Confidence 4457899999999998743 3444443 346788878777764221 1 113444444333221 1
Q ss_pred CcEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 163 GALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 163 ~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
..+|..+.+.... .-.+.+|.+..+-..+.
T Consensus 153 vevv~g~~Ts~e~-~~~~~~l~~~lGk~~v~ 182 (483)
T 3mog_A 153 VEVVSGLATAAEV-VEQLCELTLSWGKQPVR 182 (483)
T ss_dssp EEEEECSSCCHHH-HHHHHHHHHHTTCEEEE
T ss_pred EEEecCCCCCHHH-HHHHHHHHHHhCCEEEE
Confidence 2355554444433 33466777766543333
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.039 Score=51.01 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=24.8
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
||.|.||||++|+.|++.|.+++ ..++.++.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g--~~~V~~~~ 31 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKG--ITDILVVD 31 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTT--CCCEEEEE
T ss_pred CEEEEcCccHHHHHHHHHHHHCC--CcEEEEEc
Confidence 58999999999999999998873 24565554
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.031 Score=52.94 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=43.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CC---CCc--eeee---cCcceEEeecCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RS---AGK--QLSF---QDKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~---~g~--~~~~---~~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
|||+|+||+|++|..++..|...++ ..+++++-.+ .. .+. .+.. ...+..+..-+.+.+.++|+||.+.+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~-~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag 79 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCC
Confidence 5899999889999999998876532 3456654320 11 010 0000 01233444324456789999999976
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 80 ~ 80 (303)
T 1o6z_A 80 I 80 (303)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.11 Score=47.36 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=39.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---ccC----CCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDS----FDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~----~~~~DvVf~a~~~ 111 (376)
++|.|.||||++|+.|++.|.++ ..++.++. ++..... ...+.+...| ++. +.++|+||.+.+.
T Consensus 4 k~vlVTGasg~IG~~la~~L~~~---G~~V~~~~-r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~ 74 (267)
T 3rft_A 4 KRLLVTGAAGQLGRVMRERLAPM---AEILRLAD-LSPLDPA----GPNEECVQCDLADANAVNAMVAGCDGIVHLGGI 74 (267)
T ss_dssp EEEEEESTTSHHHHHHHHHTGGG---EEEEEEEE-SSCCCCC----CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhc---CCEEEEEe-cCCcccc----CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence 67999999999999999999886 34665443 2221111 1122222222 111 3578999988654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.036 Score=53.27 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=43.0
Q ss_pred CCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---C--ceeee----cCcceEEee-cCcc-CCCCC
Q 017153 34 SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---G--KQLSF----QDKAYTVEE-LTED-SFDGV 102 (376)
Q Consensus 34 ~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---g--~~~~~----~~~~~~v~~-~~~~-~~~~~ 102 (376)
.|..+++||+|+|| |.+|..+...|...++ ++++ +.+.+.. + ..+.. ......+.. .+.+ .+.++
T Consensus 4 ~~~~~~~kI~VIGa-G~vG~~lA~~la~~g~--~~V~-L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~a 79 (331)
T 1pzg_A 4 ALVQRRKKVAMIGS-GMIGGTMGYLCALREL--ADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGA 79 (331)
T ss_dssp CCCSCCCEEEEECC-SHHHHHHHHHHHHHTC--CEEE-EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred CcCCCCCEEEEECC-CHHHHHHHHHHHhCCC--CeEE-EEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCC
Confidence 34445689999999 9999999999987633 3544 4433221 1 00000 011122322 2333 57899
Q ss_pred cEEEEcCC
Q 017153 103 DIALFSAG 110 (376)
Q Consensus 103 DvVf~a~~ 110 (376)
|+||.|.+
T Consensus 80 DiVi~a~g 87 (331)
T 1pzg_A 80 DCVIVTAG 87 (331)
T ss_dssp SEEEECCS
T ss_pred CEEEEccC
Confidence 99999983
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.045 Score=44.52 Aligned_cols=69 Identities=12% Similarity=0.229 Sum_probs=38.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-Ccc-----CCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TED-----SFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~~-----~~~~~DvVf~a~~~~ 112 (376)
.+|.|+|+ |.+|+.+++.|...++ ++..+......-+.+...+......+. +++ .+.++|+||.|++..
T Consensus 7 ~~v~I~G~-G~iG~~~a~~l~~~g~---~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 7 KQFAVIGL-GRFGGSIVKELHRMGH---EVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTC---CCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 57999999 9999999999988643 444443211100000000111111111 111 145799999999975
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.01 Score=57.69 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=53.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecC---cceEEeec-Cc-cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQD---KAYTVEEL-TE-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~---~~~~v~~~-~~-~~~~~~DvVf~a~~~~ 112 (376)
..+|+|+|+ |..|+..++.|... ..++.+.+.+++.. .+.+.... ..+.+... +. +.+.++|+|++|++..
T Consensus 129 ~~~v~iIGa-G~~a~~~a~al~~~--~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~ 205 (350)
T 1x7d_A 129 ARKMALIGN-GAQSEFQALAFHKH--LGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK 205 (350)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHH--SCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred CCeEEEECC-cHHHHHHHHHHHHh--CCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC
Confidence 579999998 99999998876532 22333445554321 11111100 02222221 22 2347899999999986
Q ss_pred hhhhhH-HHHHhCCCeEEEcCCC
Q 017153 113 ISKKFG-PIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~~~~-~~~~~~G~~VIDlS~~ 134 (376)
...... ...++.|..|++.++.
T Consensus 206 ~~~pvl~~~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 206 AYATIITPDMLEPGMHLNAVGGD 228 (350)
T ss_dssp SEEEEECGGGCCTTCEEEECSCC
T ss_pred CCCceecHHHcCCCCEEEECCCC
Confidence 322222 2345679999998875
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.05 Score=51.81 Aligned_cols=81 Identities=12% Similarity=0.224 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|+|+|. |.+|+.+.+.|... ..++.+. +++..... ... .+.+ .+.++|+|++|+|... ...
T Consensus 144 g~~vgIIG~-G~IG~~~A~~l~~~---G~~V~~~-d~~~~~~~-------~~~--~~l~ell~~aDvV~l~~p~~~~t~~ 209 (311)
T 2cuk_A 144 GLTLGLVGM-GRIGQAVAKRALAF---GMRVVYH-ARTPKPLP-------YPF--LSLEELLKEADVVSLHTPLTPETHR 209 (311)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEE-CSSCCSSS-------SCB--CCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred CCEEEEEEE-CHHHHHHHHHHHHC---CCEEEEE-CCCCcccc-------ccc--CCHHHHHhhCCEEEEeCCCChHHHh
Confidence 378999998 99999999999875 3466544 33221110 111 1222 2468999999998874 333
Q ss_pred hHH-HH---HhCCCeEEEcCC
Q 017153 117 FGP-IA---VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~~-~~---~~~G~~VIDlS~ 133 (376)
... .. .+.|+.+||.+.
T Consensus 210 li~~~~l~~mk~ga~lin~sr 230 (311)
T 2cuk_A 210 LLNRERLFAMKRGAILLNTAR 230 (311)
T ss_dssp CBCHHHHTTSCTTCEEEECSC
T ss_pred hcCHHHHhhCCCCcEEEECCC
Confidence 221 11 245777777654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.056 Score=44.71 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=48.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-Ccc-----CCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TED-----SFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~~-----~~~~~DvVf~a~~~~ 112 (376)
+.+|.|+|+ |.+|+.+++.|.+.++ +++++......-+.+...+.....-+. +++ .+.++|+|+.|++.+
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~---~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~ 82 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDI---PLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNG 82 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC---CEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCCh
Confidence 478999999 9999999999988644 566554321111111111111111111 121 135789999999986
Q ss_pred hhhh-hHHHHH--hCCCeEEE
Q 017153 113 ISKK-FGPIAV--EKGSIVVD 130 (376)
Q Consensus 113 ~s~~-~~~~~~--~~G~~VID 130 (376)
..-. .+..+. ..+++||-
T Consensus 83 ~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 83 YEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp HHHHHHHHHHHHHCSSSEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEE
Confidence 5432 222222 23556663
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.038 Score=52.23 Aligned_cols=83 Identities=11% Similarity=0.178 Sum_probs=49.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|... .+++.+.. ++..... ..... .+.++ +.++|+|++|+|.+. +..
T Consensus 122 g~tvGIIGl-G~IG~~vA~~l~~~---G~~V~~~d-r~~~~~~------~~~~~-~~l~ell~~aDiV~l~~P~t~~t~~ 189 (290)
T 3gvx_A 122 GKALGILGY-GGIGRRVAHLAKAF---GMRVIAYT-RSSVDQN------VDVIS-ESPADLFRQSDFVLIAIPLTDKTRG 189 (290)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHH---TCEEEEEC-SSCCCTT------CSEEC-SSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred cchheeecc-CchhHHHHHHHHhh---CcEEEEEe-ccccccc------ccccc-CChHHHhhccCeEEEEeeccccchh
Confidence 379999998 99999999999864 45766553 3211100 01111 12222 468999999999533 222
Q ss_pred hH-HHH---HhCCCeEEEcCC
Q 017153 117 FG-PIA---VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS~ 133 (376)
.. ... .+.|+.+||.|.
T Consensus 190 li~~~~l~~mk~gailIN~aR 210 (290)
T 3gvx_A 190 MVNSRLLANARKNLTIVNVAR 210 (290)
T ss_dssp CBSHHHHTTCCTTCEEEECSC
T ss_pred hhhHHHHhhhhcCceEEEeeh
Confidence 22 122 245777777653
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.031 Score=54.22 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=26.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCC------eEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPY------RSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~------~~l~~v~ 73 (376)
...||+|+||+|.||..|+-+|... +- .+|+.+-
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~--~l~~~~~~~eL~L~D 62 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARG--ALLGPTTPVELRLLD 62 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHT--TTTCTTCCEEEEEEC
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhc--cccCCCCccEEEEEC
Confidence 3589999999999999999888765 32 3676553
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.028 Score=53.98 Aligned_cols=86 Identities=10% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-h
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-K 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~ 115 (376)
.++|+|+|+ |.+|+.+.+.|...+ .++.+.. ++... +.... ...... +.++ +.++|+|++|+|.... .
T Consensus 155 g~~vgIIG~-G~iG~~iA~~l~~~G---~~V~~~d-~~~~~~~~~~~--~g~~~~--~l~e~l~~aDvVi~~vp~~~~t~ 225 (330)
T 2gcg_A 155 QSTVGIIGL-GRIGQAIARRLKPFG---VQRFLYT-GRQPRPEEAAE--FQAEFV--STPELAAQSDFIVVACSLTPATE 225 (330)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGT---CCEEEEE-SSSCCHHHHHT--TTCEEC--CHHHHHHHCSEEEECCCCCTTTT
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCC---CEEEEEC-CCCcchhHHHh--cCceeC--CHHHHHhhCCEEEEeCCCChHHH
Confidence 379999998 999999999998753 3555443 22211 11100 112222 3222 4689999999987532 2
Q ss_pred hhH-H---HHHhCCCeEEEcCC
Q 017153 116 KFG-P---IAVEKGSIVVDNSS 133 (376)
Q Consensus 116 ~~~-~---~~~~~G~~VIDlS~ 133 (376)
... . ...+.|+.+|+.|.
T Consensus 226 ~~i~~~~~~~mk~gailIn~sr 247 (330)
T 2gcg_A 226 GLCNKDFFQKMKETAVFINISR 247 (330)
T ss_dssp TCBSHHHHHHSCTTCEEEECSC
T ss_pred HhhCHHHHhcCCCCcEEEECCC
Confidence 221 1 12345666665543
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.1 Score=54.78 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.++|.|.||||++|+.|++.|++++ .+++++.
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G---~~V~~~~ 42 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENG---YDCVVAD 42 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEE
Confidence 35799999999999999999998863 4666654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.065 Score=51.41 Aligned_cols=71 Identities=14% Similarity=0.314 Sum_probs=44.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCce--eee----cCcceEEe-ecCccCCCCCcEEEEc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LSF----QDKAYTVE-ELTEDSFDGVDIALFS 108 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~--~~~----~~~~~~v~-~~~~~~~~~~DvVf~a 108 (376)
+++||+|+|| |.+|..+...|..+++ .+++.+.-... .|.. +.. ......+. ..+.+++.++|+||.|
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~--~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIia 82 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKEL--GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVT 82 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEEC
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEEc
Confidence 3579999999 9999999999988744 27665532211 1110 111 01122343 2345678899999999
Q ss_pred CCC
Q 017153 109 AGG 111 (376)
Q Consensus 109 ~~~ 111 (376)
.+.
T Consensus 83 ag~ 85 (324)
T 3gvi_A 83 AGV 85 (324)
T ss_dssp CSC
T ss_pred cCc
Confidence 763
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.087 Score=49.65 Aligned_cols=90 Identities=19% Similarity=0.307 Sum_probs=59.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~~ 116 (376)
..++.|+|++|.+|+-+..+|.+. +.++....++. .++ .+....+|+||.|+|. .+..+
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~---gAtVtv~hs~T----------~~L------~~~~~~ADIVI~Avg~p~~I~~~ 221 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLG---GCTVTVTHRFT----------RDL------ADHVSRADLVVVAAGKPGLVKGE 221 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHT---TCEEEEECTTC----------SCH------HHHHHTCSEEEECCCCTTCBCGG
T ss_pred CCEEEEECCCchhHHHHHHHHHHC---CCeEEEEeCCC----------cCH------HHHhccCCEEEECCCCCCCCCHH
Confidence 479999999899999999999875 45665443321 011 1224688999999875 33444
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
| .+.|+.|||.+.+ |.+++ -.+-.++.+..+
T Consensus 222 ~----vk~GavVIDvgi~-~~~~g--kl~GDVdf~~v~ 252 (286)
T 4a5o_A 222 W----IKEGAIVIDVGIN-RQADG--RLVGDVEYEVAA 252 (286)
T ss_dssp G----SCTTCEEEECCSC-SSCCC--CSSCSBCHHHHH
T ss_pred H----cCCCeEEEEeccc-ccccC--CcccCccHHHHH
Confidence 4 3679999999876 43322 234455655555
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.13 Score=48.73 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=40.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCcee--eec---CcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQL--SFQ---DKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~--~~~---~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
|||+|+|+ |.+|..++..|...++ .-+++.+..... .|... ... .....+...+.+++.++|+||.|.+..
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~-~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGS-CSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGAN 78 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC---
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence 58999999 9999999998887633 125655432111 11000 000 012233322445678999999998643
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.11 Score=48.96 Aligned_cols=90 Identities=18% Similarity=0.300 Sum_probs=60.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~~ 116 (376)
..++.|+|++|.+|+-+.++|.+. +.++....+ +. .++ .+....+|+||.|+|. .+..+
T Consensus 161 Gk~vvVIG~s~iVG~p~A~lL~~~---gAtVtv~hs-~t---------~~L------~~~~~~ADIVI~Avg~p~~I~~~ 221 (285)
T 3l07_A 161 GAYAVVVGASNVVGKPVSQLLLNA---KATVTTCHR-FT---------TDL------KSHTTKADILIVAVGKPNFITAD 221 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT---TCEEEEECT-TC---------SSH------HHHHTTCSEEEECCCCTTCBCGG
T ss_pred CCEEEEECCCchhHHHHHHHHHHC---CCeEEEEeC-Cc---------hhH------HHhcccCCEEEECCCCCCCCCHH
Confidence 479999999888999999999885 456554432 11 011 1234689999999875 33444
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcC
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~ 155 (376)
+ .+.|+.|||.+.+ |.+ + -.+-.++.+..+.
T Consensus 222 ~----vk~GavVIDvgi~-~~~-g--~l~GDVdf~~v~~ 252 (285)
T 3l07_A 222 M----VKEGAVVIDVGIN-HVD-G--KIVGDVDFAAVKD 252 (285)
T ss_dssp G----SCTTCEEEECCCE-EET-T--EEECSBCHHHHTT
T ss_pred H----cCCCcEEEEeccc-CcC-C--ceecCccHHHHHh
Confidence 4 3679999999865 332 1 3456677676663
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.085 Score=50.07 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=26.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.||||++|+.|++.|.+++ .++.++.
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 40 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYS 40 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC---CeEEEEe
Confidence 4799999999999999999998863 3666654
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.048 Score=51.78 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|... ..++.+. +++.. .. .. ... .+.+ .+.++|+|++|+|... +..
T Consensus 124 g~~vgIIG~-G~IG~~~A~~l~~~---G~~V~~~-dr~~~-~~---~~--~~~--~~l~ell~~aDvV~l~~P~~~~t~~ 190 (303)
T 1qp8_A 124 GEKVAVLGL-GEIGTRVGKILAAL---GAQVRGF-SRTPK-EG---PW--RFT--NSLEEALREARAAVCALPLNKHTRG 190 (303)
T ss_dssp TCEEEEESC-STHHHHHHHHHHHT---TCEEEEE-CSSCC-CS---SS--CCB--SCSHHHHTTCSEEEECCCCSTTTTT
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHC---CCEEEEE-CCCcc-cc---Cc--ccC--CCHHHHHhhCCEEEEeCcCchHHHH
Confidence 479999998 99999999999875 3466544 33222 11 10 111 1222 2478999999999874 333
Q ss_pred hHH-HH---HhCCCeEEEcCC
Q 017153 117 FGP-IA---VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~~-~~---~~~G~~VIDlS~ 133 (376)
... .. .+.|+.+||.|.
T Consensus 191 ~i~~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 191 LVKYQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp CBCHHHHTTSCTTCEEEECSC
T ss_pred HhCHHHHhhCCCCCEEEECCC
Confidence 321 12 245777887764
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.019 Score=54.94 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCc--ceEEeecCc-cCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDK--AYTVEELTE-DSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~--~~~v~~~~~-~~~~~~DvVf~a~~~~~s 114 (376)
..+++|+|+ |..|+..++.|... ..++.+.+.+++.. .+.+..... .+.+...+. +.+ ++|+|+.|||+...
T Consensus 125 ~~~v~iIGa-G~~a~~~~~al~~~--~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~p 200 (322)
T 1omo_A 125 SSVFGFIGC-GTQAYFQLEALRRV--FDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKP 200 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH--SCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSC
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHh--CCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCc
Confidence 579999998 99999999988763 23444556555421 111111000 011221122 346 89999999998542
Q ss_pred hhhHHHHHhCCCeEEEcCCC
Q 017153 115 KKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS~~ 134 (376)
-+....++.|..|+|.++.
T Consensus 201 -v~~~~~l~~G~~V~~ig~~ 219 (322)
T 1omo_A 201 -VVKAEWVEEGTHINAIGAD 219 (322)
T ss_dssp -CBCGGGCCTTCEEEECSCC
T ss_pred -eecHHHcCCCeEEEECCCC
Confidence 1112345679999998664
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.092 Score=50.20 Aligned_cols=68 Identities=22% Similarity=0.374 Sum_probs=41.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC---Cc--eeee----cCcceEEee-cCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GK--QLSF----QDKAYTVEE-LTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~---g~--~~~~----~~~~~~v~~-~~~~~~~~~DvVf~a 108 (376)
++||+|+|| |++|..+...|... ..++++ +.+.+.. |. .+.. ......+.. .+.+++.++|+||.|
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~--g~~~v~-L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQK--NLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVT 79 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TCCEEE-EECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCCeEE-EEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEe
Confidence 479999999 99999999999887 334644 4433211 10 0000 011223332 345568899999999
Q ss_pred CC
Q 017153 109 AG 110 (376)
Q Consensus 109 ~~ 110 (376)
.+
T Consensus 80 ~g 81 (322)
T 1t2d_A 80 AG 81 (322)
T ss_dssp CS
T ss_pred CC
Confidence 84
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.06 Score=50.51 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=54.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-----eee-------------------e--cCcce-EE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----QLS-------------------F--QDKAY-TV 91 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-----~~~-------------------~--~~~~~-~v 91 (376)
.++|.|+|+ |.+|...++.|.+. ..+++++......+- .+. + ....+ .+
T Consensus 13 ~k~VLVVGg-G~va~rka~~Ll~~---Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 88 (274)
T 1kyq_A 13 DKRILLIGG-GEVGLTRLYKLMPT---GCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEY 88 (274)
T ss_dssp TCEEEEEEE-SHHHHHHHHHHGGG---TCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEE
T ss_pred CCEEEEECC-cHHHHHHHHHHHhC---CCEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEE
Confidence 489999999 99999999999986 346665543221110 000 0 00122 33
Q ss_pred e--ecCccCCC------CCcEEEEcCCCc-hhhhhHHHHHhC---CCeE
Q 017153 92 E--ELTEDSFD------GVDIALFSAGGS-ISKKFGPIAVEK---GSIV 128 (376)
Q Consensus 92 ~--~~~~~~~~------~~DvVf~a~~~~-~s~~~~~~~~~~---G~~V 128 (376)
. .++++++. ++|+||.|++.. .....+..+.+. |+.|
T Consensus 89 i~~~~~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~V 137 (274)
T 1kyq_A 89 IRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLV 137 (274)
T ss_dssp ECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEE
T ss_pred EcCCCCHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEE
Confidence 2 33455566 899999999986 566666666666 7666
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.058 Score=52.25 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=50.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|||+|. |.+|+.+.+.|..- .+++.+. +++....... . ..... .+.++ +.++|+|++|+|.+.. ..
T Consensus 173 gktvGIIGl-G~IG~~vA~~l~~~---G~~V~~~-dr~~~~~~~~-~--g~~~~-~~l~ell~~sDvV~l~~Plt~~T~~ 243 (345)
T 4g2n_A 173 GRRLGIFGM-GRIGRAIATRARGF---GLAIHYH-NRTRLSHALE-E--GAIYH-DTLDSLLGASDIFLIAAPGRPELKG 243 (345)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHTT---TCEEEEE-CSSCCCHHHH-T--TCEEC-SSHHHHHHTCSEEEECSCCCGGGTT
T ss_pred CCEEEEEEe-ChhHHHHHHHHHHC---CCEEEEE-CCCCcchhhh-c--CCeEe-CCHHHHHhhCCEEEEecCCCHHHHH
Confidence 379999998 99999999999864 4576654 3322111110 1 12221 12223 4689999999996432 22
Q ss_pred hH--HH--HHhCCCeEEEcC
Q 017153 117 FG--PI--AVEKGSIVVDNS 132 (376)
Q Consensus 117 ~~--~~--~~~~G~~VIDlS 132 (376)
.. .. ..+.|+.+||.+
T Consensus 244 li~~~~l~~mk~gailIN~a 263 (345)
T 4g2n_A 244 FLDHDRIAKIPEGAVVINIS 263 (345)
T ss_dssp CBCHHHHHHSCTTEEEEECS
T ss_pred HhCHHHHhhCCCCcEEEECC
Confidence 21 11 235688888765
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.073 Score=50.86 Aligned_cols=84 Identities=11% Similarity=0.095 Sum_probs=48.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEee-cCcc-CCCCCcEEEEcCCCch-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTED-SFDGVDIALFSAGGSI-SK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~-~~~~-~~~~~DvVf~a~~~~~-s~ 115 (376)
.++|||+|. |.+|+.+.+.|... .+++.+.......-..+ ..... .+.+ .+.++|+|++|+|.+. +.
T Consensus 139 g~tvGIiG~-G~IG~~vA~~l~~~---G~~V~~~dr~~~~~~~~------~~~~~~~~l~ell~~aDiV~l~~Plt~~t~ 208 (315)
T 3pp8_A 139 EFSVGIMGA-GVLGAKVAESLQAW---GFPLRCWSRSRKSWPGV------ESYVGREELRAFLNQTRVLINLLPNTAQTV 208 (315)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTT---TCCEEEEESSCCCCTTC------EEEESHHHHHHHHHTCSEEEECCCCCGGGT
T ss_pred CCEEEEEee-CHHHHHHHHHHHHC---CCEEEEEcCCchhhhhh------hhhcccCCHHHHHhhCCEEEEecCCchhhh
Confidence 478999998 99999999999875 34665543211110000 01111 1122 2468999999999653 33
Q ss_pred hhH-HHH---HhCCCeEEEcC
Q 017153 116 KFG-PIA---VEKGSIVVDNS 132 (376)
Q Consensus 116 ~~~-~~~---~~~G~~VIDlS 132 (376)
... ... .+.|+.+|+.+
T Consensus 209 ~li~~~~l~~mk~gailIN~a 229 (315)
T 3pp8_A 209 GIINSELLDQLPDGAYVLNLA 229 (315)
T ss_dssp TCBSHHHHTTSCTTEEEEECS
T ss_pred hhccHHHHhhCCCCCEEEECC
Confidence 332 222 23567777654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.087 Score=50.16 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=42.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceee----ec---CcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS----FQ---DKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~----~~---~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
|||+|+|+ |.+|..++..|...++ .-++.++. ++.. -+... .. .....+...+.+.+.++|+||.|.+.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~-~~~V~l~D-~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLID-VDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEEC-SSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCeEEEEe-CChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhCCCCEEEEccCC
Confidence 58999999 9999999998877633 12555443 2210 00000 00 00122332244557899999999986
Q ss_pred ch
Q 017153 112 SI 113 (376)
Q Consensus 112 ~~ 113 (376)
..
T Consensus 78 ~~ 79 (319)
T 1a5z_A 78 PQ 79 (319)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.098 Score=43.72 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=43.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-cCcceEEe--ec-Ccc-----CCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVE--EL-TED-----SFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-~~~~~~v~--~~-~~~-----~~~~~DvVf~a 108 (376)
+.+|.|+|+ |.+|+.+++.|.+.++ +++++...... -+.+.. ....+.+. +. +++ .+.++|+|+.|
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~---~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQ---NVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTC---CEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence 478999998 9999999999988643 56555432110 001110 00112221 11 111 25789999999
Q ss_pred CCCchhhh
Q 017153 109 AGGSISKK 116 (376)
Q Consensus 109 ~~~~~s~~ 116 (376)
++.+..-.
T Consensus 79 ~~~d~~n~ 86 (153)
T 1id1_A 79 SDNDADNA 86 (153)
T ss_dssp SSCHHHHH
T ss_pred cCChHHHH
Confidence 98865433
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.12 Score=48.84 Aligned_cols=90 Identities=19% Similarity=0.288 Sum_probs=60.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCc--hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~--~s~~ 116 (376)
..+|.|+|+++.+|+-+.++|.+. +.++....+.. .++ .+....+|+||.|++.- +..+
T Consensus 159 gk~vvVIG~s~iVG~p~A~lL~~~---gAtVtv~hs~t----------~~L------~~~~~~ADIVI~Avg~p~lI~~~ 219 (288)
T 1b0a_A 159 GLNAVVIGASNIVGRPMSMELLLA---GCTTTVTHRFT----------KNL------RHHVENADLLIVAVGKPGFIPGD 219 (288)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTT---TCEEEEECSSC----------SCH------HHHHHHCSEEEECSCCTTCBCTT
T ss_pred CCEEEEECCChHHHHHHHHHHHHC---CCeEEEEeCCc----------hhH------HHHhccCCEEEECCCCcCcCCHH
Confidence 489999999778999999999875 45655443221 011 12235789999998753 3444
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+ .+.|+.|||.+-+ |.+++ -.+-.++.+..+
T Consensus 220 ~----vk~GavVIDVgi~-r~~~g--~l~GDVdf~~v~ 250 (288)
T 1b0a_A 220 W----IKEGAIVIDVGIN-RLENG--KVVGDVVFEDAA 250 (288)
T ss_dssp T----SCTTCEEEECCCE-ECTTS--CEECSBCHHHHH
T ss_pred H----cCCCcEEEEccCC-ccCCC--CccCCcCHHHHh
Confidence 4 3679999999876 44332 245667766665
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.056 Score=52.46 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=50.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCc-hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGS-ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~-~s~~ 116 (376)
.++|||+|. |.+|+.+++.|..- .+++.+. +++......... ...... .+.+ .+.++|+|++|+|.. .+..
T Consensus 164 gktvGIIG~-G~IG~~vA~~l~~~---G~~V~~~-dr~~~~~~~~~~-~g~~~~-~~l~ell~~aDvV~l~~Plt~~t~~ 236 (351)
T 3jtm_A 164 GKTIGTVGA-GRIGKLLLQRLKPF---GCNLLYH-DRLQMAPELEKE-TGAKFV-EDLNEMLPKCDVIVINMPLTEKTRG 236 (351)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGG---CCEEEEE-CSSCCCHHHHHH-HCCEEC-SCHHHHGGGCSEEEECSCCCTTTTT
T ss_pred CCEEeEEEe-CHHHHHHHHHHHHC---CCEEEEe-CCCccCHHHHHh-CCCeEc-CCHHHHHhcCCEEEECCCCCHHHHH
Confidence 379999998 99999999999864 4565544 333211110000 011111 1222 357899999999964 2222
Q ss_pred hH--H--HHHhCCCeEEEcCC
Q 017153 117 FG--P--IAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~--~~~~~G~~VIDlS~ 133 (376)
.. . ...+.|+.+||.+.
T Consensus 237 li~~~~l~~mk~gailIN~aR 257 (351)
T 3jtm_A 237 MFNKELIGKLKKGVLIVNNAR 257 (351)
T ss_dssp CBSHHHHHHSCTTEEEEECSC
T ss_pred hhcHHHHhcCCCCCEEEECcC
Confidence 21 1 12356788887653
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.28 Score=49.12 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=62.4
Q ss_pred CCEEEEECccc---HHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTG---AVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG---~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
+.+|+|+|+|+ ..|..+++.|.++ ....+..+.. + +..+ ..++++. +..++ ..+|+++.|+|....
T Consensus 8 p~siAVvGas~~~~~~g~~v~~~l~~~--g~~~v~pVnP-~--~~~i----~G~~~y~-sl~~lp~~~Dlavi~vp~~~~ 77 (457)
T 2csu_A 8 PKGIAVIGASNDPKKLGYEVFKNLKEY--KKGKVYPVNI-K--EEEV----QGVKAYK-SVKDIPDEIDLAIIVVPKRFV 77 (457)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTC--CSSEEEEECS-S--CSEE----TTEECBS-STTSCSSCCSEEEECSCHHHH
T ss_pred CCeEEEECcCCCCCchHHHHHHHHHHc--CCCEEEEECC-C--CCeE----CCEeccC-CHHHcCCCCCEEEEecCHHHH
Confidence 47899999984 6799999999876 3455655543 3 2222 1234432 12233 478999999999999
Q ss_pred hhhHHHHHhCCCe-EEEcCCCCC
Q 017153 115 KKFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 115 ~~~~~~~~~~G~~-VIDlS~~~R 136 (376)
.+.+.++.++|++ +|-+++.|.
T Consensus 78 ~~~v~e~~~~Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 78 KDTLIQCGEKGVKGVVIITAGFG 100 (457)
T ss_dssp HHHHHHHHHHTCCEEEECCCSST
T ss_pred HHHHHHHHHcCCCEEEEecCCCC
Confidence 9999999999998 566777763
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.031 Score=51.75 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=50.7
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecC-c-cCCCCCcEEEEcCCCchhh--
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT-E-DSFDGVDIALFSAGGSISK-- 115 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~-~-~~~~~~DvVf~a~~~~~s~-- 115 (376)
+|.|+|+ |-+|+.++..|...+. -++.. .+++. ..+.+.. .+.....+ . +.+.++|+||.|+|.+...
T Consensus 110 ~vliiGa-Gg~a~ai~~~L~~~G~--~~I~v-~nR~~~ka~~la~---~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~ 182 (253)
T 3u62_A 110 PVVVVGA-GGAARAVIYALLQMGV--KDIWV-VNRTIERAKALDF---PVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEE 182 (253)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTC--CCEEE-EESCHHHHHTCCS---SCEEEEGGGHHHHHHTCSEEEECSSTTTTSCC
T ss_pred eEEEECc-HHHHHHHHHHHHHcCC--CEEEE-EeCCHHHHHHHHH---HcccCCHHHHHhhhcCCCEEEECCCCCCCCCC
Confidence 8999998 9999999999988632 24443 33331 1111111 11111111 1 2245799999999876432
Q ss_pred -hhHHHHHhCCCeEEEcCCC
Q 017153 116 -KFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 116 -~~~~~~~~~G~~VIDlS~~ 134 (376)
......+..+..|+|+...
T Consensus 183 ~~i~~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 183 LPVSDDSLKNLSLVYDVIYF 202 (253)
T ss_dssp CSCCHHHHTTCSEEEECSSS
T ss_pred CCCCHHHhCcCCEEEEeeCC
Confidence 2223445677888887654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.062 Score=51.64 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=51.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|+|+|+ |.+|+.+.+.|... ..++.+. +++......... .+... +.++ +.++|+|++|+|... ...
T Consensus 150 g~~vgIIG~-G~iG~~iA~~l~~~---G~~V~~~-d~~~~~~~~~~~--g~~~~--~l~~~l~~aDvVil~vp~~~~t~~ 220 (334)
T 2dbq_A 150 GKTIGIIGL-GRIGQAIAKRAKGF---NMRILYY-SRTRKEEVEREL--NAEFK--PLEDLLRESDFVVLAVPLTRETYH 220 (334)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEE-CSSCCHHHHHHH--CCEEC--CHHHHHHHCSEEEECCCCCTTTTT
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhC---CCEEEEE-CCCcchhhHhhc--CcccC--CHHHHHhhCCEEEECCCCChHHHH
Confidence 378999998 99999999999875 3466544 332211111000 12221 2222 468999999998876 222
Q ss_pred hH----HHHHhCCCeEEEcC
Q 017153 117 FG----PIAVEKGSIVVDNS 132 (376)
Q Consensus 117 ~~----~~~~~~G~~VIDlS 132 (376)
.. -...+.|..+|+.|
T Consensus 221 ~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 221 LINEERLKLMKKTAILINIA 240 (334)
T ss_dssp CBCHHHHHHSCTTCEEEECS
T ss_pred hhCHHHHhcCCCCcEEEECC
Confidence 22 12235688888776
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.048 Score=52.01 Aligned_cols=86 Identities=12% Similarity=0.124 Sum_probs=51.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|+|+|. |.+|+.+.+.|... ..++.+.. ++.. +..... ...... +.++ +.++|+|++|+|... ...
T Consensus 142 g~~vgIIG~-G~IG~~~A~~l~~~---G~~V~~~d-~~~~-~~~~~~-~g~~~~--~l~ell~~aDvVvl~~P~~~~t~~ 212 (313)
T 2ekl_A 142 GKTIGIVGF-GRIGTKVGIIANAM---GMKVLAYD-ILDI-REKAEK-INAKAV--SLEELLKNSDVISLHVTVSKDAKP 212 (313)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHT---TCEEEEEC-SSCC-HHHHHH-TTCEEC--CHHHHHHHCSEEEECCCCCTTSCC
T ss_pred CCEEEEEee-CHHHHHHHHHHHHC---CCEEEEEC-CCcc-hhHHHh-cCceec--CHHHHHhhCCEEEEeccCChHHHH
Confidence 479999998 99999999999875 35665443 3221 111000 012221 3323 468999999999754 221
Q ss_pred hH-H---HHHhCCCeEEEcCC
Q 017153 117 FG-P---IAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~-~---~~~~~G~~VIDlS~ 133 (376)
.. . ...+.|+.+||.+.
T Consensus 213 li~~~~l~~mk~ga~lIn~ar 233 (313)
T 2ekl_A 213 IIDYPQFELMKDNVIIVNTSR 233 (313)
T ss_dssp SBCHHHHHHSCTTEEEEESSC
T ss_pred hhCHHHHhcCCCCCEEEECCC
Confidence 11 1 22356788887764
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.026 Score=57.78 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=53.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCc-hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGS-ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~-~s~~ 116 (376)
.++|+|+|. |.+|+.+.+.|... ..++.+. +++.. ...... ...... +.++ +.++|+|++|+|.. ....
T Consensus 142 g~~vgIIG~-G~IG~~vA~~l~~~---G~~V~~~-d~~~~-~~~a~~-~g~~~~--~l~e~~~~aDvV~l~~P~~~~t~~ 212 (529)
T 1ygy_A 142 GKTVGVVGL-GRIGQLVAQRIAAF---GAYVVAY-DPYVS-PARAAQ-LGIELL--SLDDLLARADFISVHLPKTPETAG 212 (529)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEE-CTTSC-HHHHHH-HTCEEC--CHHHHHHHCSEEEECCCCSTTTTT
T ss_pred CCEEEEEee-CHHHHHHHHHHHhC---CCEEEEE-CCCCC-hhHHHh-cCcEEc--CHHHHHhcCCEEEECCCCchHHHH
Confidence 479999998 99999999999875 3466544 33321 110000 012221 3322 46899999999987 5555
Q ss_pred hHHH-H---HhCCCeEEEcC
Q 017153 117 FGPI-A---VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~~~-~---~~~G~~VIDlS 132 (376)
...+ . .+.|+.+||.+
T Consensus 213 ~i~~~~~~~~k~g~ilin~a 232 (529)
T 1ygy_A 213 LIDKEALAKTKPGVIIVNAA 232 (529)
T ss_dssp CBCHHHHTTSCTTEEEEECS
T ss_pred HhCHHHHhCCCCCCEEEECC
Confidence 5432 2 34688999987
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.066 Score=51.41 Aligned_cols=85 Identities=8% Similarity=0.090 Sum_probs=48.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|||+|. |.+|+.+.+.|... .+++.+.. ++.. ..... .-.....+.++ +.++|+|++|+|.... ..
T Consensus 140 g~tvGIIGl-G~IG~~vA~~l~~~---G~~V~~~d-r~~~--~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~ 210 (324)
T 3hg7_A 140 GRTLLILGT-GSIGQHIAHTGKHF---GMKVLGVS-RSGR--ERAGF--DQVYQLPALNKMLAQADVIVSVLPATRETHH 210 (324)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-SSCC--CCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSSSTT
T ss_pred cceEEEEEE-CHHHHHHHHHHHhC---CCEEEEEc-CChH--Hhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence 479999998 99999999999874 45766543 2211 10000 01111112222 4689999999996432 21
Q ss_pred hH--HH--HHhCCCeEEEcC
Q 017153 117 FG--PI--AVEKGSIVVDNS 132 (376)
Q Consensus 117 ~~--~~--~~~~G~~VIDlS 132 (376)
.. .. ..+.|+.+||.+
T Consensus 211 li~~~~l~~mk~gailIN~a 230 (324)
T 3hg7_A 211 LFTASRFEHCKPGAILFNVG 230 (324)
T ss_dssp SBCTTTTTCSCTTCEEEECS
T ss_pred HhHHHHHhcCCCCcEEEECC
Confidence 11 11 123566677655
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.066 Score=50.38 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=51.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK- 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~- 116 (376)
..++.|+|+ |-+|+.++..|.+. ..-++..+ +|+. ..+.+........+.+++ + + ++|+||.|+|.+....
T Consensus 122 ~k~vlvlGa-GGaaraia~~L~~~--G~~~v~v~-nRt~~ka~~La~~~~~~~~~~l~-~-l-~~DivInaTp~Gm~~~~ 194 (282)
T 3fbt_A 122 NNICVVLGS-GGAARAVLQYLKDN--FAKDIYVV-TRNPEKTSEIYGEFKVISYDELS-N-L-KGDVIINCTPKGMYPKE 194 (282)
T ss_dssp TSEEEEECS-STTHHHHHHHHHHT--TCSEEEEE-ESCHHHHHHHCTTSEEEEHHHHT-T-C-CCSEEEECSSTTSTTST
T ss_pred CCEEEEECC-cHHHHHHHHHHHHc--CCCEEEEE-eCCHHHHHHHHHhcCcccHHHHH-h-c-cCCEEEECCccCccCCC
Confidence 479999998 88899999999886 32355544 3331 111111111111112222 2 4 8999999998865432
Q ss_pred ----hHHHHHhCCCeEEEcCC
Q 017153 117 ----FGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ----~~~~~~~~G~~VIDlS~ 133 (376)
+....+..+..|+|+--
T Consensus 195 ~~~pi~~~~l~~~~~v~DlvY 215 (282)
T 3fbt_A 195 GESPVDKEVVAKFSSAVDLIY 215 (282)
T ss_dssp TCCSSCHHHHTTCSEEEESCC
T ss_pred ccCCCCHHHcCCCCEEEEEee
Confidence 23445667778888653
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.077 Score=50.69 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=42.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC--CCce--eee----cCcceEEe-ecCccCCCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQ--LSF----QDKAYTVE-ELTEDSFDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~--~g~~--~~~----~~~~~~v~-~~~~~~~~~~DvVf~a~ 109 (376)
|||+|+|+ |.+|..++..|..+ +.+ +++.+--... .|.. +.. ...+..+. .-+.+++.++|+||.|.
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~a 77 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQ--DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITA 77 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhC--CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECC
Confidence 68999998 99999999988876 333 6655432211 1111 111 01123343 23456689999999998
Q ss_pred CCc
Q 017153 110 GGS 112 (376)
Q Consensus 110 ~~~ 112 (376)
|..
T Consensus 78 g~~ 80 (314)
T 3nep_X 78 GLP 80 (314)
T ss_dssp CC-
T ss_pred CCC
Confidence 753
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.32 Score=46.06 Aligned_cols=93 Identities=18% Similarity=0.302 Sum_probs=59.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~~ 116 (376)
..+|.|+|+++.+|+-+.++|.+. +.++....+.. .++ .+....+|+||.|++. .+..+
T Consensus 165 gk~vvVIG~s~iVG~p~A~lL~~~---gAtVtv~hs~t----------~~L------~~~~~~ADIVI~Avg~p~~I~~~ 225 (301)
T 1a4i_A 165 GRHAVVVGRSKIVGAPMHDLLLWN---NATVTTCHSKT----------AHL------DEEVNKGDILVVATGQPEMVKGE 225 (301)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT---TCEEEEECTTC----------SSH------HHHHTTCSEEEECCCCTTCBCGG
T ss_pred CCEEEEECCCchHHHHHHHHHHhC---CCeEEEEECCc----------ccH------HHHhccCCEEEECCCCcccCCHH
Confidence 489999999778999999999885 45555443211 011 2234789999999866 34445
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCC----CcEEeeccCHHhhcC
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMSG 155 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~----~~~~lpevN~~~i~~ 155 (376)
+ .+.|+.|||.+-+. .++. -.-.+-.++.+..+.
T Consensus 226 ~----vk~GavVIDVgi~~-~~d~~~~~g~klvGDVdf~~v~~ 263 (301)
T 1a4i_A 226 W----IKPGAIVIDCGINY-VPDDKKPNGRKVVGDVAYDEAKE 263 (301)
T ss_dssp G----SCTTCEEEECCCBC-----------CCBCSBCHHHHTT
T ss_pred H----cCCCcEEEEccCCC-cccccccCCCeeeccccHHHhhh
Confidence 5 35799999999863 3221 001346677676663
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.071 Score=50.66 Aligned_cols=86 Identities=10% Similarity=0.132 Sum_probs=50.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|+|+|. |.+|+.+.+.|... ..++.+.. ++......... ..... +.++ +.++|+|++|+|.... ..
T Consensus 142 g~~vgIiG~-G~IG~~~A~~l~~~---G~~V~~~d-~~~~~~~~~~~--g~~~~--~l~ell~~aDvV~l~~p~~~~t~~ 212 (307)
T 1wwk_A 142 GKTIGIIGF-GRIGYQVAKIANAL---GMNILLYD-PYPNEERAKEV--NGKFV--DLETLLKESDVVTIHVPLVESTYH 212 (307)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-SSCCHHHHHHT--TCEEC--CHHHHHHHCSEEEECCCCSTTTTT
T ss_pred CceEEEEcc-CHHHHHHHHHHHHC---CCEEEEEC-CCCChhhHhhc--Ccccc--CHHHHHhhCCEEEEecCCChHHhh
Confidence 379999998 99999999999875 35665443 32211110001 12221 2322 4689999999997542 22
Q ss_pred hH--H--HHHhCCCeEEEcCC
Q 017153 117 FG--P--IAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~--~~~~~G~~VIDlS~ 133 (376)
.. . ...+.|+.+||.+.
T Consensus 213 li~~~~l~~mk~ga~lin~ar 233 (307)
T 1wwk_A 213 LINEERLKLMKKTAILINTSR 233 (307)
T ss_dssp CBCHHHHHHSCTTCEEEECSC
T ss_pred hcCHHHHhcCCCCeEEEECCC
Confidence 21 1 22356788887654
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=93.28 E-value=0.038 Score=53.50 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=50.9
Q ss_pred CCEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~ 115 (376)
.++|||+|. |.+|+.+.+.|. .. ..++.+. +++........ ....... .+.++ +.++|+|++|+|... ..
T Consensus 163 g~~vgIIG~-G~IG~~vA~~l~~~~---G~~V~~~-d~~~~~~~~~~-~~g~~~~-~~l~ell~~aDvVil~vp~~~~t~ 235 (348)
T 2w2k_A 163 GHVLGAVGL-GAIQKEIARKAVHGL---GMKLVYY-DVAPADAETEK-ALGAERV-DSLEELARRSDCVSVSVPYMKLTH 235 (348)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CCEEEEE-CSSCCCHHHHH-HHTCEEC-SSHHHHHHHCSEEEECCCCSGGGT
T ss_pred CCEEEEEEE-CHHHHHHHHHHHHhc---CCEEEEE-CCCCcchhhHh-hcCcEEe-CCHHHHhccCCEEEEeCCCChHHH
Confidence 378999998 999999999998 65 3466543 33321111000 0012222 12222 468999999999864 22
Q ss_pred hhH--H--HHHhCCCeEEEcCC
Q 017153 116 KFG--P--IAVEKGSIVVDNSS 133 (376)
Q Consensus 116 ~~~--~--~~~~~G~~VIDlS~ 133 (376)
... . ...+.|+.+||.|.
T Consensus 236 ~li~~~~l~~mk~gailin~sr 257 (348)
T 2w2k_A 236 HLIDEAFFAAMKPGSRIVNTAR 257 (348)
T ss_dssp TCBCHHHHHHSCTTEEEEECSC
T ss_pred HHhhHHHHhcCCCCCEEEECCC
Confidence 222 1 22356777887654
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.24 Score=52.64 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=56.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC----Cce---------eeec----------CcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA----GKQ---------LSFQ----------DKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~----g~~---------~~~~----------~~~~~v~~~~ 95 (376)
.+||+|||+ |.+|..+...|...+| ++... +++.. ++. +..+ ...+... .+
T Consensus 312 ~~kV~VIGa-G~MG~~iA~~la~aG~---~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d 385 (725)
T 2wtb_A 312 IKKVAIIGG-GLMGSGIATALILSNY---PVILK-EVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LD 385 (725)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHTTTC---CEEEE-CSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SS
T ss_pred CcEEEEEcC-CHhhHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CC
Confidence 368999998 9999999999998755 45443 22211 000 0000 0112222 23
Q ss_pred ccCCCCCcEEEEcCCCchh--hhhHHH---HHhCCCeEEEcCCCCC
Q 017153 96 EDSFDGVDIALFSAGGSIS--KKFGPI---AVEKGSIVVDNSSAFR 136 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s--~~~~~~---~~~~G~~VIDlS~~~R 136 (376)
.+.+.++|+||.|++.... .++..+ +...++.++++++.+-
T Consensus 386 ~~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~ 431 (725)
T 2wtb_A 386 YESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTID 431 (725)
T ss_dssp SGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC
T ss_pred HHHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCC
Confidence 4557899999999998753 233333 3346788889988763
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.11 Score=50.14 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=50.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|||+|. |.+|+.+.+.|..- .+++.+.. ++.. .... . ..... +.++ +.++|+|++|+|.+.. ..
T Consensus 148 gktvgIiGl-G~IG~~vA~~l~~~---G~~V~~~d-~~~~-~~~~-~--~~~~~--~l~ell~~aDvV~l~~Plt~~t~~ 216 (343)
T 2yq5_A 148 NLTVGLIGV-GHIGSAVAEIFSAM---GAKVIAYD-VAYN-PEFE-P--FLTYT--DFDTVLKEADIVSLHTPLFPSTEN 216 (343)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-SSCC-GGGT-T--TCEEC--CHHHHHHHCSEEEECCCCCTTTTT
T ss_pred CCeEEEEec-CHHHHHHHHHHhhC---CCEEEEEC-CChh-hhhh-c--ccccc--CHHHHHhcCCEEEEcCCCCHHHHH
Confidence 379999998 99999999999864 45766553 2211 1110 1 11222 3333 4689999999996422 11
Q ss_pred hH--HHH--HhCCCeEEEcCC
Q 017153 117 FG--PIA--VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~~~--~~~G~~VIDlS~ 133 (376)
.. ..+ .+.|+.+||.+.
T Consensus 217 li~~~~l~~mk~gailIN~aR 237 (343)
T 2yq5_A 217 MIGEKQLKEMKKSAYLINCAR 237 (343)
T ss_dssp CBCHHHHHHSCTTCEEEECSC
T ss_pred HhhHHHHhhCCCCcEEEECCC
Confidence 11 112 356888887663
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.12 Score=47.94 Aligned_cols=32 Identities=19% Similarity=0.493 Sum_probs=23.9
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
||.|.||||++|+.|++.|.++ ++..++.++.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~-~~g~~V~~~~ 32 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEK-YGKKNVIASD 32 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHH-HCGGGEEEEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHh-cCCCEEEEec
Confidence 5899999999999999988764 0133555554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.11 Score=44.73 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=41.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC-CCCCeEEEEEecCCCCCceeeecCcceEEeec-Cc----c--CCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TE----D--SFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~-~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~----~--~~~~~DvVf~a~~ 110 (376)
..+|.|+|+ |.+|+.+++.|.+. ++ +++++......-+.+...+......+. ++ + .+.++|+||.|+|
T Consensus 39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~---~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 39 HAQVLILGM-GRIGTGAYDELRARYGK---ISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp TCSEEEECC-SHHHHHHHHHHHHHHCS---CEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred CCcEEEECC-CHHHHHHHHHHHhccCC---eEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 468999998 99999999999875 44 455553221110011111111111111 11 1 2568999999999
Q ss_pred Cchh
Q 017153 111 GSIS 114 (376)
Q Consensus 111 ~~~s 114 (376)
....
T Consensus 115 ~~~~ 118 (183)
T 3c85_A 115 HHQG 118 (183)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 7544
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.11 Score=46.39 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=27.0
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++.++|.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G---~~V~~~~ 38 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASG---AKVVAVT 38 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 345789999999999999999998863 3665443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.097 Score=49.98 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=43.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCc--eeee---cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGK--QLSF---QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~--~~~~---~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
++||+|+|| |.+|..++-.|..++. .-+++++--.. ..|. .+.. ...++.+..-+.+++.++|+|+.+.+.
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~ 82 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGA 82 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCC
Confidence 489999999 9999999988876522 23666543211 1110 0000 012344444345568899999999875
Q ss_pred c
Q 017153 112 S 112 (376)
Q Consensus 112 ~ 112 (376)
.
T Consensus 83 ~ 83 (318)
T 1ez4_A 83 P 83 (318)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.029 Score=54.14 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=41.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC----CCeEEEEEecCCC----CCcee--eec----CcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQL--SFQ----DKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~----p~~~l~~v~s~~~----~g~~~--~~~----~~~~~v~~~~~~~~~~~Dv 104 (376)
++||+|+||+|+||..|+..|...+. .-++++.+--... .|... ... ..++.+..-+.+++.++|+
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDv 82 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCE
Confidence 48999999999999999998876421 1123655432111 12111 110 0122222212345789999
Q ss_pred EEEcCC
Q 017153 105 ALFSAG 110 (376)
Q Consensus 105 Vf~a~~ 110 (376)
||.+.+
T Consensus 83 VvitAg 88 (333)
T 5mdh_A 83 AILVGS 88 (333)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 999864
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.062 Score=51.79 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=51.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|... ..++.+.. ++......... ..... +.+ .+.++|+|++|+|... +..
T Consensus 165 g~tvgIIGl-G~IG~~vA~~l~~~---G~~V~~~d-~~~~~~~~~~~--g~~~~--~l~ell~~aDvV~l~~P~t~~t~~ 235 (335)
T 2g76_A 165 GKTLGILGL-GRIGREVATRMQSF---GMKTIGYD-PIISPEVSASF--GVQQL--PLEEIWPLCDFITVHTPLLPSTTG 235 (335)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEEC-SSSCHHHHHHT--TCEEC--CHHHHGGGCSEEEECCCCCTTTTT
T ss_pred cCEEEEEeE-CHHHHHHHHHHHHC---CCEEEEEC-CCcchhhhhhc--CceeC--CHHHHHhcCCEEEEecCCCHHHHH
Confidence 379999998 99999999999864 35665443 32211110001 11121 322 3578999999999874 232
Q ss_pred hH-HHH---HhCCCeEEEcCC
Q 017153 117 FG-PIA---VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS~ 133 (376)
+. ... .+.|+.+||.+.
T Consensus 236 li~~~~l~~mk~gailIN~ar 256 (335)
T 2g76_A 236 LLNDNTFAQCKKGVRVVNCAR 256 (335)
T ss_dssp SBCHHHHTTSCTTEEEEECSC
T ss_pred hhCHHHHhhCCCCcEEEECCC
Confidence 22 122 245777887764
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.085 Score=50.70 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=50.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCc-hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGS-ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~-~s~~ 116 (376)
.++|+|+|. |.+|+.+.+.|... ..++.+. +++.. +.... ....... +.++ +.++|+|++|+|.. ....
T Consensus 146 g~~vgIIG~-G~iG~~vA~~l~~~---G~~V~~~-d~~~~-~~~~~-~~g~~~~--~l~e~l~~aDiVil~vp~~~~t~~ 216 (333)
T 2d0i_A 146 GKKVGILGM-GAIGKAIARRLIPF---GVKLYYW-SRHRK-VNVEK-ELKARYM--DIDELLEKSDIVILALPLTRDTYH 216 (333)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGG---TCEEEEE-CSSCC-HHHHH-HHTEEEC--CHHHHHHHCSEEEECCCCCTTTTT
T ss_pred cCEEEEEcc-CHHHHHHHHHHHHC---CCEEEEE-CCCcc-hhhhh-hcCceec--CHHHHHhhCCEEEEcCCCChHHHH
Confidence 379999998 99999999999875 3466543 33221 11100 0012221 3323 46899999999987 3333
Q ss_pred hHH----HHHhCCCeEEEcC
Q 017153 117 FGP----IAVEKGSIVVDNS 132 (376)
Q Consensus 117 ~~~----~~~~~G~~VIDlS 132 (376)
... ...+.| .+||.|
T Consensus 217 ~i~~~~~~~mk~g-ilin~s 235 (333)
T 2d0i_A 217 IINEERVKKLEGK-YLVNIG 235 (333)
T ss_dssp SBCHHHHHHTBTC-EEEECS
T ss_pred HhCHHHHhhCCCC-EEEECC
Confidence 321 223567 777766
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.085 Score=50.38 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=42.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-C----Ccee--eec----CcceEEe-ecCccCCCCCcEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-A----GKQL--SFQ----DKAYTVE-ELTEDSFDGVDIA 105 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~----g~~~--~~~----~~~~~v~-~~~~~~~~~~DvV 105 (376)
+.+||+|+|+ |.+|..++..|..+++ -+++.+. ... . |... ... .....+. ..+.+++.++|+|
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~--~~v~l~D-~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvV 82 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKEL--ADVVLVD-IPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVV 82 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTC--CEEEEEC-CGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--CeEEEEe-ccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEE
Confidence 3579999998 9999999998887643 2665543 221 1 1110 000 0112233 2245668999999
Q ss_pred EEcCCC
Q 017153 106 LFSAGG 111 (376)
Q Consensus 106 f~a~~~ 111 (376)
|.|.+.
T Consensus 83 Iiaag~ 88 (315)
T 3tl2_A 83 VITAGI 88 (315)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999754
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.12 Score=49.67 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=49.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|... .+++.+.. ++... .. .. ..... +.++ +.++|+|++|+|... +..
T Consensus 146 g~~vgIiG~-G~IG~~~A~~l~~~---G~~V~~~d-~~~~~-~~-~~--~~~~~--~l~ell~~aDvV~~~~p~t~~t~~ 214 (331)
T 1xdw_A 146 NCTVGVVGL-GRIGRVAAQIFHGM---GATVIGED-VFEIK-GI-ED--YCTQV--SLDEVLEKSDIITIHAPYIKENGA 214 (331)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-SSCCC-SC-TT--TCEEC--CHHHHHHHCSEEEECCCCCTTTCC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEEC-CCccH-HH-Hh--ccccC--CHHHHHhhCCEEEEecCCchHHHH
Confidence 479999998 99999999999864 45665443 32211 11 11 11111 2222 468999999998753 222
Q ss_pred hH--H--HHHhCCCeEEEcC
Q 017153 117 FG--P--IAVEKGSIVVDNS 132 (376)
Q Consensus 117 ~~--~--~~~~~G~~VIDlS 132 (376)
.. . ...+.|+.+||.|
T Consensus 215 li~~~~l~~mk~ga~lin~s 234 (331)
T 1xdw_A 215 VVTRDFLKKMKDGAILVNCA 234 (331)
T ss_dssp SBCHHHHHTSCTTEEEEECS
T ss_pred HhCHHHHhhCCCCcEEEECC
Confidence 21 1 1134677888776
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.14 Score=45.77 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.9
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+..+|.|.|++|.+|+.+++.|.+++ .+++++.
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G---~~V~~~~ 38 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATG---ARVVAVS 38 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 334789999999999999999998863 3665443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.069 Score=49.65 Aligned_cols=88 Identities=17% Similarity=0.196 Sum_probs=50.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec-Cc--ceEEeecCccCC-C-CCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-DK--AYTVEELTEDSF-D-GVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~-~~--~~~v~~~~~~~~-~-~~DvVf~a~~~~ 112 (376)
..+|.|+|+ |-+|+.+++.|.+. . .++..+ +++. ..+.+... .. .+...+ .+++ . ++|+||.|+|.+
T Consensus 119 ~~~vlvlGa-Gg~g~a~a~~L~~~--G-~~v~v~-~R~~~~a~~l~~~~~~~~~~~~~~--~~~~~~~~~DivIn~t~~~ 191 (272)
T 1p77_A 119 NQHVLILGA-GGATKGVLLPLLQA--Q-QNIVLA-NRTFSKTKELAERFQPYGNIQAVS--MDSIPLQTYDLVINATSAG 191 (272)
T ss_dssp TCEEEEECC-SHHHHTTHHHHHHT--T-CEEEEE-ESSHHHHHHHHHHHGGGSCEEEEE--GGGCCCSCCSEEEECCCC-
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC--C-CEEEEE-ECCHHHHHHHHHHccccCCeEEee--HHHhccCCCCEEEECCCCC
Confidence 478999998 88999999999886 3 466544 3331 11111110 00 122222 2334 3 799999999987
Q ss_pred hhhh---hHHHHHhCCCeEEEcCC
Q 017153 113 ISKK---FGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 113 ~s~~---~~~~~~~~G~~VIDlS~ 133 (376)
.... ........|..|+|++-
T Consensus 192 ~~~~~~~i~~~~l~~~~~v~D~~y 215 (272)
T 1p77_A 192 LSGGTASVDAEILKLGSAFYDMQY 215 (272)
T ss_dssp ------CCCHHHHHHCSCEEESCC
T ss_pred CCCCCCCCCHHHcCCCCEEEEeeC
Confidence 6532 22233456788888864
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.09 Score=49.78 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=41.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCC--CCCcee--ee----cCcceEEe-ecCccCCCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKR--SAGKQL--SF----QDKAYTVE-ELTEDSFDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~--~~g~~~--~~----~~~~~~v~-~~~~~~~~~~DvVf~a~ 109 (376)
|||+|+|| |.||..+.-+|..+ +. -|++.+--.. ..|... .+ ......+. .-+.+++.++|+|+.+.
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~--~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitA 77 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhC--CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEec
Confidence 79999997 99999999877665 43 3666553111 112211 11 11112232 33456788999999987
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 78 G~ 79 (294)
T 2x0j_A 78 GL 79 (294)
T ss_dssp CC
T ss_pred CC
Confidence 63
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.077 Score=51.79 Aligned_cols=85 Identities=18% Similarity=0.250 Sum_probs=49.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
..+|||+|. |.+|+.+.+.|..- ..++.+. +++......... ..... +.++ +..+|+|++|+|.... ..
T Consensus 176 gktvGIIGl-G~IG~~vA~~l~~f---G~~V~~~-d~~~~~~~~~~~--g~~~~--~l~ell~~aDvV~l~~Plt~~T~~ 246 (365)
T 4hy3_A 176 GSEIGIVGF-GDLGKALRRVLSGF---RARIRVF-DPWLPRSMLEEN--GVEPA--SLEDVLTKSDFIFVVAAVTSENKR 246 (365)
T ss_dssp SSEEEEECC-SHHHHHHHHHHTTS---CCEEEEE-CSSSCHHHHHHT--TCEEC--CHHHHHHSCSEEEECSCSSCC---
T ss_pred CCEEEEecC-CcccHHHHHhhhhC---CCEEEEE-CCCCCHHHHhhc--CeeeC--CHHHHHhcCCEEEEcCcCCHHHHh
Confidence 379999998 99999999998753 4566544 333211100011 12221 2233 4689999999987532 11
Q ss_pred hH--HHH--HhCCCeEEEcC
Q 017153 117 FG--PIA--VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~--~~~--~~~G~~VIDlS 132 (376)
.. ..+ .+.|+.+||.+
T Consensus 247 li~~~~l~~mk~gailIN~a 266 (365)
T 4hy3_A 247 FLGAEAFSSMRRGAAFILLS 266 (365)
T ss_dssp CCCHHHHHTSCTTCEEEECS
T ss_pred hcCHHHHhcCCCCcEEEECc
Confidence 11 122 24678888765
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.16 Score=48.76 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=51.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|||+|. |.+|+.+.+.|... .+++.+.. ++... .. ... .... +.++ +.++|+|++|+|.... ..
T Consensus 145 g~~vgIiG~-G~IG~~~A~~l~~~---G~~V~~~d-~~~~~-~~-~~~--~~~~--~l~ell~~aDvV~~~~P~~~~t~~ 213 (333)
T 1dxy_A 145 QQTVGVMGT-GHIGQVAIKLFKGF---GAKVIAYD-PYPMK-GD-HPD--FDYV--SLEDLFKQSDVIDLHVPGIEQNTH 213 (333)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-SSCCS-SC-CTT--CEEC--CHHHHHHHCSEEEECCCCCGGGTT
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEEC-CCcch-hh-Hhc--cccC--CHHHHHhcCCEEEEcCCCchhHHH
Confidence 378999998 99999999999864 45665443 32211 11 111 1111 2223 4689999999997653 11
Q ss_pred hH--H--HHHhCCCeEEEcCC
Q 017153 117 FG--P--IAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~--~~~~~G~~VIDlS~ 133 (376)
.. . ...+.|+.+|+.|.
T Consensus 214 li~~~~l~~mk~ga~lIn~sr 234 (333)
T 1dxy_A 214 IINEAAFNLMKPGAIVINTAR 234 (333)
T ss_dssp SBCHHHHHHSCTTEEEEECSC
T ss_pred HhCHHHHhhCCCCcEEEECCC
Confidence 11 1 22356888887664
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.073 Score=51.57 Aligned_cols=87 Identities=11% Similarity=0.131 Sum_probs=50.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|... .+++.+. +++... ..... ...... .+.++ +.++|+|++|+|... ...
T Consensus 168 g~tvGIIG~-G~IG~~vA~~l~~~---G~~V~~~-d~~~~~-~~~~~-~g~~~~-~~l~ell~~aDvV~l~~P~t~~t~~ 239 (347)
T 1mx3_A 168 GETLGIIGL-GRVGQAVALRAKAF---GFNVLFY-DPYLSD-GVERA-LGLQRV-STLQDLLFHSDCVTLHCGLNEHNHH 239 (347)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEE-CTTSCT-THHHH-HTCEEC-SSHHHHHHHCSEEEECCCCCTTCTT
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHC---CCEEEEE-CCCcch-hhHhh-cCCeec-CCHHHHHhcCCEEEEcCCCCHHHHH
Confidence 478999998 99999999999875 3566544 332211 11100 011111 12222 468999999998753 222
Q ss_pred hH-HHH---HhCCCeEEEcCC
Q 017153 117 FG-PIA---VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS~ 133 (376)
.. ... .+.|+.+||.+.
T Consensus 240 li~~~~l~~mk~gailIN~ar 260 (347)
T 1mx3_A 240 LINDFTVKQMRQGAFLVNTAR 260 (347)
T ss_dssp SBSHHHHTTSCTTEEEEECSC
T ss_pred HhHHHHHhcCCCCCEEEECCC
Confidence 22 222 245777887664
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=92.59 E-value=0.051 Score=51.97 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=49.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~ 115 (376)
.++|||+|. |.+|+.+.+.|... ..++.+.. + +.. +.... ........ +.++ +.++|+|++|+|... ..
T Consensus 146 g~~vgIIG~-G~IG~~~A~~l~~~---G~~V~~~d-~~~~~-~~~~~-~~g~~~~~-~l~ell~~aDvVil~~p~~~~t~ 217 (320)
T 1gdh_A 146 NKTLGIYGF-GSIGQALAKRAQGF---DMDIDYFD-THRAS-SSDEA-SYQATFHD-SLDSLLSVSQFFSLNAPSTPETR 217 (320)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEEC-SSCCC-HHHHH-HHTCEECS-SHHHHHHHCSEEEECCCCCTTTT
T ss_pred CCEEEEECc-CHHHHHHHHHHHHC---CCEEEEEC-CCCcC-hhhhh-hcCcEEcC-CHHHHHhhCCEEEEeccCchHHH
Confidence 379999998 99999999999864 35665443 3 221 11100 00122211 2222 468999999999753 22
Q ss_pred hhH-HHH---HhCCCeEEEcCC
Q 017153 116 KFG-PIA---VEKGSIVVDNSS 133 (376)
Q Consensus 116 ~~~-~~~---~~~G~~VIDlS~ 133 (376)
... ... .+.|+.+||.+.
T Consensus 218 ~~i~~~~l~~mk~gailIn~ar 239 (320)
T 1gdh_A 218 YFFNKATIKSLPQGAIVVNTAR 239 (320)
T ss_dssp TCBSHHHHTTSCTTEEEEECSC
T ss_pred hhcCHHHHhhCCCCcEEEECCC
Confidence 222 111 245666776654
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.52 E-value=0.22 Score=44.26 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+++.|++++ . .+++++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g--~~~~V~~~~ 36 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDK--NIRHIIATA 36 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCT--TCCEEEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHHhcC--CCcEEEEEe
Confidence 3689999999999999999999863 1 4666554
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.097 Score=50.26 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=43.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCC--CCCc--eeeec---CcceEEeecCccCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKR--SAGK--QLSFQ---DKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~--~~g~--~~~~~---~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
.+||+|+|+ |.+|..++..|... +.+ +++.+-... ..|. .+... .....+..-+.+++.++|+||.+.+
T Consensus 9 ~~kV~ViGa-G~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag 85 (326)
T 3vku_A 9 HQKVILVGD-GAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAG 85 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCC
Confidence 479999998 99999999988876 433 666543211 0111 00000 0133444334566889999999976
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 86 ~ 86 (326)
T 3vku_A 86 A 86 (326)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.15 Score=48.77 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=26.4
Q ss_pred cccccccccccccccCCCCCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 5 SSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.... -|.--.||+-+.+| +++|.|.||||++|+.|++.|.+++ .+++++.
T Consensus 3 ~~~~~~~--~~~~~~~~~~~~~M-----------~~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 55 (375)
T 1t2a_A 3 SSHHHHH--HSSGRENKYFQGHM-----------RNVALITGITGQDGSYLAEFLLEKG---YEVHGIV 55 (375)
T ss_dssp ----------------------------------CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred ccccccc--ccccccchhhHhhc-----------CcEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 4554433 34555677766664 2689999999999999999998863 4676655
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.16 Score=48.00 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=42.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCce--eeec----CcceEEee-cCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LSFQ----DKAYTVEE-LTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~--~~~~----~~~~~v~~-~~~~~~~~~DvVf~a~~ 110 (376)
|||+|+|+ |++|..+...|...+. ..++..+..... .+.. +... .....+.. .+.+++.++|+||.|.|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~-g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~~aDvViiav~ 78 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG 78 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHHCCCCEEEEeCC
Confidence 58999999 9999999998887521 346665532211 1110 0000 01222332 34455889999999996
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 79 ~ 79 (310)
T 1guz_A 79 L 79 (310)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.034 Score=52.59 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec-Ccce-EEeecC--ccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-DKAY-TVEELT--EDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~-~~~~-~v~~~~--~~~~~~~DvVf~a~~~~~ 113 (376)
..+|.|+|+ |-+|+.+++.|.+. ..-++.. .+++. ..+.+... +... .+...+ .+.+.++|+||.|+|.+.
T Consensus 141 ~~~vlVlGa-Gg~g~aia~~L~~~--G~~~V~v-~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 141 GKRILVIGA-GGGARGIYFSLLST--AAERIDM-ANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT--TCSEEEE-ECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCEEEEECc-HHHHHHHHHHHHHC--CCCEEEE-EeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence 478999998 88999999999886 2225554 34331 11111110 0000 111111 123468999999999875
Q ss_pred hhh-----hHHHHHhCCCeEEEcCC
Q 017153 114 SKK-----FGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 114 s~~-----~~~~~~~~G~~VIDlS~ 133 (376)
... .....++.|..|+|++-
T Consensus 217 ~~~~~~~~i~~~~l~~~~~v~D~~y 241 (297)
T 2egg_A 217 HPRVEVQPLSLERLRPGVIVSDIIY 241 (297)
T ss_dssp SSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred CCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 421 11112334566666653
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.033 Score=54.16 Aligned_cols=87 Identities=13% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|||+|. |.+|+.+.+.|... ..++.+.. ++......... ...... +.+ .+.++|+|++|+|.... ..
T Consensus 160 g~tvGIIGl-G~IG~~vA~~l~~~---G~~V~~~d-~~~~~~~~~~~--g~~~~~-~l~ell~~aDiV~l~~Plt~~t~~ 231 (352)
T 3gg9_A 160 GQTLGIFGY-GKIGQLVAGYGRAF---GMNVLVWG-RENSKERARAD--GFAVAE-SKDALFEQSDVLSVHLRLNDETRS 231 (352)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-SHHHHHHHHHT--TCEECS-SHHHHHHHCSEEEECCCCSTTTTT
T ss_pred CCEEEEEeE-CHHHHHHHHHHHhC---CCEEEEEC-CCCCHHHHHhc--CceEeC-CHHHHHhhCCEEEEeccCcHHHHH
Confidence 479999998 99999999999874 45766543 22100000001 122111 222 24689999999986532 22
Q ss_pred hH--HHH--HhCCCeEEEcCC
Q 017153 117 FG--PIA--VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~~~--~~~G~~VIDlS~ 133 (376)
.. ..+ .+.|+.+||.+.
T Consensus 232 li~~~~l~~mk~gailIN~aR 252 (352)
T 3gg9_A 232 IITVADLTRMKPTALFVNTSR 252 (352)
T ss_dssp CBCHHHHTTSCTTCEEEECSC
T ss_pred hhCHHHHhhCCCCcEEEECCC
Confidence 21 122 256888998764
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.11 Score=49.67 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCc--eeeec---CcceEEeecCccCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGK--QLSFQ---DKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~--~~~~~---~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
++||+|+|| |.+|..++-.|..++. .-+++++ +... .|. .+... ..++.+..-+.+++.++|+|+.+.+
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~-~~el~L~-Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag 85 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGI-AQEIGIV-DIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAG 85 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEE-CSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCC-CCEEEEE-eCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence 589999999 9999999988876622 2356654 3211 111 01110 1234444334556889999999986
Q ss_pred Cc
Q 017153 111 GS 112 (376)
Q Consensus 111 ~~ 112 (376)
..
T Consensus 86 ~~ 87 (326)
T 2zqz_A 86 AP 87 (326)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.053 Score=52.50 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=40.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCce--ee---ecCcceEEeecCc-cCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LS---FQDKAYTVEELTE-DSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~--~~---~~~~~~~v~~~~~-~~~~~~DvVf~a~~ 110 (376)
.+||+|+|++|++|..++..+...+. .-+++.+--... .|.. +. +....+.+. .+. +++.++|+||.|.+
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t-~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFT-SDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEE-SCHHHHHTTEEEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEc-CCHHHHhCCCCEEEEccC
Confidence 48999999999999999987766532 125654421110 1110 10 111122222 232 34789999999975
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 86 ~ 86 (343)
T 3fi9_A 86 A 86 (343)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.037 Score=51.97 Aligned_cols=88 Identities=14% Similarity=0.187 Sum_probs=45.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecC-c-cCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT-E-DSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~-~-~~~~~~DvVf~a~~~~~s~ 115 (376)
..+|.|+|+ |-+|+.++..|.+.+.. ++. +.+|+. ..+.+.. .+.....+ . +.+.++|+||.|+|.+...
T Consensus 117 ~k~vlvlGa-Gg~g~aia~~L~~~G~~--~v~-v~~R~~~~a~~la~---~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~ 189 (277)
T 3don_A 117 DAYILILGA-GGASKGIANELYKIVRP--TLT-VANRTMSRFNNWSL---NINKINLSHAESHLDEFDIIINTTPAGMNG 189 (277)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHTTCCS--CCE-EECSCGGGGTTCCS---CCEEECHHHHHHTGGGCSEEEECCC-----
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCC--EEE-EEeCCHHHHHHHHH---hcccccHhhHHHHhcCCCEEEECccCCCCC
Confidence 368999998 89999999999886322 443 334432 1112211 11221111 1 2246799999999987543
Q ss_pred hh----HHHHHhCCCeEEEcCC
Q 017153 116 KF----GPIAVEKGSIVVDNSS 133 (376)
Q Consensus 116 ~~----~~~~~~~G~~VIDlS~ 133 (376)
.. ....+..|..|+|++.
T Consensus 190 ~~~~~l~~~~l~~~~~V~D~vY 211 (277)
T 3don_A 190 NTDSVISLNRLASHTLVSDIVY 211 (277)
T ss_dssp --CCSSCCTTCCSSCEEEESCC
T ss_pred CCcCCCCHHHcCCCCEEEEecC
Confidence 21 0112234556666653
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.13 Score=45.55 Aligned_cols=77 Identities=9% Similarity=0.143 Sum_probs=45.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEE-e-ec-Ccc-----CCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-E-EL-TED-----SFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v-~-~~-~~~-----~~~~~DvVf~a~~~ 111 (376)
|||.|+|+ |.+|+.+++.|.+.++ +++++......-+.+... .+..+ . +. +++ .+.++|+||.|++.
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~---~v~vid~~~~~~~~l~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 75 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKY---GVVIINKDRELCEEFAKK-LKATIIHGDGSHKEILRDAEVSKNDVVVILTPR 75 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTC---CEEEEESCHHHHHHHHHH-SSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---eEEEEECCHHHHHHHHHH-cCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence 57999998 9999999999988644 555554321111111100 01122 1 11 111 24689999999999
Q ss_pred chhhhhHHHH
Q 017153 112 SISKKFGPIA 121 (376)
Q Consensus 112 ~~s~~~~~~~ 121 (376)
+.....+...
T Consensus 76 d~~n~~~~~~ 85 (218)
T 3l4b_C 76 DEVNLFIAQL 85 (218)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 8654444433
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.13 Score=48.09 Aligned_cols=88 Identities=11% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcceEEeecCccCC--CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKAYTVEELTEDSF--DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~~~v~~~~~~~~--~~~DvVf~a~~~~~ 113 (376)
..++.|+|+ |-+|+.++..|.+. ..-++. +.+|+.. .+.+.. ....+.+... +++ .++|+||.|+|.+.
T Consensus 120 ~k~~lvlGa-Gg~~~aia~~L~~~--G~~~v~-i~~R~~~~a~~la~~~~~~~~~~~~~--~~l~~~~~DivInaTp~gm 193 (272)
T 3pwz_A 120 NRRVLLLGA-GGAVRGALLPFLQA--GPSELV-IANRDMAKALALRNELDHSRLRISRY--EALEGQSFDIVVNATSASL 193 (272)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHT--CCSEEE-EECSCHHHHHHHHHHHCCTTEEEECS--GGGTTCCCSEEEECSSGGG
T ss_pred CCEEEEECc-cHHHHHHHHHHHHc--CCCEEE-EEeCCHHHHHHHHHHhccCCeeEeeH--HHhcccCCCEEEECCCCCC
Confidence 478999998 88999999999886 323554 4444321 111111 0011222222 222 57999999999875
Q ss_pred hhh---hHHHHHhCCCeEEEcC
Q 017153 114 SKK---FGPIAVEKGSIVVDNS 132 (376)
Q Consensus 114 s~~---~~~~~~~~G~~VIDlS 132 (376)
..+ .....+..+..|+|+.
T Consensus 194 ~~~~~~i~~~~l~~~~~V~Dlv 215 (272)
T 3pwz_A 194 TADLPPLPADVLGEAALAYELA 215 (272)
T ss_dssp GTCCCCCCGGGGTTCSEEEESS
T ss_pred CCCCCCCCHHHhCcCCEEEEee
Confidence 422 1112234556666654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.18 Score=47.16 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=26.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
.+||.|.|+||++|+.|++.|.+++ .+++++..
T Consensus 14 ~~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r 46 (335)
T 1rpn_A 14 TRSALVTGITGQDGAYLAKLLLEKG---YRVHGLVA 46 (335)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEEC
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC---CeEEEEeC
Confidence 5899999999999999999998863 46766653
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.066 Score=50.31 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=41.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeec-Cc--ceEEeecCccCC-CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-DK--AYTVEELTEDSF-DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~-~~--~~~v~~~~~~~~-~~~DvVf~a~~~~~ 113 (376)
..++.|+|+ |-+|+.++..|.+. ..-++..+ +++. ..+.+... .. .+..... +++ .++|+||.|+|.+.
T Consensus 126 ~k~vlvlGa-Gg~g~aia~~L~~~--G~~~v~v~-~R~~~~a~~la~~~~~~~~~~~~~~--~~l~~~aDiIInaTp~gm 199 (281)
T 3o8q_A 126 GATILLIGA-GGAARGVLKPLLDQ--QPASITVT-NRTFAKAEQLAELVAAYGEVKAQAF--EQLKQSYDVIINSTSASL 199 (281)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT--CCSEEEEE-ESSHHHHHHHHHHHGGGSCEEEEEG--GGCCSCEEEEEECSCCCC
T ss_pred CCEEEEECc-hHHHHHHHHHHHhc--CCCeEEEE-ECCHHHHHHHHHHhhccCCeeEeeH--HHhcCCCCEEEEcCcCCC
Confidence 478999998 88999999999886 32355544 4331 11111110 00 1223222 223 68999999999875
Q ss_pred h
Q 017153 114 S 114 (376)
Q Consensus 114 s 114 (376)
.
T Consensus 200 ~ 200 (281)
T 3o8q_A 200 D 200 (281)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.95 E-value=0.36 Score=43.69 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+++++.|++++....+++++.
T Consensus 21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~ 55 (267)
T 1sny_A 21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTC 55 (267)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEE
T ss_pred CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEe
Confidence 36899999999999999999998631115666554
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.14 Score=51.18 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=24.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.+.+|+|+|. ||+|.-+.-.|++.+| ++..+
T Consensus 20 ~m~~IaViGl-GYVGLp~A~~~A~~G~---~V~g~ 50 (444)
T 3vtf_A 20 HMASLSVLGL-GYVGVVHAVGFALLGH---RVVGY 50 (444)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTC---EEEEE
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHhCCC---cEEEE
Confidence 3479999997 9999999999987644 66655
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.11 Score=46.14 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.++|.|.|++|.+|+.+.+.|.+++ .+++++.
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G---~~V~~~~ 36 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKG---YRVGLMA 36 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 34689999999999999999999864 3565443
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.31 Score=47.03 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=59.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCCCCcee-----------ee--------cCcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQL-----------SF--------QDKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~~g~~~-----------~~--------~~~~~~v~~~~ 95 (376)
..||.|+|+ |-+|.++++.|... ..-++..+-. .+...+.+ .. ....+.+....
T Consensus 34 ~~~VlIvGa-GGlGs~va~~La~a--GVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~ 110 (340)
T 3rui_A 34 NTKVLLLGA-GTLGCYVSRALIAW--GVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK 110 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEe
Confidence 479999999 99999999999886 3345554421 11222111 10 01123333211
Q ss_pred -----------------------ccCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCCC
Q 017153 96 -----------------------EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVE 139 (376)
Q Consensus 96 -----------------------~~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~~ 139 (376)
.+.+.++|+||.|+....++.....+ ...|..+|+.+ ++++.
T Consensus 111 ~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa--~G~~G 176 (340)
T 3rui_A 111 LSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA--LGFDS 176 (340)
T ss_dssp CCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE--ECSSE
T ss_pred ccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee--ecceE
Confidence 01135789999999998887666544 57899999743 66543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.13 Score=48.50 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=42.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC---CCcee--ee----cCcceEEe-ecCccCCCCCcEEEEc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS---AGKQL--SF----QDKAYTVE-ELTEDSFDGVDIALFS 108 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~---~g~~~--~~----~~~~~~v~-~~~~~~~~~~DvVf~a 108 (376)
|||+|+|| |.+|..++..|..+ +.+ +++.+. .+. .|... .. ......+. ..+.+.+.++|+||.|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~--~~~~~v~L~D-~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLN--LDVDEIALVD-IAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVT 76 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--SCCSEEEEEC-SSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhC--CCCCeEEEEE-CChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEEC
Confidence 68999999 99999999988876 333 565443 221 11111 11 01122343 2245667899999999
Q ss_pred CCC
Q 017153 109 AGG 111 (376)
Q Consensus 109 ~~~ 111 (376)
.+.
T Consensus 77 ag~ 79 (294)
T 1oju_A 77 AGL 79 (294)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.18 Score=50.01 Aligned_cols=85 Identities=15% Similarity=0.289 Sum_probs=50.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|||+|. |.+|+.+.+.+..- .+++.+.. ++.. .... ... ...+.++ +..+|+|++|+|.... ..
T Consensus 156 gktvGIIGl-G~IG~~vA~~l~~~---G~~V~~yd-~~~~---~~~~--~~~-~~~sl~ell~~aDvV~lhvPlt~~T~~ 224 (416)
T 3k5p_A 156 GKTLGIVGY-GNIGSQVGNLAESL---GMTVRYYD-TSDK---LQYG--NVK-PAASLDELLKTSDVVSLHVPSSKSTSK 224 (416)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-TTCC---CCBT--TBE-ECSSHHHHHHHCSEEEECCCC-----C
T ss_pred CCEEEEEee-CHHHHHHHHHHHHC---CCEEEEEC-Ccch---hccc--CcE-ecCCHHHHHhhCCEEEEeCCCCHHHhh
Confidence 379999998 99999999999874 45766543 2211 0011 111 1112222 4689999999997532 22
Q ss_pred hH--HHH--HhCCCeEEEcCCC
Q 017153 117 FG--PIA--VEKGSIVVDNSSA 134 (376)
Q Consensus 117 ~~--~~~--~~~G~~VIDlS~~ 134 (376)
.. ..+ .+.|+.+||.|-.
T Consensus 225 li~~~~l~~mk~gailIN~aRG 246 (416)
T 3k5p_A 225 LITEAKLRKMKKGAFLINNARG 246 (416)
T ss_dssp CBCHHHHHHSCTTEEEEECSCT
T ss_pred hcCHHHHhhCCCCcEEEECCCC
Confidence 21 222 3578999987744
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.21 Score=46.64 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.||||++|+.|++.|.+++ .++.++.
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G---~~V~~~~ 34 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKG---YEVYGAD 34 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEE
Confidence 3789999999999999999998863 4666554
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.086 Score=50.64 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=49.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|... ..++.+. +++......... ..... .+.++ +..+|+|++|+|.+. +..
T Consensus 145 g~tvGIIG~-G~IG~~vA~~l~~~---G~~V~~~-d~~~~~~~~~~~-~g~~~--~~l~ell~~aDvV~l~~P~t~~t~~ 216 (330)
T 4e5n_A 145 NATVGFLGM-GAIGLAMADRLQGW---GATLQYH-EAKALDTQTEQR-LGLRQ--VACSELFASSDFILLALPLNADTLH 216 (330)
T ss_dssp TCEEEEECC-SHHHHHHHHHTTTS---CCEEEEE-CSSCCCHHHHHH-HTEEE--CCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred CCEEEEEee-CHHHHHHHHHHHHC---CCEEEEE-CCCCCcHhHHHh-cCcee--CCHHHHHhhCCEEEEcCCCCHHHHH
Confidence 479999998 99999999998764 3566544 333211110000 01222 13233 468999999999643 222
Q ss_pred hH-HHH---HhCCCeEEEcCC
Q 017153 117 FG-PIA---VEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS~ 133 (376)
.. ... .+.|+.+||.+.
T Consensus 217 li~~~~l~~mk~gailIN~ar 237 (330)
T 4e5n_A 217 LVNAELLALVRPGALLVNPCR 237 (330)
T ss_dssp CBCHHHHTTSCTTEEEEECSC
T ss_pred HhCHHHHhhCCCCcEEEECCC
Confidence 22 122 245777887653
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=91.41 E-value=0.12 Score=50.87 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=49.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~-s~~ 116 (376)
.++|||+|. |.+|+.+.+.|... ..++.+. +++......... ...... .+. +.+.++|+|++++|... +..
T Consensus 191 gktvGIIGl-G~IG~~vA~~l~a~---G~~V~~~-d~~~~~~~~~~~-~G~~~~-~~l~ell~~aDvV~l~~Plt~~t~~ 263 (393)
T 2nac_A 191 AMHVGTVAA-GRIGLAVLRRLAPF---DVHLHYT-DRHRLPESVEKE-LNLTWH-ATREDMYPVCDVVTLNCPLHPETEH 263 (393)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGG---TCEEEEE-CSSCCCHHHHHH-HTCEEC-SSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred CCEEEEEeE-CHHHHHHHHHHHhC---CCEEEEE-cCCccchhhHhh-cCceec-CCHHHHHhcCCEEEEecCCchHHHH
Confidence 379999998 99999999999864 3566544 332211111100 011211 122 23578999999999652 222
Q ss_pred hH-HHH---HhCCCeEEEcC
Q 017153 117 FG-PIA---VEKGSIVVDNS 132 (376)
Q Consensus 117 ~~-~~~---~~~G~~VIDlS 132 (376)
.. ... .+.|+.+|+.+
T Consensus 264 li~~~~l~~mk~gailIN~a 283 (393)
T 2nac_A 264 MINDETLKLFKRGAYIVNTA 283 (393)
T ss_dssp CBSHHHHTTSCTTEEEEECS
T ss_pred HhhHHHHhhCCCCCEEEECC
Confidence 22 122 24567777665
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.19 Score=45.76 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=28.0
Q ss_pred CCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 34 SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 34 ~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++..+.++|.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 2 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~ 38 (263)
T 3ai3_A 2 DMGISGKVAVITGSSSGIGLAIAEGFAKEG---AHIVLVA 38 (263)
T ss_dssp CCCCTTCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEc
Confidence 333345789999999999999999999873 3665443
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.23 Score=47.46 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=26.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.||||++|+.|++.|.+++ .+++++.
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g---~~V~~~~ 59 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG---YEVHGLI 59 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 689999999999999999998863 4676654
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.15 E-value=0.079 Score=52.01 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=48.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS--- 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s--- 114 (376)
.++|||+|. |.+|+.+.+.|..- .+++.+........ . ..... .+.++ +.++|+|++++|....
T Consensus 119 gktvGIIGl-G~IG~~vA~~l~a~---G~~V~~~d~~~~~~-----~-~~~~~--~sl~ell~~aDiV~l~~Plt~~g~~ 186 (381)
T 3oet_A 119 DRTIGIVGV-GNVGSRLQTRLEAL---GIRTLLCDPPRAAR-----G-DEGDF--RTLDELVQEADVLTFHTPLYKDGPY 186 (381)
T ss_dssp GCEEEEECC-SHHHHHHHHHHHHT---TCEEEEECHHHHHT-----T-CCSCB--CCHHHHHHHCSEEEECCCCCCSSTT
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHC---CCEEEEECCChHHh-----c-cCccc--CCHHHHHhhCCEEEEcCcCCccccc
Confidence 379999998 99999999999874 45666543211000 0 00111 12222 4689999999986543
Q ss_pred --hhhH--HHH--HhCCCeEEEcC
Q 017153 115 --KKFG--PIA--VEKGSIVVDNS 132 (376)
Q Consensus 115 --~~~~--~~~--~~~G~~VIDlS 132 (376)
.... ..+ .+.|+.+||.|
T Consensus 187 ~T~~li~~~~l~~mk~gailIN~a 210 (381)
T 3oet_A 187 KTLHLADETLIRRLKPGAILINAC 210 (381)
T ss_dssp CCTTSBCHHHHHHSCTTEEEEECS
T ss_pred cchhhcCHHHHhcCCCCcEEEECC
Confidence 1111 112 24677777665
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=91.11 E-value=1.2 Score=40.54 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~ 39 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEG---SKVIDLS 39 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 3689999999999999999999863 3665554
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.09 E-value=0.33 Score=44.47 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|++|.+|+.+++.|.+++ .+++++.
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~G---~~V~~~~ 63 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQG---LKVVGCA 63 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 3689999999999999999999863 4665544
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=91.06 E-value=0.2 Score=47.40 Aligned_cols=68 Identities=13% Similarity=0.285 Sum_probs=40.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceee----ec----CcceEEee-cCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS----FQ----DKAYTVEE-LTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~----~~----~~~~~v~~-~~~~~~~~~DvVf~a 108 (376)
++||+|+|+ |.+|..+...|..+++ .++..+ +.+.. -+... .. .....+.. .+.+.+.++|+||.|
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~--~~V~l~-D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~~~aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNL--ADVVLF-DIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIIT 79 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC--CEEEEE-CSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--ceEEEE-eCCchHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEe
Confidence 479999999 9999999999987632 365444 33221 00000 00 00112322 234557899999999
Q ss_pred CC
Q 017153 109 AG 110 (376)
Q Consensus 109 ~~ 110 (376)
.+
T Consensus 80 vg 81 (317)
T 2ewd_A 80 AS 81 (317)
T ss_dssp CC
T ss_pred CC
Confidence 85
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=91.01 E-value=0.3 Score=46.91 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=41.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCce--eeec---CcceEE-eecCccCCCCCcEEEEcC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQ--LSFQ---DKAYTV-EELTEDSFDGVDIALFSA 109 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~--~~~~---~~~~~v-~~~~~~~~~~~DvVf~a~ 109 (376)
..+||+|+|+ |.+|..++..|..+++ .-+++.+--.. ..|.. +... .....+ ...+.+++.++|+||.+.
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~-~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~a 95 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDL-ADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITA 95 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGTTEEEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhCCCCEEEEcc
Confidence 3589999998 9999999988877622 12565542111 11110 1100 001122 233456688999999987
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 96 G~ 97 (331)
T 4aj2_A 96 GA 97 (331)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=90.88 E-value=0.18 Score=47.94 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=43.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCc--eeeec---CcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGK--QLSFQ---DKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~--~~~~~---~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
+||+|+|+ |.+|..++-.|..++ ..-+++++--.. ..|. .+... ..+..+..-+.+++.++|+|+.+.+..
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~-~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~ 78 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLG-VAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA 78 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence 58999999 999999998887763 234666553211 1110 00010 123445433455688999999987653
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=0.15 Score=49.86 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=41.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCC-CC---eEEEEEecCCC----CCcee--eec----CcceEEeecCccCCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDF-PY---RSIKMLASKRS----AGKQL--SFQ----DKAYTVEELTEDSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~-p~---~~l~~v~s~~~----~g~~~--~~~----~~~~~v~~~~~~~~~~~Dv 104 (376)
++||+|+||+|.||..++-.|...+. .. +.+..+.-+.. .|... .+. ...+.+..-+.+++.++|+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDv 111 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 111 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCE
Confidence 57999999999999999988876521 11 22332322111 11111 111 0123333222456889999
Q ss_pred EEEcCCC
Q 017153 105 ALFSAGG 111 (376)
Q Consensus 105 Vf~a~~~ 111 (376)
|+.+.+.
T Consensus 112 VVitag~ 118 (375)
T 7mdh_A 112 ALLIGAK 118 (375)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998653
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=90.80 E-value=0.21 Score=50.60 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=51.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcC---CCCCeEEEEEecCCCCCceee--ecCcc--eEEeecCccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDR---DFPYRSIKMLASKRSAGKQLS--FQDKA--YTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~---~~p~~~l~~v~s~~~~g~~~~--~~~~~--~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
+||+|||. |.+|..+++.|... ..+.+++.+...+........ .+... -..... .+...++|+||+|+|..
T Consensus 55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~-aEAa~~ADVVILaVP~~ 132 (525)
T 3fr7_A 55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDI-WETVSGSDLVLLLISDA 132 (525)
T ss_dssp SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEH-HHHHHHCSEEEECSCHH
T ss_pred CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCH-HHHHhcCCEEEECCChH
Confidence 79999998 99999999988764 001345543332221111111 11110 001111 22346899999999997
Q ss_pred hhhhhHHHHH---hCCCeEEEcCC
Q 017153 113 ISKKFGPIAV---EKGSIVVDNSS 133 (376)
Q Consensus 113 ~s~~~~~~~~---~~G~~VIDlS~ 133 (376)
...+....+. +.|..|+..++
T Consensus 133 ~~~eVl~eI~p~LK~GaILs~AaG 156 (525)
T 3fr7_A 133 AQADNYEKIFSHMKPNSILGLSHG 156 (525)
T ss_dssp HHHHHHHHHHHHSCTTCEEEESSS
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCC
Confidence 7666555443 46777655444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.12 Score=50.22 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-cCcceEEeecCcc----CCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVEELTED----SFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-~~~~~~v~~~~~~----~~~~~DvVf~a~~~~ 112 (376)
..+|+|+|+ |.+|+.+++.+...+ .++.++. ++.. -+.... .+..+.....+.+ .+.++|+||.|++..
T Consensus 166 ~~~V~ViGa-G~iG~~~a~~l~~~G---a~V~~~d-~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 166 PASVVILGG-GTVGTNAAKIALGMG---AQVTILD-VNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEEE-SCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC---CEEEEEE-CCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence 379999999 999999999998763 3665443 2211 000100 1112211111111 235789999999864
Q ss_pred h-------hhhhHHHHHhCCCeEEEcCCC
Q 017153 113 I-------SKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~-------s~~~~~~~~~~G~~VIDlS~~ 134 (376)
. ..+..+. .+.|..+||.+.+
T Consensus 241 ~~~~~~li~~~~l~~-mk~gg~iV~v~~~ 268 (369)
T 2eez_A 241 GAKAPKLVTRDMLSL-MKEGAVIVDVAVD 268 (369)
T ss_dssp -----CCSCHHHHTT-SCTTCEEEECC--
T ss_pred ccccchhHHHHHHHh-hcCCCEEEEEecC
Confidence 3 2222222 2468889999875
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.22 Score=49.12 Aligned_cols=84 Identities=11% Similarity=0.149 Sum_probs=52.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~~ 116 (376)
.+++||+|. |.+|+.+.+.+... ..++.+.. ++.. .. .+ ..... .+.++ +.++|+|++|+|... +..
T Consensus 145 gktlGiIGl-G~IG~~vA~~l~~~---G~~V~~~d-~~~~-~~--~~--~~~~~-~~l~ell~~aDvV~l~~P~t~~t~~ 213 (404)
T 1sc6_A 145 GKKLGIIGY-GHIGTQLGILAESL---GMYVYFYD-IENK-LP--LG--NATQV-QHLSDLLNMSDVVSLHVPENPSTKN 213 (404)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-SSCC-CC--CT--TCEEC-SCHHHHHHHCSEEEECCCSSTTTTT
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHC---CCEEEEEc-CCch-hc--cC--Cceec-CCHHHHHhcCCEEEEccCCChHHHH
Confidence 379999998 99999999999874 46765543 3211 11 11 11111 12223 468999999999863 222
Q ss_pred hH--H--HHHhCCCeEEEcCC
Q 017153 117 FG--P--IAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~--~~~~~G~~VIDlS~ 133 (376)
.. . ...+.|+.+|+.|.
T Consensus 214 li~~~~l~~mk~ga~lIN~aR 234 (404)
T 1sc6_A 214 MMGAKEISLMKPGSLLINASR 234 (404)
T ss_dssp CBCHHHHHHSCTTEEEEECSC
T ss_pred HhhHHHHhhcCCCeEEEECCC
Confidence 22 1 22357899998874
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=90.68 E-value=0.17 Score=46.84 Aligned_cols=69 Identities=13% Similarity=0.241 Sum_probs=41.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec-Cc--ceEEeecCccCC--CCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DK--AYTVEELTEDSF--DGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~-~~--~~~v~~~~~~~~--~~~DvVf~a~~~~ 112 (376)
..+|.|+|+ |-+|+.+++.|.+. . .++..+ +++.. .+.+... +. .+.+. +.+++ .++|+++.|+|..
T Consensus 119 ~k~vlViGa-Gg~g~a~a~~L~~~--G-~~V~v~-~R~~~~~~~la~~~~~~~~~~~~--~~~~~~~~~~DivVn~t~~~ 191 (271)
T 1nyt_A 119 GLRILLIGA-GGASRGVLLPLLSL--D-CAVTIT-NRTVSRAEELAKLFAHTGSIQAL--SMDELEGHEFDLIINATSSG 191 (271)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT--T-CEEEEE-CSSHHHHHHHHHHTGGGSSEEEC--CSGGGTTCCCSEEEECCSCG
T ss_pred CCEEEEECC-cHHHHHHHHHHHHc--C-CEEEEE-ECCHHHHHHHHHHhhccCCeeEe--cHHHhccCCCCEEEECCCCC
Confidence 368999999 88999999999886 3 466543 43311 1111110 00 12222 22233 4799999999976
Q ss_pred hh
Q 017153 113 IS 114 (376)
Q Consensus 113 ~s 114 (376)
..
T Consensus 192 ~~ 193 (271)
T 1nyt_A 192 IS 193 (271)
T ss_dssp GG
T ss_pred CC
Confidence 54
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=90.62 E-value=0.11 Score=50.57 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeE-EEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRS-IKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI-SK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~-l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~-s~ 115 (376)
.++|+|+|. |.+|+.+++.|... ..+ +.+. +++......... ...... .+.++ +.++|+|++|+|... +.
T Consensus 164 g~tvgIIG~-G~IG~~vA~~l~~~---G~~~V~~~-d~~~~~~~~~~~-~g~~~~-~~l~ell~~aDvV~l~~P~t~~t~ 236 (364)
T 2j6i_A 164 GKTIATIGA-GRIGYRVLERLVPF---NPKELLYY-DYQALPKDAEEK-VGARRV-ENIEELVAQADIVTVNAPLHAGTK 236 (364)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGG---CCSEEEEE-CSSCCCHHHHHH-TTEEEC-SSHHHHHHTCSEEEECCCCSTTTT
T ss_pred CCEEEEECc-CHHHHHHHHHHHhC---CCcEEEEE-CCCccchhHHHh-cCcEec-CCHHHHHhcCCEEEECCCCChHHH
Confidence 379999998 99999999999864 344 5443 332211111000 011111 12222 468999999999863 22
Q ss_pred hhH-HHH---HhCCCeEEEcCC
Q 017153 116 KFG-PIA---VEKGSIVVDNSS 133 (376)
Q Consensus 116 ~~~-~~~---~~~G~~VIDlS~ 133 (376)
... ... .+.|+.+|+.+.
T Consensus 237 ~li~~~~l~~mk~ga~lIn~ar 258 (364)
T 2j6i_A 237 GLINKELLSKFKKGAWLVNTAR 258 (364)
T ss_dssp TCBCHHHHTTSCTTEEEEECSC
T ss_pred HHhCHHHHhhCCCCCEEEECCC
Confidence 222 111 245677776653
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=90.61 E-value=0.23 Score=46.60 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=25.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.||||++|+.|++.|+++++ +++++.
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~ 36 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLERGY---TVRATV 36 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC---EEEEEE
Confidence 47899999999999999999988643 666544
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=90.46 E-value=0.45 Score=42.90 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=26.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+++++.|.+++ .+++++.
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G---~~V~~~~ 43 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQG---ASAVLLD 43 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 4789999999999999999999873 4666554
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=90.46 E-value=0.36 Score=46.40 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=41.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC--CCce--eeec---CcceEEe-ecCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQ--LSFQ---DKAYTVE-ELTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~--~g~~--~~~~---~~~~~v~-~~~~~~~~~~DvVf~a~ 109 (376)
.+||+|+|+ |.+|..++..|... +.+ +++.+--... .|.. +... .....+. ..+.+++.++|+||.+.
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~--g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~~~daDiVIita 97 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMK--DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITA 97 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHH--CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCSCSSCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHHhCCCCEEEEeC
Confidence 479999999 99999999988876 332 5655432111 1110 0000 0111222 23455689999999987
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
|.
T Consensus 98 G~ 99 (330)
T 3ldh_A 98 GA 99 (330)
T ss_dssp SC
T ss_pred CC
Confidence 65
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.39 Score=50.85 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=56.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cc--e---------eeecC----------cceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK--Q---------LSFQD----------KAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~--~---------~~~~~----------~~~~v~~~~ 95 (376)
.+||+|||+ |.+|..+...|...+| ++... +++.. .+ . +..+. ..+... .+
T Consensus 314 i~kV~VIGa-G~MG~~iA~~la~aG~---~V~l~-D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d 387 (715)
T 1wdk_A 314 VKQAAVLGA-GIMGGGIAYQSASKGT---PILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT-LS 387 (715)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTC---CEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE-SS
T ss_pred CCEEEEECC-ChhhHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE-CC
Confidence 468999998 9999999999988755 45433 32211 00 0 00000 012222 23
Q ss_pred ccCCCCCcEEEEcCCCchh--hhhHHHHH---hCCCeEEEcCCCCC
Q 017153 96 EDSFDGVDIALFSAGGSIS--KKFGPIAV---EKGSIVVDNSSAFR 136 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s--~~~~~~~~---~~G~~VIDlS~~~R 136 (376)
.+.+.++|+||+|++.... .+...++. ..++.++++++.+-
T Consensus 388 ~~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~ 433 (715)
T 1wdk_A 388 YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS 433 (715)
T ss_dssp STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred HHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCC
Confidence 4556799999999997653 23333332 35788889988763
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.9 Score=43.08 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCC--ceeeecCcceEEe-ecCccCC--CCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAG--KQLSFQDKAYTVE-ELTEDSF--DGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g--~~~~~~~~~~~v~-~~~~~~~--~~~DvVf~a~~~~ 112 (376)
++||.++|. |-+|.. +.++|.++++ ++...-.+.... +.+... .+.+. ..+++.+ .++|+|+...+-.
T Consensus 4 ~~~i~~iGi-Gg~Gms~~A~~L~~~G~---~V~~~D~~~~~~~~~~L~~~--gi~v~~g~~~~~l~~~~~d~vV~Spgi~ 77 (326)
T 3eag_A 4 MKHIHIIGI-GGTFMGGLAAIAKEAGF---EVSGCDAKMYPPMSTQLEAL--GIDVYEGFDAAQLDEFKADVYVIGNVAK 77 (326)
T ss_dssp CCEEEEESC-CSHHHHHHHHHHHHTTC---EEEEEESSCCTTHHHHHHHT--TCEEEESCCGGGGGSCCCSEEEECTTCC
T ss_pred CcEEEEEEE-CHHHHHHHHHHHHhCCC---EEEEEcCCCCcHHHHHHHhC--CCEEECCCCHHHcCCCCCCEEEECCCcC
Confidence 478999999 889996 8888888743 555433222111 111111 23333 3345555 4789999876655
Q ss_pred hhhhhHHHHHhCCCeEEE
Q 017153 113 ISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VID 130 (376)
.......++.++|+.|+.
T Consensus 78 ~~~p~~~~a~~~gi~v~~ 95 (326)
T 3eag_A 78 RGMDVVEAILNLGLPYIS 95 (326)
T ss_dssp TTCHHHHHHHHTTCCEEE
T ss_pred CCCHHHHHHHHcCCcEEe
Confidence 555566777889999984
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=90.21 E-value=0.41 Score=41.30 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=25.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
||||.|.|+||++|+.+++.|. ++ .++..+.
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g---~~V~~~~ 33 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KK---AEVITAG 33 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TT---SEEEEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CC---CeEEEEe
Confidence 4789999999999999999998 74 3565443
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.17 E-value=0.25 Score=46.25 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=26.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.||||++|+.|++.|.+++ .+++++.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~ 32 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQG---IDLIVFD 32 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred cEEEEeCCCchhHHHHHHHHHhCC---CEEEEEe
Confidence 689999999999999999998863 4676654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=90.02 E-value=0.48 Score=44.85 Aligned_cols=69 Identities=22% Similarity=0.392 Sum_probs=41.5
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCc--eeee----cCcceEEee-cCccCCCCCcEEEEcCCC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGK--QLSF----QDKAYTVEE-LTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~--~~~~----~~~~~~v~~-~~~~~~~~~DvVf~a~~~ 111 (376)
||+|+|| |.+|..++..|...++ -+++.+--... .|. .+.. ......+.. .+.+++.++|+|+.+.+.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l--~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGY--DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTC--SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHHhCCCCEEEEeCCC
Confidence 6999999 9999999988876533 24655432211 111 0000 011333443 345678999999999765
Q ss_pred c
Q 017153 112 S 112 (376)
Q Consensus 112 ~ 112 (376)
.
T Consensus 78 ~ 78 (308)
T 2d4a_B 78 G 78 (308)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=89.86 E-value=0.5 Score=43.28 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=54.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC---------------CCCCceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~---------------~~~g~~~~~--------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.++++.|...+ .-++..+-.. +..|+.-.. ....+.+..
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~G--vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAG--VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTT--CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcC--CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 479999999 778999999998863 3355544211 111221110 011223322
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSS 133 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~ 133 (376)
++.+ .+.++|+|+.|++...++....++ .+.|..+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~ 151 (251)
T 1zud_1 105 QRLTGEALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASA 151 (251)
T ss_dssp SCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 1211 135789999999987776665544 467888887653
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.29 Score=47.01 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=26.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|+||++|+.|++.|++++ .+++++.
T Consensus 11 ~~~vlVTG~tGfIG~~l~~~L~~~G---~~V~~~~ 42 (404)
T 1i24_A 11 GSRVMVIGGDGYCGWATALHLSKKN---YEVCIVD 42 (404)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhCC---CeEEEEE
Confidence 5899999999999999999998864 3666553
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=0.25 Score=47.26 Aligned_cols=88 Identities=10% Similarity=0.232 Sum_probs=52.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-----CCceeeecCcceE-Eeec---C-ccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-----AGKQLSFQDKAYT-VEEL---T-EDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-----~g~~~~~~~~~~~-v~~~---~-~~~~~~~DvVf~a 108 (376)
..+|.|+|++..+|+-+.++|.+. ..++. +..++. .+..+........ +... + .+.+.++|+||.|
T Consensus 177 gk~vvVIG~G~iVG~~~A~~L~~~---gAtVt-v~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsA 252 (320)
T 1edz_A 177 GKKCIVINRSEIVGRPLAALLAND---GATVY-SVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 252 (320)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTT---SCEEE-EECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCEEEEECCCcchHHHHHHHHHHC---CCEEE-EEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEEC
Confidence 479999999657899999999886 34544 333220 0111110000010 1101 1 1234689999999
Q ss_pred CCCc---hhhhhHHHHHhCCCeEEEcCCC
Q 017153 109 AGGS---ISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 109 ~~~~---~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
++.. ...++. +.|+.|||++.+
T Consensus 253 tg~p~~vI~~e~v----k~GavVIDVgi~ 277 (320)
T 1edz_A 253 VPSENYKFPTEYI----KEGAVCINFACT 277 (320)
T ss_dssp CCCTTCCBCTTTS----CTTEEEEECSSS
T ss_pred CCCCcceeCHHHc----CCCeEEEEcCCC
Confidence 9874 455553 569999999886
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=89.78 E-value=0.37 Score=44.11 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC---------------CCCceeee--------cCcceEEee--
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR---------------SAGKQLSF--------QDKAYTVEE-- 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~---------------~~g~~~~~--------~~~~~~v~~-- 93 (376)
..||.|+|+ |-+|.++++.|...+ .-++..+.... ..|+.-.. ....+.+..
T Consensus 31 ~~~VlVvG~-Gg~G~~va~~La~~G--v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 107 (249)
T 1jw9_B 31 DSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 107 (249)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCeEEEEee-CHHHHHHHHHHHHcC--CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence 479999998 999999999998753 23555443211 11211100 001122221
Q ss_pred --cCcc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcC
Q 017153 94 --LTED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (376)
Q Consensus 94 --~~~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS 132 (376)
++.+ .+.++|+|+.|++...+......+ .+.|+.+|+.+
T Consensus 108 ~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 108 ALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp SCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 2211 135899999999987776655544 45788888764
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=0.36 Score=43.21 Aligned_cols=32 Identities=9% Similarity=0.242 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+++.|.+++ .+++++.
T Consensus 7 ~k~vlVTGasggiG~~~a~~l~~~G---~~V~~~~ 38 (258)
T 3afn_B 7 GKRVLITGSSQGIGLATARLFARAG---AKVGLHG 38 (258)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEC
Confidence 4689999999999999999999863 3665544
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=0.17 Score=48.62 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=50.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCchh-hh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS-KK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s-~~ 116 (376)
.++|+|+|. |.+|+.+++.|... .+++.+.. ++.. +... .. ..... +.++ +.++|+|++|+|.... ..
T Consensus 146 g~~vgIiG~-G~IG~~~A~~l~~~---G~~V~~~d-~~~~-~~~~-~~--~~~~~-~l~ell~~aDvV~l~~p~~~~t~~ 215 (333)
T 1j4a_A 146 DQVVGVVGT-GHIGQVFMQIMEGF---GAKVITYD-IFRN-PELE-KK--GYYVD-SLDDLYKQADVISLHVPDVPANVH 215 (333)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-SSCC-HHHH-HT--TCBCS-CHHHHHHHCSEEEECSCCCGGGTT
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHC---CCEEEEEC-CCcc-hhHH-hh--CeecC-CHHHHHhhCCEEEEcCCCcHHHHH
Confidence 379999998 99999999999875 35665443 3221 1110 00 11110 2222 4689999999997542 22
Q ss_pred hH--H--HHHhCCCeEEEcCC
Q 017153 117 FG--P--IAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~--~--~~~~~G~~VIDlS~ 133 (376)
.. . ...+.|+.+|+.+.
T Consensus 216 li~~~~l~~mk~ga~lIn~ar 236 (333)
T 1j4a_A 216 MINDESIAKMKQDVVIVNVSR 236 (333)
T ss_dssp CBSHHHHHHSCTTEEEEECSC
T ss_pred HHhHHHHhhCCCCcEEEECCC
Confidence 11 1 22356778887654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=89.71 E-value=0.36 Score=43.22 Aligned_cols=42 Identities=14% Similarity=0.312 Sum_probs=30.5
Q ss_pred ceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 27 ~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|+....|++. .++|.|.|+||.+|+.+++.|.+++ .+++++.
T Consensus 1 m~~~~~~~~~--~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~ 42 (255)
T 1fmc_A 1 MFNSDNLRLD--GKCAIITGAGAGIGKEIAITFATAG---ASVVVSD 42 (255)
T ss_dssp CCCGGGGCCT--TCEEEETTTTSHHHHHHHHHHHTTT---CEEEEEE
T ss_pred CCCccCCCCC--CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEc
Confidence 4444445443 4789999999999999999999863 4665443
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.4 Score=43.78 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=35.3
Q ss_pred cccccCCCCCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 15 SKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
-++|...|...++. ...|++ +.++|.|.|++|.+|+.+++.|.+++ .+++.+.
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~l--~~k~vlITGasggIG~~la~~L~~~G---~~V~~~~ 65 (279)
T 3ctm_A 13 GPLPTKAPTLSKNV-LDLFSL--KGKVASVTGSSGGIGWAVAEAYAQAG---ADVAIWY 65 (279)
T ss_dssp CSSSCCCCCCCSSG-GGGGCC--TTCEEEETTTTSSHHHHHHHHHHHHT---CEEEEEE
T ss_pred cCCCCCcccccccc-ccccCC--CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 45666655444433 122333 34789999999999999999998863 3565544
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.13 Score=51.60 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=44.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceE-Eee--cCcc-----CCCCCcEEEEcC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYT-VEE--LTED-----SFDGVDIALFSA 109 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~-v~~--~~~~-----~~~~~DvVf~a~ 109 (376)
++|||-|+|+ |.+|..|.+.|.+. ..+++.+-.....-+.+... -++. +.. .+++ ...++|+++.+|
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~---~~~v~vId~d~~~~~~~~~~-~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGE---NNDITIVDKDGDRLRELQDK-YDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCST---TEEEEEEESCHHHHHHHHHH-SSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHC---CCCEEEEECCHHHHHHHHHh-cCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 4699999999 99999999999875 34677664322111111111 0222 221 2222 246899999999
Q ss_pred CCchh
Q 017153 110 GGSIS 114 (376)
Q Consensus 110 ~~~~s 114 (376)
+.+..
T Consensus 77 ~~De~ 81 (461)
T 4g65_A 77 NTDET 81 (461)
T ss_dssp SCHHH
T ss_pred CChHH
Confidence 98754
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=0.15 Score=50.22 Aligned_cols=84 Identities=21% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeecCcceEEeecCccCCCCCcEEEEcCC------
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAG------ 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~------ 110 (376)
...||.|+|++|.+|...++.+...+.+...+..+--+. ..|.. .+.+.++|+||-|..
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~--------------~~~i~~aDivIn~vlig~~aP 278 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP--------------FDEIPQADIFINCIYLSKPIA 278 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC--------------CTHHHHSSEEEECCCCCSSCC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc--------------hhhHhhCCEEEECcCcCCCCC
Confidence 357999999999999999999988743322343331110 11111 123457899999864
Q ss_pred CchhhhhHHHHHhCCCeEEEcCCCC
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.-++++.++..-+.|..|||+|.|-
T Consensus 279 ~Lvt~e~v~~m~k~gsVIVDVA~D~ 303 (394)
T 2qrj_A 279 PFTNMEKLNNPNRRLRTVVDVSADT 303 (394)
T ss_dssp CSCCHHHHCCTTCCCCEEEETTCCT
T ss_pred cccCHHHHhcCcCCCeEEEEEecCC
Confidence 4455655554336789999999874
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.51 E-value=0.93 Score=40.88 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=26.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+..++-|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G---~~V~~~~ 38 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAAVTRMLAQEG---ATVLGLD 38 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 34789999999999999999999863 4665443
|
| >1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A | Back alignment and structure |
|---|
Probab=89.47 E-value=0.37 Score=47.15 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRS 77 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~ 77 (376)
+.+|.|+|+||-||.+-++.+.++ |+ +++++++..++
T Consensus 9 ~k~i~ILGSTGSIGtqtLdVi~~~--pd~f~V~aL~ag~n 46 (406)
T 1q0q_A 9 MKQLTILGSTGSIGCSTLDVVRHN--PEHFRVVALVAGKN 46 (406)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC--TTTEEEEEEEESSC
T ss_pred ceeEEEEccCcHHHHHHHHHHHhC--CCccEEEEEEcCCC
Confidence 479999999999999999999987 76 99999875443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=89.41 E-value=0.21 Score=48.24 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=51.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecCc----cCCCCCcEEEEcCCCch-
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTE----DSFDGVDIALFSAGGSI- 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~----~~~~~~DvVf~a~~~~~- 113 (376)
.+|.|+|+ |-+|+.+++.+... .. ++.++..+...-+.+.. ....+.+...+. +.+.++|+||.|++...
T Consensus 168 ~~VlViGa-GgvG~~aa~~a~~~--Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGG-GVVGTEAAKMAVGL--GA-QVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TC-EEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CEEEEECC-CHHHHHHHHHHHhC--CC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 79999999 99999999999876 33 66544322111011110 111121111111 12358999999997643
Q ss_pred ------hhhhHHHHHhCCCeEEEcCCC
Q 017153 114 ------SKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 114 ------s~~~~~~~~~~G~~VIDlS~~ 134 (376)
..+.. ...+.|..|||++.+
T Consensus 244 ~~~~li~~~~~-~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 RAPILVPASLV-EQMRTGSVIVDVAVD 269 (361)
T ss_dssp SCCCCBCHHHH-TTSCTTCEEEETTCT
T ss_pred CCCeecCHHHH-hhCCCCCEEEEEecC
Confidence 22222 223578899999865
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.37 E-value=0.32 Score=44.51 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+++.|.+++ .+++++.
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G---~~V~~~~ 62 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLK---SKLVLWD 62 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 4789999999999999999999863 4565443
|
| >2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A | Back alignment and structure |
|---|
Probab=89.29 E-value=0.4 Score=46.79 Aligned_cols=88 Identities=20% Similarity=0.214 Sum_probs=54.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEec-CCCCCceee----ecCc-------------ceEEe-ecC-ccC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLAS-KRSAGKQLS----FQDK-------------AYTVE-ELT-EDS 98 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s-~~~~g~~~~----~~~~-------------~~~v~-~~~-~~~ 98 (376)
.||.|+|+||-||.+-++.+.++ |+ +++++++. .+....... +.-+ ...+. ..+ ..+
T Consensus 22 k~i~ILGSTGSIGtqtLdVi~~~--pd~f~V~aLaa~g~nv~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~l~~ 99 (398)
T 2y1e_A 22 LRVVVLGSTGSIGTQALQVIADN--PDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDAATR 99 (398)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHC--TTTEEEEEEEECSSCHHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTHHHH
T ss_pred eEEEEEccCcHHHHHHHHHHHhC--CCceEEEEEEecCCCHHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHHHHH
Confidence 67999999999999999999987 76 99998875 443322111 1100 00110 101 001
Q ss_pred ---CCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 99 ---FDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 99 ---~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
..++|+|+.|.-......-.-.++++|.+|-
T Consensus 100 ~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~ia 133 (398)
T 2y1e_A 100 LVEQTEADVVLNALVGALGLRPTLAALKTGARLA 133 (398)
T ss_dssp HHHHSCCSEEEECCCSGGGHHHHHHHHHHTCEEE
T ss_pred HhcCCCCCEEEEeCcCHHHHHHHHHHHHCCCceE
Confidence 2468999999877655443445567786654
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.1 Score=51.26 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=39.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC-CCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~ 113 (376)
.++|||+|. |.+|+.+.+.|... .+++.+.. +... ....+ ... .+.++ +.++|+|++|+|...
T Consensus 116 g~tvGIIGl-G~IG~~vA~~l~~~---G~~V~~~d-~~~~--~~~~g---~~~--~~l~ell~~aDvV~l~~Plt~ 179 (380)
T 2o4c_A 116 ERTYGVVGA-GQVGGRLVEVLRGL---GWKVLVCD-PPRQ--AREPD---GEF--VSLERLLAEADVISLHTPLNR 179 (380)
T ss_dssp GCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC-HHHH--HHSTT---SCC--CCHHHHHHHCSEEEECCCCCS
T ss_pred CCEEEEEeC-CHHHHHHHHHHHHC---CCEEEEEc-CChh--hhccC---ccc--CCHHHHHHhCCEEEEeccCcc
Confidence 479999998 99999999999874 45665442 2110 00000 111 12222 468999999998765
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.3 Score=45.14 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+++.|.+++ .+++++.
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G---~~V~~~~ 57 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLG---AQCVIAS 57 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4789999999999999999999863 3665443
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.13 E-value=0.41 Score=45.58 Aligned_cols=88 Identities=9% Similarity=-0.002 Sum_probs=52.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKKF 117 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~~~ 117 (376)
.-+|.|+|+ |-+|...++++... ..++.++......-......+.+..+ .+++.+ .++|+||+|++...+.+.
T Consensus 177 g~~VlV~Ga-G~vG~~a~qla~~~---Ga~Vi~~~~~~~~~~~~~~lGa~~v~--~~~~~~~~~~D~vid~~g~~~~~~~ 250 (348)
T 3two_A 177 GTKVGVAGF-GGLGSMAVKYAVAM---GAEVSVFARNEHKKQDALSMGVKHFY--TDPKQCKEELDFIISTIPTHYDLKD 250 (348)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHT---TCEEEEECSSSTTHHHHHHTTCSEEE--SSGGGCCSCEEEEEECCCSCCCHHH
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHhcCCCeec--CCHHHHhcCCCEEEECCCcHHHHHH
Confidence 479999998 99999999988765 34666554322111111111223333 233333 389999999998744444
Q ss_pred HHHHHhCCCeEEEcC
Q 017153 118 GPIAVEKGSIVVDNS 132 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS 132 (376)
+-+++..|.+++..+
T Consensus 251 ~~~~l~~~G~iv~~G 265 (348)
T 3two_A 251 YLKLLTYNGDLALVG 265 (348)
T ss_dssp HHTTEEEEEEEEECC
T ss_pred HHHHHhcCCEEEEEC
Confidence 444455666777654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=0.16 Score=49.55 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=50.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee-cCcceEEeecC---c-cCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELT---E-DSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~-~~~~~~v~~~~---~-~~~~~~DvVf~a~~~~ 112 (376)
..+|+|+|+ |.+|+.+++.+... . .++.++. ++..- +.... .+..+.+...+ . +.+.++|+||.|++..
T Consensus 168 g~~V~ViG~-G~iG~~~a~~a~~~--G-a~V~~~d-~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p 242 (377)
T 2vhw_A 168 PADVVVIGA-GTAGYNAARIANGM--G-ATVTVLD-INIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVP 242 (377)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--T-CEEEEEE-SCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--C-CEEEEEe-CCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcC
Confidence 479999999 99999999999875 3 3655443 22110 00100 11111111101 1 1235799999998543
Q ss_pred h-------hhhhHHHHHhCCCeEEEcCCC
Q 017153 113 I-------SKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~-------s~~~~~~~~~~G~~VIDlS~~ 134 (376)
. ..+..+ ..+.|..+||.+.+
T Consensus 243 ~~~t~~li~~~~l~-~mk~g~~iV~va~~ 270 (377)
T 2vhw_A 243 GAKAPKLVSNSLVA-HMKPGAVLVDIAID 270 (377)
T ss_dssp TSCCCCCBCHHHHT-TSCTTCEEEEGGGG
T ss_pred CCCCcceecHHHHh-cCCCCcEEEEEecC
Confidence 2 222222 23568899999854
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=89.00 E-value=0.79 Score=44.13 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=55.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----C-----------CCCCceeee--------cCcceEEeec-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----K-----------RSAGKQLSF--------QDKAYTVEEL- 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~-----------~~~g~~~~~--------~~~~~~v~~~- 94 (376)
..||.|+|+ |-+|.++++.|...+ .-++..+-. . +..|+.-.. ....+.+...
T Consensus 36 ~~~VlivG~-GGlG~~ia~~La~~G--vg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 112 (346)
T 1y8q_A 36 ASRVLLVGL-KGLGAEIAKNLILAG--VKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT 112 (346)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcC--CCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence 479999999 888999999888753 335554421 1 122322111 0112233221
Q ss_pred -C-----ccCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEc
Q 017153 95 -T-----EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDN 131 (376)
Q Consensus 95 -~-----~~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDl 131 (376)
. .+.+.++|+|++|+....++.+...+ .+.|+.+|+.
T Consensus 113 ~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 113 EDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp SCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1 11247899999999988777666654 4678888875
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=88.81 E-value=0.41 Score=44.29 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.||||++|+.|++.|++++ .+++++.
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~ 32 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENG---YSVNTTI 32 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CEEEEECChhHHHHHHHHHHHHCC---CEEEEEE
Confidence 589999999999999999998864 3666544
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=0.95 Score=40.54 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=25.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.|++|.+|+++++.|.+++ .+++.+.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~ 32 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAG---HQIVGID 32 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 479999999999999999998863 3665443
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=88.70 E-value=0.28 Score=48.02 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=23.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..||+|+|+ |.+|...++.+...+ .++.++
T Consensus 184 ~~kV~ViG~-G~iG~~aa~~a~~lG---a~V~v~ 213 (381)
T 3p2y_A 184 PASALVLGV-GVAGLQALATAKRLG---AKTTGY 213 (381)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHHT---CEEEEE
T ss_pred CCEEEEECc-hHHHHHHHHHHHHCC---CEEEEE
Confidence 479999999 999999999988752 365543
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=88.65 E-value=0.85 Score=47.18 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=58.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCC-----------CCceeee--------cCcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRS-----------AGKQLSF--------QDKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~-----------~g~~~~~--------~~~~~~v~~~~ 95 (376)
..||.|+|+ |-+|.++++.|... ..-++..+-. .+. .|+.-.. ....+.+....
T Consensus 327 ~~kVLIVGa-GGLGs~va~~La~a--GVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~ 403 (598)
T 3vh1_A 327 NTKVLLLGA-GTLGCYVSRALIAW--GVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK 403 (598)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT--TCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHc--CCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEe
Confidence 479999999 99999999999986 3345655521 111 2221111 01123332211
Q ss_pred -------------------cc----CCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCC
Q 017153 96 -------------------ED----SFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 96 -------------------~~----~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~ 138 (376)
.+ .+.++|+||.|++...++.....+ ...|..+|+. .++++
T Consensus 404 ~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~plI~a--a~G~~ 468 (598)
T 3vh1_A 404 LSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA--ALGFD 468 (598)
T ss_dssp CCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCEEEEE--EECSS
T ss_pred ccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCCEEEE--EECCc
Confidence 01 135789999999999887666554 4678888874 35543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=0.64 Score=46.23 Aligned_cols=88 Identities=13% Similarity=0.209 Sum_probs=52.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC------CCc-eeeec-----------CcceEEeecCccCCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGK-QLSFQ-----------DKAYTVEELTEDSFDG 101 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~------~g~-~~~~~-----------~~~~~v~~~~~~~~~~ 101 (376)
-|.-|+|. ||+|.-+...|++++| ++..+.-... .|. ++.+. ...+.+.. ++.+
T Consensus 12 ~~~~ViGl-GyvGlp~A~~La~~G~---~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt----d~~~ 83 (431)
T 3ojo_A 12 SKLTVVGL-GYIGLPTSIMFAKHGV---DVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST----TPEA 83 (431)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTC---EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES----SCCC
T ss_pred CccEEEee-CHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC----chhh
Confidence 57899998 9999999999998744 6665532111 111 11110 01122221 2458
Q ss_pred CcEEEEcCCCchhhh------------hHHHH---HhCCCeEEEcCCCC
Q 017153 102 VDIALFSAGGSISKK------------FGPIA---VEKGSIVVDNSSAF 135 (376)
Q Consensus 102 ~DvVf~a~~~~~s~~------------~~~~~---~~~G~~VIDlS~~~ 135 (376)
+|++|.|+|+....+ ....+ +..|..|||.|.-.
T Consensus 84 aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~ 132 (431)
T 3ojo_A 84 SDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIA 132 (431)
T ss_dssp CSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCC
T ss_pred CCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 999999999865321 11222 24688899988654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=88.54 E-value=0.3 Score=45.51 Aligned_cols=87 Identities=15% Similarity=0.279 Sum_probs=51.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh--
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK-- 116 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~-- 116 (376)
.+|.|+|+ |-+|+.++..|...+ .-++. +.+|+. ..+.+.... ...+.. +.. ..++|+|+.|+|.+....
T Consensus 120 ~~vlvlGa-Ggaarav~~~L~~~G--~~~i~-v~nRt~~ka~~la~~~-~~~~~~-~~~-~~~~DivInaTp~gm~~~~~ 192 (271)
T 1npy_A 120 AKVIVHGS-GGMAKAVVAAFKNSG--FEKLK-IYARNVKTGQYLAALY-GYAYIN-SLE-NQQADILVNVTSIGMKGGKE 192 (271)
T ss_dssp SCEEEECS-STTHHHHHHHHHHTT--CCCEE-EECSCHHHHHHHHHHH-TCEEES-CCT-TCCCSEEEECSSTTCTTSTT
T ss_pred CEEEEECC-cHHHHHHHHHHHHCC--CCEEE-EEeCCHHHHHHHHHHc-CCccch-hhh-cccCCEEEECCCCCccCccc
Confidence 68999998 888999999998763 22444 444431 111111100 012221 111 457999999999876421
Q ss_pred -----hHHHHHhCCCeEEEcCC
Q 017153 117 -----FGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 117 -----~~~~~~~~G~~VIDlS~ 133 (376)
.....+..+..|+|+.-
T Consensus 193 ~~~~~~~~~~l~~~~~v~DlvY 214 (271)
T 1npy_A 193 EMDLAFPKAFIDNASVAFDVVA 214 (271)
T ss_dssp TTSCSSCHHHHHHCSEEEECCC
T ss_pred cCCCCCCHHHcCCCCEEEEeec
Confidence 22344556888999874
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=88.48 E-value=0.16 Score=49.96 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=51.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeec-Cc-cCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEEL-TE-DSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~-~~-~~~~~~DvVf~a~~~~~s~ 115 (376)
..+|+|+|+ |-+|+.+++.|... ..-++.++ +++.. .+.+.... ...+... +. +.+.++|+||.|+|.....
T Consensus 167 g~~VlIiGa-G~iG~~~a~~l~~~--G~~~V~v~-~r~~~ra~~la~~~-g~~~~~~~~l~~~l~~aDvVi~at~~~~~~ 241 (404)
T 1gpj_A 167 DKTVLVVGA-GEMGKTVAKSLVDR--GVRAVLVA-NRTYERAVELARDL-GGEAVRFDELVDHLARSDVVVSATAAPHPV 241 (404)
T ss_dssp TCEEEEESC-CHHHHHHHHHHHHH--CCSEEEEE-CSSHHHHHHHHHHH-TCEECCGGGHHHHHHTCSEEEECCSSSSCC
T ss_pred CCEEEEECh-HHHHHHHHHHHHHC--CCCEEEEE-eCCHHHHHHHHHHc-CCceecHHhHHHHhcCCCEEEEccCCCCce
Confidence 479999998 99999999999875 22255544 33211 00111100 0111111 11 1235899999999876542
Q ss_pred ---hhHHH-HHh----CCCeEEEcCCC
Q 017153 116 ---KFGPI-AVE----KGSIVVDNSSA 134 (376)
Q Consensus 116 ---~~~~~-~~~----~G~~VIDlS~~ 134 (376)
+.... +.+ .+..+||++.+
T Consensus 242 ~~~~~l~~~~lk~r~~~~~v~vdia~P 268 (404)
T 1gpj_A 242 IHVDDVREALRKRDRRSPILIIDIANP 268 (404)
T ss_dssp BCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred ecHHHHHHHHHhccCCCCEEEEEccCC
Confidence 33333 322 45778998753
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=88.39 E-value=0.54 Score=43.00 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+++.|.+++ .+++.+.
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G---~~V~~~~ 36 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAG---DTVIGTA 36 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 4789999999999999999999863 4665544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.38 E-value=0.2 Score=49.57 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=24.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
..||+|+|+ |.+|...++.+...+ .++.++
T Consensus 190 ~~kV~ViG~-G~iG~~aa~~a~~lG---a~V~v~ 219 (405)
T 4dio_A 190 AAKIFVMGA-GVAGLQAIATARRLG---AVVSAT 219 (405)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT---CEEEEE
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC---CEEEEE
Confidence 479999999 999999999998763 355433
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=88.33 E-value=0.44 Score=44.55 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|+|.|.||||++|+.+++.|.+++ .+++++.
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G---~~V~~~~ 31 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVIILD 31 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 589999999999999999998864 3666553
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=88.13 E-value=0.7 Score=42.51 Aligned_cols=55 Identities=11% Similarity=0.192 Sum_probs=29.2
Q ss_pred ccccccCCCCCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 14 ISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.-.||.-.|-..||-..-.|++. .+++.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 9 ~~~~~~~~~g~~~m~~~~~~~l~--gk~~lVTGas~GIG~aia~~la~~G---~~V~~~~ 63 (276)
T 3r1i_A 9 MGTLEAQTQGPGSMSVLDLFDLS--GKRALITGASTGIGKKVALAYAEAG---AQVAVAA 63 (276)
T ss_dssp --------------CGGGGGCCT--TCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred ccceeccccCCCCcccccccCCC--CCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 34566655555555433333433 3789999999999999999999863 4665443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=0.49 Score=46.74 Aligned_cols=88 Identities=11% Similarity=0.058 Sum_probs=49.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-Ccc-----CCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TED-----SFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~~~-----~~~~~DvVf~a~~~~ 112 (376)
+++|.|+|+ |.+|+.+.+.|.++++ +++++......-+.+...+..+..-+. +++ .+.++|+|+.|++..
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~---~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~ 79 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGV---KMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP 79 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTC---CEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSH
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCCh
Confidence 478999999 9999999999998644 566554321110011111111111121 221 246899999999986
Q ss_pred hhhhhH-HHHHh--CCCeEEE
Q 017153 113 ISKKFG-PIAVE--KGSIVVD 130 (376)
Q Consensus 113 ~s~~~~-~~~~~--~G~~VID 130 (376)
..-..+ ..+.+ ...+||-
T Consensus 80 ~~n~~i~~~ar~~~p~~~Iia 100 (413)
T 3l9w_A 80 QTNLQLTEMVKEHFPHLQIIA 100 (413)
T ss_dssp HHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCCeEEE
Confidence 543332 22223 2346664
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=88.04 E-value=0.3 Score=45.49 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=42.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--cC----c---ceEEeecCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--QD----K---AYTVEELTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--~~----~---~~~v~~~~~~~~~~~DvVf~a 108 (376)
..++.|+|+ |-+|+.+++.|.+. . ++..+ +++. ..+.+.. .. . .+.+.++ .+.+.++|+++.|
T Consensus 128 ~k~vlV~Ga-GgiG~aia~~L~~~--G--~V~v~-~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~~~~~~~DilVn~ 200 (287)
T 1nvt_A 128 DKNIVIYGA-GGAARAVAFELAKD--N--NIIIA-NRTVEKAEALAKEIAEKLNKKFGEEVKFSGL-DVDLDGVDIIINA 200 (287)
T ss_dssp SCEEEEECC-SHHHHHHHHHHTSS--S--EEEEE-CSSHHHHHHHHHHHHHHHTCCHHHHEEEECT-TCCCTTCCEEEEC
T ss_pred CCEEEEECc-hHHHHHHHHHHHHC--C--CEEEE-ECCHHHHHHHHHHHhhhcccccceeEEEeeH-HHhhCCCCEEEEC
Confidence 368999999 69999999999986 3 66543 4331 1111110 00 0 1222222 3446789999999
Q ss_pred CCCchh
Q 017153 109 AGGSIS 114 (376)
Q Consensus 109 ~~~~~s 114 (376)
+|....
T Consensus 201 ag~~~~ 206 (287)
T 1nvt_A 201 TPIGMY 206 (287)
T ss_dssp SCTTCT
T ss_pred CCCCCC
Confidence 987653
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=87.87 E-value=0.59 Score=41.54 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=27.0
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+.++|.|.|+||.+|+.+++.|.+++ .+++.+.
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G---~~V~~~~ 38 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAG---STVIITG 38 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 345789999999999999999998863 3665543
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=87.84 E-value=0.24 Score=49.42 Aligned_cols=105 Identities=15% Similarity=0.231 Sum_probs=60.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec----CCC-----------CCceeee--------cCcc--eEEee
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRS-----------AGKQLSF--------QDKA--YTVEE 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s----~~~-----------~g~~~~~--------~~~~--~~v~~ 93 (376)
..||.|+|+ |-+|.+++..|...+.. ++..+-. .+. .|+.-.. .... +....
T Consensus 40 ~~~VlvvG~-GGlGs~va~~La~aGvg--~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~ 116 (434)
T 1tt5_B 40 TCKVLVIGA-GGLGCELLKNLALSGFR--QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 116 (434)
T ss_dssp TCCEEEECS-STHHHHHHHHHHHTTCC--CEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHcCCC--EEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence 478999999 88999999999887444 4443321 111 2221110 0111 22221
Q ss_pred --cCc---cCCCCCcEEEEcCCCchhhhhHHHHH-h------------CCCeEEEcCCCCCCCCCCcEEeec
Q 017153 94 --LTE---DSFDGVDIALFSAGGSISKKFGPIAV-E------------KGSIVVDNSSAFRMVENVPLVIPE 147 (376)
Q Consensus 94 --~~~---~~~~~~DvVf~a~~~~~s~~~~~~~~-~------------~G~~VIDlS~~~R~~~~~~~~lpe 147 (376)
++. +.+.++|+|++|++...++.+...+. . .++..|+.+. .++...+...+|+
T Consensus 117 ~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~-~g~~G~v~v~~p~ 187 (434)
T 1tt5_B 117 NKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGT-EGFKGNARVILPG 187 (434)
T ss_dssp SCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEE-ETTEEEEEEECTT
T ss_pred cccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEecc-ccceeEEEEECCC
Confidence 111 22478999999999988887777654 2 3778887543 3333323334554
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.80 E-value=0.51 Score=44.65 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.||||++|+.|++.|.+++ .+++++.
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~ 32 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKG---YEVHGIK 32 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEE
Confidence 689999999999999999998863 3666554
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=87.74 E-value=0.88 Score=42.96 Aligned_cols=70 Identities=13% Similarity=0.242 Sum_probs=41.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceee--e-cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLS--F-QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~--~-~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
++||+|+|| |.+|..+...|..+++ .-+++.+--.. ..|+... . ....+... .+.+++.++|+|+.+.+.
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~-~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t-~d~~~l~~aD~Vi~aag~ 87 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGI-ADRLVLLDLSEGTKGATMDLEIFNLPNVEIS-KDLSASAHSKVVIFTVNS 87 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECCC-----CHHHHHHHTCTTEEEE-SCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCcchHHHHHHHhhhcCCCeEEe-CCHHHHCCCCEEEEcCCC
Confidence 379999998 9999999887776532 23666543221 1122111 0 11233332 345668899999999754
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=87.52 E-value=1.4 Score=39.26 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSD 61 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~ 61 (376)
..+|-|.|++|.+|+.+++.|.+
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~ 27 (245)
T 3e9n_A 5 KKIAVVTGATGGMGIEIVKDLSR 27 (245)
T ss_dssp -CEEEEESTTSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCHHHHHHHHHHhC
Confidence 46899999999999999999976
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=87.22 E-value=0.69 Score=44.25 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=25.9
Q ss_pred CEEEEECcccHHHHHHHHHHh-cCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~-~~~~p~~~l~~v~ 73 (376)
|+|.|.||||++|+.|++.|. +++ .+++++.
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g---~~V~~~~ 34 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTN---HSVVIVD 34 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC---CEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCC---CEEEEEe
Confidence 689999999999999999998 763 4666654
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.21 E-value=1.5 Score=47.05 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=63.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHh-----cCCCCCeEEEEEecCCCCC--ceeeecCcc--eEEeecCccCC----CCCcE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLS-----DRDFPYRSIKMLASKRSAG--KQLSFQDKA--YTVEELTEDSF----DGVDI 104 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~-----~~~~p~~~l~~v~s~~~~g--~~~~~~~~~--~~v~~~~~~~~----~~~Dv 104 (376)
+..||.|.|+||. ++.++|. ++ +..++++.+++...| +.+.++... ++++. +..+. .++|+
T Consensus 495 ~~trviV~G~tg~---~~~~ml~~~~~~~~--~~~~vVa~V~P~~~g~~~~~~~G~~~~Gvp~y~-sv~ea~~~~p~~Dl 568 (829)
T 3pff_A 495 RHTKAIVWGMQTR---AVQGMLDFDYVCSR--DEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFK-NMADAMRKHPEVDV 568 (829)
T ss_dssp TTCCEEEESCCHH---HHHHHHHHHHHTTC--SSCSEEEEECTTSCSEEEEEEETTEEEEEEEES-SHHHHHHHCTTCCE
T ss_pred CCCeEEEECCcHH---HHHHHHHhcccccC--CCCcEEEEEcCCCCCccceEEecCCcCCcccCC-cHHHHhhccCCCcE
Confidence 4589999999977 5555554 23 556888888887775 344333332 44442 11221 26899
Q ss_pred EEEcCCCchhhhhHHHHHh-CCCe-EEEcCCCCC
Q 017153 105 ALFSAGGSISKKFGPIAVE-KGSI-VVDNSSAFR 136 (376)
Q Consensus 105 Vf~a~~~~~s~~~~~~~~~-~G~~-VIDlS~~~R 136 (376)
++.|+|.....+.+.++.+ +|++ +|-+|+-|.
T Consensus 569 aVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~ 602 (829)
T 3pff_A 569 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIP 602 (829)
T ss_dssp EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCC
T ss_pred EEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCC
Confidence 9999999999999999999 9988 555677773
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=87.19 E-value=0.22 Score=50.22 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=41.9
Q ss_pred CCEEEEECcccHH-HHHHHHHHhcC--CCCCeEEEEEecCCCC---C-----cee-eecCcceEEee-cCc-cCCCCCcE
Q 017153 39 APSVAVVGVTGAV-GQEFLSVLSDR--DFPYRSIKMLASKRSA---G-----KQL-SFQDKAYTVEE-LTE-DSFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~v-G~eLlr~L~~~--~~p~~~l~~v~s~~~~---g-----~~~-~~~~~~~~v~~-~~~-~~~~~~Dv 104 (376)
++||+|+|| |.+ |..|+..|..+ +.|.-+++++. .+.. + ..+ .....+..+.. .|. +++.++|+
T Consensus 28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~D-i~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~ 105 (472)
T 1u8x_X 28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYD-NDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF 105 (472)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEEC-SCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEe-CCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCE
Confidence 579999999 666 66677666554 44455666543 2210 0 000 00112334443 243 45789999
Q ss_pred EEEcCCCch
Q 017153 105 ALFSAGGSI 113 (376)
Q Consensus 105 Vf~a~~~~~ 113 (376)
|+.+.|...
T Consensus 106 VViaag~~~ 114 (472)
T 1u8x_X 106 VMAHIRVGK 114 (472)
T ss_dssp EEECCCTTH
T ss_pred EEEcCCCcc
Confidence 999998743
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.14 E-value=1.1 Score=41.06 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=26.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~ 40 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSG---ARVVICD 40 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 4689999999999999999999873 4665443
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=86.97 E-value=1.1 Score=40.38 Aligned_cols=36 Identities=11% Similarity=0.259 Sum_probs=27.6
Q ss_pred CCCCCCCEEEEECcccH--HHHHHHHHHhcCCCCCeEEEEE
Q 017153 34 SYQESAPSVAVVGVTGA--VGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 34 ~~~~~~irVaIvGaTG~--vG~eLlr~L~~~~~p~~~l~~v 72 (376)
++..+..++.|.|++|. +|+.+.+.|.+++ .+++.+
T Consensus 2 ~~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~ 39 (266)
T 3oig_A 2 NFSLEGRNIVVMGVANKRSIAWGIARSLHEAG---ARLIFT 39 (266)
T ss_dssp CSCCTTCEEEEECCCSTTSHHHHHHHHHHHTT---CEEEEE
T ss_pred ccccCCCEEEEEcCCCCCcHHHHHHHHHHHCC---CEEEEe
Confidence 33344578999999999 9999999999863 466544
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=86.84 E-value=1.6 Score=40.07 Aligned_cols=33 Identities=9% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+..++-|.|++|.+|+++.+.|.+++ .+++.+.
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G---~~V~~~~ 40 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADG---ANVALVA 40 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTT---CEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 34789999999999999999999863 4666544
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=86.65 E-value=1.1 Score=46.52 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----CC-----------CCceeee--------cCcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS-----------AGKQLSF--------QDKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~~-----------~g~~~~~--------~~~~~~v~~~~ 95 (376)
..||.|+|+ |-+|.++++.|... ..-++..+-.. +. .|+.-.. ....+.+....
T Consensus 326 ~arVLIVGa-GGLGs~vA~~La~a--GVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~ 402 (615)
T 4gsl_A 326 NTKVLLLGA-GTLGCYVSRALIAW--GVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK 402 (615)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHc--CCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEee
Confidence 479999999 99999999999886 34455544321 11 1221110 01123333211
Q ss_pred -------------------c----cCCCCCcEEEEcCCCchhhhhHHHH-HhCCCeEEEcCCCCCCC
Q 017153 96 -------------------E----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMV 138 (376)
Q Consensus 96 -------------------~----~~~~~~DvVf~a~~~~~s~~~~~~~-~~~G~~VIDlS~~~R~~ 138 (376)
. +.+.++|+||.|++...++.....+ ...|+.+|+.+ .+++
T Consensus 403 ~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa--lG~~ 467 (615)
T 4gsl_A 403 LSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA--LGFD 467 (615)
T ss_dssp CCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE--ECSS
T ss_pred ccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE--ccce
Confidence 0 1135799999999998887766654 46889999743 5554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=86.59 E-value=0.72 Score=41.12 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=40.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEe--ec-Ccc-----CCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVE--EL-TED-----SFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~--~~-~~~-----~~~~~DvVf~a~ 109 (376)
+.+|.|+|+ |.+|+.+++.|.+. .. ++++ .++.. -+.+. ....+. +. +++ .+.++|+||.|+
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~---g~-v~vi-d~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGS---EV-FVLA-EDENVRKKVLR---SGANFVHGDPTRVSDLEKANVRGARAVIVDL 79 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTS---EE-EEEE-SCGGGHHHHHH---TTCEEEESCTTCHHHHHHTTCTTCSEEEECC
T ss_pred CCEEEEECC-ChHHHHHHHHHHhC---Ce-EEEE-ECCHHHHHHHh---cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC
Confidence 478999999 99999999999875 33 4444 32211 01111 112221 11 111 256899999999
Q ss_pred CCchh
Q 017153 110 GGSIS 114 (376)
Q Consensus 110 ~~~~s 114 (376)
+.+..
T Consensus 80 ~~d~~ 84 (234)
T 2aef_A 80 ESDSE 84 (234)
T ss_dssp SCHHH
T ss_pred CCcHH
Confidence 98643
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.56 E-value=1 Score=40.29 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|-|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G---~~V~~~~ 40 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREG---AAVVVAD 40 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEc
Confidence 4789999999999999999999863 4665443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=86.55 E-value=0.31 Score=49.37 Aligned_cols=87 Identities=14% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecCccCCCCCcEEEEcCCCchhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK- 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~- 116 (376)
..+|+|+|+ |.+|+.+++.+...+ .++.++ +++..-.... ..+ ..+..+ .+.+.++|+||+|++....-.
T Consensus 274 GktV~IiG~-G~IG~~~A~~lka~G---a~Viv~-d~~~~~~~~A~~~G--a~~~~l-~e~l~~aDvVi~atgt~~~i~~ 345 (494)
T 3ce6_A 274 GKKVLICGY-GDVGKGCAEAMKGQG---ARVSVT-EIDPINALQAMMEG--FDVVTV-EEAIGDADIVVTATGNKDIIML 345 (494)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTT---CEEEEE-CSCHHHHHHHHHTT--CEECCH-HHHGGGCSEEEECSSSSCSBCH
T ss_pred cCEEEEEcc-CHHHHHHHHHHHHCC---CEEEEE-eCCHHHHHHHHHcC--CEEecH-HHHHhCCCEEEECCCCHHHHHH
Confidence 479999998 999999999998752 455443 3221100000 011 112111 122468999999998654221
Q ss_pred hHHHHHhCCCeEEEcCC
Q 017153 117 FGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~ 133 (376)
..-...+.|+.+|+.+.
T Consensus 346 ~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 346 EHIKAMKDHAILGNIGH 362 (494)
T ss_dssp HHHHHSCTTCEEEECSS
T ss_pred HHHHhcCCCcEEEEeCC
Confidence 12233467888887764
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=1.1 Score=42.95 Aligned_cols=91 Identities=14% Similarity=0.036 Sum_probs=53.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc------CC--CCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED------SF--DGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~------~~--~~~DvVf~a~~ 110 (376)
.-+|.|+|++|-+|...++++... ..+++++.+.+... .....+.+..+..-+.+ .+ .++|+||+|++
T Consensus 165 g~~VlV~Ga~G~vG~~a~qla~~~---Ga~Vi~~~~~~~~~-~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g 240 (371)
T 3gqv_A 165 PVYVLVYGGSTATATVTMQMLRLS---GYIPIATCSPHNFD-LAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCIT 240 (371)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT---TCEEEEEECGGGHH-HHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSC
T ss_pred CcEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCHHHHH-HHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCC
Confidence 368999999999999999988765 34666555322111 01111222222211111 01 25899999999
Q ss_pred CchhhhhHHHHH-hCCCeEEEcCC
Q 017153 111 GSISKKFGPIAV-EKGSIVVDNSS 133 (376)
Q Consensus 111 ~~~s~~~~~~~~-~~G~~VIDlS~ 133 (376)
...+.+.+-.++ ..|.+++.++.
T Consensus 241 ~~~~~~~~~~~l~~~~G~iv~~g~ 264 (371)
T 3gqv_A 241 NVESTTFCFAAIGRAGGHYVSLNP 264 (371)
T ss_dssp SHHHHHHHHHHSCTTCEEEEESSC
T ss_pred chHHHHHHHHHhhcCCCEEEEEec
Confidence 866555555555 46777776653
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=86.46 E-value=0.63 Score=46.44 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=27.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~ 73 (376)
.++|.|.||||++|++|++.|.++. + ..++.++.
T Consensus 73 ~~~VLVTGatG~IG~~l~~~Ll~~~-~~g~~V~~l~ 107 (478)
T 4dqv_A 73 LRTVLLTGATGFLGRYLVLELLRRL-DVDGRLICLV 107 (478)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHS-CTTCEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhcC-CCCCEEEEEE
Confidence 5899999999999999999888751 2 35777665
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=86.43 E-value=2.8 Score=37.62 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=25.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.+++.|.|++|.+|+.+.+.|.+++ .+++.+
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~ 34 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAG---ANIVLN 34 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTT---CEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 3689999999999999999999863 355544
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=86.33 E-value=2.3 Score=41.00 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=55.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC---------------CCCCceeee--------cCcceEEe---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVE--- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~---------------~~~g~~~~~--------~~~~~~v~--- 92 (376)
..||.|+|+ |-+|.+++..|... ..-++..+-.. +..|+.-.. ....+.+.
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 194 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATS--GIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA 194 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHH--TCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhC--CCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence 479999999 88999999999876 33455544321 111221110 01122222
Q ss_pred -ecCcc----CCCCCcEEEEcCCCch-hhhhHH-HHHhCCCeEEEcC
Q 017153 93 -ELTED----SFDGVDIALFSAGGSI-SKKFGP-IAVEKGSIVVDNS 132 (376)
Q Consensus 93 -~~~~~----~~~~~DvVf~a~~~~~-s~~~~~-~~~~~G~~VIDlS 132 (376)
.++.+ .+.++|+|+.|++... ++.+.. ...+.|+.+|+.+
T Consensus 195 ~~i~~~~~~~~~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~ 241 (353)
T 3h5n_A 195 LNINDYTDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQPYINAG 241 (353)
T ss_dssp CCCCSGGGGGGSCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCchhhhhHhccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEE
Confidence 12211 2678999999998877 665554 4467899998754
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.29 E-value=0.83 Score=43.84 Aligned_cols=91 Identities=11% Similarity=0.076 Sum_probs=52.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-C----ccCC--CCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-T----EDSF--DGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~----~~~~--~~~DvVf~a~~~ 111 (376)
..+|.|+||+|-+|...++++... ...++.++.+....-+.....+.+..+... + ...+ .++|+||+|++.
T Consensus 172 g~~VlV~Ga~G~vG~~a~qlak~~--~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~ 249 (363)
T 4dvj_A 172 APAILIVGGAGGVGSIAVQIARQR--TDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHT 249 (363)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCc
Confidence 368999999999999998877642 245666655421100001111112222110 1 0011 379999999997
Q ss_pred chhhhhHHHHHhCCCeEEEc
Q 017153 112 SISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDl 131 (376)
....+.+-+++..|.++|..
T Consensus 250 ~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 250 DKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHHHHHHHHHSCTTCEEEEC
T ss_pred hhhHHHHHHHhcCCCEEEEE
Confidence 65545555566677777766
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=1.8 Score=40.65 Aligned_cols=124 Identities=22% Similarity=0.194 Sum_probs=56.0
Q ss_pred cccccccccccccccCCCCCCCceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC---------
Q 017153 5 SSHQTQTHFISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK--------- 75 (376)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~--------- 75 (376)
|||.. .|.-|.||-..--.-|-+-.+.--..-+..||.|+|+ |-+|.+++..|...+ .-++..+-.+
T Consensus 3 ~~~~~-~~~~~~~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGa-GGlGs~va~~La~aG--VG~i~lvD~D~Ve~sNL~R 78 (292)
T 3h8v_A 3 SSHHH-HHHSSGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGV-GGVGSVTAEMLTRCG--IGKLLLFDYDKVELANMNR 78 (292)
T ss_dssp ------------------------------CGGGGCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBC-------
T ss_pred ccccc-ccccCCCCchHhhcccccChHHHHHHHhCCeEEEECc-CHHHHHHHHHHHHcC--CCEEEEECCCccChhhccc
Confidence 45543 3556778766544434333211000012479999999 999999999998763 3344443211
Q ss_pred -----CCCCceeee--------cCcceEEee----cCc-c---CC------------CCCcEEEEcCCCchhhhhHHHH-
Q 017153 76 -----RSAGKQLSF--------QDKAYTVEE----LTE-D---SF------------DGVDIALFSAGGSISKKFGPIA- 121 (376)
Q Consensus 76 -----~~~g~~~~~--------~~~~~~v~~----~~~-~---~~------------~~~DvVf~a~~~~~s~~~~~~~- 121 (376)
+..|+.-.. ...++.+.. ++. + .+ .++|+|++|++...++.+..++
T Consensus 79 q~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c 158 (292)
T 3h8v_A 79 LFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTAC 158 (292)
T ss_dssp -----CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHH
T ss_pred ccCChhhcCchHHHHHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHH
Confidence 122321111 012233332 111 1 11 4799999999999887776654
Q ss_pred HhCCCeEEEcC
Q 017153 122 VEKGSIVVDNS 132 (376)
Q Consensus 122 ~~~G~~VIDlS 132 (376)
.+.|..+|+..
T Consensus 159 ~~~~~Pli~~g 169 (292)
T 3h8v_A 159 NELGQTWMESG 169 (292)
T ss_dssp HHHTCCEEEEE
T ss_pred HHhCCCEEEee
Confidence 46788888754
|
| >3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A* | Back alignment and structure |
|---|
Probab=86.19 E-value=0.61 Score=46.48 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=31.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC-CCC-eEEEEEecCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPY-RSIKMLASKRS 77 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~-~p~-~~l~~v~s~~~ 77 (376)
+.||+|+|+||-+|.+-++.+.++. ||+ +++++++..+.
T Consensus 77 mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~N 117 (488)
T 3au8_A 77 PINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKS 117 (488)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSC
T ss_pred ceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCC
Confidence 4689999999999999999998841 255 99998875433
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=86.16 E-value=0.91 Score=40.26 Aligned_cols=31 Identities=13% Similarity=0.355 Sum_probs=25.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|.|.||||++|+.+++.|.+++ .+++++.
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g---~~V~~~~ 32 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAG---HTVIGID 32 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCC---CEEEEEe
Confidence 479999999999999999998863 3665554
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.84 E-value=1.6 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..++-|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G---~~V~~~~ 42 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQG---ADLVLAA 42 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTT---CEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCc---CEEEEEe
Confidence 4689999999999999999999863 4665443
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=85.80 E-value=0.75 Score=42.23 Aligned_cols=32 Identities=3% Similarity=0.171 Sum_probs=25.6
Q ss_pred CCEEEEECcccH--HHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGA--VGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~--vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.||+|. +|+++.+.|++++ .+++.+.
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G---~~V~~~~ 59 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREG---AELAFTY 59 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcC---CEEEEee
Confidence 478999999988 9999999999863 4665443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=85.62 E-value=0.26 Score=46.24 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=41.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeee--c--CcceEEeecCccC----CCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--Q--DKAYTVEELTEDS----FDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~--~--~~~~~v~~~~~~~----~~~~DvVf~a~ 109 (376)
..++.|+|+ |-+|+.++..|... ..-++. +.+++. ..+.+.. . .....+...+.++ +.++|+|+.|+
T Consensus 127 ~k~vlVlGa-GG~g~aia~~L~~~--G~~~v~-i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 127 LDSVVQVGA-GGVGNAVAYALVTH--GVQKLQ-VADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHT--TCSEEE-EECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred CCEEEEECC-cHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence 478999998 89999999999886 322454 344432 1111111 0 0011222212112 35789999999
Q ss_pred CCchh
Q 017153 110 GGSIS 114 (376)
Q Consensus 110 ~~~~s 114 (376)
|.+..
T Consensus 203 p~Gm~ 207 (283)
T 3jyo_A 203 PMGMP 207 (283)
T ss_dssp STTST
T ss_pred CCCCC
Confidence 87654
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=85.51 E-value=0.45 Score=45.36 Aligned_cols=72 Identities=8% Similarity=0.146 Sum_probs=41.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCc--eeee-----cCcceEEeecCc-c----CCCCCcE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGK--QLSF-----QDKAYTVEELTE-D----SFDGVDI 104 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~--~~~~-----~~~~~~v~~~~~-~----~~~~~Dv 104 (376)
..++.|+|+ |-+|+.++..|... ..-++..+ +|+. ..+ .+.. .+..+.+..++. + .+.++|+
T Consensus 154 gk~~lVlGa-GG~g~aia~~L~~~--Ga~~V~i~-nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi 229 (315)
T 3tnl_A 154 GKKMTICGA-GGAATAICIQAALD--GVKEISIF-NRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI 229 (315)
T ss_dssp TSEEEEECC-SHHHHHHHHHHHHT--TCSEEEEE-ECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred CCEEEEECC-ChHHHHHHHHHHHC--CCCEEEEE-ECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence 478999998 89999999999886 22255443 4431 111 1110 011123333321 1 1347899
Q ss_pred EEEcCCCchh
Q 017153 105 ALFSAGGSIS 114 (376)
Q Consensus 105 Vf~a~~~~~s 114 (376)
||.|+|.+..
T Consensus 230 IINaTp~Gm~ 239 (315)
T 3tnl_A 230 FTNATGVGMK 239 (315)
T ss_dssp EEECSSTTST
T ss_pred EEECccCCCC
Confidence 9999997754
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.40 E-value=1.2 Score=39.95 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=27.0
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++..+|.|.||+|.+|+.+++.|.+++ .+++++.
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~ 38 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEG---ATVAACD 38 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEe
Confidence 345789999999999999999998863 4665543
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=85.37 E-value=0.79 Score=46.41 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=51.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCc--hhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS--ISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~--~s~~ 116 (376)
..+|+|+|. |.+|+.+.+.|... ..++.+. +++.. +..........+..+ .+.+..+|+|+.|++.. ...+
T Consensus 277 GktVgIIG~-G~IG~~vA~~l~~~---G~~V~v~-d~~~~-~~~~a~~~G~~~~~l-~ell~~aDiVi~~~~t~~lI~~~ 349 (494)
T 3d64_A 277 GKIAVVAGY-GDVGKGCAQSLRGL---GATVWVT-EIDPI-CALQAAMEGYRVVTM-EYAADKADIFVTATGNYHVINHD 349 (494)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEE-CSCHH-HHHHHHTTTCEECCH-HHHTTTCSEEEECSSSSCSBCHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHC---CCEEEEE-eCChH-hHHHHHHcCCEeCCH-HHHHhcCCEEEECCCcccccCHH
Confidence 479999998 99999999999865 3566544 33211 100000011222221 23357899999998432 2233
Q ss_pred hHHHHHhCCCeEEEcCC
Q 017153 117 FGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~ 133 (376)
... ..+.|+.+||.+.
T Consensus 350 ~l~-~MK~gAilINvgr 365 (494)
T 3d64_A 350 HMK-AMRHNAIVCNIGH 365 (494)
T ss_dssp HHH-HCCTTEEEEECSS
T ss_pred HHh-hCCCCcEEEEcCC
Confidence 322 2357899998775
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=85.37 E-value=1.2 Score=39.65 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=26.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+..+|.|.|+||.+|+.+++.|.+++ .+++++.
T Consensus 10 ~~k~vlITGasggiG~~la~~l~~~G---~~V~~~~ 42 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGLEICRAFAASG---ARLILID 42 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 34789999999999999999999863 4665554
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=85.35 E-value=1.3 Score=42.17 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=51.4
Q ss_pred CEEEEECcccHHHHHH-HHHH-hcCCCCCeE-EEEEecCCC---CCceeeecCcceEEeecCccCC-------CCCcEEE
Q 017153 40 PSVAVVGVTGAVGQEF-LSVL-SDRDFPYRS-IKMLASKRS---AGKQLSFQDKAYTVEELTEDSF-------DGVDIAL 106 (376)
Q Consensus 40 irVaIvGaTG~vG~eL-lr~L-~~~~~p~~~-l~~v~s~~~---~g~~~~~~~~~~~v~~~~~~~~-------~~~DvVf 106 (376)
.+|.|+|+ |-+|... ++++ ... ..+ +.++.+... .-+.....+.+ .+ ....+++ .++|+||
T Consensus 174 ~~VlV~Ga-G~vG~~a~iqla~k~~---Ga~~Vi~~~~~~~~~~~~~~~~~lGa~-~v-~~~~~~~~~i~~~~gg~Dvvi 247 (357)
T 2b5w_A 174 SSAFVLGN-GSLGLLTLAMLKVDDK---GYENLYCLGRRDRPDPTIDIIEELDAT-YV-DSRQTPVEDVPDVYEQMDFIY 247 (357)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHCTT---CCCEEEEEECCCSSCHHHHHHHHTTCE-EE-ETTTSCGGGHHHHSCCEEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHc---CCcEEEEEeCCcccHHHHHHHHHcCCc-cc-CCCccCHHHHHHhCCCCCEEE
Confidence 68999999 9999999 8877 554 334 666654332 11111111112 12 2221121 2689999
Q ss_pred EcCCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 107 FSAGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 107 ~a~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
+|++...+.+.+-+++..|.+++.++.
T Consensus 248 d~~g~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 248 EATGFPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp ECSCCHHHHHHHHHHEEEEEEEEECCC
T ss_pred ECCCChHHHHHHHHHHhcCCEEEEEeC
Confidence 999986444444455566677776654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.30 E-value=1 Score=40.62 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.++|.|.|++|.+|+.+.+.|.+++ .+++.+
T Consensus 6 ~k~vlVTGas~giG~~ia~~l~~~G---~~V~~~ 36 (253)
T 1hxh_A 6 GKVALVTGGASGVGLEVVKLLLGEG---AKVAFS 36 (253)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT---CEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 3689999999999999999999863 355544
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.28 E-value=1.5 Score=39.14 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+++.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~ 37 (246)
T 2ag5_A 6 GKVIILTAAAQGIGQAAALAFAREG---AKVIATD 37 (246)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC---CEEEEEE
Confidence 4689999999999999999999873 4665443
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=85.11 E-value=0.79 Score=39.33 Aligned_cols=36 Identities=17% Similarity=0.422 Sum_probs=27.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA 78 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~ 78 (376)
+..|+|||| |-+|..+...|.+++ +++.++-..+..
T Consensus 2 t~dV~IIGa-GpaGL~aA~~La~~G---~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 2 TVPIAIIGT-GIAGLSAAQALTAAG---HQVHLFDKSRGS 37 (336)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTT---CCEEEECSSSSS
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCC---CCEEEEECCCCC
Confidence 477999999 999999999999874 466666433333
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=85.06 E-value=0.38 Score=45.68 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=52.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc---C---C---CCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED---S---F---DGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~---~---~---~~~DvVf~a~ 109 (376)
..+|.|+|++|-+|..+++++... ..++.++......-+.....+.+..+...+.+ . + .++|+||.|+
T Consensus 145 g~~VlV~Ga~g~iG~~~~~~a~~~---Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 221 (340)
T 3gms_A 145 NDVLLVNACGSAIGHLFAQLSQIL---NFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSI 221 (340)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHH---TCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESS
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECC
Confidence 469999999889999999888765 34666555322211111111122222211111 0 1 3789999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
+.....+.+ .++..|.++|..+.
T Consensus 222 g~~~~~~~~-~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 222 GGPDGNELA-FSLRPNGHFLTIGL 244 (340)
T ss_dssp CHHHHHHHH-HTEEEEEEEEECCC
T ss_pred CChhHHHHH-HHhcCCCEEEEEee
Confidence 987665544 34455666665543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.98 E-value=0.53 Score=44.78 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=49.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-ccCC---------CCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSF---------DGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~~~---------~~~DvVf~a 108 (376)
..+|.|.|++|-+|..+++++... ..++.++......-+.....+.+..+ +.. .+++ .++|+||.+
T Consensus 170 g~~vlV~Ga~ggiG~~~~~~a~~~---Ga~V~~~~~~~~~~~~~~~~g~~~~~-d~~~~~~~~~~~~~~~~~~~D~vi~~ 245 (347)
T 2hcy_A 170 GHWVAISGAAGGLGSLAVQYAKAM---GYRVLGIDGGEGKEELFRSIGGEVFI-DFTKEKDIVGAVLKATDGGAHGVINV 245 (347)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEECSTTHHHHHHHTTCCEEE-ETTTCSCHHHHHHHHHTSCEEEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCcEEEEcCCHHHHHHHHHcCCceEE-ecCccHhHHHHHHHHhCCCCCEEEEC
Confidence 468999999999999999988875 24666554221111111111112222 211 1111 168999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
++.....+.+-.++..|.++|..+.
T Consensus 246 ~g~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 246 SVSEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp SSCHHHHHHHTTSEEEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHhcCCEEEEEeC
Confidence 8864332222222344556666554
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=84.85 E-value=1.4 Score=44.31 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=53.5
Q ss_pred CCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEe-ecCccCCCCCcEEEEcCCCchh
Q 017153 38 SAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVE-ELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~-~~~~~~~~~~DvVf~a~~~~~s 114 (376)
+..||.|+|. |-+|.. +.++|.+++ .++... +.+ ....... ....+.+. ..+++.+.++|+|+...+-...
T Consensus 21 ~~~~v~viGi-G~sG~s~~A~~l~~~G---~~V~~~-D~~-~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~ 94 (494)
T 4hv4_A 21 RVRHIHFVGI-GGAGMGGIAEVLANEG---YQISGS-DLA-PNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISAD 94 (494)
T ss_dssp -CCEEEEETT-TSTTHHHHHHHHHHTT---CEEEEE-CSS-CCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTT
T ss_pred cCCEEEEEEE-cHhhHHHHHHHHHhCC---CeEEEE-ECC-CCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCC
Confidence 3579999999 888986 899998874 355432 222 1111100 11124443 3445567789999887655444
Q ss_pred hhhHHHHHhCCCeEEE
Q 017153 115 KKFGPIAVEKGSIVVD 130 (376)
Q Consensus 115 ~~~~~~~~~~G~~VID 130 (376)
.....++.++|+.|+.
T Consensus 95 ~p~~~~a~~~gi~v~~ 110 (494)
T 4hv4_A 95 NPEIVAAREARIPVIR 110 (494)
T ss_dssp CHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHCCCCEEc
Confidence 4556667789999984
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=84.80 E-value=0.99 Score=41.34 Aligned_cols=54 Identities=17% Similarity=0.059 Sum_probs=26.7
Q ss_pred cccCCCCCCCceeeeccCC--CCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 17 LPANKPRTKPMFTRVRMSY--QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~--~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+|..|-++.++++.-+++| ..+...+.|.|++|.+|+.+.+.|.+++ .+++.+.
T Consensus 4 ~~~~~~~~~~~~~~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G---~~V~~~~ 59 (270)
T 3ftp_A 4 HHHHHMGTLEAQTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRG---AMVIGTA 59 (270)
T ss_dssp -------------------CCTTTTCEEEETTCSSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCccccccccCCCCCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 3455666677777765443 3345678889999999999999999863 3665443
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.75 E-value=1.6 Score=39.63 Aligned_cols=32 Identities=6% Similarity=0.263 Sum_probs=25.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.++|.|.|++|.+|+.+.+.|.+++ .+++++.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G---~~V~~~~ 37 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREG---AKVTITG 37 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 4679999999999999999999863 4665543
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=3 Score=36.74 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=50.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc--cCC--CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE--DSF--DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~--~~~--~~~DvVf~a~~~~~s 114 (376)
+.|+.|+|| |--|+++++.|.+. .++++.+.+++...+. . ..+++...+. ..+ ...|.+|.|.|....
T Consensus 12 ~k~v~IiGA-Gg~g~~v~~~l~~~---~~~~vgfiDd~~~~~~--~--~g~~Vlg~~~~~~~~~~~~~~~v~iAIg~~~~ 83 (220)
T 4ea9_A 12 IGGVVIIGG-GGHAKVVIESLRAC---GETVAAIVDADPTRRA--V--LGVPVVGDDLALPMLREQGLSRLFVAIGDNRL 83 (220)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHT---TCCEEEEECSCC---C--B--TTBCEEESGGGHHHHHHTTCCEEEECCCCHHH
T ss_pred CCCEEEEcC-CHHHHHHHHHHHhC---CCEEEEEEeCCcccCc--C--CCeeEECCHHHHHHhhcccccEEEEecCCHHH
Confidence 468999999 77799999999874 4677777765432221 1 2344443221 112 246778999987433
Q ss_pred -hhhHHHHHhCCCeE
Q 017153 115 -KKFGPIAVEKGSIV 128 (376)
Q Consensus 115 -~~~~~~~~~~G~~V 128 (376)
+++..++.+.|+.+
T Consensus 84 R~~i~~~l~~~g~~~ 98 (220)
T 4ea9_A 84 RQKLGRKARDHGFSL 98 (220)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhcCCCc
Confidence 44455666777654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=84.74 E-value=2.2 Score=42.23 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=53.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-cCcceEEe-ecCccC-CCC-CcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QDKAYTVE-ELTEDS-FDG-VDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-~~~~~~v~-~~~~~~-~~~-~DvVf~a~~~~~ 113 (376)
..||.|+|. |-+|..+++.|.+++ .++...-.+... ...... ....+.+. ..+++. +.+ +|+|+.+.+-..
T Consensus 9 ~k~v~viG~-G~sG~s~A~~l~~~G---~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~ 84 (451)
T 3lk7_A 9 NKKVLVLGL-ARSGEAAARLLAKLG---AIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPY 84 (451)
T ss_dssp TCEEEEECC-TTTHHHHHHHHHHTT---CEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCT
T ss_pred CCEEEEEee-CHHHHHHHHHHHhCC---CEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCC
Confidence 479999999 999999999999874 455543221111 110000 00123333 223333 355 899998876655
Q ss_pred hhhhHHHHHhCCCeEE
Q 017153 114 SKKFGPIAVEKGSIVV 129 (376)
Q Consensus 114 s~~~~~~~~~~G~~VI 129 (376)
......++.+.|+.|+
T Consensus 85 ~~p~~~~a~~~gi~v~ 100 (451)
T 3lk7_A 85 NNPMVKKALEKQIPVL 100 (451)
T ss_dssp TSHHHHHHHHTTCCEE
T ss_pred CChhHHHHHHCCCcEE
Confidence 5556677788999998
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=0.57 Score=46.38 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=32.0
Q ss_pred eccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC
Q 017153 31 VRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG 79 (376)
Q Consensus 31 ~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g 79 (376)
++|+.+.+...|.|||| |..|......|.++ ...++.++-.+...|
T Consensus 2 ~~Ms~p~~~~DVvIIGa-GisGLsaA~~L~k~--~G~~V~VlE~~~~~G 47 (513)
T 4gde_A 2 IAMTHPDISVDVLVIGA-GPTGLGAAKRLNQI--DGPSWMIVDSNETPG 47 (513)
T ss_dssp ----CCSEEEEEEEECC-SHHHHHHHHHHHHH--CCSCEEEEESSSSCC
T ss_pred CCCCCCCCCCCEEEECC-cHHHHHHHHHHHhh--CCCCEEEEECCCCCc
Confidence 35777766789999999 99999999988764 345677776555444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 376 | ||||
| d1t4ba2 | 221 | d.81.1.1 (A:134-354) Aspartate beta-semialdehyde d | 4e-64 | |
| d1mb4a2 | 222 | d.81.1.1 (A:133-354) Aspartate beta-semialdehyde d | 3e-62 | |
| d2gz1a2 | 202 | d.81.1.1 (A:128-329) Aspartate beta-semialdehyde d | 8e-60 | |
| d2hjsa2 | 190 | d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 | 2e-57 | |
| d2gz1a1 | 154 | c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semiald | 1e-34 | |
| d1mb4a1 | 147 | c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semiald | 2e-33 | |
| d2czca1 | 162 | d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate de | 1e-31 | |
| d2hjsa1 | 144 | c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog | 4e-31 | |
| d1cf2o2 | 165 | d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate de | 1e-29 | |
| d1b7go2 | 162 | d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate de | 1e-28 | |
| d1t4ba1 | 146 | c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semiald | 4e-28 | |
| d2cvoa1 | 183 | c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde | 2e-18 | |
| d1nvmb1 | 157 | c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge | 2e-17 | |
| d1vkna1 | 176 | c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamy | 3e-17 | |
| d2g17a1 | 179 | c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamy | 3e-13 |
| >d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 201 bits (513), Expect = 4e-64
Identities = 58/223 (26%), Positives = 84/223 (37%), Gaps = 31/223 (13%)
Query: 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVL---------- 219
NC+ + LM+ L V + V+TYQAASG GA M EL Q +
Sbjct: 1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATP 60
Query: 220 ---------------EGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
F A +L L+NG + EE K ET KI
Sbjct: 61 SSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKIL 120
Query: 265 -NDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA---PGVVVIDDRASN 320
+ V C+RV +R H+++ ++ +K + T ++L VV D +
Sbjct: 121 NTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITM 180
Query: 321 HFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKG 363
TP V+ VGR+R+ L F GDQ+ G
Sbjct: 181 RELTPAAVTGTLTTPVGRLRKLNMGP--EFLSAFTVGDQLLWG 221
|
| >d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Score = 196 bits (500), Expect = 3e-62
Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 32/224 (14%)
Query: 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTR------------- 216
NC+ + LMA L+ R V M TYQAASGAGA M EL Q
Sbjct: 1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANP 60
Query: 217 ------------EVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
E + F A +L +NG ++EE K E KI
Sbjct: 61 ASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKIL 120
Query: 265 --NDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDD---RAS 319
D V + TC+R+ MR H++++ ++ ++ + D +++ V + +
Sbjct: 121 GLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIEEMIATHNDWVKVIPNERDIT 180
Query: 320 NHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKG 363
TP +V+ V VGR+R+ D L+ F GDQ+ G
Sbjct: 181 ARELTPAKVTGTLSVPVGRLRKMAMGD--DFLNAFTVGDQLLWG 222
|
| >d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 190 bits (483), Expect = 8e-60
Identities = 71/204 (34%), Positives = 107/204 (52%), Gaps = 13/204 (6%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGK-------- 222
CSTI ++A P+ ++ + R++VSTYQA SGAG A+ E + + REVL
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHA 60
Query: 223 ---PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVP 279
P AFN +N Y EEMKM KET+KI D + V+ATC+R+P
Sbjct: 61 EILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIP 120
Query: 280 VMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRI 339
V+ AH+ESV ++ ++ + + + PG V+ DD A +P + D VGRI
Sbjct: 121 VLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAHQIYPQAINAVGSRDTFVGRI 180
Query: 340 RRDVSQDGNHGLDIFVCGDQVRKG 363
R+D+ + G+ ++V D + KG
Sbjct: 181 RKDLDAE--KGIHMWVVSDNLLKG 202
|
| >d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 183 bits (465), Expect = 2e-57
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 5/194 (2%)
Query: 171 CSTIICL-MAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF 229
C+ L PL ++ ++ + S G ++EL QT E+L +P ++F
Sbjct: 1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLF 60
Query: 230 SQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVN 289
+Q AFNL + V G++ E ++ E + + ++ + TCI+ PV + SV
Sbjct: 61 DRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVT 120
Query: 290 LQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNH 349
LQ +P+D +L G+ + + ++ + +D+ VGR+R +
Sbjct: 121 LQCAEPVDLAAVTRVLDATKGIEWVGEG--DYPTVVGDALGQDETYVGRVRAGQADP--C 176
Query: 350 GLDIFVCGDQVRKG 363
+++++ D VRKG
Sbjct: 177 QVNLWIVSDNVRKG 190
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Score = 123 bits (308), Expect = 1e-34
Identities = 72/157 (45%), Positives = 94/157 (59%), Gaps = 7/157 (4%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG + + +L + P I+ LAS RSAGK L F+D+ T+EE TE +F+G
Sbjct: 4 VAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEG 63
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VDIALFSAG S S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A+
Sbjct: 64 VDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHAL------DA 117
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198
+IA PN + +A LH R V ++
Sbjct: 118 HNGIIACPNAAWNSVQIAE-TLHERGLVRPTAELKFE 153
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Score = 119 bits (300), Expect = 2e-33
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSF 99
V +VG G VG + + + RDF ++ + +F A + + +S
Sbjct: 3 VGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+D + GGS ++K P + G +D +S RM + + + VN + I
Sbjct: 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQ---IL 119
Query: 158 VGMGKG-----ALIANPNCSTIICLMA 179
G+ G A P T+ ++A
Sbjct: 120 HGIHHGTKTFVGGAAEPLRRTLRIILA 146
|
| >d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 115 bits (289), Expect = 1e-31
Identities = 22/190 (11%), Positives = 54/190 (28%), Gaps = 40/190 (21%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T + + + A V+ A
Sbjct: 2 CNTTGLVRTLSAIREYADYVYAVMIRRAADPN-------------------------DTK 36
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNL 290
+ + ++ +++ + + VP H SV +
Sbjct: 37 RGPINAIKPTVE---VPSHHGPDVQT---------VIPINIETMAFVVPTTLMHVHSVMV 84
Query: 291 QFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHG 350
+ +KPL +D DI +N V++ + + +D + R ++ +
Sbjct: 85 ELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARD---LHREWNNLYEIAVWK 141
Query: 351 LDIFVCGDQV 360
I + G+++
Sbjct: 142 ESINIKGNRL 151
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 113 bits (283), Expect = 4e-31
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TG+VG+ + +L +RDFP + +LAS SAG+++ F + + V ++ F
Sbjct: 5 VAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSS 64
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V +A F+A +S+ A G V+D S A P V+ VN E ++
Sbjct: 65 VGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP-SVAPPVMVSVNAERLASQA---- 119
Query: 162 KGALIANPNCSTIICLMAATPLH 184
L+++P + L H
Sbjct: 120 APFLLSSPAALNAVLLGELLIKH 142
|
| >d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Score = 109 bits (275), Expect = 1e-29
Identities = 22/190 (11%), Positives = 55/190 (28%), Gaps = 37/190 (19%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T PLH + ++ + + +
Sbjct: 2 CNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPAQVSK---------------------- 39
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNL 290
+ + + + + + + + + VP H +V +
Sbjct: 40 -GPINAIIPN--------PPKLPSHHGPDVKTVLDIN---IDTMAVIVPTTLMHQHNVMV 87
Query: 291 QFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHG 350
+ E+ D D+ ++ P V++I + K+ +GR R D+ +
Sbjct: 88 EVEETPTVDDIIDVFEDTPRVILISAEDGLTSTAEIMEYAKE---LGRSRNDLFEIPVWR 144
Query: 351 LDIFVCGDQV 360
I V +++
Sbjct: 145 ESITVVDNEI 154
|
| >d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 107 bits (268), Expect = 1e-28
Identities = 23/190 (12%), Positives = 57/190 (30%), Gaps = 36/190 (18%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T L +++ +KV ++ + + A+ + +
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKKGPI--------------NSLVP 46
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNL 290
+++ + + P H +N+
Sbjct: 47 DPATVPSHHAKDVNSV-------------------IRNLDIATMAVIAPTTLMHMHFINI 87
Query: 291 QFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHG 350
+ +++ +L+N P +V+I + L +D + R R D+ +
Sbjct: 88 TLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARD---LKRDRNDIPEVMIFS 144
Query: 351 LDIFVCGDQV 360
I+V D+V
Sbjct: 145 DSIYVKDDEV 154
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} Length = 146 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 4e-28
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSF 99
V +G G VG + ++ +RDF ++ + SF T+++ + ++
Sbjct: 4 VGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL 63
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAM---- 153
+DI + GG + + P E G +D +S+ RM ++ +++ VN + +
Sbjct: 64 KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGL 123
Query: 154 -SGIKVGMGKGALIANPNCSTI 174
+GI+ +G A P +
Sbjct: 124 NNGIRTFVGG---AAEPLRRML 142
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Score = 80.0 bits (196), Expect = 2e-18
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 19/175 (10%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT------ 95
+AV+G +G G E + +L++ P IK++ + R AG+Q ++L
Sbjct: 8 IAVLGASGYTGAEIVRLLANH--PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVK 65
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ F VD +++ ++ IV ++ N + A
Sbjct: 66 DADFSNVDAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSHRAPEL 125
Query: 156 IKVGMG-----------KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQA 199
+ + L+ANP A L+ + YQ
Sbjct: 126 QQEAVYGLTEVLRNEIRNARLVANPGLVKGASGQAVQNLNLMMGLPENTGLQYQP 180
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Score = 76.7 bits (188), Expect = 2e-17
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA-------YTVEEL 94
VA++G +G +G + + + R+ Y + + +A L+ + +
Sbjct: 7 VAIIG-SGNIGTDLMIKV-LRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLI 64
Query: 95 TEDSFDGVDIALF--SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
F +D SA + + + G ++D + A P +P VN E
Sbjct: 65 KLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPA----AIGPYCVPVVNLEE 120
Query: 153 MSGIK-VGMGKGALIANPNCSTIICLMAATPLHRRAK 188
G V M + I+ A R A+
Sbjct: 121 HLGKLNVNM-----VTYAGNLDIMTSAALATAERMAQ 152
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Score = 76.4 bits (187), Expect = 3e-17
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 42/190 (22%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK-----AYTVEELTE 96
++G TG G E + +L + P I L+S+ AGK+L + E E
Sbjct: 4 AGIIGATGYTGLELVRLLKN--HPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 61
Query: 97 DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE----------------- 139
D+ + S + KG ++D + FR +
Sbjct: 62 KVSKNCDVLFTALPAGASYDL--VRELKGVKIIDLGADFRFDDPGVYREWYGKELSGYEN 119
Query: 140 -NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198
+PE++ E + + ++ NP A ++ +
Sbjct: 120 IKRVYGLPELHREEIKNAQ-------VVGNPGLVKGASGQAVQNMNIMFGL--------D 164
Query: 199 AASGAGAAAM 208
G +
Sbjct: 165 ETKGLEFTPI 174
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Score = 65.5 bits (158), Expect = 3e-13
Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 21/169 (12%)
Query: 42 VAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGK--------QLSFQDKAYTVE 92
+VG +G G E +S ++ ++ + A AGK D
Sbjct: 4 TLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM 63
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
D VD+ + +S P ++ G +V D S AFR+ +
Sbjct: 64 SDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQ 123
Query: 153 MSGIKVGMGKGA------------LIANPNCSTIICLMAATPLHRRAKV 189
+ G LIA P A + R
Sbjct: 124 YPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGF 172
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 376 | |||
| d2hjsa2 | 190 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 100.0 | |
| d1t4ba2 | 221 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 100.0 | |
| d1mb4a2 | 222 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 100.0 | |
| d2gz1a2 | 202 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 100.0 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 100.0 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 100.0 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 100.0 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 100.0 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 99.98 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 99.97 | |
| d2cvoa2 | 165 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 99.97 | |
| d1vkna2 | 163 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 99.96 | |
| d2g17a2 | 155 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 99.96 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 99.94 | |
| d1cf2o2 | 165 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.88 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 99.86 | |
| d1b7go2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.79 | |
| d2czca1 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.75 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.74 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.73 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.71 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.69 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.68 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.67 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.67 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.67 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.66 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.64 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.6 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.59 | |
| d1u8fo2 | 164 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.59 | |
| d2g82a2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.57 | |
| d1k3ta2 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.57 | |
| d1obfo2 | 162 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.57 | |
| d1rm4a2 | 163 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.57 | |
| d3cmco2 | 163 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.54 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 99.46 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.76 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 98.49 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.12 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 98.03 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.98 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.97 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.96 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.91 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.86 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.8 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.8 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.72 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 97.64 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.64 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.59 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.55 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 97.52 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 97.41 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.41 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.17 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.14 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.04 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 97.01 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 96.97 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.95 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.95 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.9 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 96.85 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.8 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.68 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.67 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.66 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 96.65 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.65 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 96.58 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.49 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.48 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.46 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 96.46 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.45 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 96.36 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 96.32 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.3 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 96.29 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.17 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.11 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.1 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.08 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.07 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.83 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.76 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.63 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.61 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.61 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 95.54 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.53 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 95.51 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 95.42 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.34 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.21 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 95.17 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 95.07 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.96 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 94.92 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 94.88 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 94.71 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.63 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 94.58 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 94.58 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.48 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.32 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.22 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 94.13 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.95 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.85 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 93.62 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 93.53 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.52 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 93.44 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.27 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.12 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.08 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 93.03 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 93.01 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 92.9 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 92.87 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.71 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 92.68 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 92.56 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 92.51 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 92.5 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 92.42 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 92.42 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.39 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 92.37 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 92.24 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 91.99 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 91.65 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 91.41 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.27 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.07 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 90.88 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 90.71 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 90.64 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.42 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.39 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 90.35 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 89.98 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 89.92 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 89.65 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 89.43 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.3 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 89.23 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 89.23 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 89.22 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 88.95 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 88.93 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 88.92 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.9 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.68 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 88.59 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.47 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 88.43 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 88.25 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 88.25 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.24 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.0 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 87.82 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 87.71 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 87.64 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 87.63 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.49 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.28 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 86.97 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 86.63 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 86.61 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.22 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.12 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 86.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 85.82 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 85.76 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 85.51 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 85.24 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 85.22 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 85.2 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 84.99 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 84.79 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 84.72 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 84.63 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 84.28 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 84.02 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 83.81 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 83.81 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 83.81 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 83.51 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 83.51 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 83.5 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 83.48 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 83.13 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 83.05 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 82.87 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 82.77 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 82.64 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 82.53 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 82.43 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 82.4 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 82.04 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 81.75 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.28 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 81.21 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.95 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 80.85 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 80.68 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 80.3 |
| >d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=8.8e-47 Score=337.38 Aligned_cols=188 Identities=25% Similarity=0.457 Sum_probs=178.2
Q ss_pred chHHH-HHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 171 CSTII-CLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 171 C~~ta-~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
|++++ ++++|+||++.++|++++++|||++||+|++++++|++|++.+++|++.++..|+++++||+|||++.+.|+|+
T Consensus 1 Cs~~~qL~~aL~PL~~~~~i~rv~vsTyQavSGaG~~gv~eL~~Qt~~ll~~~~~~~~~fp~~iafNviP~ig~~~~~g~ 80 (190)
T d2hjsa2 1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGH 80 (190)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSC
T ss_pred ChhHHHHHHHHHHHHHhhCceEEEEEEEechhhcCHHHHHHHHHHHHHHhccccccccccchhhcccccccccccccccc
Confidence 88764 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccc-cc
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL-EV 328 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~-~v 328 (376)
++||+|+..|++|||+...+.|+.||+||||++||+.+++++|+++++.++++++|+++|++.++++. .+|+|. ++
T Consensus 81 t~EE~K~~~Et~KIL~~~~l~vs~TcvRVPV~~gHs~sv~ve~~~~i~~~e~~~~l~~~~gv~~~d~~---~~ptp~~~~ 157 (190)
T d2hjsa2 81 SAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKGIEWVGEG---DYPTVVGDA 157 (190)
T ss_dssp BHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHSTTEEECCTT---CCCCCCCCC
T ss_pred chhhhhhhhhhhhhccCccccceeeeEEeehhhcchhheeeeeecCccHHHHHHHHHhCCCCeeeccc---cCCCCcccc
Confidence 99999999999999998888999999999999999999999999999999999999999999998754 478886 78
Q ss_pred cCCCceEEEEEEeccCCCCCCeEEEEEEechHHhh
Q 017153 329 SNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKG 363 (376)
Q Consensus 329 ~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kG 363 (376)
.|++.|+|||+|+|.. .++++++|++.||||||
T Consensus 158 ~g~d~v~VGRiR~d~~--~~~~l~~w~v~DnlrkG 190 (190)
T d2hjsa2 158 LGQDETYVGRVRAGQA--DPCQVNLWIVSDNVRKG 190 (190)
T ss_dssp TTSSCEEEEEEEECSS--CTTEEEEEEEECCCCCC
T ss_pred cCCcCEEEEeeEcCCC--CCCEEEEEEEeCCcccC
Confidence 9999999999999865 34899999999999998
|
| >d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-46 Score=342.74 Aligned_cols=192 Identities=31% Similarity=0.409 Sum_probs=174.2
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhc-------------------------CCCC
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLE-------------------------GKPP 224 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~-------------------------~~~~ 224 (376)
||+++.++++|+||+++|+|++|+|+|||++||||+++++||.+|+..+++ +++.
T Consensus 1 NCst~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~~v~EL~~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (221)
T d1t4ba2 1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGEL 80 (221)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHTCS
T ss_pred CcHHHHHHHHHHHHHHHhCceEEEEEhhhhhhhhcHHHHHHHHHHHHhhhccccccccCchhhccchhhhhhhhcccccC
Confidence 799999999999999999999999999999999999999999999876543 3455
Q ss_pred CcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCC-CcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHH
Q 017153 225 TCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD-VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARD 303 (376)
Q Consensus 225 ~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~-~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~ 303 (376)
+...|+++++||+|||++.+.|+||++||+|++.|++|||+.+. +.|+.||+||||++||+.+++++|+++++.+|+++
T Consensus 81 ~~~~f~~~iAfNvIP~ig~~~e~G~t~EE~K~~~EtrKIL~~~~~i~VsaTcVRVPV~~gHsesv~ve~~~~i~~~ev~~ 160 (221)
T d1t4ba2 81 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEE 160 (221)
T ss_dssp CCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHHHHH
T ss_pred CccccccccccccccCCccccccceechhHHHHHHHHhhhccccccceeeEEeeeehhccchheeeeehhhccchHHHHH
Confidence 67789999999999999999999999999999999999998665 88999999999999999999999999999999999
Q ss_pred HHHh-CCCcEEeeCC--CCCCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhh
Q 017153 304 ILKN-APGVVVIDDR--ASNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKG 363 (376)
Q Consensus 304 ~~~~-~~~v~v~~~~--~~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kG 363 (376)
+|.+ .|++.|+..+ ....||+|.++.|++.|+|||+|+|.. .++.+++|++.||||||
T Consensus 161 ~L~~~~p~~~vv~~d~~~~~~~ptP~~~~G~d~V~VGRIR~D~~--~~~~l~lw~v~DNL~kG 221 (221)
T d1t4ba2 161 LLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRKLNM--GPEFLSAFTVGDQLLWG 221 (221)
T ss_dssp HHHHHCTTCCBCCSCHHHHHHHSSHHHHTTSSCCCEEEEEECTT--CTTEEEEEEEEETTCCC
T ss_pred HHhhccCCceEEecCcccccCCCCCHHHCCCCCeEEecccccCC--CCCEEEEEEEecccccC
Confidence 9976 5788877432 223579999999999999999999875 34899999999999998
|
| >d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=100.00 E-value=4.2e-46 Score=340.55 Aligned_cols=192 Identities=31% Similarity=0.418 Sum_probs=173.8
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhh-------------------------hcCCCC
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV-------------------------LEGKPP 224 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~-------------------------~~~~~~ 224 (376)
||+|++++++|+||++.++|++++|+|||++||||+++++||.+|+..+ +.+++.
T Consensus 1 NCsT~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~gv~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (222)
T d1mb4a2 1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSF 80 (222)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHSTTS
T ss_pred CcHHHHHHHHHHHHHHHhCeeEEEEeehhhhhhhcHHHHHHHHHHHHhhhccchhhhcCcchhhccchhhhhhhcccCCC
Confidence 7999999999999999999999999999999999999999999998633 445566
Q ss_pred CcccccccccccccccCCCCcCCCchHHHHHHHHHHHHHhCCCC--CcEEEEEEEecccceeEeeEEEEeCCCCCHHHHH
Q 017153 225 TCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWNDKD--VRVTATCIRVPVMRAHAESVNLQFEKPLDEDTAR 302 (376)
Q Consensus 225 ~~~~~~~~~a~niiph~~~~~e~g~~~ee~k~~~e~~~il~~~~--~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~ 302 (376)
+...|++++|||+|||++.+.++||++||+|+++|++|||+..+ +.|+.||+||||++||+.+++++|+++++.+|++
T Consensus 81 ~~~~f~~~iAfNviP~i~~~~~~G~t~EE~K~~~EtrKIL~~~d~~i~VsaTCVRVPV~~gHsesV~ve~~~~is~~e~~ 160 (222)
T d1mb4a2 81 PTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIE 160 (222)
T ss_dssp SCTTTSSCCTBSEESCCSCBCSSSCBHHHHHHHHHHHHHHTCTTSCCCEECCCCEESBSSEEEEEEEEEESSCCCHHHHH
T ss_pred ccccccccchhcccccccccccCCcccchHHHHHHHHHHhcCCCcccchhHHHHhhhhhhheeeeEEEEeeecccHHHHH
Confidence 67889999999999999999999999999999999999998544 8999999999999999999999999999999999
Q ss_pred HHHHhC-CCcEEeeCCC--CCCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhh
Q 017153 303 DILKNA-PGVVVIDDRA--SNHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKG 363 (376)
Q Consensus 303 ~~~~~~-~~v~v~~~~~--~~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kG 363 (376)
++|+++ +++++++... ...||+|.++.|++.|+|||+|+|... ++.|.+|++.||||||
T Consensus 161 ~~L~~~~~~v~vi~~~~~~~~~~~tP~~~~g~d~V~VGRiR~d~~~--~~~l~~wvv~DNLrKG 222 (222)
T d1mb4a2 161 EMIATHNDWVKVIPNERDITARELTPAKVTGTLSVPVGRLRKMAMG--DDFLNAFTVGDQLLWG 222 (222)
T ss_dssp HHHHTSCSSEEECCSCHHHHHHHSSHHHHTTSSCEEEEEEEEETTE--EEEEEEEEEEETTTTT
T ss_pred HHHhccccccccccccccccCCCCChHHhcCCcceeeecCEecCCC--CCEEEEEEEecccccC
Confidence 999987 5778875431 245799999999999999999998653 3899999999999998
|
| >d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=3.8e-44 Score=324.37 Aligned_cols=191 Identities=37% Similarity=0.606 Sum_probs=177.5
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCC-----------CCCcccccccccccccc
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGK-----------PPTCKIFSQQYAFNLFS 239 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~-----------~~~~~~~~~~~a~niip 239 (376)
|+|+.++++|+||+++|+|++++|+|||++||||++|+++|++|+..+++++ |.....++.+++||+||
T Consensus 1 Cst~~l~~aL~pL~~~~gi~~v~vsTyQAvSGaG~~gv~eL~~q~~~~l~~~~~~~~~~~~~~p~~~~~~~~~iafN~iP 80 (202)
T d2gz1a2 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALP 80 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBC
T ss_pred CcHHHHHHHHHHHHHhcCceEEEEEehHhHHhhhHHHHHHHHHHHHHHhcccccccccchhcccccccccceehhhhhhh
Confidence 9999999999999999999999999999999999999999999999988743 22345577899999999
Q ss_pred cCCCCcCCCchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCC
Q 017153 240 HNAPVLENGYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRAS 319 (376)
Q Consensus 240 h~~~~~e~g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~ 319 (376)
|++.+.|+|+++||+|+..|.+|+|+...+.|+.||+||||++||+.+++++|+++++.++++++|.++|++.+.++...
T Consensus 81 ~i~~~~~~g~t~EE~k~~~E~~kIl~~~~~~vsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~g~~~~d~~~~ 160 (202)
T d2gz1a2 81 QIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPGAVLEDDVAH 160 (202)
T ss_dssp CCSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHTSTTEEECCBGGG
T ss_pred cccchhcccchhhhhHHhhhhcceecccccCcccceEEEEEeecceEEEEEeeehhccHHHHHHHHhcCCCCceeecccc
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999998876656
Q ss_pred CCCCccccccCCCceEEEEEEeccCCCCCCeEEEEEEechHHhh
Q 017153 320 NHFPTPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQVRKG 363 (376)
Q Consensus 320 ~~~p~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DNL~kG 363 (376)
..+|+|.++.|++.|+|||+|.|.. .+++|++|++.|||+||
T Consensus 161 ~~~p~p~~~~g~~~v~VGRiR~d~~--~~~~l~~w~v~DNlrkG 202 (202)
T d2gz1a2 161 QIYPQAINAVGSRDTFVGRIRKDLD--AEKGIHMWVVSDNLLKG 202 (202)
T ss_dssp TBCCCHHHHTTCSSEEEEEEEECSS--CTTEEEEEEEECTTTTT
T ss_pred CCCCCChhhcCCCCEEEEeeEcCCC--CCCEEEEEEEecccccC
Confidence 6799999999999999999999865 34899999999999998
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=100.00 E-value=8.3e-37 Score=265.31 Aligned_cols=152 Identities=47% Similarity=0.723 Sum_probs=137.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
.||||+|||||+|+||+|+|.+|+||..++..++|+++.|+.+.+...........++++.++|++|+|+|++.+.++++
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~~ 81 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYAP 81 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHHh
Confidence 58999999999999999999999889999999999999999998876666666656667789999999999999999999
Q ss_pred HHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCcEEEEEEEc
Q 017153 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~v~t~~ 198 (376)
++.++|++|||+|+|||+++++||++||+|++.+.. ..++|||||||||++++ |+||+++++|++.+..++|
T Consensus 82 ~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~------~~~iIAnPgC~tt~i~~-l~PL~~~~lik~~~~~~~~ 153 (154)
T d2gz1a1 82 YAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDA------HNGIIACPNAAWNSVQI-AETLHERGLVRPTAELKFE 153 (154)
T ss_dssp HHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGG------CCSEEECCCTHHHHHHH-HHHHHHTTCCSCCSSCCSC
T ss_pred hhccccceehhcChhhhccCCcccccchhhHHHhcC------cCceEECCCCHHHHHHH-HHHHHHhcCCCccceeeec
Confidence 999999999999999999999999999999999874 46799999999998876 7999999999977666654
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.2e-36 Score=261.54 Aligned_cols=142 Identities=30% Similarity=0.482 Sum_probs=129.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
+|||||+|||||+|+||+|+|.+|+||.+++..++|++++|+.+.+...++.+...+.+.+.++|++|+|+|++.+.+++
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~ 81 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHA 81 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhc
Confidence 58999999999999999999988888999999999999999999988777777777777788999999999999999999
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHH
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~ 185 (376)
+++.++|++|||+|++||++++ ++++||+|++.++.++ +.++|||||||||+++++|+|+++
T Consensus 82 ~~~~~~g~~VID~Ss~fR~~~~-~~~vpevn~~~l~~~~----~~~iIANPgC~t~~~ll~L~~~h~ 143 (144)
T d2hjsa1 82 ERARAAGCSVIDLSGALEPSVA-PPVMVSVNAERLASQA----APFLLSSPAALNAVLLGELLIKHY 143 (144)
T ss_dssp HHHHHTTCEEEETTCTTTTTTS-CBCCHHHHGGGGGGSC----SSCEEECCCHHHHHHHHHHHHHHC
T ss_pred cccccCCceEEeechhhccccc-ccccccccHHHHHhcc----CCCEEccCcHHHHHHHHHhhhhcc
Confidence 9999999999999999999765 6789999999997542 578999999999999999999975
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.7e-37 Score=271.47 Aligned_cols=150 Identities=19% Similarity=0.272 Sum_probs=127.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC----cceEEeecCccCC-CCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD----KAYTVEELTEDSF-DGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~----~~~~v~~~~~~~~-~~~DvVf~a~~~~~ 113 (376)
||||||+|||||+|+||+|+|.+| |.+++..++|++++|+.+.... ....+...+++.+ .++|+||+|+|+++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H--P~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~ 78 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA 78 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC--TTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC--CCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHH
Confidence 489999999999999999999988 9999999999999999886422 1222333343333 47999999999999
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCCCCC------------------CcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHH
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRMVEN------------------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTII 175 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~~~~------------------~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta 175 (376)
+++++++ .+|++|||+|+|||+++. +.|++||+|+++++ ++++|||||||+|+
T Consensus 79 s~~~~~~--~~~~~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~~~~YGlpE~~r~~i~-------~~~~IanPgC~~t~ 149 (176)
T d1vkna1 79 SYDLVRE--LKGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIK-------NAQVVGNPGLVKGA 149 (176)
T ss_dssp HHHHHTT--CCSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHT-------TCSEEECCCTTTTT
T ss_pred HHHHHHh--hccceEEecCccccccchhhHHHhhccccccccccceeecCcHHhHHHHh-------cCCEEEccCcHHHH
Confidence 9999876 379999999999999762 35899999999998 68899999999999
Q ss_pred HHHHHhHHHHhCCCcEEEEEEEccccccChHh
Q 017153 176 CLMAATPLHRRAKVTRMVVSTYQAASGAGAAA 207 (376)
Q Consensus 176 ~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~ 207 (376)
++++|+||++.++| .+.||+|+++
T Consensus 150 ~~laL~PL~~~~gi--------~~~~g~~~~p 173 (176)
T d1vkna1 150 SGQAVQNMNIMFGL--------DETKGLEFTP 173 (176)
T ss_dssp HHHHHHHHHHHTTC--------CTTTTCCCCC
T ss_pred HHHHHhhHHHhcCC--------ccccccccCC
Confidence 99999999999987 5789999865
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.1e-33 Score=248.20 Aligned_cols=143 Identities=22% Similarity=0.304 Sum_probs=118.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec---CCCCCceeeec------CcceEEeecCc-c-CCCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---KRSAGKQLSFQ------DKAYTVEELTE-D-SFDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s---~~~~g~~~~~~------~~~~~v~~~~~-~-~~~~~DvVf~ 107 (376)
||||||+|||||+|+||+|+|.+| |++++..+.+ .+++|+.+... ..++.+...+. + ...++|++|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H--P~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~ 78 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH--PHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFL 78 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC--TTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC--CCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeec
Confidence 489999999999999999999998 9999988754 34678877541 12333333222 2 2468999999
Q ss_pred cCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCC-------------------CcEEeeccCHHhhcCcccCCCCCcEEEc
Q 017153 108 SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-------------------VPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~-------------------~~~~lpevN~~~i~~~~~~~~~~~iVa~ 168 (376)
|+|++.+.++++++.+.|++|||+|++||+++. +.|++||+|+++++ ++++|||
T Consensus 79 alp~~~s~~~~~~~~~~~~~vIDlSadfRl~~~~~~~~~y~~~~~~~~~~~~~vYglpE~~r~~i~-------~~~~IAn 151 (179)
T d2g17a1 79 ATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEWNVDKLN-------TANLIAV 151 (179)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHHCSCCSCHHHHHHCEECCGGGCHHHHT-------TCSEEEC
T ss_pred cccchhHHHHhhhhhhcCceeecccccccccccccccccccccccccccccccccCchhhhHHHHh-------cCCEEEc
Confidence 999999999999999999999999999999863 24999999999998 6889999
Q ss_pred CCchHHHHHHHHh-HHHHhCCCc
Q 017153 169 PNCSTIICLMAAT-PLHRRAKVT 190 (376)
Q Consensus 169 PgC~~ta~~l~L~-pL~~~~~i~ 190 (376)
||||+|+++++|+ ||.+.+.|+
T Consensus 152 PGCyaTa~~laL~~pl~~~gli~ 174 (179)
T d2g17a1 152 PGLLKGAAAQAVQCANIRFGFAE 174 (179)
T ss_dssp CCTTTTTHHHHHHHHHHHHTCCT
T ss_pred CCchHHHHHHHHHhHHHHcCCCC
Confidence 9999999999996 788877775
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.98 E-value=4.8e-34 Score=254.54 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=118.2
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCc-----ceE-EeecCccCCCCCcEEEEcC
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK-----AYT-VEELTEDSFDGVDIALFSA 109 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~-----~~~-v~~~~~~~~~~~DvVf~a~ 109 (376)
.++++||||+|||||+|+||+|+|.+| |++++..++|++++|+.+..... +.. ......+.+.++|+||+|+
T Consensus 2 s~~kikVaIlGATGyvG~elirLL~~H--P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~al 79 (183)
T d2cvoa1 2 SGEEVRIAVLGASGYTGAEIVRLLANH--PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCL 79 (183)
T ss_dssp CSSCEEEEEESCSSHHHHHHHHHHTTC--SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECC
T ss_pred CCCccEEEEECcccHHHHHHHHHHHhC--CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeecc
Confidence 456899999999999999999999998 99999999999999998864211 111 1121233457899999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcCCCCCCCCC-------------------CcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-------------------VPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~-------------------~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
|++.+.++++.+.+. .++||++++||+.+. +.|++||+|+++++ ++++|||||
T Consensus 80 p~~~s~~~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vyglpE~~r~~i~-------~a~~IANPg 151 (183)
T d2cvoa1 80 PHGTTQEIIKGLPQE-LKIVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGLTEVLRNEIR-------NARLVANPG 151 (183)
T ss_dssp SSSHHHHHHHTSCSS-CEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHHHHHHH-------HCSEEECCC
T ss_pred ccchHHHHHHHHHhc-CcccccchhhhccccchheeeccccccchhhhccccccCchHHHHHHh-------hCCEeeCCC
Confidence 999999999887655 577788888887542 35999999999998 688999999
Q ss_pred chHHHHHHHHhHHHHhCCCc
Q 017153 171 CSTIICLMAATPLHRRAKVT 190 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~ 190 (376)
||+|+++++|+||+..+|+.
T Consensus 152 C~~t~~~laL~PL~~~~gli 171 (183)
T d2cvoa1 152 LVKGASGQAVQNLNLMMGLP 171 (183)
T ss_dssp TTTTTHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHhhhhHHHhcCCC
Confidence 99999999999996655553
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=99.97 E-value=1.9e-32 Score=235.13 Aligned_cols=140 Identities=21% Similarity=0.263 Sum_probs=115.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcC-CCCCeEEEEEecCCCCCceeeecCcceEEee-cCccCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~-~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~-~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
|||||+|||||+|+||+++|++| +||.+++..++|+++.|+...+......+.. .+.+.+.++|+||+|+|+++++++
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~ 80 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKV 80 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHH
Confidence 78999999999999999977654 5799999999998899987766544443333 334457899999999999999999
Q ss_pred HHHHHhCCCe--EEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcE--EEcCCchHHHHHHH
Q 017153 118 GPIAVEKGSI--VVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL--IANPNCSTIICLMA 179 (376)
Q Consensus 118 ~~~~~~~G~~--VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~i--Va~PgC~~ta~~l~ 179 (376)
++++.++|++ |||+|++|||++++||++||+|++.|+....++.+..+ +++|+|++.+++++
T Consensus 81 ~~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~k~~~~~~~~p~~~~~~~~~a 146 (147)
T d1mb4a1 81 YPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGAAEPLRRTLRIILA 146 (147)
T ss_dssp HHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECTHHHHHHHHHHHHH
T ss_pred hHHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCCcceeeeccCcCHhHhHHHhc
Confidence 9999999975 99999999999999999999999998843222333444 59999999998875
|
| >d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=99.97 E-value=2.4e-30 Score=226.16 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=136.5
Q ss_pred chHHHHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 171 CSTIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
||+|+++++|+||.+.+.|+ .+++++++|+|||||++.+. +++ .++.++..+|++..|+|. ||
T Consensus 1 CyaT~~il~l~PL~~~gli~~~~i~i~a~SG~SGaGk~~~~~-------~~~-----~~~~~n~~~Y~~~~HrH~-pE-- 65 (165)
T d2cvoa2 1 CYPTSIQLPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEA-------NLY-----TEIAEGIHAYGIKGHRHV-PE-- 65 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGG-------GBH-----HHHTTCCEECSCSCCTHH-HH--
T ss_pred CchHHHHHHHHHHHHcCCCCCCCeEEEEeccccccccccchh-------hhh-----hhhhhceeccchhccccC-cH--
Confidence 99999999999999998875 79999999999999998764 232 456677889999999999 87
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCCc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFPT 324 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p~ 324 (376)
++|+++ +. ...+.++.|+||.+|++||++.++|++++++++.++++++|++ +|||+|++.. .+|+
T Consensus 66 -i~q~l~------~~-~~~~~~~~F~P~l~p~~RGil~ti~~~~~~~~~~~~i~~~~~~~Y~~~~FV~V~~~~---~~p~ 134 (165)
T d2cvoa2 66 -IEQGLS------EA-AESKVTISFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHLKSTYEGEEFVKLLNGS---SVPH 134 (165)
T ss_dssp -HHHHHH------HH-HTSCCCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSTT---CCCC
T ss_pred -HHHHhh------hc-cCCCccEEEEeeeccccceeEEecccccccccchHHHHHHHHHHhhhcceEEEecCC---CCCC
Confidence 666653 33 3467899999999999999999999999999999999998886 5999998643 4799
Q ss_pred cccccCCCceEEEEEEeccCCCCCCeEEEEEEech
Q 017153 325 PLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQ 359 (376)
Q Consensus 325 ~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DN 359 (376)
+++|.|||+|+|+.+. | ++++++++++++||
T Consensus 135 ~~~v~gTN~~~I~v~~-~---~~~~~~vi~s~iDN 165 (165)
T d2cvoa2 135 TRHVVGSNYCFMNVFE-D---RIPGRAIIISVIDN 165 (165)
T ss_dssp GGGTTTSSCEEEEEEE-C---SSTTEEEEEEEECT
T ss_pred hhHccCCCcEEEEEEE-e---CCCCEEEEEEEecC
Confidence 9999999999999875 4 24589999999999
|
| >d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=1.2e-29 Score=221.36 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=132.9
Q ss_pred chHHHHHHHHhHHHHhCCCc--EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 171 CSTIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~--~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
||+|+++++|+||.+.++|+ .+++++++|+|||||++.+. +++ .++.++..+|++..|+|. ||
T Consensus 1 CyaT~~~l~l~PLv~~gli~~~~i~i~a~SG~SGaGk~~~~~-------~~~-----~~~~~~~~~Y~~~~HrH~-pE-- 65 (163)
T d1vkna2 1 CYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVD-------YLF-----SEVNESLRPYNVAKHRHV-PE-- 65 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGG-------GBH-----HHHTTCCEECSCSCCTHH-HH--
T ss_pred CchHHHHHHHHHHHHcCCCCCCceEEEeeccccccccccccc-------ccc-----cccccccccchhhhcccc-HH--
Confidence 99999999999999998885 79999999999999998764 232 456677889999999999 88
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCCc
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFPT 324 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p~ 324 (376)
++|++ .+.- +.+.++.|+||.+|++||+++|+|++++ .+.++++++|++ +|||+|++. +.+|+
T Consensus 66 -i~q~l------~~~~-~~~~~~~F~Phl~p~~RGil~ti~~~~~--~s~~~i~~~~~~~Y~~~~fV~V~~~---~~~p~ 132 (163)
T d1vkna2 66 -MEQEL------GKIS-GKKVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFYKNEPFVHVLPM---GIYPS 132 (163)
T ss_dssp -HHHHH------HHHH-TSCCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHHTTCTTEEECCT---TCCCC
T ss_pred -HHHHH------Hhhc-CCcccEEEEEeeccccceeeeeeeeccc--ccchHHHHHHHHHHhhcCcEEEccc---cCCCC
Confidence 66665 3333 4678999999999999999999999875 478899888776 699999864 35799
Q ss_pred cccccCCCceEEEEEEeccCCCCCCeEEEEEEech
Q 017153 325 PLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQ 359 (376)
Q Consensus 325 ~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DN 359 (376)
+++|.|||+|+|+.... ++++++++++++||
T Consensus 133 ~~~V~gTN~~~I~v~~~----~~~~~~vi~saiDN 163 (163)
T d1vkna2 133 TKWCYGSNHVFIGMQME----ERTNTLILMSAIDN 163 (163)
T ss_dssp GGGGTTSSCEEEEEEEE----TTTTEEEEEEEECT
T ss_pred HhHccCCCcEEEEEEEc----CCCCEEEEEEEecC
Confidence 99999999999998763 34589999999999
|
| >d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=1.7e-29 Score=218.39 Aligned_cols=148 Identities=18% Similarity=0.180 Sum_probs=125.2
Q ss_pred chHHHHHHHHhHHHHhCCCc---EEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCC
Q 017153 171 CSTIICLMAATPLHRRAKVT---RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~---~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~ 247 (376)
||+|+++++|+||.+.+.|+ .+++++++|+|||||++.+. .++ ...+..+|++..|+|. ||
T Consensus 1 CyaTa~~l~L~PL~~~gli~~~~~i~i~a~SG~SGaG~~~~~~-------~~~-------~~~~~~~Y~~~~HrH~-pE- 64 (155)
T d2g17a2 1 CYPTAAQLSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAIS-------NSF-------CEVSLQPYGVFTHRHQ-PE- 64 (155)
T ss_dssp HHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCST-------TSG-------GGCSEEECSTTTCTHH-HH-
T ss_pred ChHHHHHHHHHHHHHcCCCCCCCceEEEeeeccccccccchhh-------hcc-------ccceeeeccccccccH-HH-
Confidence 99999999999999998875 57899999999999987653 222 2345789999999999 77
Q ss_pred CchHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh----CCCcEEeeCCCCCCCC
Q 017153 248 GYNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN----APGVVVIDDRASNHFP 323 (376)
Q Consensus 248 g~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~----~~~v~v~~~~~~~~~p 323 (376)
|++++ + .++.|+||.+|++||+++|+|++++++++.++++++|++ +|||+|.++ .+|
T Consensus 65 --I~q~l----------~---~~i~F~Phl~p~~RGIl~Ti~~~l~~~~s~~~i~~~~~~~Y~~e~FV~v~~~----~~p 125 (155)
T d2g17a2 65 --IAVHL----------G---AEVIFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQKAYGDKPLVRLYDK----GVP 125 (155)
T ss_dssp --HHHHH----------T---SCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSS----SCC
T ss_pred --HHHHh----------C---cCceeeecccccccccccccccccchhhhhHHHHHHHHHHHhhhhheEECCC----CCC
Confidence 55543 2 368999999999999999999999999999999888886 699999753 369
Q ss_pred ccccccCCCceEEEEEEeccCCCCCCeEEEEEEech
Q 017153 324 TPLEVSNKDDVAVGRIRRDVSQDGNHGLDIFVCGDQ 359 (376)
Q Consensus 324 ~~~~v~g~~~v~vg~~~~~~~~~~~~~~~~~~~~DN 359 (376)
++++|.|||+|+||... | ++++++++++||
T Consensus 126 ~~~~v~gtN~~~i~~~~-~-----~~~lvi~saiDN 155 (155)
T d2g17a2 126 ALKNVVGLPFCDIGFAV-Q-----GEHLIVVATEDN 155 (155)
T ss_dssp CGGGTTTSCCEEEEEEE-E-----TTEEEEEEEECT
T ss_pred cHhhcCCCCcEEEEEEE-e-----CCEEEEEEEccC
Confidence 99999999999999754 3 268999999999
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=5e-28 Score=207.51 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=108.0
Q ss_pred CEEEEECcccHHHHHHHHHH-hcCCCCCeEEEEEecCCCCCceeeecCcceEEee-cCccCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVL-SDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L-~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~-~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+||||+|||||||++|+++| .+++||..++++++|+++.|+.+.+....+.+.. .+.+.+.++|+||+|+|++.+.++
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~ 81 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI 81 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence 59999999999999999855 5557899999999999999988777554444433 233457899999999999999999
Q ss_pred HHHHHhCCCe--EEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCC--CcEEEcCCchHH
Q 017153 118 GPIAVEKGSI--VVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGK--GALIANPNCSTI 174 (376)
Q Consensus 118 ~~~~~~~G~~--VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~--~~iVa~PgC~~t 174 (376)
++++.++|++ |||+|++|||++++||++||||++.|+....++.+ -.++++|.|...
T Consensus 82 ~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~~~~ig~~~~~~~~~~ 142 (146)
T d1t4ba1 82 YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGAAEPLRRML 142 (146)
T ss_dssp HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCCHHHHHHH
T ss_pred hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCCceEEeccCcHHHHHH
Confidence 9999999975 99999999999999999999999998743222111 235677766554
|
| >d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=99.88 E-value=1.7e-23 Score=182.66 Aligned_cols=136 Identities=15% Similarity=0.266 Sum_probs=112.9
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+|++++++|+||+++|||+++.++|+|++||.|+.+ +..++|++||..+++
T Consensus 1 SCtT~~l~~~lkpL~~~fgI~~~~vtT~qa~s~~~~~~-----------------------~~~~~niip~~~~~~---- 53 (165)
T d1cf2o2 1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPAQVS-----------------------KGPINAIIPNPPKLP---- 53 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSCTTCTT-----------------------CCCSSCCEESSSSSS----
T ss_pred CChHHHHHHHHHHHHHHcCceEEEEEEEECCcCCcccc-----------------------ccccccccCCCcHHH----
Confidence 79999999999999999999999999999999998642 235789999987632
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcccccc
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVS 329 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~ 329 (376)
.+...|+.++| .++|+.+|+|||+++||+.+++++|+++++.+|++++|+++|++.+++.+....+|.+....
T Consensus 54 ----~~~~~e~~kil---~~~i~~tavRVPv~~~H~~~v~v~~~~~~t~eev~~~l~~~~~v~l~~~~~~~~~~~~~~~~ 126 (165)
T d1cf2o2 54 ----SHHGPDVKTVL---DINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVILISAEDGLTSTAEIMEY 126 (165)
T ss_dssp ----CTHHHHHHTTS---CCCEEEEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTTEEEECTTTTCCSHHHHHHH
T ss_pred ----HHHHHHhhhhc---CCcEEEEEEecCccceEEEEEEEEECCcCCHHHHHHHHHHCCCCccccCccCCCCCcchhhh
Confidence 36677788887 37899999999999999999999999999999999999999999999876433444444333
Q ss_pred CCCceEEEEEEec
Q 017153 330 NKDDVAVGRIRRD 342 (376)
Q Consensus 330 g~~~v~vg~~~~~ 342 (376)
+. ++||+|.|
T Consensus 127 ~~---dvGR~R~D 136 (165)
T d1cf2o2 127 AK---ELGRSRND 136 (165)
T ss_dssp HH---HHTCGGGC
T ss_pred cc---cCCCccCc
Confidence 33 37877755
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=99.86 E-value=7.7e-23 Score=177.08 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=104.9
Q ss_pred CCCEEEEECcccHHHHHH-HHHHhcCCCCCeEEEEEecCCCCCceeeec-CcceEEee--cC----ccCCCCCcEEEEcC
Q 017153 38 SAPSVAVVGVTGAVGQEF-LSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-DKAYTVEE--LT----EDSFDGVDIALFSA 109 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eL-lr~L~~~~~p~~~l~~v~s~~~~g~~~~~~-~~~~~v~~--~~----~~~~~~~DvVf~a~ 109 (376)
+++||||+| ||.+|+++ +++|..+ |.+++++++|++..++.+.+. ...+.+.. .+ ..++.++|+||+||
T Consensus 3 kkirvaIIG-aG~ig~~~~~~~l~~~--~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 3 QKLKVAIIG-SGNIGTDLMIKVLRNA--KYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp SCEEEEEEC-CSHHHHHHHHHHHHHC--SSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCcEEEEEc-CcHHHHHHHHHHHhhC--CcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcC
Confidence 369999999 69999875 5777666 999999999987766543321 11222221 11 22356899999999
Q ss_pred CCchhhh--hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHHHhHHHH
Q 017153 110 GGSISKK--FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (376)
Q Consensus 110 ~~~~s~~--~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~L~pL~~ 185 (376)
|++...+ ++.++.++|+.|||+|++. ++||++||+|.+++... .+.++|+||||.+..++.+|+|+++
T Consensus 80 pag~h~~~~~~~~aa~~G~~VID~s~a~----~vplvVPevN~~~~~~~----~n~nlitc~~~~tip~~~al~~~~~ 149 (157)
T d1nvmb1 80 SASAHVQNEALLRQAKPGIRLIDLTPAA----IGPYCVPVVNLEEHLGK----LNVNMVTYAGNLDIMTSAALATAER 149 (157)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEECSTTC----SSCBCCHHHHTTTTTTC----SEEECCCTCHHHHHHHHHHHHHHHH
T ss_pred CchhHHHhHHHHHHHHcCCEEEEccccc----cceEEccCcCHHHHhcC----CCCCeEecCchHHHHHHHHHHHHHH
Confidence 9876654 5577789999999999974 68999999999988742 1357999999999999999999987
|
| >d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=1e-20 Score=164.29 Aligned_cols=123 Identities=13% Similarity=0.278 Sum_probs=96.0
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|++++++|+||+++|||+++.++|+|++||+|+.... .....++.+.++|..||..
T Consensus 1 CsT~~l~~~lkpL~~~fgi~rv~vtt~qa~s~~g~~~~~--------------~~~~~~~~p~~~~~~~~~~-------- 58 (162)
T d1b7go2 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKKG--------------PINSLVPDPATVPSHHAKD-------- 58 (162)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEEEEEEEESSCTTCCSCC--------------CSSCCEESSSSSSCTHHHH--------
T ss_pred CcHHHHHHHHHHHHHHhCEEEEEEEEEeeccCCcccccc--------------cccccccccccccccccee--------
Confidence 999999999999999999999999999999999865322 1123333334444433321
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCccc
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPL 326 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~ 326 (376)
...+++ +++|+.+|+|||+++||+.+++++|+++++.+|++++|+++|++.+++......+|.+.
T Consensus 59 ---------v~~~~p--~l~i~~tavRVPv~~~h~~~~~~~~~~~~~~eev~~~l~~~~~i~l~~~~~~~~~~~~i 123 (162)
T d1b7go2 59 ---------VNSVIR--NLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAEL 123 (162)
T ss_dssp ---------HHTTST--TCEEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTTEEEECSSSSCCSHHHH
T ss_pred ---------eeccCC--CceEEEEEEEcCCCcceEEEEEEEECCcCCHHHHHHHHHhCCCCcccCcccCCCcchhh
Confidence 234454 56899999999999999999999999999999999999999999999765433344443
|
| >d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=1.4e-19 Score=156.71 Aligned_cols=134 Identities=15% Similarity=0.189 Sum_probs=108.7
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+||+++++|+||++.+++.++++. +++|.. ..+.+..++|++||... .|+
T Consensus 1 SC~T~~l~~~L~pL~~~~~~~rvv~v-----r~a~dp--------------------~~~~~~i~~nviP~~~~---~~~ 52 (162)
T d2czca1 1 SCNTTGLVRTLSAIREYADYVYAVMI-----RRAADP--------------------NDTKRGPINAIKPTVEV---PSH 52 (162)
T ss_dssp CHHHHHHHHHHHHHGGGEEEEEEEEE-----EESSCT--------------------TCCSCCCSSCCEECCSS---SCT
T ss_pred CChHHHHHHHHHHHHHHhCceEEEEE-----CcccCc--------------------ccccCCcccccccCCCC---CCc
Confidence 79999999999999999998887764 333321 22334568999999754 467
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhCCCcEEeeCCCCCCCCcccccc
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNAPGVVVIDDRASNHFPTPLEVS 329 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~~~v~v~~~~~~~~~p~~~~v~ 329 (376)
..+|++. + +++.|+.||+||||++||+.+++++|+++++.+|++++|+++|+|.+++++....+|++....
T Consensus 53 ~~~d~~~-------v--~~i~v~~t~vRVPv~~gH~~~v~ve~~~~~~~~ev~~~l~~~pgi~v~d~~~~~~~~~~~~~~ 123 (162)
T d2czca1 53 HGPDVQT-------V--IPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEF 123 (162)
T ss_dssp HHHHHTT-------T--SCCCEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTTEEEECGGGTCCSHHHHHHH
T ss_pred cchhhcc-------c--CCeEEEEEEEEeeeeeeeEEEEEEEECCCCCHHHHHHHHHHCCCCEEecCCCCCCCccchhhh
Confidence 7777753 2 468999999999999999999999999999999999999999999999876555678887667
Q ss_pred CCCceEEEEEEecc
Q 017153 330 NKDDVAVGRIRRDV 343 (376)
Q Consensus 330 g~~~v~vg~~~~~~ 343 (376)
|.+ +||+|.|-
T Consensus 124 grD---vGR~R~Dl 134 (162)
T d2czca1 124 ARD---LHREWNNL 134 (162)
T ss_dssp HHH---TTCGGGCC
T ss_pred hcc---CCCCcCcc
Confidence 775 89998763
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.74 E-value=7.2e-19 Score=154.74 Aligned_cols=145 Identities=12% Similarity=0.077 Sum_probs=104.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee---------ecC--------cceEEeecCccCCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS---------FQD--------KAYTVEELTEDSFDG 101 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~---------~~~--------~~~~v~~~~~~~~~~ 101 (376)
++||||+|+ |++|+.++|+|.++ |+++++++.+......... ... ..+.+...-++.+.+
T Consensus 1 MIKVaINGf-GRIGR~v~Ral~~~--~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~ 77 (178)
T d1b7go1 1 MVNVAVNGY-GTIGKRVADAIIKQ--PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT 77 (178)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH
T ss_pred CeEEEEECC-CHHHHHHHHHHHhC--CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhc
Confidence 389999998 99999999999998 9999999986543211100 000 011111100111257
Q ss_pred CcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHH--
Q 017153 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA-- 179 (376)
Q Consensus 102 ~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~-- 179 (376)
+|+|++|+|.+.+++.++.++++|+|+|- +++---+.-....+.++|++++... ...++|||.+|+|+|+++.
T Consensus 78 vDiViecTG~f~~~e~a~~hl~~G~KvIi-~~~~~~~~~~~t~V~GvN~~~~~~~----~~~~vVSnAscttn~lap~~~ 152 (178)
T d1b7go1 78 SDIVVDTTPNGVGAQYKPIYLQLQRNAIF-QGGEKAEVADISFSALCNYNEALGK----KYIRVVSESIVVPENIDAIRA 152 (178)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEEE-CTTSCGGGSSCEECHHHHHHHHTTC----SEEEECCTTTHHHHHHHHHHH
T ss_pred CCEEEECCCCcCCHHHHHHHHHcCCEEEE-ECCCCccccCCeEEeCcchHHhcCC----CCCEEEeCCcccccccHHHHH
Confidence 99999999999999999999999999884 4432111113478999999986421 0237999999999999999
Q ss_pred ----------HhHHHHhCCCcE
Q 017153 180 ----------ATPLHRRAKVTR 191 (376)
Q Consensus 180 ----------L~pL~~~~~i~~ 191 (376)
++.|.+.|||++
T Consensus 153 ~~~~~~~~~~~kv~~~~~gi~~ 174 (178)
T d1b7go1 153 SMKLMSAEDSMRITNESLGILK 174 (178)
T ss_dssp HTTCSCHHHHHHHHHHHTTCCC
T ss_pred HHHhhccccceeeeccccceee
Confidence 999999999974
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=2.4e-17 Score=142.68 Aligned_cols=135 Identities=17% Similarity=0.237 Sum_probs=106.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-------------Cc---eee-------ecCcceEEe-ec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLS-------FQDKAYTVE-EL 94 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-------------g~---~~~-------~~~~~~~v~-~~ 94 (376)
+|||||.|+ |++||.++|++.++ |+++++++...... |+ .+. .+++.+.+. .-
T Consensus 1 tikigINGF-GRIGR~v~R~~~~~--~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~ 77 (166)
T d1gado1 1 TIKVGINGF-GRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAER 77 (166)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTC--SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECC-cHHHHHHHHHHhhC--CCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCC
Confidence 589999999 99999999999988 99999999864221 11 111 123445554 23
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
++.+ |. ++|+|++|+|...+++.+..++++|++-|-+|++- .++.+..++++|++++. ..++||+++
T Consensus 78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~--~d~~~~iV~GvN~~~~~-------~~~iiS~aS 148 (166)
T d1gado1 78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS--KDNTPMFVKGANFDKYA-------GQDIVSNAS 148 (166)
T ss_dssp SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC--SSSCCBCCTTTTGGGCC-------SCSEEECCC
T ss_pred ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccc--cccCCEEEeCccccccC-------CCCEEEecc
Confidence 4554 43 89999999999999999999999999866688774 45578899999999987 467999999
Q ss_pred chHHHHHHHHhHHHH
Q 017153 171 CSTIICLMAATPLHR 185 (376)
Q Consensus 171 C~~ta~~l~L~pL~~ 185 (376)
|+|+|+++.++.|.+
T Consensus 149 CTTnclaPv~kvl~~ 163 (166)
T d1gado1 149 NETGYSNKVLDLIAH 163 (166)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 999999999988865
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=99.71 E-value=3.6e-19 Score=155.79 Aligned_cols=141 Identities=16% Similarity=0.070 Sum_probs=103.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc---------eeeecCc---------ceEEeecCccCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK---------QLSFQDK---------AYTVEELTEDSFD 100 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~---------~~~~~~~---------~~~v~~~~~~~~~ 100 (376)
|+||||+|+ |++|+.++|+|.++ ++++++++........ ....... .+.+..-..+.+.
T Consensus 1 M~~VgINGf-GRIGR~v~R~l~~~--~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 77 (171)
T d1cf2o1 1 MKAVAINGY-GTVGKRVADAIAQQ--DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD 77 (171)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTS--SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred CeEEEEEcC-cHHHHHHHHHHHhC--CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc
Confidence 379999998 99999999999888 8999999986432211 0000000 0111100011135
Q ss_pred CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCC-CcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHHH
Q 017153 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179 (376)
Q Consensus 101 ~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~-~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l~ 179 (376)
++|+|++|+|.+.+.+.++.++++|+++|-.+++- +++ ....+.++|++++..- +..+|||++|+|+|+++.
T Consensus 78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~--~~~~~~~~v~GvN~~~~~~~-----~~~ivS~aSCTTNclapv 150 (171)
T d1cf2o1 78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK--HEDIGLSFNSLSNYEESYGK-----DYTRVVIVPENVDAVRAI 150 (171)
T ss_dssp TCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC--HHHHSCEECHHHHHHHHTTC-----SEEEECTHHHHHHHHHHH
T ss_pred CCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCC--ccCCCceeEeccChhhhcCC-----CCcEEEECCchHHhHHHH
Confidence 89999999999999999999999999999665542 111 2356889999887631 456899999999999999
Q ss_pred HhHHHHhCCC
Q 017153 180 ATPLHRRAKV 189 (376)
Q Consensus 180 L~pL~~~~~i 189 (376)
+++|+++||+
T Consensus 151 ~kvl~~~fGi 160 (171)
T d1cf2o1 151 LEMEEDKYKS 160 (171)
T ss_dssp TTSCSCHHHH
T ss_pred HHHHHHHcCc
Confidence 9999999986
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=99.69 E-value=1.2e-16 Score=139.08 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=107.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc----------------eee-------ecCcceEEe-ecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----------------QLS-------FQDKAYTVE-ELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~----------------~~~-------~~~~~~~v~-~~~ 95 (376)
+||||.|+ |++|+.++|++.++ |+++++++........ .+. ..++.+.+. ..+
T Consensus 2 ikIgINGf-GRIGR~v~R~~l~~--~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~ 78 (171)
T d3cmco1 2 VKVGINGF-GRIGRNVFRAALKN--PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERD 78 (171)
T ss_dssp EEEEEESC-SHHHHHHHHHHTTC--TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECC-CHHHHHHHHHHhhC--CCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCC
Confidence 79999999 99999999999988 9999999986532211 000 123345443 334
Q ss_pred ccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 96 EDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 96 ~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
+.+ |. ++|+|++|+|...+.+-+..++++|++-|-+|++. .++.+..++++|+++++.- +.++||+++|
T Consensus 79 p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~--~d~~~t~V~GvN~~~~~~~-----~~~iIS~aSC 151 (171)
T d3cmco1 79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPA--KNEDITIVMGVNQDKYDPK-----AHHVISNASN 151 (171)
T ss_dssp GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSCSEECCTTTSGGGCCTT-----TCCEEECCCT
T ss_pred HHHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEeccc--ccccceeeeccchheecCC-----CCeEEEehhH
Confidence 443 53 79999999999999999999999999755578764 3455689999999999731 4789999999
Q ss_pred hHHHHHHHHhHHHHhCCCc
Q 017153 172 STIICLMAATPLHRRAKVT 190 (376)
Q Consensus 172 ~~ta~~l~L~pL~~~~~i~ 190 (376)
+|+|+++.++.| +|+|+
T Consensus 152 Ttn~laPv~kvl--~fgi~ 168 (171)
T d3cmco1 152 ETGYSHRVVDLA--AYIAS 168 (171)
T ss_dssp THHHHHHHHHHH--HHHHH
T ss_pred HHhHHHHHHHHH--HhhHh
Confidence 999999999988 38775
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.68 E-value=7.6e-17 Score=142.87 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=109.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC--CCCeEEEEEecCCCC--------------Cc---eeee--------------
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKRSA--------------GK---QLSF-------------- 84 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~--~p~~~l~~v~s~~~~--------------g~---~~~~-------------- 84 (376)
|+|||||.|+ |++|+.++|.+.+++ .+.++++++...... |+ .+..
T Consensus 1 M~ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i 79 (190)
T d1k3ta1 1 MPIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLV 79 (190)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEE
T ss_pred CCeEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceE
Confidence 3589999999 999999999887653 267999988754321 11 1100
Q ss_pred -cCcceE-Ee-ecCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcc
Q 017153 85 -QDKAYT-VE-ELTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157 (376)
Q Consensus 85 -~~~~~~-v~-~~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~ 157 (376)
.+..+. +. .-+|.+ |. ++|+|++|+|.+.+++.+..++++|++-|-+|++. +++.+..|+++|++.++..
T Consensus 80 ~~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~--~~~~~tiV~GVN~~~y~~~- 156 (190)
T d1k3ta1 80 VNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA--SGGAKTLVMGVNHHEYNPS- 156 (190)
T ss_dssp ETTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSSCEECCTTTTGGGCCTT-
T ss_pred EcCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCC--cccCCeEEeccCHhhcCCc-
Confidence 011111 11 234444 43 89999999999999999999999999866678875 4567899999999999741
Q ss_pred cCCCCCcEEEcCCchHHHHHHHHhHHHHhCCCc
Q 017153 158 VGMGKGALIANPNCSTIICLMAATPLHRRAKVT 190 (376)
Q Consensus 158 ~~~~~~~iVa~PgC~~ta~~l~L~pL~~~~~i~ 190 (376)
+.+|||+.+|+|+|+++.++.|+..|+++
T Consensus 157 ----~~~IIS~ASCTtn~lapv~kvi~~~f~~~ 185 (190)
T d1k3ta1 157 ----EHHVVSNADNEWGYSHRVVDLVRHMASKD 185 (190)
T ss_dssp ----TCSEEECCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ----cCcEEEchhHhhhHHHHHHHHHHHHhccc
Confidence 46899999999999999999999888776
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=99.67 E-value=8.7e-17 Score=139.73 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=108.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------------Cc---eee-------ecCcceEEe-ecC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------------GK---QLS-------FQDKAYTVE-ELT 95 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------------g~---~~~-------~~~~~~~v~-~~~ 95 (376)
||||.|+ |++||.++|.+.++ + ++++++...... |+ .+. ..++.+.+. ..+
T Consensus 2 kIgINGf-GRIGR~~~R~~~~~--~-~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~ 77 (169)
T d1dssg1 2 KIGINGF-GRIGRLVLRAALEM--G-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMK 77 (169)
T ss_dssp CEEEECC-SHHHHHHHHHHHHH--T-CCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEECC-cHHHHHHHHHHHhC--C-CcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCC
Confidence 7999999 99999999999886 3 689888754211 11 111 123445553 334
Q ss_pred ccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 96 EDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 96 ~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
+++ |. ++|+|++|+|...+.+.+..++++|++-|-+|++. .+.+..+.++|+++++. +.++||+++|
T Consensus 78 p~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~---~d~~~iV~GVN~~~~~~------~~~IIS~aSC 148 (169)
T d1dssg1 78 PENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS---ADAPMFVCGVNLEKYSK------DMKVVSNASN 148 (169)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC---SSSCBCCTTTSGGGCCT------TCCEEECCCT
T ss_pred hHHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCc---cccceeeecccccccCC------CCCEEEChhH
Confidence 444 53 89999999999999999999999999876688874 35678999999999974 5789999999
Q ss_pred hHHHHHHHHhHHHHhCCCcE
Q 017153 172 STIICLMAATPLHRRAKVTR 191 (376)
Q Consensus 172 ~~ta~~l~L~pL~~~~~i~~ 191 (376)
+|+|+++.++.|++.|+|+.
T Consensus 149 Ttn~laP~~k~l~~~fgIe~ 168 (169)
T d1dssg1 149 EFGYSQRVIDLIKHMQKVDS 168 (169)
T ss_dssp THHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999863
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.67 E-value=5.4e-16 Score=135.15 Aligned_cols=139 Identities=17% Similarity=0.229 Sum_probs=105.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-------------Cc---eee--------ecCcceEEe-ec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLS--------FQDKAYTVE-EL 94 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-------------g~---~~~--------~~~~~~~v~-~~ 94 (376)
|||||.|. |++|+.++|.+.+++.+.++++++...... |+ .+. ..++.+.+. .-
T Consensus 1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~ 79 (172)
T d1rm4a1 1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 79 (172)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence 69999999 999999999888765577999999865321 11 110 123345543 33
Q ss_pred CccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCC
Q 017153 95 TEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (376)
Q Consensus 95 ~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~Pg 170 (376)
++.+ |. ++|+|++|+|.+.+++.+..++++|++-|-+|++. +++.+..|.++|++.++. +.++||+.+
T Consensus 80 ~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~--k~~~~tiV~GVN~~~~~~------~~~iIS~aS 151 (172)
T d1rm4a1 80 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG--KGDIPTYVVGVNEEGYTH------ADTIISNAS 151 (172)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCC--BSSCCBCCTTTTGGGCCT------TCSEEECCC
T ss_pred ChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeeccc--ccceeeEEeecchhhcCC------CCCEEEccc
Confidence 4554 42 79999999999999999999999999755578875 456788999999999974 578999999
Q ss_pred chHHH---HHHHHhHHHHhC
Q 017153 171 CSTII---CLMAATPLHRRA 187 (376)
Q Consensus 171 C~~ta---~~l~L~pL~~~~ 187 (376)
||+++ +++.|+-|+++|
T Consensus 152 CTtn~~~~l~pv~~vi~~~f 171 (172)
T d1rm4a1 152 NEWGYSQRVVDLADIVANKW 171 (172)
T ss_dssp TTHHHHHHHHHHHHHHHHTC
T ss_pred chhccHhHhHHHHHHHHhhc
Confidence 99554 777777777765
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=6e-18 Score=148.05 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=103.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCce---------eeecC-c--------ceEEeecCccCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ---------LSFQD-K--------AYTVEELTEDSF 99 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~---------~~~~~-~--------~~~v~~~~~~~~ 99 (376)
|++||||+|+ |++|+.++|.|.++ |+++++++.+....... ..... . .+.+...-++.+
T Consensus 1 M~irIaINGf-GRIGR~v~Ral~~~--~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 1 MKVKVGVNGY-GTIGKRVAYAVTKQ--DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTC--TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred CcEEEEEECC-CHHHHHHHHHHHhC--CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 4699999999 99999999999988 99999999864322110 00000 0 010000001113
Q ss_pred CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCC-CcEEeeccCHHhhcCcccCCCCCcEEEcCCchHHHHHH
Q 017153 100 DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVEN-VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLM 178 (376)
Q Consensus 100 ~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~-~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ta~~l 178 (376)
.++|+|++|+|.+.+.+.++.++++|+++|-.|++- .++ .+..+.++|++++..- +...|++.||+|+|+++
T Consensus 78 ~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~--~~~~~~t~v~GvNh~~~~~~-----~~~~v~scsctTn~lap 150 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEK--ADVAEVSFVAQANYEAALGK-----NYVRVVVIPENIDAIRA 150 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSC--GGGSSEEECHHHHGGGGTTC-----SEEEECTHHHHHHHHHH
T ss_pred ccCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCC--cccCCCeeEecccchhhcCC-----CceEEEecCchHHHHHH
Confidence 589999999999999999999999999999777752 122 3679999999887620 22234555559999999
Q ss_pred HHhHHHHhCCCcEE
Q 017153 179 AATPLHRRAKVTRM 192 (376)
Q Consensus 179 ~L~pL~~~~~i~~v 192 (376)
.++.|.+.|||+++
T Consensus 151 ~~kvld~~~gIe~~ 164 (172)
T d2czca2 151 MFELADKWDSIKKT 164 (172)
T ss_dssp HTTCSCHHHHHHHH
T ss_pred HHHHHhhhcCeeEe
Confidence 99999999999753
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=99.66 E-value=2.7e-16 Score=136.63 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=104.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------------Cc---eee-------ecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------------GK---QLS-------FQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------------g~---~~~-------~~~~~~~v~-~ 93 (376)
|+||||+|+ |++|+.++|++.++ +.++++++..+... |+ .+. ..++.+.+. .
T Consensus 1 kikIgINGF-GRIGR~v~R~~~~~--~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~ 77 (169)
T d1u8fo1 1 KVKVGVNGF-GRIGRLVTRAAFNS--GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQE 77 (169)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH--CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred CcEEEEECC-cHHHHHHHHHHHHC--CCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEEC
Confidence 589999999 99999999988887 89999999764211 11 111 123345543 2
Q ss_pred cCccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 94 LTEDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 94 ~~~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
-++++ |. ++|+|++|+|.+.+.+.+..++++|++-|-+|++. .+.+..+.++|+++++. +.++||+.
T Consensus 78 ~~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~---~d~~tiV~GvN~~~~~~------~~~iIS~a 148 (169)
T d1u8fo1 78 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS---ADAPMFVMGVNHEKYDN------SLKIISNA 148 (169)
T ss_dssp SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC---SSSCBCCTTTTGGGCCT------TCSEEECC
T ss_pred CChhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccc---cccceEEeecCHHHcCC------CCCEEECc
Confidence 23443 53 79999999999999999988899999866678764 35678899999999984 56899999
Q ss_pred CchHHHHHHHHhHHHH
Q 017153 170 NCSTIICLMAATPLHR 185 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~ 185 (376)
+|+|+|+++.++.|..
T Consensus 149 SCTtn~~aPv~~vl~~ 164 (169)
T d1u8fo1 149 SNEFGYSNRVVDLMAH 164 (169)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999988854
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=99.64 E-value=5.7e-16 Score=134.61 Aligned_cols=137 Identities=15% Similarity=0.185 Sum_probs=105.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-------------Cc---eee-------ecCcceEEe-ecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLS-------FQDKAYTVE-ELT 95 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-------------g~---~~~-------~~~~~~~v~-~~~ 95 (376)
|||||+|+ |++||.++|+|.+ +.++++++...... |+ .+. ..++.+.+. ..+
T Consensus 1 ikigINGf-GRIGR~~~R~l~~---~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~ 76 (168)
T d2g82a1 1 MKVGINGF-GRIGRQVFRILHS---RGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD 76 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHH---HTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEECC-cHHHHHHHHHHhc---CCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCC
Confidence 79999999 9999999999887 56899998754221 11 111 123344553 334
Q ss_pred ccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 96 EDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 96 ~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
+++ | .++|+|++|+|...+.+.+..++++|++-|-+|++. +++.+..+.++|+++++.. +.++||+.+|
T Consensus 77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~--kd~~~~iV~GvN~~~y~~~-----~~~IIS~ASC 149 (168)
T d2g82a1 77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA--KGEDITIVMGVNHEAYDPS-----RHHIISNASN 149 (168)
T ss_dssp GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSCSEECCTTTTGGGCCTT-----TCCEEECCCT
T ss_pred hHHCcccccCCceeEeccccccchHHhhhhhccccceeeecccc--ccccceeEeeccHHHccCC-----CCcEEEeccc
Confidence 443 5 379999999999999999999999999866678774 4556789999999999741 4689999999
Q ss_pred h---HHHHHHHHhHHHHhC
Q 017153 172 S---TIICLMAATPLHRRA 187 (376)
Q Consensus 172 ~---~ta~~l~L~pL~~~~ 187 (376)
+ |+|+++.|+.|++++
T Consensus 150 T~~~tN~laPv~k~i~~k~ 168 (168)
T d2g82a1 150 EWGYANRVADLVELVLRKG 168 (168)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred cCccHHHHHHHHHHHhhcC
Confidence 9 899999999998863
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.60 E-value=2.2e-15 Score=130.51 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=104.3
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------------Cc---eee-------ecCcceEEe-ecC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------------GK---QLS-------FQDKAYTVE-ELT 95 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------------g~---~~~-------~~~~~~~v~-~~~ 95 (376)
||||.|+ |++||.++|.+.++ |.++++++..+... |+ .+. ..++.+.+. .-+
T Consensus 2 kigINGf-GRIGR~v~R~~~~~--~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~ 78 (166)
T d2b4ro1 2 KLGINGF-GRIGRLVFRAAFGR--KDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD 78 (166)
T ss_dssp EEEEECC-SHHHHHHHHHHHTC--SSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred eEEEECC-CHHHHHHHHHHhhC--CCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCC
Confidence 7999999 99999999999988 99999999864221 11 111 123445553 334
Q ss_pred ccC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCc
Q 017153 96 EDS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (376)
Q Consensus 96 ~~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC 171 (376)
+.+ |. ++|+|++|+|...+++.++.++++|++-|-+|++. .++.+..+.++|++.++. +.++||+++|
T Consensus 79 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~--kd~~~tiV~GVN~~~~~~------~~~IIS~AS~ 150 (166)
T d2b4ro1 79 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP--KDDTPIYVMGINHHQYDT------KQLIVSNASN 150 (166)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC--SSSCCBCCTTTTGGGCCT------TCCEEECCCT
T ss_pred hHHccccccCCCEEEEecccccchhhhhhhhccCCCEEEEeccc--ccccceeeeecchhhcCC------CCCEEEChhH
Confidence 544 53 89999999999999999999999999866688876 356789999999999984 5789999999
Q ss_pred hHHHHHHHHhHHHHhCCC
Q 017153 172 STIICLMAATPLHRRAKV 189 (376)
Q Consensus 172 ~~ta~~l~L~pL~~~~~i 189 (376)
+. ++.++.|++.|+|
T Consensus 151 ~~---ap~~kvl~~~fgI 165 (166)
T d2b4ro1 151 EW---GYSNRVLDLAVHI 165 (166)
T ss_dssp TH---HHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHcCc
Confidence 64 4667778888776
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=7.7e-15 Score=127.22 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=102.6
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-------------Cc---eee-------ecCcceEEe-ecCc
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLS-------FQDKAYTVE-ELTE 96 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-------------g~---~~~-------~~~~~~~v~-~~~~ 96 (376)
||||.|+ |++||.++|.+.++..|.++++++.+.... |+ .+. .+++.+.+. .-++
T Consensus 2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence 8999999 999999999887654488999999754221 11 111 123445554 2335
Q ss_pred cC--CC--CCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCch
Q 017153 97 DS--FD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (376)
Q Consensus 97 ~~--~~--~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~ 172 (376)
++ |. ++|+|++|+|...+.+.+..++++|++-|-+|++. +++.+..|.++|+++++. +.++|||.+|+
T Consensus 81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~--kd~~~tiV~GvN~~~~~~------~~~iiS~aSct 152 (169)
T d1hdgo1 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPA--KGEDITVVIGCNEDQLKP------EHTIISCASNE 152 (169)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC--BSCSEECCTTTTGGGCCT------TCCEEECCCTT
T ss_pred hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEeccc--CCCcceeEEecchhhcCC------cCcEEEchhHh
Confidence 44 42 79999999999999999999999999755578875 345578999999999984 57899999999
Q ss_pred HHHHHHHHhHHHH
Q 017153 173 TIICLMAATPLHR 185 (376)
Q Consensus 173 ~ta~~l~L~pL~~ 185 (376)
+.++++.+..|..
T Consensus 153 tn~~a~v~~vi~~ 165 (169)
T d1hdgo1 153 YGYSNRVVDTLEL 165 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 9998887755443
|
| >d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=99.59 E-value=2.3e-15 Score=129.09 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=98.8
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+++|+++.++.|+++|||+...++|+|++++.. ..+|. .+ .+..+.+|..+.|+||+.+++.
T Consensus 1 CTTNclaP~~kvl~~~fgI~~g~mTTiHayT~~Q-~l~D~-------~~----~~~~Rr~Raa~~niIPttTgAa----- 63 (164)
T d1u8fo2 1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQ-KTVDG-------PS----GKLWRDGRGALQNIIPASTGAA----- 63 (164)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTS-BSSSC-------CC----TTCGGGGSBTTTCCEEEECCTT-----
T ss_pred ChhHHHHHHHHHHHhhcCeeEEEEEeeecccCcc-ccccc-------cc----cCccccCCCCcCcceeccccHH-----
Confidence 9999999999999999999999999999999984 44542 11 1234668889999999998853
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN 307 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~ 307 (376)
|+ +.+++|.+++++...++|||+..|.+.+++++++++++.||++++|++
T Consensus 64 ----kA---v~~vlP~L~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~eevn~~l~~ 113 (164)
T d1u8fo2 64 ----KA---VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQ 113 (164)
T ss_dssp ----TT---HHHHSGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred ----HH---HHHhChhhcCCccceEEecCCCCcceeeEEEEEcCcCCHHHHHHHHHH
Confidence 33 578899999999999999999999999999999999999999999997
|
| >d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=99.57 E-value=4.6e-15 Score=127.47 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=99.5
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+|+|+++.++.|+++|||+...++|+|++++. ++.+|. .+ .+.+++|..+.|+||+.+++
T Consensus 1 CTTNclaP~~kil~~~fgI~~g~~tTiH~~t~~-Q~l~D~-------~~-----~d~rr~Rsa~~niIPt~Tga------ 61 (162)
T d2g82a2 1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTND-QRLLDL-------PH-----KDLRRARAAAINIIPTTTGA------ 61 (162)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT-SBSSSC-------CC-----SSTTTTSBGGGCCEEECCCH------
T ss_pred ChhHhHHHHHHHHHhhcCeeEEEEEeeccccCc-cccCCC-------CC-----CCccccchhhcccCcccCcc------
Confidence 999999999999999999999999999999998 444552 11 25678888999999999884
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHhC
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKNA 308 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~~ 308 (376)
.|+ +.+++|++++++.+.++|||+..|.+.+++++++++++.|||+++|+++
T Consensus 62 ---aka---i~~vlP~L~gki~g~a~RVPt~nvS~vDl~~~l~k~~s~eeIn~~lk~a 113 (162)
T d2g82a2 62 ---AKA---TALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAA 113 (162)
T ss_dssp ---HHH---HHHHCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred ---chh---hchhhHhhCCCceeEEEeecccccceEEEEEEecCcCCHHHHHHHHHHH
Confidence 233 5889999999999999999999999999999999999999999999863
|
| >d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.57 E-value=5.9e-15 Score=127.80 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=99.0
Q ss_pred CchHHHHHHHHhHH-HHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCC
Q 017153 170 NCSTIICLMAATPL-HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248 (376)
Q Consensus 170 gC~~ta~~l~L~pL-~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g 248 (376)
+|+++|+++.++.| +++|||+...++|+|++++..+ .+|. ....+.+.+|..+.|+||+.+++
T Consensus 1 SCTTNclaP~~kvL~~~~fgI~~g~mtTvHa~T~~Q~-~lD~-----------~~~~d~Rr~Raa~~nIIPtsTgA---- 64 (169)
T d1k3ta2 1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQK-TVDG-----------VSVKDWRGGRAAAVNIIPSTTGA---- 64 (169)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSB-SSSC-----------CCSSCTGGGSBGGGCCEEEECSH----
T ss_pred CcHHHHHHHHHHHhhccccceeEEEEEEeccccCCCc-cccc-----------ccCCCCcCccccccccccccchH----
Confidence 69999999999998 7889999999999999999843 3441 11235677899999999999884
Q ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh
Q 017153 249 YNEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN 307 (376)
Q Consensus 249 ~~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~ 307 (376)
.|+ +.+++|.+++++...++|||+..|.+.+++++++++++.||++++|++
T Consensus 65 -----aka---v~~vlP~L~gKi~g~a~RVPt~nvS~vDLt~~l~k~~t~eein~~~~~ 115 (169)
T d1k3ta2 65 -----AKA---VGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKR 115 (169)
T ss_dssp -----HHH---HHHHSGGGTTTEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHH
T ss_pred -----HHH---HHHhccccCCCccceeecccccccceeeeeeeccccchhhHHHHHHHH
Confidence 233 588899999999999999999999999999999999999999999997
|
| >d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=99.57 E-value=4.1e-15 Score=127.93 Aligned_cols=113 Identities=12% Similarity=0.177 Sum_probs=99.5
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~ 249 (376)
+|+++|+++.++.|+++|||+...++|+|++++. +..+|. .+ .+.+.+|..+.|+||+.+++
T Consensus 1 SCTTN~laP~~kvl~~~fgI~~g~mtTvHa~t~~-Q~l~D~-------~~-----~d~r~~Raa~~niIP~sTgA----- 62 (162)
T d1obfo2 1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNN-QVLTDV-------YH-----EDLRRARSATMSMIPTKTGA----- 62 (162)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTT-SCSSCC-------CC-----SSTTTTSCTTTCCEEEECCH-----
T ss_pred CcHHHHHHHHHHHHHhhcCeeEEEEEEeeccccc-cccccc-------cc-----ccccccccccceeeeecCCc-----
Confidence 6999999999999999999999999999999988 444541 11 35677888999999999884
Q ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh
Q 017153 250 NEEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN 307 (376)
Q Consensus 250 ~~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~ 307 (376)
.|+ +.+++|++++++.+.++|||+..+.+.+++++++++++.||++++|++
T Consensus 63 ----aka---v~~viP~L~gki~g~a~RVPt~~vS~vDLt~~l~k~~t~eein~~l~~ 113 (162)
T d1obfo2 63 ----AAA---VGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKA 113 (162)
T ss_dssp ----HHH---HHHHCGGGTTSEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred ----hhh---HhHhChhhCCCCCceEEeccccCcceeeEEEEecCCCCHHHHHHHHHH
Confidence 233 588899999999999999999999999999999999999999999986
|
| >d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.57 E-value=4.2e-15 Score=127.76 Aligned_cols=112 Identities=11% Similarity=0.142 Sum_probs=99.4
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+++|+++.++.|+++|||+...++|+|++++. +..+|. .+ .+.+++|..+.|+||+.++.
T Consensus 1 CTTN~laP~~kvl~~~fgI~~g~mtTvHa~T~~-Q~l~D~-------~~-----~d~rr~Raa~~niIPt~Tga------ 61 (163)
T d1rm4a2 1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QRLLDA-------SH-----RDLRRARAACLNIVPTSTGA------ 61 (163)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTT-SCSSSC-------CC-----SSTTTTSCTTTCCEEECCCH------
T ss_pred ChhHhHHHHHHHHHHhCCeeEEEEEEeccccCC-cCcccC-------CC-----CcccccchhhcccCcCcccH------
Confidence 999999999999999999999999999999998 444552 11 26688899999999999884
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN 307 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~ 307 (376)
.|+ +.+++|.++.++.+.++|||+..|.+.+++++++++++.+||+++|++
T Consensus 62 ---~ka---i~~vlP~L~gki~g~a~RVPt~nvS~vDl~~~l~k~~t~eein~~~~~ 112 (163)
T d1rm4a2 62 ---AKA---VALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 112 (163)
T ss_dssp ---HHH---HHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred ---HHH---HHHhChhhcCCcceEEEecCCCCceeEEEEEeccCCCCHHHHHHHHHH
Confidence 233 588999999999999999999999999999999999999999999986
|
| >d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: GAPDH-like domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=99.54 E-value=1.1e-14 Score=125.00 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=99.3
Q ss_pred chHHHHHHHHhHHHHhCCCcEEEEEEEccccccChHhHHHHHHHhhhhhcCCCCCcccccccccccccccCCCCcCCCch
Q 017153 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (376)
Q Consensus 171 C~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSGaGr~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiph~~~~~e~g~~ 250 (376)
|+++|+++.++.|+++|||++..++|+|++++.. +.+|. . -.+.+++|..+.|+||+.+++
T Consensus 1 CTTNclaP~~kvl~~~fgI~~g~mTTvHa~T~~Q-~l~D~-------~-----~~d~Rr~Raa~~niIPtsTgA------ 61 (163)
T d3cmco2 1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQ-RILDL-------P-----HKDLRRARAAAESIIPTTTGA------ 61 (163)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTS-BSSSC-------C-----CSSTTTTSBTTTCCEEEECSH------
T ss_pred ChhHHHHHHHHHHHhhcCeeEEEEEeeccccCcc-cCCCC-------C-----CcchhccchHhhCCCCccccH------
Confidence 9999999999999999999999999999999984 44542 1 135678899999999999884
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEEEecccceeEeeEEEEeCCCCCHHHHHHHHHh
Q 017153 251 EEEMKMVKETRKIWNDKDVRVTATCIRVPVMRAHAESVNLQFEKPLDEDTARDILKN 307 (376)
Q Consensus 251 ~ee~k~~~e~~~il~~~~~~v~~t~~~VPv~rG~~~ti~v~l~~~~s~~ei~~~~~~ 307 (376)
.|+ +.+++|.+++++...++|||+..|.+.+++++++++++.|||+++|++
T Consensus 62 ---aka---v~~vlP~L~gkl~g~a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~k~ 112 (163)
T d3cmco2 62 ---AKA---VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKA 112 (163)
T ss_dssp ---HHH---HHHHCGGGTTTEEEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred ---HHH---HHHhhHHhCCCcceEEEecCCCcceeEEEEEEecCcCCHHHHHHHHHH
Confidence 233 588999999999999999999999999999999999999999999997
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=99.46 E-value=1.9e-14 Score=125.36 Aligned_cols=142 Identities=17% Similarity=0.153 Sum_probs=104.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC-CCCCeEEEEEecCCCCCc----------------eee-------ecCcceEEe-e
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGK----------------QLS-------FQDKAYTVE-E 93 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~-~~p~~~l~~v~s~~~~g~----------------~~~-------~~~~~~~v~-~ 93 (376)
+|||||+|+ |++|+.++|++.++ ..+.++++++........ .+. ..++.+.+. .
T Consensus 1 tikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~ 79 (173)
T d1obfo1 1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN 79 (173)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred CeEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEec
Confidence 589999999 99999999988653 247899999986432110 010 123445553 3
Q ss_pred cCccC--C--CCCcEEEEcCCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcC
Q 017153 94 LTEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (376)
Q Consensus 94 ~~~~~--~--~~~DvVf~a~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~P 169 (376)
-+|.+ | .++|+|++|+|.+.+.+.+..++++|++-|-+|++.- ++..+..|.++|++.++. +.++|||+
T Consensus 80 ~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~-~~~d~tiV~GVN~~~~~~------~~~IISnA 152 (173)
T d1obfo1 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG-ADVDATVVYGVNHGTLKS------TDTVISNA 152 (173)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC-TTSSEECCTTTSGGGCCT------TCCEEECC
T ss_pred CCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCC-CCCcceEEEecchhhcCC------CCCEEECC
Confidence 34443 5 3799999999999999999999999998666888752 223589999999999984 57899998
Q ss_pred CchHHHHHHHHhHHHHhCCCcEEEEEEEccccc
Q 017153 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASG 202 (376)
Q Consensus 170 gC~~ta~~l~L~pL~~~~~i~~v~v~t~~gvSG 202 (376)
+ +.|+|+...+||.|+++.
T Consensus 153 s--------------~~fgI~~g~mtTih~~ts 171 (173)
T d1obfo1 153 D--------------NEWGFSNRMLDTTVALMS 171 (173)
T ss_dssp C--------------TTHHHHHHHHHHHHHHHH
T ss_pred c--------------cccCceeeEEEeeheeee
Confidence 6 777777777777777654
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.76 E-value=2e-08 Score=86.07 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=66.7
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhh
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISK 115 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~ 115 (376)
|+++||||+|+ |++|+.+++.|.++ |+++++++.+++..-... ..... ..+.+ ...++|+|+.|+|+....
T Consensus 1 M~kirvgiiG~-G~ig~~~~~~l~~~--~~~elvav~~~~~~~~~~----~~~~~-~~~~~~~~~~~D~Vvi~tp~~~h~ 72 (170)
T d1f06a1 1 MTNIRVAIVGY-GNLGRSVEKLIAKQ--PDMDLVGIFSRRATLDTK----TPVFD-VADVDKHADDVDVLFLCMGSATDI 72 (170)
T ss_dssp CCCEEEEEECC-SHHHHHHHHHHTTC--SSEEEEEEEESSSCCSSS----SCEEE-GGGGGGTTTTCSEEEECSCTTTHH
T ss_pred CCcceEEEECC-hHHHHHHHHHHHhC--CCcEEEEEEecccccccc----ccccc-chhhhhhccccceEEEeCCCcccH
Confidence 34699999997 99999999999987 999999988765321110 11111 11222 246899999999999999
Q ss_pred hhHHHHHhCCCeEEEcC
Q 017153 116 KFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS 132 (376)
+++.+++++|+.||+..
T Consensus 73 ~~a~~aL~aG~~vv~~~ 89 (170)
T d1f06a1 73 PEQAPKFAQFACTVDTY 89 (170)
T ss_dssp HHHHHHHTTTSEEECCC
T ss_pred HHHHHHHHCCCcEEEec
Confidence 99999999999999643
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=5e-07 Score=76.81 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=82.4
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC---CCceeee----cCcceEEeecCccCCCCCcEEEEcCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF----QDKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~---~g~~~~~----~~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
.+|||+|+||+|..|+.+++++.+. +++++++...+.. .|+.+.. ...++.+.....+.+..+|++++.+.
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~--~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~ 80 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALAL--EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR 80 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHS--TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc
Confidence 4799999999999999999999887 8999987654332 2332211 11123333211223478999999999
Q ss_pred CchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCchH
Q 017153 111 GSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~~ 173 (376)
.+.+.++++.+.+.|+.+|--|.-| +.++++.++....+..++-.||=.-
T Consensus 81 p~~~~~~~~~a~~~~~~~ViGTTG~-------------~~~~~~~i~~~a~~ipi~~apN~Sl 130 (162)
T d1diha1 81 PEGTLNHLAFCRQHGKGMVIGTTGF-------------DEAGKQAIRDAAADIAIVFAANFSM 130 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCC-------------CHHHHHHHHHHTTTSCEEECSCCCH
T ss_pred HHHHHHHHHHHHhccceeEEecCCC-------------cHHHHHHHHHHcCCCCEEEEccccH
Confidence 9999999999999999988766555 3444443322222455787888653
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=1.3e-06 Score=73.55 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~ 115 (376)
|+||||+|+ |.+|+. .++.|..+ |.++++++.+++..- +.+.... ...+.. +.++ .+++|+|+.|+|+....
T Consensus 1 Kiri~iIG~-G~~g~~~~~~~l~~~--~~~~i~~v~d~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~D~V~I~tp~~~h~ 75 (164)
T d1tlta1 1 KLRIGVVGL-GGIAQKAWLPVLAAA--SDWTLQGAWSPTRAKALPICESW-RIPYAD-SLSSLAASCDAVFVHSSTASHF 75 (164)
T ss_dssp CEEEEEECC-STHHHHTHHHHHHSC--SSEEEEEEECSSCTTHHHHHHHH-TCCBCS-SHHHHHTTCSEEEECSCTTHHH
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHhC--CCcEEEEEEechhHhhhhhhhcc-cccccc-cchhhhhhcccccccccchhcc
Confidence 589999997 999986 67888877 899999998765322 1111100 111111 1122 36799999999999999
Q ss_pred hhHHHHHhCCCeEE
Q 017153 116 KFGPIAVEKGSIVV 129 (376)
Q Consensus 116 ~~~~~~~~~G~~VI 129 (376)
+++.+++++|..|+
T Consensus 76 ~~~~~al~~gk~V~ 89 (164)
T d1tlta1 76 DVVSTLLNAGVHVC 89 (164)
T ss_dssp HHHHHHHHTTCEEE
T ss_pred ccccccccccceee
Confidence 99999999999886
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=98.03 E-value=1.9e-05 Score=64.15 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=70.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
|||+|+|++|..|+.+.+++.++ ..+++...+++ ..+.+.++|+|++-+..+...++.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~---~~~l~~~id~~------------------~~~~~~~~DVvIDFS~p~~~~~~l~ 59 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK---GHELVLKVDVN------------------GVEELDSPDVVIDFSSPEALPKTVD 59 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT---TCEEEEEEETT------------------EEEECSCCSEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcC---CCeEEEEECCC------------------cHHHhccCCEEEEecCHHHHHHHHH
Confidence 68999999999999999988775 45665433211 0123467899999999999999999
Q ss_pred HHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCch
Q 017153 120 IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~ 172 (376)
.+.+.|+.+|--+.-| +.++++.++.-..+..++-.||+.
T Consensus 60 ~~~~~~~p~ViGTTG~-------------~~~~~~~i~~~ak~~pv~~a~N~s 99 (128)
T d1vm6a3 60 LCKKYRAGLVLGTTAL-------------KEEHLQMLRELSKEVPVVQAYSRT 99 (128)
T ss_dssp HHHHHTCEEEECCCSC-------------CHHHHHHHHHHTTTSEEEECSCTH
T ss_pred HHHhcCCCEEEEcCCC-------------CHHHHHHHHHHHhhCCEEeeeccC
Confidence 9999999998766544 444444332112245677788875
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=9.8e-06 Score=70.21 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=54.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~~~ 111 (376)
+.||.|.||||++|+.+++.|++++ .++.++......-+. .....+.+...| ++ .+.++|+||+|++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g---~~V~~~~R~~~~~~~--~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRLPS--EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---CEEEEEESCGGGSCS--SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEcChhhccc--ccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 4789999999999999999888864 477777532111111 111223333222 22 24789999999875
Q ss_pred ch-----------hhhhHHHHHhCCCe-EEEcCCC
Q 017153 112 SI-----------SKKFGPIAVEKGSI-VVDNSSA 134 (376)
Q Consensus 112 ~~-----------s~~~~~~~~~~G~~-VIDlS~~ 134 (376)
.. +....+.+.++|++ +|-+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~ 112 (205)
T d1hdoa_ 78 RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (205)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeee
Confidence 32 22334445566765 6656654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.97 E-value=4.9e-06 Score=69.86 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=55.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-eeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+|+|+ |.+|..+.+.|.+.+| ++... +++.... .....+ .+.....+.+.+.++|+||+|+|.....+..
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~---~V~~~-d~~~~~~~~a~~~~-~~~~~~~~~~~~~~~DiIilavp~~~~~~vl 74 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGH---YLIGV-SRQQSTCEKAVERQ-LVDEAGQDLSLLQTAKIIFLCTPIQLILPTL 74 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEE-CSCHHHHHHHHHTT-SCSEEESCGGGGTTCSEEEECSCHHHHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCC---EEEEE-ECCchHHHHHHHhh-ccceeeeecccccccccccccCcHhhhhhhh
Confidence 78999998 9999999999988644 66543 4432110 000010 0111111234568999999999988777777
Q ss_pred HHHHh---CCCeEEEcCC
Q 017153 119 PIAVE---KGSIVVDNSS 133 (376)
Q Consensus 119 ~~~~~---~G~~VIDlS~ 133 (376)
+++.+ .+..|+|.++
T Consensus 75 ~~l~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 75 EKLIPHLSPTAIVTDVAS 92 (165)
T ss_dssp HHHGGGSCTTCEEEECCS
T ss_pred hhhhhhcccccceeeccc
Confidence 76643 4566666654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=5.5e-06 Score=70.91 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-C--CCCcEEEEcCCC
Q 017153 37 ESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGG 111 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~ 111 (376)
|+++||||||+ |++|+. .++.+.+.+ ..++++++.+++.. .+.+........+.. +.++ + .++|+|+.|+|+
T Consensus 1 MkkirigiIG~-G~~g~~~h~~~l~~~~-~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~-~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 1 LRKIRLGIVGC-GIAARELHLPALKNLS-HLFEITAVTSRTRSHAEEFAKMVGNPAVFD-SYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp CCCEEEEEECC-SHHHHHTHHHHHHTTT-TTEEEEEEECSSHHHHHHHHHHHSSCEEES-CHHHHHHSSCCSEEEECCCG
T ss_pred CCCcEEEEEcC-CHHHHHHHHHHHHhCC-CCeEEEEEEeccHhhhhhhhccccccceee-eeeccccccccceeeccccc
Confidence 34799999997 999987 478887651 35899999876421 111111101112221 2222 2 478999999999
Q ss_pred chhhhhHHHHHhCCCeEE
Q 017153 112 SISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VI 129 (376)
....+++..++++|..|+
T Consensus 78 ~~h~~~~~~al~~gk~V~ 95 (181)
T d1zh8a1 78 ELNLPFIEKALRKGVHVI 95 (181)
T ss_dssp GGHHHHHHHHHHTTCEEE
T ss_pred cccccccccccccchhhh
Confidence 999999999999998876
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.86 E-value=2.5e-05 Score=64.02 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=61.5
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHHH
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~~ 120 (376)
||+|+|++|..|+++++.+.+. +++++++..++.. .+ ......++|+|++.+......++.+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~--~~~~l~~~~d~~~---~~------------~~~~~~~~DvvIDFS~p~~~~~~~~~ 63 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA--DDLTLSAELDAGD---PL------------SLLTDGNTEVVIDFTHPDVVMGNLEF 63 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS--TTSEEEEEECTTC---CT------------HHHHTTTCSEEEECCCTTTHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCC---ch------------hhhccccCCEEEEcccHHHHHHHHHH
Confidence 7999999999999999998887 8899987654321 10 00112468999999999999999999
Q ss_pred HHhCCCeEEEcCCCC
Q 017153 121 AVEKGSIVVDNSSAF 135 (376)
Q Consensus 121 ~~~~G~~VIDlS~~~ 135 (376)
+.+.|+.+|--+.-|
T Consensus 64 ~~~~~~~~ViGTTG~ 78 (135)
T d1yl7a1 64 LIDNGIHAVVGTTGF 78 (135)
T ss_dssp HHHTTCEEEECCCCC
T ss_pred HHhcCCCEEEecccc
Confidence 999999988666544
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.80 E-value=8.8e-06 Score=68.54 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=57.9
Q ss_pred CCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccC-C-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~-~-~~~DvVf~a~~~~~s 114 (376)
+|||||+|+ |..|+. .++.|... ++++++ +.+++. ..+.+........+. .+.++ + .++|+|+.|+|+...
T Consensus 1 tirvgiiG~-G~~~~~~~~~~l~~~--~~~~~~-~~d~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~iD~V~I~tp~~~H 75 (167)
T d1xeaa1 1 SLKIAMIGL-GDIAQKAYLPVLAQW--PDIELV-LCTRNPKVLGTLATRYRVSATC-TDYRDVLQYGVDAVMIHAATDVH 75 (167)
T ss_dssp CEEEEEECC-CHHHHHTHHHHHTTS--TTEEEE-EECSCHHHHHHHHHHTTCCCCC-SSTTGGGGGCCSEEEECSCGGGH
T ss_pred CeEEEEEcC-CHHHHHHHHHHHHhC--CCcEEE-EEECCHHHHHHHHHhccccccc-ccHHHhcccccceeccccccccc
Confidence 489999998 999976 67888776 889987 444331 111111110001111 12222 2 478999999999999
Q ss_pred hhhHHHHHhCCCeEE
Q 017153 115 KKFGPIAVEKGSIVV 129 (376)
Q Consensus 115 ~~~~~~~~~~G~~VI 129 (376)
.+++.+++++|+.|+
T Consensus 76 ~~~~~~al~~gk~V~ 90 (167)
T d1xeaa1 76 STLAAFFLHLGIPTF 90 (167)
T ss_dssp HHHHHHHHHTTCCEE
T ss_pred ccccccccccccccc
Confidence 999999999998876
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=1.1e-05 Score=69.07 Aligned_cols=87 Identities=16% Similarity=0.245 Sum_probs=62.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cC-cceEEeecCccCC---CCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QD-KAYTVEELTEDSF---DGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~-~~~~v~~~~~~~~---~~~DvVf~a~~~ 111 (376)
++||||+|+ |.+|+..++.|... +.++++++.+++.. .+.+.. +. ....+.. +.+++ .++|+|+.|+|+
T Consensus 1 kiki~iIG~-G~~g~~~~~~l~~~--~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 1 QIRIGVMGC-ADIARKVSRAIHLA--PNATISGVASRSLEKAKAFATANNYPESTKIHG-SYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp CEEEEEESC-CTTHHHHHHHHHHC--TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES-SHHHHHHCTTCCEEEECCCG
T ss_pred CeEEEEEcC-CHHHHHHHHHHHhC--CCCEEEEEEeCCccccccchhccccccceeecC-cHHHhhhccccceeeecccc
Confidence 489999997 99999999999877 89999998875421 111111 10 1122221 22222 478999999999
Q ss_pred chhhhhHHHHHhCCCeEE
Q 017153 112 SISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VI 129 (376)
....+++..++++|..|+
T Consensus 77 ~~h~~~~~~~l~~g~~v~ 94 (184)
T d1ydwa1 77 SLHVEWAIKAAEKGKHIL 94 (184)
T ss_dssp GGHHHHHHHHHTTTCEEE
T ss_pred hhhcchhhhhhhccceee
Confidence 999999999999999886
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.72 E-value=3.2e-05 Score=68.28 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=65.5
Q ss_pred eeeccCCCCCCCEEEEECcccHHHHH-HHHHHhcCCCCCeEEEEEecCCCC-Cceeee--cCcceEEeec-CccC-C--C
Q 017153 29 TRVRMSYQESAPSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDKAYTVEEL-TEDS-F--D 100 (376)
Q Consensus 29 ~~~~~~~~~~~irVaIvGaTG~vG~e-Llr~L~~~~~p~~~l~~v~s~~~~-g~~~~~--~~~~~~v~~~-~~~~-~--~ 100 (376)
...+|+.. +++||||||+ |.+|+. +++.+..+ +.++++++++++.. .+.+.. +.....+... +.++ + .
T Consensus 24 ~~~~~~~~-~~iriaiIG~-G~~~~~~~~~~~~~~--~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~ 99 (221)
T d1h6da1 24 AIRPMPED-RRFGYAIVGL-GKYALNQILPGFAGC--QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDP 99 (221)
T ss_dssp CSSCCCCC-CCEEEEEECC-SHHHHHTHHHHTTTC--SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCT
T ss_pred ccCCCCCC-CCEEEEEEcC-cHHHHHHHHHHHHhC--CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccc
Confidence 33455543 4799999998 999974 67777776 89999999876421 111110 1111112111 2222 2 4
Q ss_pred CCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 101 GVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 101 ~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
++|+|+.|+|+....+++.+++++|..|+
T Consensus 100 ~iD~V~I~tp~~~H~~~~~~al~~gk~v~ 128 (221)
T d1h6da1 100 KIDAVYIILPNSLHAEFAIRAFKAGKHVM 128 (221)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred cceeeeeccchhhhhhHHHHhhhcchhhh
Confidence 78999999999999999999999999887
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=5.6e-05 Score=66.57 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=44.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCCCceeeecCcceEEeecC---cc----CCCCCcEEEEcC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAGKQLSFQDKAYTVEELT---ED----SFDGVDIALFSA 109 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~----~~~~~DvVf~a~ 109 (376)
++++|.|.||||++|+.|++.|.++ +.+ ++.++.. +....... ....+.....| .+ .+.++|+||.|+
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~--g~~~~v~~~~R-~~~~~~~~-~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~ 88 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGR-RKLTFDEE-AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCL 88 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEES-SCCCCCSG-GGGGCEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhC--CCCCEEEEEec-Chhhhccc-ccceeeeeeecccccccccccccccccccccc
Confidence 3579999999999999999988876 444 6766653 22111110 11222222112 22 246899999998
Q ss_pred CCc
Q 017153 110 GGS 112 (376)
Q Consensus 110 ~~~ 112 (376)
+..
T Consensus 89 ~~~ 91 (232)
T d2bkaa1 89 GTT 91 (232)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.64 E-value=1.5e-05 Score=67.50 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=57.7
Q ss_pred CCCCCEEEEECcccHHHHHHHHHHhcCC-CCCeEEEEEecCCCCCceeeecCcceEEeecCccC-C--CCCcEEEEcCCC
Q 017153 36 QESAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIALFSAGG 111 (376)
Q Consensus 36 ~~~~irVaIvGaTG~vG~eLlr~L~~~~-~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~-~--~~~DvVf~a~~~ 111 (376)
.+.++||||||+ |++|+..++.|.... ...+.++...+++...... .. ...+.++ + .++|+|+.|+|+
T Consensus 4 ~~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~e~l~~~~iD~V~I~tp~ 75 (172)
T d1lc0a1 4 NSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLD-----EV--RQISLEDALRSQEIDVAYICSES 75 (172)
T ss_dssp CCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEET-----TE--EBCCHHHHHHCSSEEEEEECSCG
T ss_pred CCCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhh-----cc--CcCCHHHHHhCCCcchhhhcccc
Confidence 345799999998 999999999887651 1234444444433222110 11 1112222 2 478999999999
Q ss_pred chhhhhHHHHHhCCCeEE
Q 017153 112 SISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VI 129 (376)
....+++.+++++|..|+
T Consensus 76 ~~H~~~~~~al~~gk~V~ 93 (172)
T d1lc0a1 76 SSHEDYIRQFLQAGKHVL 93 (172)
T ss_dssp GGHHHHHHHHHHTTCEEE
T ss_pred cccccccccccccchhhh
Confidence 999999999999998876
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00013 Score=60.13 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=58.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecC---cc--eEEeecCccCCCCCcEEEEcCCCchh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD---KA--YTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~---~~--~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
|||+|+|+ |.+|..+...|.+.+| ++..+.........+.... .. ..+...+.+....+|++|+|++....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~ 76 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGH---EVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQV 76 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC---ceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccch
Confidence 79999999 9999999999988654 6666653332222222111 11 11222223345689999999999887
Q ss_pred hhhHHHHHh---CCCeEEEcCCCC
Q 017153 115 KKFGPIAVE---KGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~---~G~~VIDlS~~~ 135 (376)
.+..+.+.. .+..|+.+..-+
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGM 100 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSS
T ss_pred HHHHHhhccccCcccEEeeccCcc
Confidence 777776653 466677765543
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.55 E-value=2.8e-05 Score=64.40 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=56.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhHH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
|||||+|. |..|..+.+.|.+++| ++.+....+........ ....+.....+...++|+||+|++...+.+.+.
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~---~v~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~ 74 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGV---EVVTSLEGRSPSTIERA--RTVGVTETSEEDVYSCPVVISAVTPGVALGAAR 74 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTC---EEEECCTTCCHHHHHHH--HHHTCEECCHHHHHTSSEEEECSCGGGHHHHHH
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCC---eEEEEcCchhHHHHHhh--hcccccccHHHHHhhcCeEEEEecCchHHHHHH
Confidence 78999998 9999999999998744 55543322211111100 111122211223468999999999988877766
Q ss_pred HHHh-CCCeEEEcCCCC
Q 017153 120 IAVE-KGSIVVDNSSAF 135 (376)
Q Consensus 120 ~~~~-~G~~VIDlS~~~ 135 (376)
.... .+..+||+|...
T Consensus 75 ~~~~~~~~~~id~st~~ 91 (152)
T d1i36a2 75 RAGRHVRGIYVDINNIS 91 (152)
T ss_dssp HHHTTCCSEEEECSCCC
T ss_pred hhcccCCceeeccCcCC
Confidence 5543 466788888753
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.52 E-value=0.00015 Score=58.30 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=67.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeeecCcceEEeecCc-cC--CCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQDKAYTVEELTE-DS--FDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~~~~~~~v~~~~~-~~--~~~~DvVf~a~~~~~ 113 (376)
+.||+|+|| |..|+.|++.+..+ +.++++++.+.+ ..|+.+. .+++...+. +. -...++++.|.|...
T Consensus 3 ~~~v~I~Ga-G~~G~~l~~~l~~~--~~~~iv~fiDdd~~k~G~~I~----Gi~V~~~~~l~~~~~~~i~iai~~i~~~~ 75 (126)
T d2dt5a2 3 KWGLCIVGM-GRLGSALADYPGFG--ESFELRGFFDVDPEKVGRPVR----GGVIEHVDLLPQRVPGRIEIALLTVPREA 75 (126)
T ss_dssp CEEEEEECC-SHHHHHHHHCSCCC--SSEEEEEEEESCTTTTTCEET----TEEEEEGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CceEEEEcC-CHHHHHHHHhHhhc--CCcEEEEEEeCchHhcCCEEC----CEEEecHHHHHHHHhhcccEEEEeCCHHH
Confidence 579999999 99999999987665 789999887543 4455442 355554331 11 146899999999999
Q ss_pred hhhhHHHHHhCCCeEEEcCCCCCC
Q 017153 114 SKKFGPIAVEKGSIVVDNSSAFRM 137 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS~~~R~ 137 (376)
..+....+.+.|++-|-.=++.++
T Consensus 76 ~~~I~d~l~~~gIk~I~~f~~~~l 99 (126)
T d2dt5a2 76 AQKAADLLVAAGIKGILNFAPVVL 99 (126)
T ss_dssp HHHHHHHHHHHTCCEEEECSSSCC
T ss_pred HHHHHHHHHHcCCCEEeecCceee
Confidence 999999999999985543334443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.41 E-value=5.9e-05 Score=65.11 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=40.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCCCceeeecCcceEEeecC----ccC-CCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLSFQDKAYTVEELT----EDS-FDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~g~~~~~~~~~~~v~~~~----~~~-~~~~DvVf~a~~~~ 112 (376)
++||.|.||||++|+.|++.|.++ ++ .++..+ +++..... ..+.....+ .+. ...+|+||.|.+..
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~--~~~~~v~~~-~r~~~~~~-----~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~ 73 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSE--PTLAKVIAP-ARKALAEH-----PRLDNPVGPLAELLPQLDGSIDTAFCCLGTT 73 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHC--TTCCEEECC-BSSCCCCC-----TTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC--CCeEEEEEE-eCCchhhc-----ccccccccchhhhhhccccchheeeeeeeee
Confidence 379999999999999999998887 44 355433 33321110 111111111 112 24689999998765
Q ss_pred h
Q 017153 113 I 113 (376)
Q Consensus 113 ~ 113 (376)
.
T Consensus 74 ~ 74 (212)
T d2a35a1 74 I 74 (212)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.41 E-value=9.4e-05 Score=61.82 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=56.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--ecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
.||+|+|. |.+|..+++.|.+.+ +..++.++ +++....... .+..+......+.....++|+||+|+|.....+.
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g-~~~~I~~~-D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~v 78 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSG-FKGKIYGY-DINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI 78 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTT-CCSEEEEE-CSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcC-CCeEEEEE-ECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhh
Confidence 47999998 999999999998764 34566544 3322111000 0111111222222223478999999999877777
Q ss_pred HHHHH---hCCCeEEEcCCC
Q 017153 118 GPIAV---EKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~---~~G~~VIDlS~~ 134 (376)
...+. ..+..|+|.++.
T Consensus 79 l~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 79 AKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhccccccccccccccc
Confidence 66553 467788887764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.17 E-value=0.00094 Score=54.54 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhh
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~ 117 (376)
+..||+|||+.|.+|+.+.+.|.+.+| ++... +++.. ........++|++++|+|.....+.
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~-d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~v 69 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGY---PISIL-DREDW--------------AVAESILANADVVIVSVPINLTLET 69 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTC---CEEEE-CTTCG--------------GGHHHHHTTCSEEEECSCGGGHHHH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCC---CcEec-ccccc--------------cccchhhhhccccccccchhhheee
Confidence 457999999779999999999988644 44433 22110 0001123688999999999888777
Q ss_pred HHHHHh---CCCeEEEcCCC
Q 017153 118 GPIAVE---KGSIVVDNSSA 134 (376)
Q Consensus 118 ~~~~~~---~G~~VIDlS~~ 134 (376)
...+.. .|..+||.++-
T Consensus 70 ~~~~~~~~~~~~iiiD~~Sv 89 (152)
T d2pv7a2 70 IERLKPYLTENMLLADLTSV 89 (152)
T ss_dssp HHHHGGGCCTTSEEEECCSC
T ss_pred eecccccccCCceEEEeccc
Confidence 776643 57888888764
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.14 E-value=0.0001 Score=60.85 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=52.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
|||+++|+ |..|..+++.|.+++ ..++. +.+++..- +.+... ..+.... +.++..++|+||+|++.....+..
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~--~~~i~-v~~r~~~~~~~l~~~-~~~~~~~-~~~~v~~~Div~lavkP~~~~~v~ 74 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQG--GYRIY-IANRGAEKRERLEKE-LGVETSA-TLPELHSDDVLILAVKPQDMEAAC 74 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHC--SCEEE-EECSSHHHHHHHHHH-TCCEEES-SCCCCCTTSEEEECSCHHHHHHHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCC--CCcEE-EEeCChhHHHHhhhh-ccccccc-ccccccccceEEEecCHHHHHHhH
Confidence 78999998 999999999776652 24554 34433210 111111 1233332 244567899999999865544444
Q ss_pred HHHHhCCCeEEEcCCC
Q 017153 119 PIAVEKGSIVVDNSSA 134 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~ 134 (376)
+.+...+..||++.+.
T Consensus 75 ~~l~~~~~~viS~~ag 90 (152)
T d1yqga2 75 KNIRTNGALVLSVAAG 90 (152)
T ss_dssp TTCCCTTCEEEECCTT
T ss_pred HHHhhcccEEeecccC
Confidence 4443445566655543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00053 Score=51.72 Aligned_cols=86 Identities=15% Similarity=0.254 Sum_probs=56.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
.||+|+|+ |.+|+.+++.|.+++ .++.+.-.+.. .............+...+...+.++|.|+...+-....+..
T Consensus 6 K~v~ViGl-G~sG~s~a~~L~~~g---~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~~~~~~ 81 (93)
T d2jfga1 6 KNVVIIGL-GLTGLSCVDFFLARG---VTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSL 81 (93)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT---CCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSCTTSHHH
T ss_pred CEEEEEeE-CHHHHHHHHHHHHCC---CEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCCCCCHHH
Confidence 68999999 999999999999874 34444433222 11111011111222233333457889999988887778888
Q ss_pred HHHHhCCCeEE
Q 017153 119 PIAVEKGSIVV 129 (376)
Q Consensus 119 ~~~~~~G~~VI 129 (376)
.++.++|+.||
T Consensus 82 ~~a~~~gi~ii 92 (93)
T d2jfga1 82 SAAADAGIEIV 92 (93)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHcCCCeE
Confidence 88999999987
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.01 E-value=0.00093 Score=61.83 Aligned_cols=33 Identities=9% Similarity=0.180 Sum_probs=27.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.|||.|.|+||++|+.|++.|.+++| ++..+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~---~V~~~d 46 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGH---YVIASD 46 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEe
Confidence 358999999999999999999988744 666553
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=4.6e-05 Score=62.79 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=51.3
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhhhHH
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFGP 119 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~~ 119 (376)
|++||+ |..|+.+++.|.+. .++..+.+|+.. .+.+...+.. ...+. +....+|+||+|+|.....+..+
T Consensus 2 IgfIG~-G~mg~~l~~~L~~~----~~~~~v~~R~~~~~~~l~~~~~~---~~~~~~~~~~~~DiVil~v~d~~i~~v~~ 73 (153)
T d2i76a2 2 LNFVGT-GTLTRFFLECLKDR----YEIGYILSRSIDRARNLAEVYGG---KAATLEKHPELNGVVFVIVPDRYIKTVAN 73 (153)
T ss_dssp CEEESC-CHHHHHHHHTTC--------CCCEECSSHHHHHHHHHHTCC---CCCSSCCCCC---CEEECSCTTTHHHHHT
T ss_pred EEEEeC-cHHHHHHHHHHHhC----CCEEEEEeCChhhhcchhhcccc---cccchhhhhccCcEEEEeccchhhhHHHh
Confidence 689998 99999999988653 233334554311 1111111111 11122 33578999999999988887777
Q ss_pred HHHhCCCeEEEcCCCC
Q 017153 120 IAVEKGSIVVDNSSAF 135 (376)
Q Consensus 120 ~~~~~G~~VIDlS~~~ 135 (376)
.+...|..|||.|+..
T Consensus 74 ~l~~~~~ivi~~s~~~ 89 (153)
T d2i76a2 74 HLNLGDAVLVHCSGFL 89 (153)
T ss_dssp TTCCSSCCEEECCSSS
T ss_pred hhcccceeeeecccch
Confidence 7655688899998865
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.95 E-value=0.0014 Score=51.03 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=60.0
Q ss_pred CceeeeccCCCCCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCccCCCCCc
Q 017153 26 PMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDSFDGVD 103 (376)
Q Consensus 26 ~~~~~~~~~~~~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~~~~~~~D 103 (376)
|+|-.++ ..||.|+|+ |.+|..-++.|.+. ..++.++....+...........+.+. ..+++++.+++
T Consensus 5 Pi~l~l~------~k~vlVvG~-G~va~~ka~~ll~~---ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~ 74 (113)
T d1pjqa1 5 PIFCQLR------DRDCLIVGG-GDVAERKARLLLEA---GARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCW 74 (113)
T ss_dssp EEEECCB------TCEEEEECC-SHHHHHHHHHHHHT---TBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCS
T ss_pred ceEEEeC------CCEEEEECC-CHHHHHHHHHHHHC---CCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCc
Confidence 5565444 479999998 99999999999885 456665543222111000011123332 34566788999
Q ss_pred EEEEcCCCc-hhhhhHHHHHhCCCeE
Q 017153 104 IALFSAGGS-ISKKFGPIAVEKGSIV 128 (376)
Q Consensus 104 vVf~a~~~~-~s~~~~~~~~~~G~~V 128 (376)
+|+.|++.. ...+....+.+.|+.|
T Consensus 75 lv~~at~d~~~n~~i~~~a~~~~ilV 100 (113)
T d1pjqa1 75 LAIAATDDDTVNQRVSDAAESRRIFC 100 (113)
T ss_dssp EEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred EEeecCCCHHHHHHHHHHHHHcCCEE
Confidence 999998775 4566667777788775
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.95 E-value=0.00073 Score=55.74 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=61.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe--ecCc-----cCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTE-----DSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~--~~~~-----~~~~~~DvVf~a~~~ 111 (376)
..||.|+|| |++|+.+++.|.+++| ++.++.......+.+.......... ..+. +.+...|+++.++|.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~---~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 77 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGI---KVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPY 77 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTC---EEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCG
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC---EEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccc
Confidence 479999999 9999999999998743 6665542222222222211112221 1111 113578999999999
Q ss_pred chhhhhHHHHHhCCCeEEEcCCC
Q 017153 112 SISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
.........+.+.++.++|++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~ 100 (182)
T d1e5qa1 78 TFHATVIKSAIRQKKHVVTTSYV 100 (182)
T ss_dssp GGHHHHHHHHHHHTCEEECSSCC
T ss_pred hhhhHHHHHHHhhccceeecccC
Confidence 88888777888889999998754
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.90 E-value=0.00014 Score=60.63 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=51.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-CceeeecCcceEEeecCccC-CCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~~~~~~v~~~~~~~-~~~~DvVf~a~~~~~s~~~ 117 (376)
|||||+|. |..|..+.+.|.+++| ++.+ .+++.. -+.+... ...+.. ++.+ ..++|++|+|+|.....+.
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G~---~V~~-~d~~~~~~~~~~~~--~~~~~~-~~~e~~~~~d~ii~~v~~~~~v~~ 72 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAGY---SLVV-SDRNPEAIADVIAA--GAETAS-TAKAIAEQCDVIITMLPNSPHVKE 72 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTC---EEEE-ECSCHHHHHHHHHT--TCEECS-SHHHHHHHCSEEEECCSSHHHHHH
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCCC---eEEE-EeCCcchhHHHHHh--hhhhcc-cHHHHHhCCCeEEEEcCCHHHHHH
Confidence 68999998 9999999999988644 5543 333211 0111111 112211 2222 4689999999987655433
Q ss_pred HH-------HHHhCCCeEEEcCCC
Q 017153 118 GP-------IAVEKGSIVVDNSSA 134 (376)
Q Consensus 118 ~~-------~~~~~G~~VIDlS~~ 134 (376)
+- .....|..+||+|..
T Consensus 73 v~~~~~~~~~~~~~g~iiid~sT~ 96 (161)
T d1vpda2 73 VALGENGIIEGAKPGTVLIDMSSI 96 (161)
T ss_dssp HHHSTTCHHHHCCTTCEEEECSCC
T ss_pred HHhCCcchhhccCCCCEEEECCCC
Confidence 21 112357778887765
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=96.85 E-value=0.00076 Score=55.80 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=59.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceeee------------------------cCcceEEe-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSF------------------------QDKAYTVE- 92 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~~------------------------~~~~~~v~- 92 (376)
+.||+|+|+||-+|...++.+.++ | .+++++++..+...+.... ...++.+.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~--~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~ 79 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERN--LDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAA 79 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT--GGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcC--CCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhccccccc
Confidence 479999999999999999999887 6 5999998765543321110 01112222
Q ss_pred ecCc-c--CCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 93 ELTE-D--SFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 93 ~~~~-~--~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
..+. . ...++|+|+.|.......+..-.+++.|..|-
T Consensus 80 g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~ia 119 (150)
T d1r0ka2 80 GADALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVA 119 (150)
T ss_dssp SHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEE
T ss_pred CccchheecccccceeeeecCchhHHHHHHHHHhcCCEEE
Confidence 1110 0 12478999999888888777777788887654
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.80 E-value=0.00078 Score=55.38 Aligned_cols=70 Identities=20% Similarity=0.384 Sum_probs=42.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCCCC----Cce--eee----cCc--ceEEeec-CccCCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSA----GKQ--LSF----QDK--AYTVEEL-TEDSFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~~~----g~~--~~~----~~~--~~~v~~~-~~~~~~~~DvV 105 (376)
|||+|+||+|.+|..+..+|..+ +- -|++.+--.... |.. +.. ... .+.+... +.+++.++|+|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~--~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvV 78 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE--PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVV 78 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC--TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEE
Confidence 78999999999999999999887 43 367655422211 110 110 011 2222222 34556789998
Q ss_pred EEcCCC
Q 017153 106 LFSAGG 111 (376)
Q Consensus 106 f~a~~~ 111 (376)
+.+.|.
T Consensus 79 VitAG~ 84 (145)
T d1hyea1 79 IITSGV 84 (145)
T ss_dssp EECCSC
T ss_pred EEeccc
Confidence 888654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.68 E-value=0.00021 Score=59.15 Aligned_cols=88 Identities=11% Similarity=0.198 Sum_probs=51.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCchhhhh
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~s~~~ 117 (376)
|||||+|+ |..|..+++.|.+.+ .++. +..++. .-+.+... ....+.. +.+ ..+++|+||+|++.....+.
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~---~~i~-v~~r~~~~~~~l~~~-~g~~~~~-~~~~~~~~~dvIilavkp~~~~~v 73 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTP---HELI-ISGSSLERSKEIAEQ-LALPYAM-SHQDLIDQVDLVILGIKPQLFETV 73 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSS---CEEE-EECSSHHHHHHHHHH-HTCCBCS-SHHHHHHTCSEEEECSCGGGHHHH
T ss_pred CEEEEEec-cHHHHHHHHHHHhCC---CeEE-EEcChHHhHHhhccc-cceeeec-hhhhhhhccceeeeecchHhHHHH
Confidence 78999998 999999999988762 3554 333321 11111110 0111111 222 24689999999987665555
Q ss_pred HHHHHhCCCeEEEcCCCC
Q 017153 118 GPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 118 ~~~~~~~G~~VIDlS~~~ 135 (376)
.+.+ ..+..+|+..+..
T Consensus 74 l~~l-~~~~~iis~~agi 90 (152)
T d2ahra2 74 LKPL-HFKQPIISMAAGI 90 (152)
T ss_dssp HTTS-CCCSCEEECCTTC
T ss_pred hhhc-ccceeEecccccc
Confidence 4432 3466677766543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.67 E-value=0.0034 Score=50.31 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=63.6
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
..+|+|+||| |..|..+++.|.++ ...++..+.... +.+ ...++.. +..++ ..+|+|+.++|....
T Consensus 8 PksIAVVGaS~~~~~~g~~v~~~L~~~--~~g~v~pVnP~~---~~i----~G~~~y~-sl~dlp~~vDlvvi~vp~~~~ 77 (129)
T d2csua1 8 PKGIAVIGASNDPKKLGYEVFKNLKEY--KKGKVYPVNIKE---EEV----QGVKAYK-SVKDIPDEIDLAIIVVPKRFV 77 (129)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTC--CSSEEEEECSSC---SEE----TTEECBS-STTSCSSCCSEEEECSCHHHH
T ss_pred CCeEEEEccCCCCCCcHHHHHHHHHHc--CCCcEEEeccCc---ccc----CCeEeec-chhhcCCCCceEEEecChHHh
Confidence 4789999998 99999999998765 245777665322 121 1123322 22334 478999999999999
Q ss_pred hhhHHHHHhCCCe-EEEcCCCCC
Q 017153 115 KKFGPIAVEKGSI-VVDNSSAFR 136 (376)
Q Consensus 115 ~~~~~~~~~~G~~-VIDlS~~~R 136 (376)
.+..+++.+.|++ ++-+|+-|.
T Consensus 78 ~~~~~~~~~~g~~~~vi~s~Gf~ 100 (129)
T d2csua1 78 KDTLIQCGEKGVKGVVIITAGFG 100 (129)
T ss_dssp HHHHHHHHHHTCCEEEECCCSST
T ss_pred HHHHHHHHHcCCCEEEEeccccc
Confidence 9999999999988 566788774
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.66 E-value=0.00068 Score=59.90 Aligned_cols=87 Identities=20% Similarity=0.088 Sum_probs=57.2
Q ss_pred CCCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEeecCccCC---CCCcEEEEc
Q 017153 38 SAPSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEELTEDSF---DGVDIALFS 108 (376)
Q Consensus 38 ~~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~~~~~~~---~~~DvVf~a 108 (376)
+++||||||+. |++++.-+..+.+. .|.++++++++++..- +.... +........ +.+++ .++|+|+.|
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~-~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~iD~V~i~ 92 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQL-SSQFQIVALYNPTLKSSLQTIEQLQLKHATGFD-SLESFAQYKDIDMIVVS 92 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHT-TTTEEEEEEECSCHHHHHHHHHHTTCTTCEEES-CHHHHHHCTTCSEEEEC
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhc-CCCeEEEEEEcCCHHHHHHHHHhcccccceeec-chhhcccccccceeecc
Confidence 46999999983 46777777766542 1789999998764211 11111 111122221 22222 478999999
Q ss_pred CCCchhhhhHHHHHhCCC
Q 017153 109 AGGSISKKFGPIAVEKGS 126 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~ 126 (376)
+|+....+++.+++++|.
T Consensus 93 tp~~~h~~~~~~al~aG~ 110 (237)
T d2nvwa1 93 VKVPEHYEVVKNILEHSS 110 (237)
T ss_dssp SCHHHHHHHHHHHHHHSS
T ss_pred CCCcchhhHHHHHHHhcc
Confidence 999999999999999885
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.004 Score=56.74 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=53.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC---ccC-----CCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDS-----FDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~---~~~-----~~~~DvVf~a~~~ 111 (376)
|||.|.|||||+|+.|++.|.++ ...++.++...+....... ....+.+...| .+. ..++|+||.|...
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~--g~~~V~~ld~~~~~~~~~~-~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~ 77 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRFL-NHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI 77 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS--TTCEEEEEESCCGGGGGGT-TCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeCCCcchhhhc-cCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence 68999999999999999988877 3457776643221111111 11223333222 111 2479999998764
Q ss_pred ch------------------hhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~------------------s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.. +......+.+.+++.+-.|+..
T Consensus 78 ~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~ 119 (342)
T d2blla1 78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSE 119 (342)
T ss_dssp CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred ccccccccCCcccccccccccccccccccccccccccccccc
Confidence 22 1223334456678766666544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.65 E-value=0.00071 Score=56.46 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=48.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--------CCceeee-cCcceE----EeecC-ccCCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------AGKQLSF-QDKAYT----VEELT-EDSFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--------~g~~~~~-~~~~~~----v~~~~-~~~~~~~DvV 105 (376)
+||+|+|+ |.+|..+...|.+++| ++..+. ++. .+..... .+.... ....+ .+.+.++|++
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQ---SVLAWD-IDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI 76 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC---EEEEEC-SCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCC---EEEEEE-CCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEE
Confidence 79999999 9999999999998754 555443 321 1111111 000111 11112 2235789999
Q ss_pred EEcCCCchhhhhHHHHH
Q 017153 106 LFSAGGSISKKFGPIAV 122 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~ 122 (376)
|+|++........+++.
T Consensus 77 ii~v~~~~~~~~~~~i~ 93 (184)
T d1bg6a2 77 LIVVPAIHHASIAANIA 93 (184)
T ss_dssp EECSCGGGHHHHHHHHG
T ss_pred EEEEchhHHHHHHHHhh
Confidence 99999988777666554
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.0019 Score=54.15 Aligned_cols=93 Identities=23% Similarity=0.197 Sum_probs=56.5
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCC-CCeEEEEEecCCC-----CCceeeec--Cc-ceE---EeecCc-------c
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRS-----AGKQLSFQ--DK-AYT---VEELTE-------D 97 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~-p~~~l~~v~s~~~-----~g~~~~~~--~~-~~~---v~~~~~-------~ 97 (376)
+++++|+|+|. |.||+.++++|.++.. -.++++.++.++. .|-.+... .+ ... ....+. .
T Consensus 2 ~k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T d1ebfa1 2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK 80 (168)
T ss_dssp CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred CCEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhc
Confidence 35689999998 9999999998876521 2345555543221 11111000 00 000 000000 0
Q ss_pred CCCCCcEEEEcCCCchhhhhHHHHHhCCCeEEE
Q 017153 98 SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 98 ~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VID 130 (376)
.....|++++|++.....++..+++++|+.||-
T Consensus 81 ~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVT 113 (168)
T d1ebfa1 81 TSPKPVILVDNTSSAYIAGFYTKFVENGISIAT 113 (168)
T ss_dssp TCSSCEEEEECSCCHHHHTTHHHHHHTTCEEEC
T ss_pred cCCCceEEEEecCChHHHHHHHHHHHcCCeEEe
Confidence 113568999999998888888889999999994
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.49 E-value=0.00037 Score=59.81 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=56.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--------Cceeee-----cCcceEEeecCc-cCCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSF-----QDKAYTVEELTE-DSFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--------g~~~~~-----~~~~~~v~~~~~-~~~~~~DvV 105 (376)
.||+|+|+ |..|..+...|.+.+| ++... +++.. +....+ ...++.+.. +. +.+.++|++
T Consensus 8 ~KI~ViGa-G~wGtAlA~~La~~g~---~V~l~-~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~-~l~~a~~~ad~i 81 (189)
T d1n1ea2 8 NKAVVFGS-GAFGTALAMVLSKKCR---EVCVW-HMNEEEVRLVNEKRENVLFLKGVQLASNITFTS-DVEKAYNGAEII 81 (189)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTTEE---EEEEE-CSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEES-CHHHHHTTCSCE
T ss_pred ceEEEECC-CHHHHHHHHHHHHcCC---eEEEE-EecHHHHHHHhhcccccccccccccccccccch-hhhhccCCCCEE
Confidence 57999999 9999999999987533 44433 33211 000000 012333332 22 235789999
Q ss_pred EEcCCCchhhhhHHHH--------HhCCCeEEEcCCCC
Q 017153 106 LFSAGGSISKKFGPIA--------VEKGSIVVDNSSAF 135 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~--------~~~G~~VIDlS~~~ 135 (376)
|+|+|+...++..+++ ...+..+|.++--+
T Consensus 82 iiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi 119 (189)
T d1n1ea2 82 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 119 (189)
T ss_dssp EECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred EEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence 9999998777766543 35677888887765
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.48 E-value=0.0011 Score=54.40 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=43.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCce--eee---cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQ--LSF---QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~--~~~---~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
.+||+|+|+ |++|..+...|..++. .-|++.+--.. ..|.. +.. ......+..-|.+++.++|+|+.+.+.
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~-~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~~~adivvitag~ 82 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGI-AEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGA 82 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHhccccEEEEeccc
Confidence 589999997 9999999998887622 23666553111 11111 000 011122333356677899999998765
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.46 E-value=0.00064 Score=56.27 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=42.8
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC----CCCeEEEEEecCCCCCceeee----------cCcceEEeecCccCCCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD----FPYRSIKMLASKRSAGKQLSF----------QDKAYTVEELTEDSFDGVD 103 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~----~p~~~l~~v~s~~~~g~~~~~----------~~~~~~v~~~~~~~~~~~D 103 (376)
+++||+|+||+|.+|..++-.|.+.+ ....+++.+-..+..++.... .........-+.+.+.++|
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 81 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD 81 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence 36899999999999999998886531 123566655433322221110 0011222222234578889
Q ss_pred EEEEcCCC
Q 017153 104 IALFSAGG 111 (376)
Q Consensus 104 vVf~a~~~ 111 (376)
+|+.+.+.
T Consensus 82 vVVitag~ 89 (154)
T d5mdha1 82 VAILVGSM 89 (154)
T ss_dssp EEEECCSC
T ss_pred EEEEeccc
Confidence 88888654
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.0032 Score=57.19 Aligned_cols=93 Identities=15% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc--eeee--cCcceEEeecC--ccCCCCCcEEEEcCCC-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF--QDKAYTVEELT--EDSFDGVDIALFSAGG- 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~--~~~~--~~~~~~v~~~~--~~~~~~~DvVf~a~~~- 111 (376)
+.||.|.||||++|+.|++.|.+++ .++.++.. ...+. .+.. ......+...+ ...+.++|+||-+...
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g---~~V~~~d~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~ 76 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDG---HEVTVVDN-FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPA 76 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEEC-CSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeC-CCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccC
Confidence 4799999999999999999998864 36666531 11111 1100 11123333222 2224589999976432
Q ss_pred ch--h---------------hhhHHHHHhCCCeEEEcCCCC
Q 017153 112 SI--S---------------KKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~~--s---------------~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.. + ....+.+.+.|+++|=+|+..
T Consensus 77 ~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~ 117 (312)
T d2b69a1 77 SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSE 117 (312)
T ss_dssp SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred CchhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChh
Confidence 11 1 122223345678888777754
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.45 E-value=0.00075 Score=56.04 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=50.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCchhhhhH
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
.|||++|. |..|..+++.|.+++| ++.+. +++. .+.-.......... .++ +....+|+++.|++...+.+.+
T Consensus 2 ~kIg~IGl-G~MG~~iA~~L~~~g~---~v~~~-d~~~-~~~~~~~~~~~~~~-~~~~e~~~~~diii~~v~~~~~~~~v 74 (162)
T d3cuma2 2 KQIAFIGL-GHMGAPMATNLLKAGY---LLNVF-DLVQ-SAVDGLVAAGASAA-RSARDAVQGADVVISMLPASQHVEGL 74 (162)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTC---EEEEE-CSSH-HHHHHHHHTTCEEC-SSHHHHHTSCSEEEECCSCHHHHHHH
T ss_pred CEEEEEEE-HHHHHHHHHHHHHCCC---eEEEE-ECch-hhhhhhhhhhcccc-chhhhhccccCeeeecccchhhHHHH
Confidence 68999997 9999999999988744 55433 3321 11000000111111 122 3357899999999987654432
Q ss_pred H-------HHHhCCCeEEEcCCC
Q 017153 119 P-------IAVEKGSIVVDNSSA 134 (376)
Q Consensus 119 ~-------~~~~~G~~VIDlS~~ 134 (376)
- .....|..|||+|..
T Consensus 75 ~~~~~~~~~~l~~g~iiid~st~ 97 (162)
T d3cuma2 75 YLDDDGLLAHIAPGTLVLECSTI 97 (162)
T ss_dssp HHSTTCHHHHSCTTCEEEECSCC
T ss_pred HhccccccccCCCCCEEEECCCC
Confidence 1 112346667776654
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.36 E-value=0.00072 Score=57.54 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=27.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.+|.|.||||++|+.+++.|.+++| .+.+..+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~-~v~v~~~~ 36 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSD-KFVAKGLV 36 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTT-TCEEEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-cEEEEEEc
Confidence 47999999999999999999988754 35555443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=96.32 E-value=0.0021 Score=57.19 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=43.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-------cCcceEEeecCc---c----CCCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-------QDKAYTVEELTE---D----SFDGVD 103 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-------~~~~~~v~~~~~---~----~~~~~D 103 (376)
+|.||.|.||||++|+.|++.|.+++| ++.++. |+........ ....+.+...|. + .+.+++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~-R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH---PTYVLF-RPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEEC-CSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEE-CCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 468899999999999999999988754 565554 3322211110 112233333221 1 236888
Q ss_pred EEEEcCCCc
Q 017153 104 IALFSAGGS 112 (376)
Q Consensus 104 vVf~a~~~~ 112 (376)
++|.+.+..
T Consensus 78 ~~~~~~~~~ 86 (312)
T d1qyda_ 78 VVISALAGG 86 (312)
T ss_dssp EEEECCCCS
T ss_pred hhhhhhhhc
Confidence 998887653
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.30 E-value=0.00097 Score=55.54 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=53.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeecCcceEEeecC--ccCCCCCcEEEEcCCCc---
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGS--- 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~~~~~~v~~~~--~~~~~~~DvVf~a~~~~--- 112 (376)
..+|.|+|+ |-+|+.+++.|..+ ..-++. +++|. .....+... -...+..++ .+.+.++|+||.|++..
T Consensus 24 ~~~ilviGa-G~~g~~v~~~L~~~--g~~~i~-v~nRt~~ka~~l~~~-~~~~~~~~~~~~~~l~~~Divi~atss~~~i 98 (159)
T d1gpja2 24 DKTVLVVGA-GEMGKTVAKSLVDR--GVRAVL-VANRTYERAVELARD-LGGEAVRFDELVDHLARSDVVVSATAAPHPV 98 (159)
T ss_dssp TCEEEEESC-CHHHHHHHHHHHHH--CCSEEE-EECSSHHHHHHHHHH-HTCEECCGGGHHHHHHTCSEEEECCSSSSCC
T ss_pred cCeEEEECC-CHHHHHHHHHHHhc--CCcEEE-EEcCcHHHHHHHHHh-hhcccccchhHHHHhccCCEEEEecCCCCcc
Confidence 479999998 99999999999886 222343 44443 111111110 012222222 12246899999999875
Q ss_pred hhhhhHHHHHh-----CCCeEEEcCCC
Q 017153 113 ISKKFGPIAVE-----KGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~~~~~~~~~-----~G~~VIDlS~~ 134 (376)
..++..+...+ ....+||++-+
T Consensus 99 i~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 99 IHVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp BCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred ccHhhhHHHHHhcccCCCeEEEeecCC
Confidence 45555554432 23479999754
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0049 Score=50.77 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=58.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCC-CeEEEEEecCCCCCceee----e-------c---------------CcceEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLS----F-------Q---------------DKAYTVE 92 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p-~~~l~~v~s~~~~g~~~~----~-------~---------------~~~~~v~ 92 (376)
.||+|+|+||-+|.+.++.+.++ | .+++++++..+....... | . ...+.+.
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~--~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~ 79 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHN--PEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVL 79 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC--TTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEE
T ss_pred CeEEEEcCCcHHHHHHHHHHHhC--CCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccc
Confidence 58999999999999999999887 6 599998875544322111 0 0 0012221
Q ss_pred -ecC-c---cCCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 93 -ELT-E---DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 93 -~~~-~---~~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
..+ . ....++|+|+.|......-+..-.+++.|.++-
T Consensus 80 ~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~ia 121 (151)
T d1q0qa2 80 SGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTIL 121 (151)
T ss_dssp ESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEE
Confidence 100 0 113579999999988888777777788887654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.17 E-value=0.0048 Score=51.88 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=53.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee---------e---cCcceEEee-cC-ccCCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS---------F---QDKAYTVEE-LT-EDSFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~---------~---~~~~~~v~~-~~-~~~~~~~DvV 105 (376)
|||+|+|+ |..|..|...|.+.+| ++... +++..-+.+. . ......+.. .+ .+.+.++|+|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~---~V~l~-~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~I 75 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGN---EVRIW-GTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVV 75 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCC---EEEEE-CCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---EEEEE-EecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchh
Confidence 79999999 9999999999987643 44433 3211100000 0 001112221 12 2235789999
Q ss_pred EEcCCCchhhhhHHHHHh--CCCeEEEcCCC
Q 017153 106 LFSAGGSISKKFGPIAVE--KGSIVVDNSSA 134 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~--~G~~VIDlS~~ 134 (376)
|+|+|...-.+...++.. ....+|.++.-
T Consensus 76 i~avps~~~~~~~~~l~~~l~~~~ii~~tkg 106 (180)
T d1txga2 76 LLGVSTDGVLPVMSRILPYLKDQYIVLISKG 106 (180)
T ss_dssp EECSCGGGHHHHHHHHTTTCCSCEEEECCCS
T ss_pred hcccchhhhHHHHHhhccccccceecccccC
Confidence 999999888888777643 23344444433
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.11 E-value=0.0031 Score=51.49 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=42.7
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCCC----Cceeee-----cCcceEEeecCccCCCCCcEEEEcCC
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSA----GKQLSF-----QDKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~~----g~~~~~-----~~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
||+|+||+|.+|..+.-.|..+ +.. |++.+--.... |..... ......+...+.+++.++|+|+.+.+
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~--~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALR--DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhC--CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEecc
Confidence 8999999999999999988877 444 56654211111 111110 01223344445667789999998866
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 80 ~ 80 (142)
T d1o6za1 80 I 80 (142)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.10 E-value=0.0017 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR 62 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~ 62 (376)
++||+|+||+|.+|..++-.|...
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc
Confidence 579999999999999999988876
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.08 E-value=0.0021 Score=53.15 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.++.||+|+|+ |.+|..+...|..+ +..|++++
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~--~~~el~L~ 37 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALR--ELADVVLY 37 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHH--TCCEEEEE
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhC--CCceEEEE
Confidence 45789999998 99999999877776 54587755
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.07 E-value=0.01 Score=46.40 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=57.4
Q ss_pred CEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchhh
Q 017153 40 PSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISK 115 (376)
Q Consensus 40 irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s~ 115 (376)
.+|||+||+ |..|..+++.|.+++| ++..+.. + ++.+ ..+.+.. +..++ ...|+++.|+|.....
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~---~V~pVnP-~--~~~i----~G~~~y~-sl~~lp~~~D~vvi~vp~~~~~ 70 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGF---EVLPVNP-N--YDEI----EGLKCYR-SVRELPKDVDVIVFVVPPKVGL 70 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECT-T--CSEE----TTEECBS-SGGGSCTTCCEEEECSCHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCC---EEEEEcc-c--cccc----cCccccc-cchhccccceEEEEEeCHHHHH
Confidence 479999987 7789999999988744 6766643 2 1222 1233332 12334 4689999999999999
Q ss_pred hhHHHHHhCCCeEEE
Q 017153 116 KFGPIAVEKGSIVVD 130 (376)
Q Consensus 116 ~~~~~~~~~G~~VID 130 (376)
+..+++.+.|++.+=
T Consensus 71 ~~l~~~~~~g~k~v~ 85 (116)
T d1y81a1 71 QVAKEAVEAGFKKLW 85 (116)
T ss_dssp HHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcCCceEE
Confidence 999999999988553
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.83 E-value=0.0067 Score=49.06 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=42.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceee--e----cCcceEEe-ecCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS--F----QDKAYTVE-ELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~--~----~~~~~~v~-~~~~~~~~~~DvVf~a~~ 110 (376)
|||+|+|| |.+|..+...|..++. .-|++.+--... .+.... . ......+. .-+.+++.++|+|+.|.+
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l-~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQL-ARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-CceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEe
Confidence 79999998 9999999988887622 236765532211 111100 0 11223333 334566789999999875
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 79 ~ 79 (142)
T d1guza1 79 L 79 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.76 E-value=0.0057 Score=50.02 Aligned_cols=71 Identities=21% Similarity=0.408 Sum_probs=43.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCcee--e----ecCcceEEeecCccCCCCCcEEEEcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQL--S----FQDKAYTVEELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~--~----~~~~~~~v~~~~~~~~~~~DvVf~a~~ 110 (376)
..||+|+|| |.+|..+.-.|...+. .-|++++--.. ..|... . +......+..-+.+++.++|+|+.+.+
T Consensus 6 ~~KI~IiGa-G~vG~~~a~~l~~~~l-~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148)
T d1ldna1 6 GARVVVIGA-GFVGASYVFALMNQGI-ADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred CCeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence 579999998 9999999988876622 23666543111 111111 0 111233444445667889999998866
Q ss_pred C
Q 017153 111 G 111 (376)
Q Consensus 111 ~ 111 (376)
.
T Consensus 84 ~ 84 (148)
T d1ldna1 84 A 84 (148)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.63 E-value=0.0036 Score=52.80 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=42.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCC----CCCeEEEEEecCCCCCcee--e----e----cCcceEEeecCccCCCCCc
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRD----FPYRSIKMLASKRSAGKQL--S----F----QDKAYTVEELTEDSFDGVD 103 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~----~p~~~l~~v~s~~~~g~~~--~----~----~~~~~~v~~~~~~~~~~~D 103 (376)
+.+||+|+||+|.+|..|+-+|.+.+ ...+++..+......++.. . . ......+..-+.+++.++|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 35799999999999999998887531 1235666554333222111 0 0 0011222221244578899
Q ss_pred EEEEcCCC
Q 017153 104 IALFSAGG 111 (376)
Q Consensus 104 vVf~a~~~ 111 (376)
+|+.+.+.
T Consensus 103 vVvi~ag~ 110 (175)
T d7mdha1 103 WALLIGAK 110 (175)
T ss_dssp EEEECCCC
T ss_pred eEEEeecc
Confidence 88888654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.61 E-value=0.015 Score=46.96 Aligned_cols=82 Identities=13% Similarity=0.178 Sum_probs=59.2
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
..+|||+||+ +..|..+++.|.+++| ++..+..+. +.+ ....+.. +..++ ...|+|+.++|....
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~---~v~pVnP~~---~~i----~G~~~~~-sl~dlp~~iD~v~i~vp~~~~ 87 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGY---DVYPVNPKY---EEV----LGRKCYP-SVLDIPDKIEVVDLFVKPKLT 87 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTC---EEEEECTTC---SEE----TTEECBS-SGGGCSSCCSEEEECSCHHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCC---EEEEECCcc---ccc----CCCcccc-cccccCccceEEEEEeCHHHH
Confidence 3689999998 7899999999988744 676665321 121 1123322 12334 478999999999999
Q ss_pred hhhHHHHHhCCCeEEEc
Q 017153 115 KKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDl 131 (376)
.+..+++.+.|+++|=+
T Consensus 88 ~~~~~e~~~~g~k~v~~ 104 (139)
T d2d59a1 88 MEYVEQAIKKGAKVVWF 104 (139)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 99999999999986654
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.61 E-value=0.0026 Score=52.01 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=25.6
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEe
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLA 73 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~ 73 (376)
||+|+||+|.+|..+.-+|... +. -|++.+-
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~--~~~~elvLiD 33 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS--PLVSRLTLYD 33 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC--TTCSEEEEEE
T ss_pred eEEEECCCChHHHHHHHHHHhC--CccceEEEEe
Confidence 8999999999999999999877 44 4666654
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.54 E-value=0.0053 Score=49.70 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=41.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceee--e---cCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS--F---QDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~--~---~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
|||+|+|+ |.+|..+.-.|..++. .-|++.+--.. ..|.... . ......+..-+.+++.++|+|+.+.+.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGF-AREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC-CCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc
Confidence 79999998 9999999987776632 23666553111 1111110 0 011223333345567899999998765
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.53 E-value=0.0076 Score=48.85 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=43.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceeee------cCcceEEe-ecCccCCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVE-ELTEDSFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~~------~~~~~~v~-~~~~~~~~~~DvVf~a~~ 110 (376)
.||+|+|+ |++|..+.-+|..+ +..+++.+--... .|..... ......+. .-+.+++.++|+|+.+.+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~--~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag 78 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhC--CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeee
Confidence 69999998 99999999888776 4457666532221 1111100 01122333 234566789999999987
Q ss_pred Cc
Q 017153 111 GS 112 (376)
Q Consensus 111 ~~ 112 (376)
..
T Consensus 79 ~~ 80 (142)
T d1uxja1 79 AP 80 (142)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=95.51 E-value=0.02 Score=52.13 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=26.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+|||.|.||||++|+.|++.|.++++ .+.++.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~-~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHP-DVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCC-CeEEEEE
Confidence 48999999999999999999987643 4555544
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=95.42 E-value=0.0048 Score=54.10 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=27.5
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.|+||.|.||||++|+.|++.|.+++| ++.++.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~ 34 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH---PTFLLV 34 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEEC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEE
Confidence 368999999999999999999988754 566554
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.34 E-value=0.012 Score=48.08 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=43.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCceeee------cCcceEEe-ecCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVE-ELTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~~~~------~~~~~~v~-~~~~~~~~~~DvVf~a~ 109 (376)
+.||+|+|+ |.+|..+..+|..+ +-.|++++--... .|..... ......+. .-+.+++.++|+|+.|.
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~--~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvita 79 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQK--NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTA 79 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEec
Confidence 479999997 99999999888877 4457765432111 1111100 11122333 22355678999999997
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 80 g~ 81 (150)
T d1t2da1 80 GF 81 (150)
T ss_dssp SC
T ss_pred cc
Confidence 74
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.006 Score=49.82 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=24.0
Q ss_pred CEEEEECcccHHHHHHHHHHh-cCCCC-CeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLS-DRDFP-YRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~-~~~~p-~~~l~~v~ 73 (376)
|||+|+|++|.+|..+.-+|. +. + .-|++.+-
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~--~~~~el~L~D 34 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL--PSGSELSLYD 34 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS--CTTCEEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC--CCCcEEEEec
Confidence 799999999999999987664 33 3 34666553
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.17 E-value=0.043 Score=49.23 Aligned_cols=71 Identities=23% Similarity=0.282 Sum_probs=41.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC---eEEEEEecCCCCCceee--e--cCcceEEeecCcc-------CCCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY---RSIKMLASKRSAGKQLS--F--QDKAYTVEELTED-------SFDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~---~~l~~v~s~~~~g~~~~--~--~~~~~~v~~~~~~-------~~~~~DvV 105 (376)
|||.|.|+||++|+.|++.|.+++|.. .++..+......+.... . ....+.+...|.. ...+.|+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v 80 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence 689999999999999999998876543 24444433222222111 0 1123444333311 13578888
Q ss_pred EEcCC
Q 017153 106 LFSAG 110 (376)
Q Consensus 106 f~a~~ 110 (376)
+.+..
T Consensus 81 i~~a~ 85 (322)
T d1r6da_ 81 VHFAA 85 (322)
T ss_dssp EECCS
T ss_pred Eeecc
Confidence 87653
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=95.07 E-value=0.0096 Score=52.09 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=25.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
|||.|.||||++|+.|++.|.++ ..+++++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~---g~~Vi~~ 31 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK---NVEVIPT 31 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS---SEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC---CCEEEEe
Confidence 78999999999999999999886 3466654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=94.96 E-value=0.024 Score=45.76 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=40.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCceeeec-----CcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSFQ-----DKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~~~~-----~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
.||+|+|+ |.+|..+.-.|..++. .-|++++--.. ..|+..... .....+..-+.+++.++|+|+.+.+.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEeccc
Confidence 58999998 9999999988877632 23666553221 222211100 01222333345567889988888664
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=94.92 E-value=0.02 Score=52.76 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=22.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDF 64 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~ 64 (376)
|||-|.||||++|+.|++.|++.++
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~ 25 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQ 25 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC
Confidence 6899999999999999999987633
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=94.88 E-value=0.034 Score=44.51 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=60.2
Q ss_pred CCEEEEECcc---cHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC-CCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaT---G~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~-~~~DvVf~a~~~~~s 114 (376)
..+|||+||| +..|..+++.|.++++ +...+.- +..+..+. ...+.. +..++ ..+|+|+.|+|....
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~---~~~~v~~-~~~~~~i~----g~~~~~-~l~~i~~~iD~v~v~~p~~~v 83 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY---RVLPVNP-RFQGEELF----GEEAVA-SLLDLKEPVDILDVFRPPSAL 83 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTC---EEEEECG-GGTTSEET----TEECBS-SGGGCCSCCSEEEECSCHHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcCCC---CceEEEe-ccccceee----ceeccc-chhhccCCCceEEEeccHHHH
Confidence 3689999998 6789999999988744 5544432 23333321 122221 22334 468999999999999
Q ss_pred hhhHHHHHhCCCeEEEcCCCC
Q 017153 115 KKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDlS~~~ 135 (376)
.+..+++.+.|++.|-+.+.+
T Consensus 84 ~~~v~~~~~~g~k~i~~q~G~ 104 (136)
T d1iuka_ 84 MDHLPEVLALRPGLVWLQSGI 104 (136)
T ss_dssp TTTHHHHHHHCCSCEEECTTC
T ss_pred HHHHHHHHhhCCCeEEEecCc
Confidence 999999999998866554443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=94.71 E-value=0.013 Score=53.42 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee--ecCcceEEeecC---cc-----CCCCCcEEEE
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTVEELT---ED-----SFDGVDIALF 107 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~--~~~~~~~v~~~~---~~-----~~~~~DvVf~ 107 (376)
++++|.|+||||++|+.|++.|.+++| ++++++. +....... .....+.+...| .. .+.++|++|.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~---~V~~l~R-~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGH---HVRAQVH-SLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTC---CEEEEES-CSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCC---eEEEEEC-CcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 468999999999999999999988754 5666653 22211100 011123332222 21 1368899998
Q ss_pred cCCCch------hhhhHHHHHhCCC-eEEEcCCC
Q 017153 108 SAGGSI------SKKFGPIAVEKGS-IVVDNSSA 134 (376)
Q Consensus 108 a~~~~~------s~~~~~~~~~~G~-~VIDlS~~ 134 (376)
..+... .......+.++|+ ++|-.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~aa~~agv~~~v~~Ss~ 111 (350)
T d1xgka_ 78 NTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSM 111 (350)
T ss_dssp CCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred ecccccchhhhhhhHHHHHHHHhCCCceEEEeec
Confidence 765432 2333444455664 45545553
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.63 E-value=0.013 Score=47.42 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=42.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCC-eEEEEEecCC--CCCcee--ee----cCcceEEe-ecCccCCCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKR--SAGKQL--SF----QDKAYTVE-ELTEDSFDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~-~~l~~v~s~~--~~g~~~--~~----~~~~~~v~-~~~~~~~~~~DvVf~a~ 109 (376)
|||+|+|+ |.+|..+.-.|..+ +. -|++.+--.. ..|+.+ .. ......+. .-+.+++.++|+|+.+.
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~--~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTA 77 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhc--CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEec
Confidence 79999998 99999999888765 33 3676553111 112111 10 11122333 33456788999999987
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 78 g~ 79 (142)
T d1ojua1 78 GL 79 (142)
T ss_dssp CC
T ss_pred cc
Confidence 64
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.58 E-value=0.028 Score=46.37 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=41.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCe-EEEEEecCCC---CCce--ee----ecCcceEEeecCccCCCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS---AGKQ--LS----FQDKAYTVEELTEDSFDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~-~l~~v~s~~~---~g~~--~~----~~~~~~~v~~~~~~~~~~~DvVf~a 108 (376)
..||+|+|+ |.+|..+.-.|..+ +.. |++++ +.+. .|.. +. +......+..-+.+++.++|+|+.+
T Consensus 19 ~~KI~IIGa-G~VG~~~A~~l~~~--~l~~elvL~-D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvit 94 (159)
T d2ldxa1 19 RCKITVVGV-GDVGMACAISILLK--GLADELALV-DADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIIT 94 (159)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTT--TSCSEEEEE-CSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEEC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhc--CCCCEEEEE-eCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEe
Confidence 469999998 99999999988887 444 66655 3221 1111 10 0111122233345566788888887
Q ss_pred CCC
Q 017153 109 AGG 111 (376)
Q Consensus 109 ~~~ 111 (376)
.+.
T Consensus 95 ag~ 97 (159)
T d2ldxa1 95 AGA 97 (159)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.019 Score=52.18 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=26.1
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
|||.|.|||||+|+.|++.|.+++ .++..+.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g---~~V~~~d 31 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVIILD 31 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEE
Confidence 789999999999999999998874 4666553
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.48 E-value=0.033 Score=46.00 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=42.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC---CCCce--eee----cCcceEEeecCccCCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR---SAGKQ--LSF----QDKAYTVEELTEDSFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~---~~g~~--~~~----~~~~~~v~~~~~~~~~~~DvVf~a~ 109 (376)
..||+|+|+ |.+|..+.-.|..++. .-|++.+ +.. ..|+. +.. ......+..-+.+++.++|+|+++.
T Consensus 20 ~~KV~IIGa-G~VG~~~A~~l~~~~l-~~ElvLi-D~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 20 NNKITVVGV-GQVGMACAISILGKSL-ADELALV-DVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp SSEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEE-CSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCC-CcEEEEE-EeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 479999998 9999999998887732 2366655 322 11111 100 1111222333456678899888887
Q ss_pred CC
Q 017153 110 GG 111 (376)
Q Consensus 110 ~~ 111 (376)
+.
T Consensus 97 g~ 98 (160)
T d1i0za1 97 GV 98 (160)
T ss_dssp SC
T ss_pred CC
Confidence 65
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.32 E-value=0.02 Score=46.56 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=41.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC--CCce--ee----ecCcceEEeecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQ--LS----FQDKAYTVEELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~--~g~~--~~----~~~~~~~v~~~~~~~~~~~DvVf~a~~~ 111 (376)
.||+|+|+ |++|..++-.|..++. .-|++.+--... .|.. +. +......+..-+.+++.++|+|+.+.|.
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~ 79 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGV-ADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGN 79 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-CSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCC-CceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccc
Confidence 69999997 9999999987776522 236765421111 1111 10 0111223333355678899999998764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.22 E-value=0.13 Score=42.99 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=82.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC--Cc---eee--------ec----------CcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QLS--------FQ----------DKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~--g~---~~~--------~~----------~~~~~v~~~~ 95 (376)
..||||+|+ |.+|+.+...++.+++ ++.++ +++.. .+ .+. .+ ...+.. ..+
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~---~V~l~-D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~ 77 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGT---PILMK-DINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLS 77 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTC---CEEEE-CSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC---eEEEE-ECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccc
Confidence 457999999 9999999988888744 55544 22211 00 000 00 001222 223
Q ss_pred ccCCCCCcEEEEcCCCchhhhh--HHHH---HhCCCeEEEcCCCCCCCC--------CCcEEeeccCHHhhcCcccCCCC
Q 017153 96 EDSFDGVDIALFSAGGSISKKF--GPIA---VEKGSIVVDNSSAFRMVE--------NVPLVIPEVNPEAMSGIKVGMGK 162 (376)
Q Consensus 96 ~~~~~~~DvVf~a~~~~~s~~~--~~~~---~~~G~~VIDlS~~~R~~~--------~~~~~lpevN~~~i~~~~~~~~~ 162 (376)
.+++.++|+|+.|.+-....+. ..++ ...++.+..+|+.+.... +--.++--+|+...-++
T Consensus 78 ~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~l------ 151 (186)
T d1wdka3 78 YGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPL------ 151 (186)
T ss_dssp STTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCE------
T ss_pred cccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCe------
Confidence 4567899999999998766443 2222 345788999999886432 11256666776654421
Q ss_pred CcEEEcCCchHHHHHHHHhHHHHhCCCcEEE
Q 017153 163 GALIANPNCSTIICLMAATPLHRRAKVTRMV 193 (376)
Q Consensus 163 ~~iVa~PgC~~ta~~l~L~pL~~~~~i~~v~ 193 (376)
..+|..+....-.+..+ .-+.+..|-..+.
T Consensus 152 VEiv~~~~T~~~~~~~~-~~~~~~lgk~pv~ 181 (186)
T d1wdka3 152 VEVIRGEKSSDLAVATT-VAYAKKMGKNPIV 181 (186)
T ss_dssp EEEEECSSCCHHHHHHH-HHHHHHTTCEEEE
T ss_pred EEECCCCCCCHHHHHHH-HHHHHHcCCEEEE
Confidence 34676666555554444 3455554443443
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.018 Score=51.46 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR 62 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~ 62 (376)
|+||.|.|||||+|+.|++.|.++
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~ 25 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQR 25 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC
Confidence 579999999999999999999987
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.021 Score=51.86 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.||.|.|||||+|..|++.|++.++ ++..+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~---~V~~l 32 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGY---LPVVI 32 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTC---CEEEE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcC---EEEEE
Confidence 6999999999999999999988744 55554
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.17 Score=42.16 Aligned_cols=87 Identities=18% Similarity=0.353 Sum_probs=53.0
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-----------------------cCcceEEe-e
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-----------------------QDKAYTVE-E 93 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-----------------------~~~~~~v~-~ 93 (376)
.+.||+|||+ |-.|.+....|..++| ++..+-.....|-.+.. .+-++... .
T Consensus 42 ~~k~V~IIGa-GPAGL~AA~~la~~G~---~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~ 117 (179)
T d1ps9a3 42 QKKNLAVVGA-GPAGLAFAINAAARGH---QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHT 117 (179)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTC---EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCC
T ss_pred CCcEEEEECc-cHHHHHHHHHHHhhcc---ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCE
Confidence 4689999999 9999999999998755 77777544433321110 01122221 2
Q ss_pred cCccCCCCCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 94 LTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 94 ~~~~~~~~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
.+.+...+.|.||+|++..-- .......+.|-.|.
T Consensus 118 Vt~~~~~~~d~vilAtG~~~~-~~~~pg~~~g~~v~ 152 (179)
T d1ps9a3 118 VTADQLQAFDETILASGIPNR-ALAQPLIDSGKTVH 152 (179)
T ss_dssp CCSSSSCCSSEEEECCCEECC-TTHHHHHTTTCCEE
T ss_pred EcccccccceeEEEeecCCCc-ccccchhccCCEEE
Confidence 334445688999999987432 23333445555443
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.62 E-value=0.009 Score=50.98 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
|||+|+|+ ||+|.-+.-.|++.+| ++..+
T Consensus 1 MkI~ViGl-G~vGl~~a~~la~~g~---~V~g~ 29 (202)
T d1mv8a2 1 MRISIFGL-GYVGAVCAGCLSARGH---EVIGV 29 (202)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEECC-CHhHHHHHHHHHhCCC---cEEEE
Confidence 78999998 9999999999988644 66554
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.53 E-value=0.043 Score=48.88 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=26.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~ 75 (376)
.||-|.|||||+|+.|++.|++++| ++.++...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~---~V~~~~r~ 33 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGY---RVHGLVAR 33 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEEECC
Confidence 4799999999999999999988644 67666533
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.52 E-value=0.059 Score=42.25 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=42.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceE-Ee-e-cCcc-----CCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYT-VE-E-LTED-----SFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~-v~-~-~~~~-----~~~~~DvVf~a~~~ 111 (376)
|||.|+|+ |.+|+.+++.|.+++ .+++.+-.....-+.+.... +.. +. + .+++ .+.++|.++.+++.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g---~~v~vid~d~~~~~~~~~~~-~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~ 75 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKG---HDIVLIDIDKDICKKASAEI-DALVINGDCTKIKTLEDAGIEDADMYIAVTGK 75 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHC-SSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC---CCcceecCChhhhhhhhhhh-hhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence 79999999 999999999998863 46766643221111111110 122 22 1 1222 24689999999988
Q ss_pred chh
Q 017153 112 SIS 114 (376)
Q Consensus 112 ~~s 114 (376)
+..
T Consensus 76 d~~ 78 (132)
T d1lssa_ 76 EEV 78 (132)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=93.44 E-value=0.057 Score=43.53 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=41.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC--CCCcee--ee---cCcceEEe-ecCccCCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQL--SF---QDKAYTVE-ELTEDSFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~--~~g~~~--~~---~~~~~~v~-~~~~~~~~~~DvVf~a~~~ 111 (376)
.||+|+|+ |.+|..+.-.|..++. .-|++.+--.. ..|+.. .+ ......+. .-+.+++.++|+|+.+.+.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l-~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~ 79 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGI-AREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP 79 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-CSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCC-CcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccc
Confidence 58999998 9999999987776622 23676553221 111111 11 01122232 3334567889999998765
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.27 E-value=0.052 Score=43.91 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=26.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR 76 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~ 76 (376)
|||+|+|++|.+|+.|.+.|.+.+| +++.. +|+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~---~V~l~-~R~ 33 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGH---EIVVG-SRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTC---EEEEE-ESS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCC---EEEEE-ECC
Confidence 7899998889999999999998754 66544 443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.12 E-value=0.045 Score=42.84 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=40.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEee-cCccC-----CCCCcEEEEcCCCch
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDS-----FDGVDIALFSAGGSI 113 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~-~~~~~-----~~~~DvVf~a~~~~~ 113 (376)
+|+.|+|+ |.+|+.+.+.|.++++ +++++-.....-+.+...+....+.+ .+++. +.++|.||.+++...
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~---~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGH---EVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTC---CCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC---eEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchH
Confidence 36899999 9999999999998755 45545322111001111111111211 12222 358899999998764
Q ss_pred h
Q 017153 114 S 114 (376)
Q Consensus 114 s 114 (376)
.
T Consensus 77 ~ 77 (134)
T d2hmva1 77 Q 77 (134)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.08 E-value=0.11 Score=39.99 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=27.1
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
.+.|+.|+|+ |++|.|+...|... ..++..+..
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~---G~~Vtiv~~ 53 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARL---GAEVTVLEA 53 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHc---CCceEEEEe
Confidence 4579999999 99999999999875 457776653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.03 E-value=0.039 Score=50.99 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=25.9
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
|||.|.|||||+|..|++.|++.+| ++..+
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~---~V~~i 31 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNY---EVCIV 31 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcC---EEEEE
Confidence 7999999999999999999988644 66655
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.051 Score=45.69 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCch-----
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI----- 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~----- 113 (376)
..+|+|+|. |.+|+++.+++..- .+++.+........ .. ....+..+ .+.+..+|++++++|-..
T Consensus 44 ~~~vgiiG~-G~IG~~va~~l~~f---g~~v~~~d~~~~~~----~~-~~~~~~~l-~ell~~sDii~i~~plt~~T~~l 113 (188)
T d1sc6a1 44 GKKLGIIGY-GHIGTQLGILAESL---GMYVYFYDIENKLP----LG-NATQVQHL-SDLLNMSDVVSLHVPENPSTKNM 113 (188)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEECSSCCCC----CT-TCEECSCH-HHHHHHCSEEEECCCSSTTTTTC
T ss_pred ceEEEEeec-ccchhhhhhhcccc---cceEeeccccccch----hh-hhhhhhhH-HHHHhhccceeecccCCcchhhh
Confidence 479999998 99999999998763 56766553221111 00 11112211 123467899999988543
Q ss_pred -hhhhHHHHHhCCCeEEE
Q 017153 114 -SKKFGPIAVEKGSIVVD 130 (376)
Q Consensus 114 -s~~~~~~~~~~G~~VID 130 (376)
.++....+ +.|+.+|-
T Consensus 114 i~~~~l~~m-k~~a~lIN 130 (188)
T d1sc6a1 114 MGAKEISLM-KPGSLLIN 130 (188)
T ss_dssp BCHHHHHHS-CTTEEEEE
T ss_pred ccHHHHhhC-CCCCEEEE
Confidence 23333322 45677773
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=92.90 E-value=0.022 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDR 62 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~ 62 (376)
|||.|.|+||++|+.|++.|.++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~ 23 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPV 23 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC
Confidence 78999999999999999999876
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=92.87 E-value=0.033 Score=51.35 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=25.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
|||-|.|||||+|+.|++.|+++ ...++.++
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~--~~~~V~~~ 33 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRD--TNHSVVIV 33 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CCCEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHh--CCCEEEEE
Confidence 79999999999999999988653 34577765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.71 E-value=0.034 Score=46.29 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=54.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecCc----cCCCCCcEEEEcC--CC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTE----DSFDGVDIALFSA--GG 111 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~----~~~~~~DvVf~a~--~~ 111 (376)
+-||.|+|+ |.+|.+-++..... ..++.++-.+...-+.+.. ....+.....+. +.+.++|+|+.|. |.
T Consensus 32 pa~V~ViGa-GvaG~~A~~~A~~l---GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG 107 (168)
T d1pjca1 32 PGKVVILGG-GVVGTEAAKMAVGL---GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPG 107 (168)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred CcEEEEECC-ChHHHHHHHHHhhC---CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCC
Confidence 479999999 99999999988775 3455555332111111111 112233322222 2346899999984 33
Q ss_pred c-----hhhhhHHHHHhCCCeEEEcCCCC
Q 017153 112 S-----ISKKFGPIAVEKGSIVVDNSSAF 135 (376)
Q Consensus 112 ~-----~s~~~~~~~~~~G~~VIDlS~~~ 135 (376)
. ++++.+... +.|..|||++.|.
T Consensus 108 ~~aP~lIt~~mv~~M-k~GSVIVDvaidq 135 (168)
T d1pjca1 108 RRAPILVPASLVEQM-RTGSVIVDVAVDQ 135 (168)
T ss_dssp SSCCCCBCHHHHTTS-CTTCEEEETTCTT
T ss_pred cccCeeecHHHHhhc-CCCcEEEEeecCC
Confidence 3 344433322 5799999999985
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.68 E-value=0.051 Score=49.07 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=26.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++++|-|.|+||++|+.|++.|.+++| ++..+.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~---~V~~~d 47 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQ---KVVGLD 47 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC---EEEEEE
Confidence 357899999999999999999988754 666553
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=92.56 E-value=0.056 Score=44.70 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=48.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeec---CcceEEeecCccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ---DKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~---~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
..+|.|+|+ |-+++.++..|.+. + .++..+.......+.+... ..++.....+......+|+++.|+|.+...
T Consensus 18 ~k~vlIlGa-GGaarai~~aL~~~--~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~~ 93 (171)
T d1p77a1 18 NQHVLILGA-GGATKGVLLPLLQA--Q-QNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG 93 (171)
T ss_dssp TCEEEEECC-SHHHHTTHHHHHHT--T-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC----
T ss_pred CCEEEEECC-cHHHHHHHHHHccc--C-ceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecccccccc
Confidence 478999998 88899999988875 3 4666454221222222111 012222232333457899999999987643
Q ss_pred hhH---HHHHhCCCeEEEcC
Q 017153 116 KFG---PIAVEKGSIVVDNS 132 (376)
Q Consensus 116 ~~~---~~~~~~G~~VIDlS 132 (376)
... ......+..++|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~D~v 113 (171)
T d1p77a1 94 GTASVDAEILKLGSAFYDMQ 113 (171)
T ss_dssp ---CCCHHHHHHCSCEEESC
T ss_pred cccchhhhhhcccceeeeee
Confidence 321 22334466677654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=92.51 E-value=0.16 Score=38.98 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=26.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
..||.|+|+ |++|.|+...|... ..++..+..
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~---g~~Vtlv~~ 53 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRL---GIDSYIFAR 53 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTT---TCEEEEECS
T ss_pred CCEEEEECC-chHHHHHHHHHHhc---cccceeeeh
Confidence 479999999 99999999999874 567776653
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.50 E-value=0.14 Score=39.08 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.3
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
.+.|+.|+|+ |++|.|++..|.+. ..++..+..
T Consensus 20 ~p~~vvIiGg-G~~G~E~A~~l~~~---g~~Vtlve~ 52 (115)
T d1lvla2 20 LPQHLVVVGG-GYIGLELGIAYRKL---GAQVSVVEA 52 (115)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHH---TCEEEEECS
T ss_pred CCCeEEEECC-CHHHHHHHHHHhhc---ccceEEEee
Confidence 3479999999 99999999999886 346666643
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.42 E-value=0.074 Score=44.54 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=40.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS 112 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~ 112 (376)
..+|+|+|+ |.+|+++.+++..- .+++.+.......+. ......+ .+.+..+|+|++++|-.
T Consensus 42 gk~vgIiG~-G~IG~~va~~l~~~---g~~v~~~d~~~~~~~-------~~~~~~l-~ell~~sDiv~~~~pl~ 103 (181)
T d1qp8a1 42 GEKVAVLGL-GEIGTRVGKILAAL---GAQVRGFSRTPKEGP-------WRFTNSL-EEALREARAAVCALPLN 103 (181)
T ss_dssp TCEEEEESC-STHHHHHHHHHHHT---TCEEEEECSSCCCSS-------SCCBSCS-HHHHTTCSEEEECCCCS
T ss_pred CceEEEecc-ccccccceeeeecc---ccccccccccccccc-------eeeeech-hhhhhccchhhcccccc
Confidence 489999999 99999999999864 457765532111110 0001111 23358999999998865
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=92.42 E-value=0.042 Score=45.46 Aligned_cols=90 Identities=13% Similarity=0.286 Sum_probs=52.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeeec-Cc--c-eEEeecC--ccCCCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DK--A-YTVEELT--EDSFDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~~-~~--~-~~v~~~~--~~~~~~~DvVf~a~~~~ 112 (376)
.+|||||. |..|..+.+.|.+++| ++... +++.. -+.+... .+ . ......+ .+....+|++++|+++.
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~ 77 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGF---VVCAF-NRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAG 77 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTC---CEEEE-CSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTT
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCch
Confidence 57999998 9999999999998754 55433 33221 1111110 00 0 1111111 12246789999999886
Q ss_pred hhh-hhHHHH---HhCCCeEEEcCCC
Q 017153 113 ISK-KFGPIA---VEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~-~~~~~~---~~~G~~VIDlS~~ 134 (376)
... +....+ +..|..|||+|..
T Consensus 78 ~~v~~v~~~l~~~~~~g~iiid~sT~ 103 (176)
T d2pgda2 78 QAVDNFIEKLVPLLDIGDIIIDGGNS 103 (176)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred HHHHHHHHHHHhccccCcEEEecCcc
Confidence 543 223332 3468889998865
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.39 E-value=0.076 Score=47.85 Aligned_cols=31 Identities=26% Similarity=0.170 Sum_probs=26.3
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+||.|.|+|||+|..|++.|.+.++ ++..+.
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~---~V~~~~ 39 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGA---TVKGYS 39 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCC---EEEEEE
Confidence 7999999999999999999998743 666554
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.37 E-value=0.062 Score=48.09 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.++-|.|||||+|+.|++.|.+.+| ++.++.
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~---~V~~~~ 32 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGY---EVHGLI 32 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcC---EEEEEE
Confidence 36788899999999999999988744 676665
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=92.24 E-value=0.057 Score=47.99 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=25.0
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
||-|.||||++|+.|++.|.++++ ++.++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~---~V~~i 30 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGI---DLIVF 30 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcC---EEEEE
Confidence 799999999999999999988743 67665
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=91.99 E-value=0.3 Score=37.07 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
+.|+.|+|+ |++|.|+...|........++..+..
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~ 52 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYR 52 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceecc
Confidence 369999999 99999999877543224567766653
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=91.65 E-value=0.076 Score=42.87 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=38.1
Q ss_pred EEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 41 rVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
|||+||- |..|..+.+.|.+.+ ..++ . .+. ..+..... ..........+...++|++|.+++....
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g---~~~~-~-~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 67 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRF---PTLV-W-NRT-FEKALRHQ-EEFGSEAVPLERVAEARVIFTCLPTTRE 67 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTS---CEEE-E-CSS-THHHHHHH-HHHCCEECCGGGGGGCSEEEECCSSHHH
T ss_pred eEEEEeH-HHHHHHHHHHHHhCC---CEEE-E-eCC-HHHHHHHH-HHcCCcccccccccceeEEEecccchhh
Confidence 7999998 999999999998752 2332 2 222 11111110 0001111123445678999999988654
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=91.41 E-value=0.063 Score=45.61 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=40.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|||+|. |.+|+++.++|..- .+++.+.......+. ........+ .+.+..+|+|.+++|....
T Consensus 45 ~ktvgIiG~-G~IG~~va~~l~~f---g~~v~~~d~~~~~~~-----~~~~~~~~l-~~l~~~~D~v~~~~plt~~ 110 (199)
T d1dxya1 45 QQTVGVMGT-GHIGQVAIKLFKGF---GAKVIAYDPYPMKGD-----HPDFDYVSL-EDLFKQSDVIDLHVPGIEQ 110 (199)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHT---TCEEEEECSSCCSSC-----CTTCEECCH-HHHHHHCSEEEECCCCCGG
T ss_pred ceeeeeeec-cccccccccccccc---ceeeeccCCccchhh-----hcchhHHHH-HHHHHhcccceeeeccccc
Confidence 379999998 99999999999763 467665432211111 011222221 1224679999999887543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.27 E-value=0.19 Score=40.10 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=25.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|-|+|+ |.+|.+-++.|.+. ..++.+++
T Consensus 13 gkrvLViGg-G~va~~ka~~Ll~~---GA~VtVva 43 (150)
T d1kyqa1 13 DKRILLIGG-GEVGLTRLYKLMPT---GCKLTLVS 43 (150)
T ss_dssp TCEEEEEEE-SHHHHHHHHHHGGG---TCEEEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEEEe
Confidence 589999999 99999999999985 45666654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.11 Score=42.36 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEee--cCccC--------C-CCCcEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEE--LTEDS--------F-DGVDIALF 107 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~--~~~~~--------~-~~~DvVf~ 107 (376)
-+|.|+|+ |-+|.-.+.++... ..-++.++.. +..-..+. ..+.+..+.. .++.+ . .++|+||+
T Consensus 28 d~VlI~G~-G~iG~~~~~~a~~~--G~~~Vi~~d~-~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 28 HKVLVCGA-GPIGMVTLLVAKAM--GAAQVVVTDL-SATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCSEEEEEES-CHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEECC-CccHHHHHHHHHHc--CCceEEeccC-CHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 58999998 99999999888765 3335554432 21100000 0111222211 11110 1 37899999
Q ss_pred cCCCchhhhhHHHHHhCCCeEEEcC
Q 017153 108 SAGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
|+|...+.+.+-.+...|.+++-.+
T Consensus 104 ~~G~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 104 CTGAEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp CSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCchhHHHHHHHhcCCCEEEEEe
Confidence 9999888777777777787777554
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.88 E-value=0.11 Score=46.61 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=25.3
Q ss_pred CEE-EEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSV-AVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irV-aIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.|| -|.|||||+|+.|++.|.+++| ++.++.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~---~V~~i~ 32 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGY---EVHGIV 32 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcC---EEEEEE
Confidence 478 5889999999999999988744 777664
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=90.71 E-value=0.15 Score=46.07 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|.|.|+|||+|..|++.|.+++ .++.++.
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G---~~V~~~v 42 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHG---YKVRGTA 42 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTT---CEEEEEE
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCc---CEEEEEe
Confidence 4799999999999999999998874 4666554
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=90.64 E-value=0.1 Score=42.77 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=43.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-CCCceeeecC---cceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGKQLSFQD---KAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-~~g~~~~~~~---~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|.|+|+ |-+++.++-.|.+. . .++. +..|+ ...+.+.... ..+.....+......+|+++-|+|.+..
T Consensus 18 ~k~vlIlGa-GGaarai~~al~~~--g-~~i~-I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~ 92 (170)
T d1nyta1 18 GLRILLIGA-GGASRGVLLPLLSL--D-CAVT-ITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS 92 (170)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT--T-CEEE-EECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred CCEEEEECC-cHHHHHHHHHhccc--c-eEEE-eccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence 478999999 88899999999886 3 4655 44443 1112211100 1122222222234578999999998865
Q ss_pred h
Q 017153 115 K 115 (376)
Q Consensus 115 ~ 115 (376)
.
T Consensus 93 ~ 93 (170)
T d1nyta1 93 G 93 (170)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.42 E-value=0.21 Score=38.52 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+.|+.|+|+ |++|.|+...|... ..++..+.
T Consensus 22 ~p~~~vIiG~-G~ig~E~A~~l~~l---G~~Vtii~ 53 (122)
T d1v59a2 22 IPKRLTIIGG-GIIGLEMGSVYSRL---GSKVTVVE 53 (122)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC
T ss_pred CCCeEEEECC-CchHHHHHHHHHhh---CcceeEEE
Confidence 3479999999 99999999999875 44665553
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.39 E-value=0.023 Score=46.53 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc---C------CCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED---S------FDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~---~------~~~~DvVf~a~ 109 (376)
.-+|.|+|++|-+|...+.++... ...++..+......-+.....+.+..+...+.+ . -.++|++|+|.
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~--g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~ 105 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN 105 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred CCEEEEEeccccceeeeeeccccc--ccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence 368999999999999999888775 444555443221100000001122222211111 1 13589999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
+...+.+.+-.+++.|.+++-.+
T Consensus 106 g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 106 NSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CCHHHHTTGGGGEEEEEEEEECC
T ss_pred ccchHHHhhhhhcccCCEEEEec
Confidence 98776666555555666666443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=90.35 E-value=0.098 Score=44.37 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=40.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..+|||+|. |.+|+++.++|..- .+++.+. ++..... ... .......+ .+.+..+|++++|+|-...
T Consensus 43 gk~vgIiG~-G~IG~~va~~l~~f---g~~V~~~-d~~~~~~-~~~--~~~~~~~l-~~~l~~sDii~~~~plt~~ 109 (197)
T d1j4aa1 43 DQVVGVVGT-GHIGQVFMQIMEGF---GAKVITY-DIFRNPE-LEK--KGYYVDSL-DDLYKQADVISLHVPDVPA 109 (197)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHT---TCEEEEE-CSSCCHH-HHH--TTCBCSCH-HHHHHHCSEEEECSCCCGG
T ss_pred CCeEEEecc-cccchhHHHhHhhh---ccccccc-Ccccccc-ccc--ceeeeccc-cccccccccccccCCcccc
Confidence 479999998 99999999999753 4576554 3221110 000 01111111 1224689999999986543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.98 E-value=0.24 Score=37.62 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.6
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+.||.|+|+ |++|.|+...|... ..++..+.
T Consensus 21 ~p~~v~IiGg-G~ig~E~A~~l~~~---G~~Vtlve 52 (117)
T d1ebda2 21 VPKSLVVIGG-GYIGIELGTAYANF---GTKVTILE 52 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEE
T ss_pred cCCeEEEECC-Cccceeeeeeeccc---ccEEEEEE
Confidence 3479999999 99999999999886 34665553
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=0.14 Score=46.65 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=24.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
++|-|.||||++|+.|++.|.+.+| ++.++.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~---~V~~~~ 32 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGY---EVHGIK 32 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC---EEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcC---EEEEEE
Confidence 3556899999999999999988743 666554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=89.65 E-value=0.44 Score=38.92 Aligned_cols=105 Identities=25% Similarity=0.292 Sum_probs=57.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecC--c-c---CC---CCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELT--E-D---SF---DGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~--~-~---~~---~~~DvVf~a 108 (376)
.-+|.|+|+ |-+|...++++...+ ..++..+. .+..-.... ..+.+..+..-+ . + ++ .++|+||+|
T Consensus 28 g~~VlI~Ga-G~vGl~~~q~ak~~G--a~~Vi~~d-~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~ 103 (174)
T d1jqba2 28 GSSVVVIGI-GAVGLMGIAGAKLRG--AGRIIGVG-SRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMA 103 (174)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTT--CSCEEEEC-CCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCEEEEEcC-Ccchhhhhhhhhccc--cccccccc-chhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEc
Confidence 357999998 999999988887652 22344333 221100110 011222222111 1 1 11 369999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCH
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNP 150 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~ 150 (376)
++...+.+.+-.++..|.+++-.+- +. .....-+|.++.
T Consensus 104 ~g~~~~~~~a~~~~~~~G~iv~~G~-~~--~~~~~~~~~~~~ 142 (174)
T d1jqba2 104 GGGSETLSQAVKMVKPGGIISNINY-HG--SGDALLIPRVEW 142 (174)
T ss_dssp SSCTTHHHHHHHHEEEEEEEEECCC-CC--SSSEEEEETTTT
T ss_pred cCCHHHHHHHHHHHhcCCEEEEEee-cC--CCCcCcCcHhHH
Confidence 9987766665566666777775542 21 233445565543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=89.43 E-value=0.078 Score=43.53 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=49.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC-CCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhh-
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK- 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~-~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~- 116 (376)
..||.|+|+ |-+++.++..|.+.+.. ++. +.+|+. ..+.+.... .. ...+.....++|+++-|||-+....
T Consensus 17 ~~~vlIlGa-GGaarai~~aL~~~g~~--~I~-I~nR~~~ka~~L~~~~-~~--~~~~~~~~~~~DliINaTpiGm~~~~ 89 (167)
T d1npya1 17 NAKVIVHGS-GGMAKAVVAAFKNSGFE--KLK-IYARNVKTGQYLAALY-GY--AYINSLENQQADILVNVTSIGMKGGK 89 (167)
T ss_dssp TSCEEEECS-STTHHHHHHHHHHTTCC--CEE-EECSCHHHHHHHHHHH-TC--EEESCCTTCCCSEEEECSSTTCTTST
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCC--EEE-EecccHHHHHHHHHhh-hh--hhhhcccccchhhheeccccCCcccc
Confidence 468999999 88899999999887433 333 334431 111111110 11 1112223457899999999653211
Q ss_pred ------hHHHHHhCCCeEEEcC
Q 017153 117 ------FGPIAVEKGSIVVDNS 132 (376)
Q Consensus 117 ------~~~~~~~~G~~VIDlS 132 (376)
+-......+..|+|+-
T Consensus 90 ~~~~l~~~~~~~~~~~~v~D~v 111 (167)
T d1npya1 90 EEMDLAFPKAFIDNASVAFDVV 111 (167)
T ss_dssp TTTSCSSCHHHHHHCSEEEECC
T ss_pred ccccccccHhhcCCcceEEEEe
Confidence 1123345567788764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.30 E-value=0.045 Score=45.39 Aligned_cols=89 Identities=17% Similarity=0.044 Sum_probs=51.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc---------CCCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED---------SFDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~---------~~~~~DvVf~a~ 109 (376)
.-+|.|.||+|-+|.-++++.... ..++.++++++..-+.....+.+..+...++. .-.++|+||+|.
T Consensus 30 G~~VlV~ga~ggvG~~aiqlak~~---Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v 106 (182)
T d1v3va2 30 GETVLVSAAAGAVGSVVGQIAKLK---GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 106 (182)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCEEEEEeCCCchhHHHHHHHHcc---CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEec
Confidence 368999999999999999988765 45777766543211111112222223211111 114799999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEc
Q 017153 110 GGSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDl 131 (376)
+.....+.... +..|.+++..
T Consensus 107 G~~~~~~~~~~-l~~~G~~v~~ 127 (182)
T d1v3va2 107 GGEFLNTVLSQ-MKDFGKIAIC 127 (182)
T ss_dssp CHHHHHHHGGG-EEEEEEEEEC
T ss_pred Cchhhhhhhhh-ccCCCeEEee
Confidence 86544433333 3445555543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=89.23 E-value=0.35 Score=38.89 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=52.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEE-ee-cCc--cC---------CCCCcEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTV-EE-LTE--DS---------FDGVDIA 105 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v-~~-~~~--~~---------~~~~DvV 105 (376)
-+|.|+|+ |-+|.-.+.++... ..+++++...... ..+. ..+.+..+ .. .+. .+ -.++|+|
T Consensus 28 ~~vlV~G~-G~vG~~~~~~ak~~---Ga~vi~v~~~~~r-~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 28 TTVLVIGA-GPIGLVSVLAAKAY---GAFVVCTARSPRR-LEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT---TCEEEEEESCHHH-HHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CEEEEEcc-cccchhhHhhHhhh---cccccccchHHHH-HHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 58999996 99999999888765 3576655432110 0000 01111111 11 110 00 1468999
Q ss_pred EEcCCCchhhhhHHHHHhCCCeEEEcC
Q 017153 106 LFSAGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 106 f~a~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
|+|++...+.+.+-+++..|.+++-.+
T Consensus 103 id~~g~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 103 IDCSGNEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp EECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred eecCCChHHHHHHHHHHhcCCceEEEe
Confidence 999999877777666777777777554
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=89.23 E-value=0.1 Score=43.11 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCEEEEECcccHHHHH--HHHHHhcC-CCCCeEEEEEecCCCC--Cce------eeecCcceEEee-cC-ccCCCCCcEE
Q 017153 39 APSVAVVGVTGAVGQE--FLSVLSDR-DFPYRSIKMLASKRSA--GKQ------LSFQDKAYTVEE-LT-EDSFDGVDIA 105 (376)
Q Consensus 39 ~irVaIvGaTG~vG~e--Llr~L~~~-~~p~~~l~~v~s~~~~--g~~------~~~~~~~~~v~~-~~-~~~~~~~DvV 105 (376)
.|||+|+|| |.+|.. ++..|... .++..|++.+--.... +.. ......+..+.. .| .+.+.++|+|
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 489999998 998854 34334332 2234588765322110 100 001122344543 23 3457899999
Q ss_pred EEcCCCchhhh
Q 017153 106 LFSAGGSISKK 116 (376)
Q Consensus 106 f~a~~~~~s~~ 116 (376)
+.+...+-...
T Consensus 81 v~~~~~g~~~~ 91 (171)
T d1obba1 81 INTAMVGGHTY 91 (171)
T ss_dssp EECCCTTHHHH
T ss_pred eeecccccccc
Confidence 99987665443
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=89.22 E-value=0.11 Score=43.87 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=40.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc-CCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~-~~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+++.+.|..- .+++.+.. +......... ..+... .+.+ .+..+|+|..++|-..
T Consensus 49 gktvgIiG~-G~IG~~va~~l~~f---g~~v~~~d-~~~~~~~~~~--~~~~~~-~~l~~ll~~sD~i~~~~plt~ 116 (193)
T d1mx3a1 49 GETLGIIGL-GRVGQAVALRAKAF---GFNVLFYD-PYLSDGVERA--LGLQRV-STLQDLLFHSDCVTLHCGLNE 116 (193)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEEC-TTSCTTHHHH--HTCEEC-SSHHHHHHHCSEEEECCCCCT
T ss_pred CceEEEecc-ccccccceeeeecc---ccceeecc-Ccccccchhh--hccccc-cchhhccccCCEEEEeecccc
Confidence 379999999 99999999999753 56776543 2211111000 011111 1222 2468899999888643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.95 E-value=0.062 Score=44.16 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=52.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc---C------CCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED---S------FDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~---~------~~~~DvVf~a~ 109 (376)
.-+|.|.||+|-+|.-+++++... ..++.++.++...-+.+...+.+..+...+++ . -.++|++|+|.
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~---g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMI---GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CCEEEEECCCCCcccccchhhccc---cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 368999999999999999988664 45666655432211111112223223211111 1 14799999999
Q ss_pred CCchhhhhHHHHHhCCCeEEEcC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
+....... -++++.+.++|.+.
T Consensus 103 g~~~~~~~-~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 103 AGEAIQRG-VQILAPGGRFIELG 124 (183)
T ss_dssp CTHHHHHH-HHTEEEEEEEEECS
T ss_pred cchHHHHH-HHHhcCCCEEEEEc
Confidence 97544333 34445566777653
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=88.93 E-value=0.14 Score=44.36 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=23.6
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
|.|.|+|||+|+.|++.|.++ ...++..+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~--g~~~V~~~ 30 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDK--GITDILVV 30 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTT--TCCCEEEE
T ss_pred EEEecCccHHHHHHHHHHHhC--CCCeEEEE
Confidence 679999999999999999987 33455555
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=88.92 E-value=0.13 Score=43.01 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-ccCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~~~~~~~DvVf~a~~~~~ 113 (376)
..+|+|+|+ |.+|+++++.|..- ..++.+.. +.......... ...... .+ .+.+..+|+|+.++|-..
T Consensus 44 ~~~vgiiG~-G~IG~~va~~l~~f---g~~v~~~d-~~~~~~~~~~~-~~~~~~-~~l~~~l~~sD~v~~~~plt~ 112 (188)
T d2naca1 44 AMHVGTVAA-GRIGLAVLRRLAPF---DVHLHYTD-RHRLPESVEKE-LNLTWH-ATREDMYPVCDVVTLNCPLHP 112 (188)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGG---TCEEEEEC-SSCCCHHHHHH-HTCEEC-SSHHHHGGGCSEEEECSCCCT
T ss_pred ccceeeccc-cccchhhhhhhhcc---CceEEEEe-ecccccccccc-cccccc-CCHHHHHHhccchhhcccccc
Confidence 589999998 99999999999763 45655443 22211111100 011111 12 233578999999988654
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.90 E-value=0.19 Score=41.46 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=26.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEec
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s 74 (376)
|||.|+|+ |++|.+++..|.+. .+..++..+..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~-~~~~~V~v~~~ 33 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNL-HPDAEIQWYEK 33 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHH-CTTSEEEEEES
T ss_pred CEEEEECC-cHHHHHHHHHHHhc-CCCCeEEEEeC
Confidence 79999999 99999999988654 26778876653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.68 E-value=0.23 Score=40.20 Aligned_cols=86 Identities=17% Similarity=0.072 Sum_probs=48.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cC---------CCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DS---------FDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~---------~~~~DvVf~a~ 109 (376)
-+|.|.|+ |-+|...+.++... -...+....+....-+.....+.+..+...+. +. -.++|+||+|+
T Consensus 30 ~tVlI~Ga-GGvG~~aiq~ak~~--G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~ 106 (176)
T d2fzwa2 30 SVCAVFGL-GGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI 106 (176)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEecc-hhHHHHHHHHHHHH--hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecC
Confidence 58999999 56788888877665 23344433322111111111122222221111 11 14799999999
Q ss_pred CCchhhhhHHHHHhCCCeE
Q 017153 110 GGSISKKFGPIAVEKGSIV 128 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~V 128 (376)
+...+.+.+..+...|..+
T Consensus 107 G~~~~~~~~~~~~~~g~~~ 125 (176)
T d2fzwa2 107 GNVKVMRAALEACHKGWGV 125 (176)
T ss_dssp CCHHHHHHHHHTBCTTTCE
T ss_pred CCHHHHHHHHHhhcCCcee
Confidence 9988877777666666443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.59 E-value=0.31 Score=43.77 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG 79 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g 79 (376)
++||+|||| |..|...++.|++. ..++.++-.+...|
T Consensus 2 ~KKI~IIGa-G~sGL~aA~~L~k~---G~~V~viEk~~~iG 38 (314)
T d2bi7a1 2 SKKILIVGA-GFSGAVIGRQLAEK---GHQVHIIDQRDHIG 38 (314)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTT---TCEEEEEESSSSSS
T ss_pred CCEEEEECC-cHHHHHHHHHHHhC---CCCEEEEECCCCCc
Confidence 579999999 99999999999986 35777777666655
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.47 E-value=0.38 Score=39.66 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=57.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchhhhhH
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~~~~ 118 (376)
..+|.|+|.+..+|+-|..+|.++ ...+....+.. .++ .+...++|+++.|.|..-- .-
T Consensus 39 Gk~vvVIGrS~iVGrPLa~lL~~~---gatVt~~~~~t----------~~l------~~~~~~aDivi~a~G~~~~--i~ 97 (170)
T d1a4ia1 39 GRHAVVVGRSKIVGAPMHDLLLWN---NATVTTCHSKT----------AHL------DEEVNKGDILVVATGQPEM--VK 97 (170)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT---TCEEEEECTTC----------SSH------HHHHTTCSEEEECCCCTTC--BC
T ss_pred cceEEEEecCCccchHHHHHHHhc---cCceEEEeccc----------ccH------HHHHhhccchhhccccccc--cc
Confidence 489999999999999999999885 44554333211 001 1123678999999876332 22
Q ss_pred HHHHhCCCeEEEcCCCCCCCCCC---cEEeeccCHHhhc
Q 017153 119 PIAVEKGSIVVDNSSAFRMVENV---PLVIPEVNPEAMS 154 (376)
Q Consensus 119 ~~~~~~G~~VIDlS~~~R~~~~~---~~~lpevN~~~i~ 154 (376)
+...+.|+.|||..-.+-.++.. .-.+-.++.+...
T Consensus 98 ~~~vk~g~iviDvgi~~~~~~~~~~~~~~~gdvd~~~v~ 136 (170)
T d1a4ia1 98 GEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAK 136 (170)
T ss_dssp GGGSCTTCEEEECCCBC----------CCBCSBCHHHHT
T ss_pred cccccCCCeEeccCcccccccccCCCCEEecccchHhhh
Confidence 33457899999997643222111 1234556666665
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=88.43 E-value=0.18 Score=42.00 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=26.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+|-|.|++|-+|+++.+.|.++ ..+++.+.
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~---G~~V~~~~ 54 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGE---GAEVVLCG 54 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhh---ccchhhcc
Confidence 489999999999999999999987 34666544
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=88.25 E-value=0.19 Score=39.96 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.||.|||+ |++|.+++..|.+++ ++.++..+.
T Consensus 3 krivIvGg-G~~G~e~A~~l~~~~-~~~~Vtlie 34 (186)
T d1fcda1 3 RKVVVVGG-GTGGATAAKYIKLAD-PSIEVTLIE 34 (186)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHC-TTSEEEEEC
T ss_pred CcEEEECc-cHHHHHHHHHHHHcC-CCCcEEEEE
Confidence 69999999 999999999887653 578888764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.25 E-value=0.26 Score=38.05 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRD 63 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~ 63 (376)
+.|+.|+|+ |++|.|+...|.+.+
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG 43 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIG 43 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTT
T ss_pred CCeEEEECC-CccHHHHHHHHhhcC
Confidence 368999999 999999999998763
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=88.24 E-value=0.2 Score=42.36 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=26.8
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS 77 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~ 77 (376)
|||+|||| |..|......|.++++ ++.++-..+.
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~---~V~vlE~~~~ 34 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGT---DAVLLESSAR 34 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTC---CEEEECSSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCC---CEEEEecCCC
Confidence 68999999 9999999999998754 5666644333
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.00 E-value=0.19 Score=40.68 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=51.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCcee-eecCcceEEeecCc----cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL-SFQDKAYTVEELTE----DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~-~~~~~~~~v~~~~~----~~~~~~DvVf~a~~~~~ 113 (376)
.-+|.|+|+ |-+|.-.++++... ..+.+.+.++. .-... ...+.+..+...+. ....++|++|+|++...
T Consensus 31 G~~VlI~Ga-G~vG~~a~qlak~~---Ga~~i~~~~~~-~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~ 105 (168)
T d1uufa2 31 GKKVGVVGI-GGLGHMGIKLAHAM---GAHVVAFTTSE-AKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH 105 (168)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEESSG-GGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred CCEEEEecc-chHHHHHHHHhhcc---cccchhhccch-hHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch
Confidence 478999998 99999988887764 34555444322 21111 11122333322121 12357999999998766
Q ss_pred hhhhHHHHHhCCCeEEEcC
Q 017153 114 SKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 114 s~~~~~~~~~~G~~VIDlS 132 (376)
+.+..-.++..|.+++-.+
T Consensus 106 ~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 106 NLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp CHHHHHTTEEEEEEEEECC
T ss_pred hHHHHHHHHhcCCEEEEec
Confidence 5444444445556666543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=87.82 E-value=0.28 Score=39.94 Aligned_cols=88 Identities=16% Similarity=0.099 Sum_probs=48.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecC-c---cCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E---DSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~-~---~~~~~~DvVf~a~~~~~s 114 (376)
..+|.|.||+|-+|.-.++++... ..++.++.++...-+.....+.+..+...+ . ....++|+||.|.|....
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~---G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~~~~ 104 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAM---GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKEVE 104 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHT---TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCTTHH
T ss_pred CCEEEEEeccccchhhhhhhhccc---ccccccccccccccccccccccceeeehhhhhhhhhccccccccccccchhHH
Confidence 368999999999999999988775 356666554322111111112222222111 1 123578999999874322
Q ss_pred hhhHHHHHhCCCeEEEc
Q 017153 115 KKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 115 ~~~~~~~~~~G~~VIDl 131 (376)
.. -.++..|.++|..
T Consensus 105 -~~-~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 105 -ES-LGLLAHGGRLVYI 119 (171)
T ss_dssp -HH-HTTEEEEEEEEEC
T ss_pred -HH-HHHHhcCCcEEEE
Confidence 11 1223345555544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=87.71 E-value=0.097 Score=43.15 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=51.2
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc--c-------C---CCCCcEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE--D-------S---FDGVDIALF 107 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~--~-------~---~~~~DvVf~ 107 (376)
-+|.|+|| |-+|...++++... ..-++.++......-+.....+.+..+...+. . + -.++|+||+
T Consensus 30 ~~VlV~Ga-G~iG~~~~~~ak~~--Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid 106 (182)
T d1vj0a2 30 KTVVIQGA-GPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE 106 (182)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred CEEEEECC-Cccchhheeccccc--ccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence 68999998 99999999888765 22255544322110000001122222221111 0 0 136899999
Q ss_pred cCCCchhhhhHHHHHhCCCeEEEcC
Q 017153 108 SAGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
|++...+.+.+-.++..|.+++-..
T Consensus 107 ~vG~~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 107 ATGDSRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp CSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred cCCchhHHHHHHHHhcCCCEEEEEe
Confidence 9998776666666666777766443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=87.64 E-value=0.45 Score=38.97 Aligned_cols=90 Identities=18% Similarity=0.066 Sum_probs=49.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecCcc-C---------CCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTED-S---------FDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~~-~---------~~~~DvVf~ 107 (376)
.-+|.|+|+ |-+|...+..+... ..-.++ +.+.+..-..+.. .+.+..+.....+ . -.++|+||+
T Consensus 29 G~~VlV~G~-G~iGl~a~~~ak~~--Ga~~Vi-~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie 104 (174)
T d1e3ia2 29 GSTCAVFGL-GCVGLSAIIGCKIA--GASRII-AIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD 104 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT--TCSEEE-EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CCEEEEECC-ChHHHHHHHHHHHh--CCceee-eeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence 368999998 99999999888765 223443 3332221111111 1122222211111 1 147999999
Q ss_pred cCCCchhhhhHHHHHhCC-CeEEEcC
Q 017153 108 SAGGSISKKFGPIAVEKG-SIVVDNS 132 (376)
Q Consensus 108 a~~~~~s~~~~~~~~~~G-~~VIDlS 132 (376)
|+|...+.+.+-+.+..| -+++-..
T Consensus 105 ~~G~~~~~~~a~~~~~~g~G~~v~vG 130 (174)
T d1e3ia2 105 CAGTAQTLKAAVDCTVLGWGSCTVVG 130 (174)
T ss_dssp SSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred ecccchHHHHHHHHhhcCCeEEEecC
Confidence 999987766665555443 3444343
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.11 Score=42.58 Aligned_cols=90 Identities=17% Similarity=0.078 Sum_probs=51.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCcc---C------CCCCcEEEEcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED---S------FDGVDIALFSA 109 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~---~------~~~~DvVf~a~ 109 (376)
.-+|.|.||+|-+|...+++.... ..++.++.++...-+.....+.+..+..-+.+ . -.++|+||+|.
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~---G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~ 105 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAY---GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 105 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CCEEEEEecccccccccccccccc---CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeecc
Confidence 368999999999999999988775 45776665432111111111222222211111 1 14689999998
Q ss_pred CCchhhhhHHHHHhCCCeEEEcC
Q 017153 110 GGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 110 ~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
+.... +..-.+++.|.++|...
T Consensus 106 g~~~~-~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 106 ANVNL-SKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HHHHH-HHHHHHEEEEEEEEECC
T ss_pred cHHHH-HHHHhccCCCCEEEEEe
Confidence 85433 33333445566777654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.49 E-value=0.36 Score=43.17 Aligned_cols=39 Identities=18% Similarity=0.420 Sum_probs=28.7
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG 79 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g 79 (376)
+.||+|||| |..|...+..|++.+ ...+++++-..+..|
T Consensus 4 ~KrVaIIGa-G~sGl~~A~~L~~~~-~~~~v~vfEk~~~iG 42 (335)
T d2gv8a1 4 IRKIAIIGA-GPSGLVTAKALLAEK-AFDQVTLFERRGSPG 42 (335)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTT-CCSEEEEECSSSSSS
T ss_pred CCeEEEECc-CHHHHHHHHHHHHhC-CCCCEEEEECCCCCC
Confidence 478999999 999999998776652 235777776554444
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.28 E-value=0.27 Score=44.18 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=23.7
Q ss_pred EEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 42 VaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
|-|.|||||+|+.|++.|++++| ++.++
T Consensus 4 ILVTGatGfIG~~lv~~Ll~~g~---~V~~~ 31 (347)
T d1z45a2 4 VLVTGGAGYIGSHTVVELIENGY---DCVVA 31 (347)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTC---EEEEE
T ss_pred EEEeCCCcHHHHHHHHHHHHCcC---eEEEE
Confidence 88999999999999999988743 66655
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.97 E-value=0.13 Score=42.86 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=40.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s 114 (376)
..+++|+|. |.+|+++.+.+..- ..++.+.. +... +... .........+ .+.+..+|+|++++|-...
T Consensus 44 ~k~vgiiG~-G~IG~~va~~~~~f---g~~v~~~d-~~~~-~~~~-~~~~~~~~~l-~ell~~sDiv~~~~Plt~~ 111 (184)
T d1ygya1 44 GKTVGVVGL-GRIGQLVAQRIAAF---GAYVVAYD-PYVS-PARA-AQLGIELLSL-DDLLARADFISVHLPKTPE 111 (184)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEEC-TTSC-HHHH-HHHTCEECCH-HHHHHHCSEEEECCCCSTT
T ss_pred ceeeeeccc-cchhHHHHHHhhhc---cceEEeec-CCCC-hhHH-hhcCceeccH-HHHHhhCCEEEEcCCCCch
Confidence 479999998 99999999998753 45665443 2211 1000 0011222222 2235789999999886543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.63 E-value=0.28 Score=39.85 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFP 65 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p 65 (376)
+.||+|||| |.+|.+.+..|.++++.
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~ 29 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYS 29 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCC
Confidence 479999999 99999999999987553
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.61 E-value=0.4 Score=40.83 Aligned_cols=37 Identities=16% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA 78 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~ 78 (376)
++.||+|||| |..|......|.+++ .++.++-.++..
T Consensus 4 ~~~kViVIGa-G~aGL~aA~~L~~~G---~~V~VlEa~~r~ 40 (449)
T d2dw4a2 4 KTGKVIIIGS-GVSGLAAARQLQSFG---MDVTLLEARDRV 40 (449)
T ss_dssp CCCEEEEECC-BHHHHHHHHHHHHTT---CEEEEECSSSSS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCC---CCEEEEeCCCCC
Confidence 4679999999 999999999999874 477767544333
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.22 E-value=0.67 Score=37.40 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=46.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC----------CCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS----------FDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~----------~~~~DvVf~a 108 (376)
.-.|.|+|+ |-+|...+.++... ...++.++.+....-+.....+.+..+...+.++ -.++|++|+|
T Consensus 29 GdtVlV~Ga-GG~G~~~~~~~~~~--g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 29 GSTCAVFGL-GGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCEEEEECC-CCcHHHHHHHHHHc--CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 368999999 55788888877765 3445555543222111111111122222111111 1479999999
Q ss_pred CCCchhhhhHHHHHhCC
Q 017153 109 AGGSISKKFGPIAVEKG 125 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G 125 (376)
.+...+.+.+-..+..|
T Consensus 106 ~G~~~~~~~a~~~~~~~ 122 (176)
T d2jhfa2 106 IGRLDTMVTALSCCQEA 122 (176)
T ss_dssp SCCHHHHHHHHHHBCTT
T ss_pred CCchhHHHHHHHHHhcC
Confidence 99987766665555554
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=86.12 E-value=0.53 Score=36.13 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=25.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..||.|+|+ |++|.|++..|.+. ..++..+.
T Consensus 30 ~~~vvIIGg-G~iG~E~A~~l~~~---g~~Vtli~ 60 (121)
T d1d7ya2 30 QSRLLIVGG-GVIGLELAATARTA---GVHVSLVE 60 (121)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCeEEEECc-chhHHHHHHHhhcc---cceEEEEe
Confidence 479999999 99999999999875 45666554
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=86.00 E-value=1.2 Score=38.97 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=58.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCC-----CCCceeee------------c--Ccc----eEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----SAGKQLSF------------Q--DKA----YTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~-----~~g~~~~~------------~--~~~----~~v~~~~ 95 (376)
..+|+|=|+ |.||..+++.|.+. ..+++++.+.+ ..|-.+.. . ..+ ...+.++
T Consensus 36 g~~v~IQGf-GnVG~~~a~~L~e~---GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (255)
T d1bgva1 36 GKTVALAGF-GNVAWGAAKKLAEL---GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP 111 (255)
T ss_dssp TCEEEECCS-SHHHHHHHHHHHHH---TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc---CCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeec
Confidence 479999998 99999999999985 46888776431 11211100 0 000 0011112
Q ss_pred ccC-C-CCCcEEEEc-CCCchhhhhHHHHHhCCCeEEEcCC
Q 017153 96 EDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVDNSS 133 (376)
Q Consensus 96 ~~~-~-~~~DvVf~a-~~~~~s~~~~~~~~~~G~~VIDlS~ 133 (376)
.++ | .+|||.|-| ++...+.+.++++.+.||++|-=.+
T Consensus 112 ~~~~~~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgA 152 (255)
T d1bgva1 112 GEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVA 152 (255)
T ss_dssp TCCGGGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCS
T ss_pred hhhcccccccEEeeccccccccHHHHHhhhhcCceEEecCC
Confidence 222 4 589998876 5677888999999999999884333
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=85.82 E-value=0.13 Score=42.18 Aligned_cols=89 Identities=24% Similarity=0.158 Sum_probs=50.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-ee-eecCcceEEeecCcc------CC--CCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QL-SFQDKAYTVEELTED------SF--DGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-~~-~~~~~~~~v~~~~~~------~~--~~~DvVf~a 108 (376)
.-+|.|+|+ |-+|...+.++... ....+. +.+.+. .+ .. ...+.+..+..-+++ ++ .++|+||+|
T Consensus 29 g~~VlI~G~-G~iG~~~~~~ak~~--g~~~v~-~~~~~~-~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~ 103 (174)
T d1f8fa2 29 ASSFVTWGA-GAVGLSALLAAKVC--GASIII-AVDIVE-SRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALES 103 (174)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHH--TCSEEE-EEESCH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCEEEEeCC-CHHHhhhhhccccc--ccceee-eeccHH-HHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEc
Confidence 468999998 99999999887665 333333 333221 11 00 001112222211111 11 368999999
Q ss_pred CCCchhhhhHHHHHhCCCeEEEcC
Q 017153 109 AGGSISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G~~VIDlS 132 (376)
++...+.+.+-+++..|.+++-.+
T Consensus 104 ~G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 104 TGSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp SCCHHHHHHHHHTEEEEEEEEECC
T ss_pred CCcHHHHHHHHhcccCceEEEEEe
Confidence 999877777666666666666443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.76 E-value=0.27 Score=41.16 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.7
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
++-.||+|+|| |.+|+.+..+++.++| ++..+
T Consensus 2 ~~IkkvaViGa-G~mG~~iA~~~a~~G~---~V~l~ 33 (192)
T d1f0ya2 2 IIVKHVTVIGG-GLMGAGIAQVAAATGH---TVVLV 33 (192)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTC---EEEEE
T ss_pred ceeEEEEEECc-CHHHHHHHHHHHhCCC---cEEEE
Confidence 44579999999 9999999999988744 55544
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.51 E-value=0.66 Score=35.60 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.||.|+|+ |++|.|+...|.+. ..++..+.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~---G~~Vtlv~ 52 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSAL---GSKTSLMI 52 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC
T ss_pred CCEEEEEcC-CccHHHHHHHHhcC---CcEEEEEe
Confidence 369999999 99999999999875 44666554
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.24 E-value=0.56 Score=38.61 Aligned_cols=114 Identities=13% Similarity=0.257 Sum_probs=64.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCc-----eeeecCcc-eEEeecCccC----CCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----QLSFQDKA-YTVEELTEDS----FDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~-----~~~~~~~~-~~v~~~~~~~----~~~~DvVf~a 108 (376)
..+|.|+|.+..+|+=|..+|+++ ...+....+. .... .+...... -.+.....+. ...+|+|+.|
T Consensus 29 GK~vvVIGrS~iVG~Pla~lL~~~---gaTVt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsa 104 (171)
T d1edza1 29 GKKCIVINRSEIVGRPLAALLAND---GATVYSVDVN-NIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 104 (171)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTT---SCEEEEECSS-EEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred CCEEEEECCccccHHHHHHHHHHC---CCEEEEeccc-cccccccccceeeeeeccccccccchhHHhhccccCCEEEEc
Confidence 489999999999999999999886 4455433221 1100 00000000 0111112211 2368999999
Q ss_pred CCCc---hhhhhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCC-cEEEcCCchHHHHHH
Q 017153 109 AGGS---ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG-ALIANPNCSTIICLM 178 (376)
Q Consensus 109 ~~~~---~s~~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~-~iVa~PgC~~ta~~l 178 (376)
.|.. ...++ .+.|+.|||.+-. |-. .+.++. .+ .+...||-.|.++++
T Consensus 105 vG~p~~~i~~d~----ik~GavvIDvGi~-~~~-----------~~~v~~------~a~~iTPVPGGVTvamLl 156 (171)
T d1edza1 105 VPSENYKFPTEY----IKEGAVCINFACT-KNF-----------SDDVKE------KASLYVPMTGKVTIAMLL 156 (171)
T ss_dssp CCCTTCCBCTTT----SCTTEEEEECSSS-CCB-----------CGGGGT------TEEEEESCCHHHHHHHHH
T ss_pred cCCCccccChhh----cccCceEeecccc-ccc-----------ccchhh------eeeEEcCCCCHHHHHHHH
Confidence 9873 33444 4569999998753 211 122332 33 355588887666655
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=85.22 E-value=0.21 Score=41.94 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=39.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCc-cCCCCCcEEEEcCCCch
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSI 113 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~-~~~~~~DvVf~a~~~~~ 113 (376)
..+|||+|. |.+|+++.+++..- .+++.+...... ...... ........+. +.+..+|+|..++|-..
T Consensus 47 g~tvgIiG~-G~IG~~va~~l~~f---g~~v~~~d~~~~-~~~~~~--~~~~~~~~~l~~ll~~sD~v~l~~plt~ 115 (191)
T d1gdha1 47 NKTLGIYGF-GSIGQALAKRAQGF---DMDIDYFDTHRA-SSSDEA--SYQATFHDSLDSLLSVSQFFSLNAPSTP 115 (191)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTT---TCEEEEECSSCC-CHHHHH--HHTCEECSSHHHHHHHCSEEEECCCCCT
T ss_pred ccceEEeec-ccchHHHHHHHHhh---cccccccccccc-ccchhh--cccccccCCHHHHHhhCCeEEecCCCCc
Confidence 489999999 99999999999764 456654432211 111000 0001111112 23468899999988753
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=85.20 E-value=0.49 Score=35.37 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDR 62 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~ 62 (376)
.+||+|+|+ |..|.+++..|+..
T Consensus 32 gK~VlVVG~-g~Sa~dia~~l~~~ 54 (107)
T d2gv8a2 32 GESVLVVGG-ASSANDLVRHLTPV 54 (107)
T ss_dssp TCCEEEECS-SHHHHHHHHHHTTT
T ss_pred CCeEEEECC-CCCHHHHHHHHHHh
Confidence 379999998 99999999998764
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=84.99 E-value=0.49 Score=36.63 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..+.++.|+|+ |++|.|+...+... ..++..+.
T Consensus 24 ~~p~~vvIiGg-G~IG~E~A~~~~~~---G~~Vtive 56 (125)
T d1ojta2 24 EVPGKLLIIGG-GIIGLEMGTVYSTL---GSRLDVVE 56 (125)
T ss_dssp CCCSEEEEESC-SHHHHHHHHHHHHH---TCEEEEEC
T ss_pred ccCCeEEEECC-CHHHHHHHHHhhcC---CCEEEEEE
Confidence 34579999999 99999999999875 45666664
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=84.79 E-value=0.49 Score=40.71 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=29.2
Q ss_pred CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC
Q 017153 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA 78 (376)
Q Consensus 37 ~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~ 78 (376)
.++.||+|||| |..|......|.+++ .++.++-..+..
T Consensus 28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G---~~V~vlE~~~~~ 65 (370)
T d2iida1 28 SNPKHVVIVGA-GMAGLSAAYVLAGAG---HQVTVLEASERP 65 (370)
T ss_dssp SSCCEEEEECC-BHHHHHHHHHHHHHT---CEEEEECSSSSS
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHHCC---CCEEEEeCCCCC
Confidence 34579999999 999999999999874 477767543333
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.72 E-value=0.16 Score=46.10 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC-ceeee--cCcceEEeecCccCCCCCcEEEEcCCCchhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g-~~~~~--~~~~~~v~~~~~~~~~~~DvVf~a~~~~~s~ 115 (376)
..+++|+|+ |..++.-++.|... +|.-++ .+.+++... +.+.. ....+.+.....+...++|||++||++..--
T Consensus 125 ~~~l~iiGa-G~QA~~~~~al~~~-~~i~~i-~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~ 201 (320)
T d1omoa_ 125 SSVFGFIGC-GTQAYFQLEALRRV-FDIGEV-KAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPV 201 (320)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH-SCCCEE-EEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCC
T ss_pred ccEEEEecC-cccHHHHHHHHHHH-hhhhhc-ccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcccc
Confidence 578999997 99999999988653 364444 455543211 11110 1112222222233457899999999875331
Q ss_pred hhHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhc
Q 017153 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (376)
Q Consensus 116 ~~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~ 154 (376)
+-...++.|..|+-.+++- . + ..|+..+.++
T Consensus 202 -~~~~~l~~G~hv~~iGs~~-p--~----~~Eld~~~~~ 232 (320)
T d1omoa_ 202 -VKAEWVEEGTHINAIGADG-P--G----KQELDVEILK 232 (320)
T ss_dssp -BCGGGCCTTCEEEECSCCS-T--T----CCCBCHHHHH
T ss_pred -cchhhcCCCCeEeecCCcc-c--c----ccccCHHHhh
Confidence 1123356788888766642 1 1 1356666666
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=84.63 E-value=0.74 Score=34.81 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=24.4
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.||.|+|+ |++|.|+...|.+.+ .++..+.
T Consensus 22 ~~vvIiGg-G~ig~E~A~~l~~~G---~~Vtlve 51 (116)
T d1gesa2 22 ERVAVVGA-GYIGVELGGVINGLG---AKTHLFE 51 (116)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTT---CEEEEEC
T ss_pred CEEEEECC-ChhhHHHHHHhhccc---cEEEEEe
Confidence 68999999 999999999998763 4665553
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=84.28 E-value=0.44 Score=39.78 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
+-||-|+|+ |-+|..-++..... ...+.++
T Consensus 29 pa~VvViGa-GvaG~~Aa~~A~~l---GA~V~v~ 58 (183)
T d1l7da1 29 PARVLVFGV-GVAGLQAIATAKRL---GAVVMAT 58 (183)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT---TCEEEEE
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHc---CCEEEEE
Confidence 469999999 99999999977664 3455544
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.02 E-value=1.1 Score=42.02 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=56.3
Q ss_pred cCCCCCCCceeeeccCCC--CCCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC----C-----------CCCce
Q 017153 19 ANKPRTKPMFTRVRMSYQ--ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----R-----------SAGKQ 81 (376)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~--~~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~----~-----------~~g~~ 81 (376)
.+.|.+.|-|+.-.-.++ -+..||.|+|+ |-+|.++++.|...+.. ++..+-.. + ..|+.
T Consensus 15 r~~~~~~~~~~~~~e~~~~~l~~~kVlvvG~-GglG~ei~k~L~~~Gvg--~i~lvD~D~Ve~sNL~RQflf~~~diG~~ 91 (426)
T d1yovb1 15 RSGPFTHPDFEPSTESLQFLLDTCKVLVIGA-GGLGCELLKNLALSGFR--QIHVIDMDTIDVSNLNRQFLFRPKDIGRP 91 (426)
T ss_dssp SCCTTCCTTCCCCSSHHHHHHHHCCEEEECS-STTHHHHHHHHHTTTCC--CEEEECCCBCCGGGGGTCTTCCGGGTTSB
T ss_pred cCCCCcCcccccChHHHHHHHhcCeEEEECC-CHHHHHHHHHHHHcCCC--eEEEEECCCcchhhhcccccCChhHcCcH
Confidence 345566666653210000 01468999999 77999999999887444 34333211 1 11221
Q ss_pred eee--------cCcceEEe--ecC-----ccCCCCCcEEEEcCCCchhhhhHHHHH
Q 017153 82 LSF--------QDKAYTVE--ELT-----EDSFDGVDIALFSAGGSISKKFGPIAV 122 (376)
Q Consensus 82 ~~~--------~~~~~~v~--~~~-----~~~~~~~DvVf~a~~~~~s~~~~~~~~ 122 (376)
-.. ....+.+. ... .+.+.++|+||+|++...++.+..+..
T Consensus 92 Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c 147 (426)
T d1yovb1 92 KAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGML 147 (426)
T ss_dssp HHHHHHHHHHHHSTTCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence 110 01112222 111 112478999999999999988887664
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=83.81 E-value=0.85 Score=34.86 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=25.0
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..||.|+|+ |++|.|++..|.+. ..++..+-
T Consensus 30 ~k~vvViGg-G~iG~E~A~~l~~~---g~~Vtlie 60 (123)
T d1nhpa2 30 VNNVVVIGS-GYIGIEAAEAFAKA---GKKVTVID 60 (123)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEE
T ss_pred CCEEEEECC-hHHHHHHHHHhhcc---ceEEEEEE
Confidence 469999999 99999999999885 34665553
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=83.81 E-value=0.2 Score=40.76 Aligned_cols=90 Identities=19% Similarity=0.197 Sum_probs=49.6
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeec-C-cc------CCCCCcEEEEcCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-T-ED------SFDGVDIALFSAGG 111 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~-~-~~------~~~~~DvVf~a~~~ 111 (376)
-+|.|+|+ |.+|...+.++... ....++.+.+....-+.....+.+..+... + .+ ...++|+||+|++.
T Consensus 34 ~~vli~Ga-G~vG~~~~~~a~~~--g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~ 110 (172)
T d1h2ba2 34 AYVAIVGV-GGLGHIAVQLLKVM--TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS 110 (172)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred CEEEEeCC-ChHHHHHHHHHHhh--cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence 57999998 99999988887654 223444333221100000011122222211 1 01 12479999999998
Q ss_pred chhhhhHHHHHhCCCeEEEcC
Q 017153 112 SISKKFGPIAVEKGSIVVDNS 132 (376)
Q Consensus 112 ~~s~~~~~~~~~~G~~VIDlS 132 (376)
..+.+..-.++..|.+++-..
T Consensus 111 ~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 111 QATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HHHHHHGGGGEEEEEEEEECC
T ss_pred chHHHHHHHHHhCCCEEEEEe
Confidence 876665555556666666443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.81 E-value=0.29 Score=40.46 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=53.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEe-e-cCccC-----CCCCcEEEEcCCCc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-E-LTEDS-----FDGVDIALFSAGGS 112 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~-~-~~~~~-----~~~~DvVf~a~~~~ 112 (376)
-+|.|.||+|-||.-.+++.... ..++.+.+++...-......+.+..+. . ...+. -.++|+||++.+..
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~---Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~ 109 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKR---GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR 109 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHT---TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT
T ss_pred CEEEEEeccchHHHHHHHHHHHc---CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch
Confidence 57999999999999999988764 566766655332211111122222221 1 11111 14799999999876
Q ss_pred hhhhhHHHHHhCCCeEEEcCCC
Q 017153 113 ISKKFGPIAVEKGSIVVDNSSA 134 (376)
Q Consensus 113 ~s~~~~~~~~~~G~~VIDlS~~ 134 (376)
.-..... .+..|.+++.+...
T Consensus 110 ~~~~~l~-~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 110 TLATVLS-RMRYGGAVAVSGLT 130 (176)
T ss_dssp THHHHHH-TEEEEEEEEECSCC
T ss_pred hHHHHHH-HhCCCceEEEeecc
Confidence 5444333 34557778777654
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.51 E-value=0.99 Score=34.04 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=23.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+.|++|+|+ |++|.|+...|...+....++..+.
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~ 53 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCY 53 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEe
Confidence 369999999 9999999976654321334554443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=83.50 E-value=0.58 Score=38.38 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=65.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCCCCCcEEEEcCCC--chhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGG--SISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~~~~DvVf~a~~~--~~s~~ 116 (376)
..+|.|+|.+..+|+-|..+|.++ ...+...-+ +.. ++ .+...++|+|+.|.|. ....+
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~~---gatVt~~h~-~t~---------~l------~~~~~~ADivI~a~G~p~~i~~~ 97 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLLA---GCTTTVTHR-FTK---------NL------RHHVENADLLIVAVGKPGFIPGD 97 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTT---TCEEEEECS-SCS---------CH------HHHHHHCSEEEECSCCTTCBCTT
T ss_pred cceEEEEeccccccHHHHHHHHHh---hcccccccc-ccc---------hh------HHHHhhhhHhhhhccCccccccc
Confidence 489999999999999999999875 345443322 110 01 1123578999999865 33333
Q ss_pred hHHHHHhCCCeEEEcCCCCCCCCCCcEEeeccCHHhhcCcccCCCCCcEEEcCCch---HHHHHH
Q 017153 117 FGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS---TIICLM 178 (376)
Q Consensus 117 ~~~~~~~~G~~VIDlS~~~R~~~~~~~~lpevN~~~i~~~~~~~~~~~iVa~PgC~---~ta~~l 178 (376)
+ .+.|+.|||..-. |.++. -.+-+++.+.++.. ...+...||-. |+++++
T Consensus 98 ~----vk~g~vvIDvGi~-~~~~~--~~~Gdvd~~~v~~~-----a~~~TPvPGGVGP~Tva~L~ 150 (166)
T d1b0aa1 98 W----IKEGAIVIDVGIN-RLENG--KVVGDVVFEDAAKR-----ASYITPVPGGVGPMTVATLI 150 (166)
T ss_dssp T----SCTTCEEEECCCE-ECTTS--CEECSBCHHHHHHH-----CSEECCSSSSSHHHHHHHHH
T ss_pred c----cCCCcEEEecCce-ecCCC--CEEeccccHhHHhh-----eeEeCCCCCcccHHHHHHHH
Confidence 3 4679999998653 33332 24456666666531 23344566633 444443
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=83.48 E-value=0.59 Score=40.11 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecC---------------CCCCceeee--------cCcceEEeecC
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVEELT 95 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~---------------~~~g~~~~~--------~~~~~~v~~~~ 95 (376)
..||.|+|+ |-+|.+++..|...+ .-++..+-.. +..|++-.. ...++.+...+
T Consensus 30 ~~~VliiG~-GglGs~va~~La~~G--vg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~ 106 (247)
T d1jw9b_ 30 DSRVLIVGL-GGLGCAASQYLASAG--VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN 106 (247)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHT--CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcC--CCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence 469999999 999999999998873 3455544211 112221110 01223333222
Q ss_pred c----c----CCCCCcEEEEcCCCchhhhhHHHHH-hCCCeEEEcC
Q 017153 96 E----D----SFDGVDIALFSAGGSISKKFGPIAV-EKGSIVVDNS 132 (376)
Q Consensus 96 ~----~----~~~~~DvVf~a~~~~~s~~~~~~~~-~~G~~VIDlS 132 (376)
. + .+...|++++|++...++.+..++. +.+..+|..+
T Consensus 107 ~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~ 152 (247)
T d1jw9b_ 107 ALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGA 152 (247)
T ss_dssp SCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred hhhhhccccccccccceeeeccchhhhhhhHHHHHHHhCCCccccc
Confidence 1 1 1257899999999988877776654 6688888643
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=83.13 E-value=0.38 Score=39.04 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=35.7
Q ss_pred CEEEEECcccHHHHHHH-H-HHhcC-CCCCeEEEEEecCCCCCceeee-----cCcceEE--eecCccCCCCCcEEEEcC
Q 017153 40 PSVAVVGVTGAVGQEFL-S-VLSDR-DFPYRSIKMLASKRSAGKQLSF-----QDKAYTV--EELTEDSFDGVDIALFSA 109 (376)
Q Consensus 40 irVaIvGaTG~vG~eLl-r-~L~~~-~~p~~~l~~v~s~~~~g~~~~~-----~~~~~~v--~~~~~~~~~~~DvVf~a~ 109 (376)
|||+|+|| |-+|..++ . ++... .++.-|++.+--.....+.... ......+ ..-+.+++.++|+|+.+.
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita 79 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQF 79 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEec
Confidence 78999999 75554433 2 22222 2244577765321111000000 0112222 221234568999999998
Q ss_pred CCch
Q 017153 110 GGSI 113 (376)
Q Consensus 110 ~~~~ 113 (376)
+..-
T Consensus 80 ~~~~ 83 (162)
T d1up7a1 80 RPGG 83 (162)
T ss_dssp CTTH
T ss_pred ccCC
Confidence 7654
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=83.05 E-value=1 Score=37.30 Aligned_cols=31 Identities=29% Similarity=0.568 Sum_probs=25.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..||.|||| |.+|......|.++++ ++.++-
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G~---~V~vie 36 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKGY---SVHILA 36 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTC---EEEEEE
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCCC---CEEEEe
Confidence 469999999 9999999999998744 665554
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=82.87 E-value=0.77 Score=38.39 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=28.0
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG 79 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g 79 (376)
+||+|||| |..|......|.+. .+++.++-.....|
T Consensus 2 KkV~IIGa-G~aGL~aA~~La~~---G~~V~vlE~~~~~G 37 (373)
T d1seza1 2 KRVAVIGA-GVSGLAAAYKLKIH---GLNVTVFEAEGKAG 37 (373)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTT---SCEEEEECSSSSSC
T ss_pred CEEEEECc-CHHHHHHHHHHHhC---CCCEEEEeCCCCCc
Confidence 68999999 99999999999886 45777775443333
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=82.77 E-value=0.59 Score=39.42 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=49.3
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeee-cCcceEEeecCccC-C-CCCcEEEE-cCCCchh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTEDS-F-DGVDIALF-SAGGSIS 114 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~-~~~~~~v~~~~~~~-~-~~~DvVf~-a~~~~~s 114 (376)
..+|+|-|. |.||..+.+.|.+. ..++++ .+.+ .+ .+.. ....... .+.++ | .+|||.+- |++....
T Consensus 27 gk~v~IqG~-G~VG~~~A~~L~~~---Gakvvv-~d~d-~~-~~~~~~~~g~~~--~~~~~~~~~~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 27 GLTVLVQGL-GAVGGSLASLAAEA---GAQLLV-ADTD-TE-RVAHAVALGHTA--VALEDVLSTPCDVFAPCAMGGVIT 97 (201)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEE-ECSC-HH-HHHHHHHTTCEE--CCGGGGGGCCCSEEEECSCSCCBC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC---CCEEEE-ecch-HH-HHHHHHhhcccc--cCccccccccceeeeccccccccc
Confidence 379999998 99999999999986 456653 3221 11 1110 0001112 22333 4 58999884 5677777
Q ss_pred hhhHHHHHhCCCeEEE
Q 017153 115 KKFGPIAVEKGSIVVD 130 (376)
Q Consensus 115 ~~~~~~~~~~G~~VID 130 (376)
.+.++++ .|++|-
T Consensus 98 ~~~a~~i---~ak~i~ 110 (201)
T d1c1da1 98 TEVARTL---DCSVVA 110 (201)
T ss_dssp HHHHHHC---CCSEEC
T ss_pred HHHHhhh---hhheee
Confidence 7777654 678873
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=82.64 E-value=2.1 Score=32.85 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=62.9
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC--CCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~--~~~DvVf~a~~~~~s~~ 116 (376)
.-||.|-|.||.-|.--.+...+. .-++++-.++...|+.+ ..+++.+.-.+.. .++|.-+.-.|...+.+
T Consensus 6 ~trVlvQGiTG~~G~~ht~~m~~y---GT~vVaGVtPgkgG~~~----~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~d 78 (119)
T d2nu7a1 6 NTKVICQGFTGSQGTFHSEQAIAY---GTKMVGGVTPGKGGTTH----LGLPVFNTVREAVAATGATASVIYVPAPFCKD 78 (119)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCTTEEE----TTEEEESSHHHHHHHHCCCEEEECCCGGGHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHh---CCceEEEEccCCCCccc----CCCchhhHHHHHHHHhCCCeEEEeccHHHHHH
Confidence 468999999999999888877764 44788777777777654 2466654322222 36788888888888888
Q ss_pred hHHHHHhCCCeEEE
Q 017153 117 FGPIAVEKGSIVVD 130 (376)
Q Consensus 117 ~~~~~~~~G~~VID 130 (376)
.+-++.++|++.|-
T Consensus 79 A~~EAi~agI~~iV 92 (119)
T d2nu7a1 79 SILEAIDAGIKLII 92 (119)
T ss_dssp HHHHHHHTTCSEEE
T ss_pred HHHHHHHCCCCEEE
Confidence 88888899998664
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.53 E-value=0.091 Score=43.74 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=46.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecCcc--------CCCCCcEEEEcCC
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTED--------SFDGVDIALFSAG 110 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~~~--------~~~~~DvVf~a~~ 110 (376)
-.|.|.||+|-||.-.+++.... ..-.+..+.+++..-..+. ..+.+..+...+++ .-.++|+||+|.+
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~--Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLL--GCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHT--TCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CEEEEECCCchhhHHHHHHHHHc--CCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 57999999999999999987654 2234444443221111111 11222222211110 1147999999998
Q ss_pred CchhhhhHHHHHhCCCeEEEc
Q 017153 111 GSISKKFGPIAVEKGSIVVDN 131 (376)
Q Consensus 111 ~~~s~~~~~~~~~~G~~VIDl 131 (376)
......... .+..|.+++..
T Consensus 110 g~~~~~~~~-~l~~~G~iv~~ 129 (187)
T d1vj1a2 110 GDISNTVIS-QMNENSHIILC 129 (187)
T ss_dssp HHHHHHHHT-TEEEEEEEEEC
T ss_pred chhHHHHhh-hccccccEEEe
Confidence 644333222 23345555543
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.43 E-value=0.63 Score=37.95 Aligned_cols=76 Identities=9% Similarity=0.092 Sum_probs=40.6
Q ss_pred CCEEEEECccc--HHHHHHHHHHhcC-CCCCeEEEEEecCCC--CCceeee--------cCcceEEeec-C-ccCCCCCc
Q 017153 39 APSVAVVGVTG--AVGQEFLSVLSDR-DFPYRSIKMLASKRS--AGKQLSF--------QDKAYTVEEL-T-EDSFDGVD 103 (376)
Q Consensus 39 ~irVaIvGaTG--~vG~eLlr~L~~~-~~p~~~l~~v~s~~~--~g~~~~~--------~~~~~~v~~~-~-~~~~~~~D 103 (376)
+|||+|+|| | +++..+..++... .++..+++.+--... .++.+.. ...+..+... | .+.+.++|
T Consensus 1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaD 79 (169)
T d1s6ya1 1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGAD 79 (169)
T ss_dssp CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCC
Confidence 489999998 6 4556666666554 122346665432111 1111110 1123344322 2 23468999
Q ss_pred EEEEcCCCchhh
Q 017153 104 IALFSAGGSISK 115 (376)
Q Consensus 104 vVf~a~~~~~s~ 115 (376)
+|+.+.+..-..
T Consensus 80 vVv~ta~~~~~~ 91 (169)
T d1s6ya1 80 FVTTQFRVGGLE 91 (169)
T ss_dssp EEEECCCTTHHH
T ss_pred EEEEccccCCCC
Confidence 999998776543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=82.40 E-value=0.38 Score=39.15 Aligned_cols=89 Identities=21% Similarity=0.306 Sum_probs=48.5
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCC-Cceeee-cC-----cceEEeecCcc----CCCCCcEEEEc
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF-QD-----KAYTVEELTED----SFDGVDIALFS 108 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~-g~~~~~-~~-----~~~~v~~~~~~----~~~~~DvVf~a 108 (376)
|||||||. |..|..+++.|.+++| ++. +.++... -+.+.. +. ....... +.+ .....+.++.+
T Consensus 2 MkIGvIGl-G~MG~~ma~~L~~~G~---~V~-~~dr~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 2 MDVGVVGL-GVMGANLALNIAEKGF---KVA-VFNRTYSKSEEFMKANASAPFAGNLKAFE-TMEAFAASLKKPRKALIL 75 (178)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTC---CEE-EECSSHHHHHHHHHHTTTSTTGGGEEECS-CHHHHHHHBCSSCEEEEC
T ss_pred CEEEEEee-hHHHHHHHHHHHHCCC---eEE-EEECCHHHHHHHHHcCCccccccchhhhh-hhhHHHHhcccceEEEEe
Confidence 78999998 9999999999998755 443 3343211 001100 00 0111111 111 13466777777
Q ss_pred CCCchhh-hhHH---HHHhCCCeEEEcCCC
Q 017153 109 AGGSISK-KFGP---IAVEKGSIVVDNSSA 134 (376)
Q Consensus 109 ~~~~~s~-~~~~---~~~~~G~~VIDlS~~ 134 (376)
++..... .... .....|..+||.|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~iii~~st~ 105 (178)
T d1pgja2 76 VQAGAATDSTIEQLKKVFEKGDILVDTGNA 105 (178)
T ss_dssp CCCSHHHHHHHHHHHHHCCTTCEEEECCCC
T ss_pred ecCcchhhhhhhhhhhhccccceecccCcc
Confidence 7665433 2222 233567788888765
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=82.04 E-value=0.71 Score=35.35 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=25.7
Q ss_pred CCCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 38 ~~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
.+.++.|+|+ |++|.|+...+... ..++..+.
T Consensus 24 ~p~~~viiG~-G~iglE~A~~~~~~---G~~Vtvi~ 55 (123)
T d1dxla2 24 IPKKLVVIGA-GYIGLEMGSVWGRI---GSEVTVVE 55 (123)
T ss_dssp CCSEEEESCC-SHHHHHHHHHHHHH---TCEEEEEC
T ss_pred cCCeEEEEcc-chHHHHHHHHHHhc---CCeEEEEE
Confidence 3479999999 99999999999875 35666553
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=81.75 E-value=0.79 Score=35.61 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
..||.|+|+ |++|.|+...|.+. ..++..+.
T Consensus 35 ~k~v~VIGg-G~iG~E~A~~l~~~---g~~Vtvie 65 (133)
T d1q1ra2 35 DNRLVVIGG-GYIGLEVAATAIKA---NMHVTLLD 65 (133)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT---TCEEEEEC
T ss_pred CCEEEEECC-chHHHHHHHHHHhh---Ccceeeee
Confidence 479999999 99999999999875 45666554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.28 E-value=0.99 Score=36.60 Aligned_cols=80 Identities=18% Similarity=0.085 Sum_probs=44.4
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceee-ecCcceEEeecCccC----------CCCCcEEEE
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDS----------FDGVDIALF 107 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~-~~~~~~~v~~~~~~~----------~~~~DvVf~ 107 (376)
.-+|.|+|+ |-+|...+..+... ..-++..+.+ +..-..+. ..+.+..+...+.+. -.++|+||+
T Consensus 28 G~~VlV~Ga-GgvGl~a~~~ak~~--G~~~Vi~~d~-~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid 103 (174)
T d1p0fa2 28 GSTCAVFGL-GGVGFSAIVGCKAA--GASRIIGVGT-HKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVE 103 (174)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHH--TCSEEEEECS-CGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCEEEEECC-CchhHHHHHHHHHc--CCceeeccCC-hHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEE
Confidence 368999998 99999999888765 3335544432 21111111 112222232111111 137999999
Q ss_pred cCCCchhhhhHHHHH
Q 017153 108 SAGGSISKKFGPIAV 122 (376)
Q Consensus 108 a~~~~~s~~~~~~~~ 122 (376)
|++...+.+..-..+
T Consensus 104 ~~g~~~~~~~~~~~~ 118 (174)
T d1p0fa2 104 CAGRIETMMNALQST 118 (174)
T ss_dssp CSCCHHHHHHHHHTB
T ss_pred cCCCchHHHHHHHHH
Confidence 999876655544443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=81.21 E-value=1.2 Score=35.59 Aligned_cols=84 Identities=19% Similarity=0.137 Sum_probs=45.2
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccC----------CCCCcEEEEc
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS----------FDGVDIALFS 108 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~----------~~~~DvVf~a 108 (376)
.-+|.|+|+ |-+|...+..+... -..++.++.+....-+.....+.+..+...+.++ -.++|++|+|
T Consensus 29 g~~VlI~G~-Gg~g~~~~~~~~~~--g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~ 105 (175)
T d1cdoa2 29 GSTCAVFGL-GAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 105 (175)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CCEEEEEec-CCccchHHHHHHHH--hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence 368999998 66777666666554 3445554433221101011112233332111111 1379999999
Q ss_pred CCCchhhhhHHHHHhCC
Q 017153 109 AGGSISKKFGPIAVEKG 125 (376)
Q Consensus 109 ~~~~~s~~~~~~~~~~G 125 (376)
++...+...+..+...|
T Consensus 106 ~G~~~~~~~a~~~~~~g 122 (175)
T d1cdoa2 106 VGNVGVMRNALESCLKG 122 (175)
T ss_dssp SCCHHHHHHHHHTBCTT
T ss_pred cCCHHHHHHHHHHhhCC
Confidence 99987766666554444
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.95 E-value=1.5 Score=33.84 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=59.3
Q ss_pred CCCEEEEECc----------ccHHHHHHHHHHhcCCCCCeEEEEEecC-CCCCceeeecCcceEEeecCccC------CC
Q 017153 38 SAPSVAVVGV----------TGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGKQLSFQDKAYTVEELTEDS------FD 100 (376)
Q Consensus 38 ~~irVaIvGa----------TG~vG~eLlr~L~~~~~p~~~l~~v~s~-~~~g~~~~~~~~~~~v~~~~~~~------~~ 100 (376)
++.||-|+|+ --|.+-+.++.|.+. .++.+.+.+. ...-...... ..+-+++++.+. ..
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~---g~~~IliN~NPeTVstd~d~a-D~lYfeplt~e~v~~Ii~~E 78 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRED---GYETIMVNCNPETVSTDYDTS-DRLYFEPVTLEDVLEIVRIE 78 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT---TCEEEEECCCTTSSTTSTTSS-SEEECCCCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhc---CCeEEEEecChhhhhcChhhc-CceEEccCCHHHHHHHHHHh
Confidence 3579999998 228999999999986 4677777542 2111111000 112234554332 25
Q ss_pred CCcEEEEcCCCchhhhhHHHHHhCCCeEE
Q 017153 101 GVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (376)
Q Consensus 101 ~~DvVf~a~~~~~s~~~~~~~~~~G~~VI 129 (376)
+.|-|+...|.-.+-..+..+.+.|++++
T Consensus 79 ~p~~ii~~~GGQtalnla~~L~~~gv~iL 107 (121)
T d1a9xa4 79 KPKGVIVQYGGQTPLKLARALEAAGVPVI 107 (121)
T ss_dssp CCSEEECSSSTHHHHTTHHHHHHTTCCBC
T ss_pred CCCEEEeehhhhhHHHHHHHHHHcCCcEE
Confidence 78999999999999999999999998875
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=80.85 E-value=3.9 Score=31.35 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=64.5
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEecCCCCCceeeecCcceEEeecCccCC--CCCcEEEEcCCCchhhh
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISKK 116 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~s~~~~g~~~~~~~~~~~v~~~~~~~~--~~~DvVf~a~~~~~s~~ 116 (376)
.-||.|-|.||.-|+--.+...+. .-++++-.++...|+.+ .++++.+.-.+.. .++|+-+...|...+.+
T Consensus 7 ~trVivQGiTG~~G~~ht~~m~~y---GT~iVaGVtPgkgG~~~----~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~d 79 (121)
T d1oi7a1 7 ETRVLVQGITGREGQFHTKQMLTY---GTKIVAGVTPGKGGMEV----LGVPVYDTVKEAVAHHEVDASIIFVPAPAAAD 79 (121)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH---TCEEEEEECTTCTTCEE----TTEEEESSHHHHHHHSCCSEEEECCCHHHHHH
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHh---CCceEeeeecCCCCcEE----ECCchHhhHHHHHHhcCCeEEEEeeCHHHHHH
Confidence 458999999999999988877764 34788777777777655 2466654322221 47899999999999988
Q ss_pred hHHHHHhCCCeEEE
Q 017153 117 FGPIAVEKGSIVVD 130 (376)
Q Consensus 117 ~~~~~~~~G~~VID 130 (376)
.+-++.++|++.|-
T Consensus 80 Ai~EAi~agI~liv 93 (121)
T d1oi7a1 80 AALEAAHAGIPLIV 93 (121)
T ss_dssp HHHHHHHTTCSEEE
T ss_pred HHHHHHhCCCcEEE
Confidence 88889999998664
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=80.68 E-value=0.77 Score=35.00 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=23.7
Q ss_pred CEEEEECcccHHHHHHHHHHhcCCCCCeEEEEE
Q 017153 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (376)
Q Consensus 40 irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v 72 (376)
.+|.|+|+ |++|.|++..|.+. ..++..+
T Consensus 33 ~~vvIiGg-G~iG~E~A~~l~~~---g~~Vtlv 61 (122)
T d1xhca2 33 GEAIIIGG-GFIGLELAGNLAEA---GYHVKLI 61 (122)
T ss_dssp SEEEEEEC-SHHHHHHHHHHHHT---TCEEEEE
T ss_pred CcEEEECC-cHHHHHHHHHhhcc---cceEEEE
Confidence 68999999 99999999999875 3455544
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.30 E-value=0.75 Score=38.80 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=24.8
Q ss_pred CCEEEEECcccHHHHHHHHHHhcCCCCCeEEEEEe
Q 017153 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (376)
Q Consensus 39 ~irVaIvGaTG~vG~eLlr~L~~~~~p~~~l~~v~ 73 (376)
+++|+|||| |.+|..+...|.+++ .-++..+-
T Consensus 1 ~~~V~IvGa-G~aGl~~A~~L~~~G--i~~V~V~E 32 (288)
T d3c96a1 1 PIDILIAGA-GIGGLSCALALHQAG--IGKVTLLE 32 (288)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT--CSEEEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCC--CCeEEEEe
Confidence 379999999 999999999998873 22555443
|